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ProtCAD can be browsed in Browse page by Pfams, UniProts and Pfam architectures.


  • Pfams

    Browse Pfams present in the PDB.

    Browse Pfams

    Click a Pfam returns all Pfam architecture groups and their clusters. This is the same page like input a Pfam ID in search.


    Column Annotation
    Pfam ID Pfam code, e.g. A_amylase_inhib
    Pfam Accession Pfam accession code, e.g. PF01356
    Description Description of Pfam family
    #Entries The number of entries containing this UniProt in the PDB
    ModelLength The length of Pfam HMM

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  • UniProts

    Browse UniProts present in the PDB.

    Browse UniProts

    Click a UniProt returns all Pfam architecture groups and their clusters containing the UniProt. This is the same page like input a UniProt ID in search.


    Column Annotation
    UniProt Code UniProt code
    #CFs The number of crystal forms of this UniProt in the PDB
    #Entries The number of entries containing this UniProt in the PDB
    #Assemblies The number of assemblies containing this UniProt in ProtCAD
    Gene The gene name of this UniProt
    Name Protein name
    Arch Pfam architecture of this UniProt sequence. "+x" means there are x copies of Pfams. e.g. (PBP_dimer)+2-(Transpeptidase): 2 copies of Pfam (PBP_dimer) and 1 copy of (Transpeptidase)

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  • Pfam architectures

    Browse Pfam architectures present in the PDB.

    Browse PfamArchs

    Click a Pfam architecture returns all assemblies in the Pfam architecture group and a link to the clusters page.


    Column Annotation
    GroupID The integer number for this Pfam architecture in ProtCAD
    Arch Pfam architecture: the component of unique chain Pfam architectures
    (Arch)n Assembly in Pfam architecture format, with copy numbers of chain Pfam architecture
    #CFs The number of crystal forms in this Pfam architecture group
    #Entries The number of entries in this Pfam architecture
    #UniProts The number of UniProts in this Pfam architecture
    #Assemblies The number of assemblies in this Pfam architecture
    Stoichiometry Assembly stoichiometry in ABC format

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