PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDR Structures for L3-10-2

Summary info for L3-10-2
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
L3-10-2	61	5.38	2L_7E7YD	CSYAGSsTwV	21	6.12	kappa lambda	BBBAELLBBB	7

Structures in cluster L3-10-2
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
L3-10-2	6CBPA	2.17	lambda	Homo.sapiens	Hu_IGLV2-14*02	94.0	Hu_IGLV2-14*02	33.3	CSFGGSATVV	BBBAELLBBB	14
L3-10-2	7E7YB	2.41	lambda	Homo.sapiens	Hu_IGLV2-23*02	93.8	Hu_IGLV2-23*02	88.9	CSYAGSSTWV	BBBAELLBBB	8
L3-10-2	7E7YD	2.41	lambda	Homo.sapiens	Hu_IGLV2-23*02	93.8	Hu_IGLV2-23*02	88.9	CSYAGSSTWV	BBBAELLBBB	6
L3-10-2	2MCG2	2	lambda	Homo.sapiens	Hu_IGLV2-8*01	94.1	Hu_IGLV2-8*01	77.8	SSYEGSDNFV	BBBAELLBBB	18
L3-10-2	4UNVA	1.6	lambda	Homo.sapiens	Hu_IGLV2-8*01	92.6	Hu_IGLV2-8*01	77.8	SSYEGSDNFV	BBBAELLBBB	8
L3-10-2	5ACLA	1.49	lambda	Homo.sapiens	Hu_IGLV2-8*01	94.1	Hu_IGLV2-8*01	77.8	SSYEGSDNFV	BBBAELLBBB	6
L3-10-2	5ACMA	1.05	lambda	Homo.sapiens	Hu_IGLV2-8*01	94.1	Hu_IGLV2-8*01	77.8	SSYEGSDNFV	BBBAELLBBB	6
L3-10-2	5ACMB	1.05	lambda	Homo.sapiens	Hu_IGLV2-8*01	94.1	Hu_IGLV2-8*01	77.8	SSYEGSDNFV	BBBAELLBBB	9
L3-10-2	5GKRB	2.1	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	88.9	CSYAGSYTYV	BBBAELLBBB	5
L3-10-2	5GKSB	2.05	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	88.9	CSYAGSYTYV	BBBAELLBBB	6
L3-10-2	5GKRD	2.1	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	88.9	CSYAGSYTYV	BBBAELLBBB	5
L3-10-2	5GKSD	2.05	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	88.9	CSYAGSYTYV	BBBAELLBBB	6
L3-10-2	6PBWC	2.058	lambda	Homo.sapiens	Hu_IGLV2-23*01	95.6	Hu_IGLV2-23*01	77.8	CSYAGSSAWV	BBBAELLBBB	4
L3-10-2	6WM9C	2.45	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	88.9	CSYAGTYTFV	BBBAELLBBB	8
L3-10-2	6WM9F	2.45	lambda	Homo.sapiens	Hu_IGLV2-11*01	97.1	Hu_IGLV2-11*01	88.9	CSYAGTYTFV	BBBAELLBBB	6
L3-10-2	7BEHL	2.3	lambda	Homo.sapiens	Hu_IGLV2-8*01	97.1	Hu_IGLV2-8*01	77.8	SSYAGSNHWV	BBBAELLBBB	8
L3-10-2	7DC7B	1.77	lambda	Homo.sapiens	Hu_IGLV2-8*01	98.5	Hu_IGLV2-8*01	88.9	SSYAGSNNVV	BBBAELLBBB	12
L3-10-2	7LQ7L	3.4	lambda	Homo.sapiens	Hu_IGLV2-8*01	100.0	Hu_IGLV2-8*01	88.9	SSYAGSNNLV	BBBAEBLBBB	32
L3-10-2	7LQ7G	3.4	lambda	Homo.sapiens	Hu_IGLV2-8*01	100.0	Hu_IGLV2-8*01	88.9	SSYAGSNNLV	BBBAEBLBBB	32
L3-10-2	7ND7K	EM	lambda	Homo.sapiens	Hu_IGLV2-8*01	97.1	Hu_IGLV2-8*01	77.8	SSYAGSNHWV	BBBAELLBBB	8
L3-10-2	7ND7G	EM	lambda	Homo.sapiens	Hu_IGLV2-8*01	97.1	Hu_IGLV2-8*01	77.8	SSYAGSNHWV	BBBAELLBBB	8
L3-10-2	7ND7L	EM	lambda	Homo.sapiens	Hu_IGLV2-8*01	97.1	Hu_IGLV2-8*01	77.8	SSYAGSNHWV	BBBAELLBBB	8
L3-10-2	7LQ7D	3.4	lambda	Homo.sapiens	Hu_IGLV2-8*01	100.0	Hu_IGLV2-8*01	88.9	SSYAGSNNLV	BBBAEBLBBB	32
L3-10-2	5N4JL	1.503	lambda	Homo.sapiens	Hu_IGLV2-18*02	97.1	Hu_IGLV2-18*02	66.7	SLYISSSTWV	BBBAELLBBB	12
L3-10-2	5U0RL	3.295	lambda	Homo.sapiens	Hu_IGLV2-14*02	100.0	Hu_IGLV2-14*02	44.4	CSYAGSSIIL	BBBBELLBBB	15
L3-10-2	5U15B	2.26	lambda	Homo.sapiens	Hu_IGLV2-23*02	100.0	Hu_IGLV2-23*02	88.9	CSYAGSSTVI	BBBAELLBBB	7
L3-10-2	5U15L	2.26	lambda	Homo.sapiens	Hu_IGLV2-23*02	100.0	Hu_IGLV2-23*02	88.9	CSYAGSSTVI	BBBAELLBBB	6
L3-10-2	5WHJL	2.15	lambda	Homo.sapiens	Hu_IGLV2-14*02	100.0	Hu_IGLV2-14*02	33.3	ASYAGSGIYV	BBBAELLBBB	13
L3-10-2	5WHKL	2.5	lambda	Homo.sapiens	Hu_IGLV2-14*02	100.0	Hu_IGLV2-14*02	33.3	ASYAGSGIYV	BBBAELLBBB	17
L3-10-2	6B5PL	2.297	lambda	Homo.sapiens	Hu_IGLV2-14*02	94.1	Hu_IGLV2-14*02	44.4	CSYVGSDTWV	BBBAELLBBB	7
L3-10-2	6B5RL	1.775	lambda	Homo.sapiens	Hu_IGLV2-14*02	94.1	Hu_IGLV2-14*02	44.4	CSYVGSDTWV	BBBAELLBBB	7
L3-10-2	6B5SL	1.983	lambda	Homo.sapiens	Hu_IGLV2-14*02	94.1	Hu_IGLV2-14*02	44.4	CSYVGSDTWV	BBBAELLBBB	6
L3-10-2	6B5TL	2.222	lambda	Homo.sapiens	Hu_IGLV2-14*02	94.1	Hu_IGLV2-14*02	44.4	CSYVGSDTWV	BBBAELLBBB	6
L3-10-2	6PBVA	1.566	lambda	Homo.sapiens	Hu_IGLV2-14*01	94.1	Hu_IGLV2-14*01	66.7	SSYAGSSTWV	BBBAELLBBB	6
L3-10-2	6PBVC	1.566	lambda	Homo.sapiens	Hu_IGLV2-14*01	94.1	Hu_IGLV2-14*01	66.7	SSYAGSSTWV	BBBAELLBBB	5
L3-10-2	6UM5L	EM	lambda	Homo.sapiens	Hu_IGLV2-23*02	100.0	Hu_IGLV2-23*02	88.9	CSYAGSSTVI	BBBAELLBBB	14
L3-10-2	6UM7K	EM	lambda	Homo.sapiens	Hu_IGLV2-23*02	97.1	Hu_IGLV2-23*02	77.8	CSYAGSATVI	BBBAELLBBB	18
L3-10-2	6UM5D	EM	lambda	Homo.sapiens	Hu_IGLV2-23*02	100.0	Hu_IGLV2-23*02	88.9	CSYAGSSTVI	BBBAELLBBB	14
L3-10-2	6VCAL	3.73	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	87.5	VLFMGSGIWV	BBBAELLBBB	32
L3-10-2	6UM7C	EM	lambda	Homo.sapiens	Hu_IGLV2-23*02	97.1	Hu_IGLV2-23*02	77.8	CSYAGSATVI	BBBAELLBBB	18
L3-10-2	6UM5H	EM	lambda	Homo.sapiens	Hu_IGLV2-23*02	100.0	Hu_IGLV2-23*02	88.9	CSYAGSSTVI	BBBAELLBBB	14
L3-10-2	6VCAF	3.73	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	87.5	VLFMGSGIWV	BBBAELLBBB	32
L3-10-2	6UM7G	EM	lambda	Homo.sapiens	Hu_IGLV2-23*02	97.1	Hu_IGLV2-23*02	77.8	CSYAGSATVI	BBBAELLBBB	18
L3-10-2	6VCAJ	3.73	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	87.5	VLFMGSGIWV	BBBAELLBBB	33
L3-10-2	6VCAO	3.73	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	87.5	VLFMGSGIWV	BBBAELLBBB	33
L3-10-2	7JMPL	1.712	lambda	Homo.sapiens	Hu_IGLV2-23*02	100.0	Hu_IGLV2-23*02	88.9	CSYAGSSTWV	BBBAELLBBB	5
L3-10-2	7K8QL	2	lambda	Homo.sapiens	Hu_IGLV2-23*01	100.0	Hu_IGLV2-23*01	100.0	CSYAGSSTLV	BBBAELLBBB	10
L3-10-2	7PS6D	2.26	lambda	Homo.sapiens	Hu_IGLV2-23*01	97.1	Hu_IGLV2-23*01	88.9	CSYAGSSTWV	BBBAELLBBB	10
L3-10-2	5TQAB	2.723	lambda	Homo.sapiens	Hu_IGLV2-14*02	94.1	Hu_IGLV2-14*02	33.3	CSFGGSATVV	BBBAELLBBB	9
L3-10-2	5TQAL	2.723	lambda	Homo.sapiens	Hu_IGLV2-14*02	94.1	Hu_IGLV2-14*02	33.3	CSFGGSATVV	BBBAELLBBB	9
L3-10-2	6P9IB	2.4	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	77.8	CSFAGSYTYV	BBBAELLBBB	7
L3-10-2	6P9ID	2.4	lambda	Homo.sapiens	Hu_IGLV2-11*01	95.6	Hu_IGLV2-11*01	77.8	CSFAGSYTYV	BBBAELLBBB	11
L3-10-2	1DCLB	2.3	lambda	Homo.sapiens	Hu_IGLV2-8*01	94.0	Hu_IGLV2-8*01	77.8	SSYEGSDNFV	BBBAELLBBB	15
L3-10-2	1MCDA		lambda	Homo.sapiens	Hu_IGLV2-8*01	94.0	Hu_IGLV2-8*01	77.8	SSYEGSDNFV	BBBBELLBBB	16
L3-10-2	1MCEA	2.7	lambda	Homo.sapiens	Hu_IGLV2-8*01	94.0	Hu_IGLV2-8*01	77.8	SSYEGSDNFV	BBBAELLBBB	20
L3-10-2	1MCLA	2.7	lambda	Homo.sapiens	Hu_IGLV2-8*01	94.0	Hu_IGLV2-8*01	77.8	SSYEGSDNFV	BBBBELLBBB	18
L3-10-2	1MCNA	2.7	lambda	Homo.sapiens	Hu_IGLV2-8*01	94.0	Hu_IGLV2-8*01	77.8	SSYEGSDNFV	BBBAELLBBB	14
L3-10-2	1MCQA	2.7	lambda	Homo.sapiens	Hu_IGLV2-8*01	94.0	Hu_IGLV2-8*01	77.8	SSYEGSDNFV	BBBAELLBBB	17
L3-10-2	7Z0XL	1.8	lambda	Homo.sapiens	Hu_IGLV2-23*02	98.5	Hu_IGLV2-23*02	88.9	CSYAGSSTWV	BBBAELLBBB	7
L3-10-2	5TPPL	1.85	lambda	Homo.sapiens	Hu_IGLV2-14*02	90.9	Hu_IGLV2-14*02	22.2	CSFGGSAAVV	BBBAELLBBB	7
L3-10-2	5I8KL	1.771	kappa	Homo.sapiens	Rb_IGKV1S15*01	92.3	Rb_IGKV1S15*01	10.0	AGdLSDWIHT	BBBAELLBBB	23

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