PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDR Structures for H3-9-2

Summary info for H3-9-2
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H3-9-2	44	9.19	3H_6DWAB	aRgyyAfDY	20	11.49	heavy	BBBAABBAB	16

Structures in cluster H3-9-2
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H3-9-2	5GS0H	3.275	heavy	Mus.musculus	Mo_IGHV3-6*01	94.4	Mo_IGHV3-6*01	100.0	ARAYIGFAY	BBBAABBAB	19
H3-9-2	5GS0X	3.275	heavy	Mus.musculus	Mo_IGHV3-6*01	94.4	Mo_IGHV3-6*01	100.0	ARAYIGFAY	BBBAABBAB	18
H3-9-2	7V3QB	2.98	heavy	Mus.musculus	Mo_IGHV4-1*01	87.7	Mo_IGHV4-1*01	50.0	ASYYEGFAY	BBBAABBAB	14
H3-9-2	7V3QD	2.98	heavy	Mus.musculus	Mo_IGHV4-1*01	87.7	Mo_IGHV4-1*01	50.0	ASYYEGFAY	BBBAABBAB	15
H3-9-2	1NJ9B	2.35	heavy	Mus.musculus	Mo_IGHV1S135*01	90.4	Mo_IGHV1S135*01	100.0	ARGGGLFAF	BBBEABBAB	30
H3-9-2	4ZPTA	2.591	heavy	Mus.musculus	Mo_IGHV5-9-3*01	97.3	Mo_IGHV5-9-3*01	50.0	VRDGNSMDY	BBBEABBAB	25
H3-9-2	4ZPVA	3.2	heavy	Mus.musculus	Mo_IGHV5-9-3*01	97.3	Mo_IGHV5-9-3*01	50.0	VRDGNSMDY	BBBEABBAB	18
H3-9-2	4ZPVH	3.2	heavy	Mus.musculus	Mo_IGHV5-9-3*01	97.3	Mo_IGHV5-9-3*01	50.0	VRDGNSMDY	BBBEABBAB	28
H3-9-2	5VTAI	2.8	heavy	Mus.musculus	Mo_IGHV1-39*01	95.8	Mo_IGHV1-39*01	50.0	TRFRVFFDV	BBBAABBAB	22
H3-9-2	5D6CB	1.72	heavy	Homo.sapiens	Hu_IGHV3-74*03	90.4	Hu_IGHV3-74*03	100.0	ARGDGGLDD	BBBBABBAB	15
H3-9-2	6DWAB	1.922	heavy	Homo.sapiens	Hu_IGHV3-74*03	90.4	Hu_IGHV3-74*03	100.0	ARGDGGLDD	BBBBABBAB	16
H3-9-2	1TETH	2.3	heavy	Mus.musculus	Mo_IGHV9-3*01	94.5	Mo_IGHV9-3*01	100.0	ARRSWYFDV	BBBAABBAB	10
H3-9-2	1ZEAH	1.78	heavy	Mus.musculus	Mo_IGHV9-3*01	94.5	Mo_IGHV9-3*01	100.0	ARRSWYFDV	BBBAABBAB	17
H3-9-2	5T6PB	1.97	heavy	Mus.musculus	Mo_IGHV5-12-2*01	97.3	Mo_IGHV5-12-2*01	50.0	IRQYYGFDY	BBBAABBAB	18
H3-9-2	5T78B	2.2	heavy	Mus.musculus	Mo_IGHV5-12-2*01	97.3	Mo_IGHV5-12-2*01	50.0	IRQYYGFDY	BBBAABBAB	16
H3-9-2	5T6PD	1.97	heavy	Mus.musculus	Mo_IGHV5-12-2*01	97.3	Mo_IGHV5-12-2*01	50.0	IRQYYGFDY	BBBAABBAB	17
H3-9-2	5T78D	2.2	heavy	Mus.musculus	Mo_IGHV5-12-2*01	97.3	Mo_IGHV5-12-2*01	50.0	IRQYYGFDY	BBBAABBAB	17
H3-9-2	7UENH	1.55	heavy	Mus.musculus	Mo_IGHV6-7*02	91.8	Mo_IGHV6-7*02	100.0	TWSHYALDN	BBBAABBAB	20
H3-9-2	4QEXH	4.5	heavy	Mus.musculus	Mo_IGHV1S113*01	91.7	Mo_IGHV1S113*01	0.0	STGYDAMDY	BBBAABBAB	24
H3-9-2	4QEXI	4.5	heavy	Mus.musculus	Mo_IGHV1S113*01	91.7	Mo_IGHV1S113*01	0.0	STGYDAMDY	BBBAABBAB	25
H3-9-2	1FE8J	2.03	heavy	Mus.musculus	Mo_IGHV2-3*01	93.1	Mo_IGHV2-3*01	50.0	AGNYYGMDY	BBBAAEBAB	19
H3-9-2	1FE8H	2.03	heavy	Mus.musculus	Mo_IGHV2-3*01	93.1	Mo_IGHV2-3*01	50.0	AGNYYGMDY	BBBAABBAB	19
H3-9-2	1FE8I	2.03	heavy	Mus.musculus	Mo_IGHV2-3*01	93.1	Mo_IGHV2-3*01	50.0	AGNYYGMDY	BBBAABBAB	17
H3-9-2	2NR6D	2.81	heavy	Mus.musculus	Mo_IGHV14-3*02	91.8	Mo_IGHV14-3*02	100.0	ARWVRQMDY	BBBAABBAB	16
H3-9-2	2NR6F	2.81	heavy	Mus.musculus	Mo_IGHV14-3*02	91.8	Mo_IGHV14-3*02	100.0	ARWVRQMDY	BBBAABBAB	13
H3-9-2	3S34H	2.2	heavy	Mus.musculus.Homo.sapiens	Hu_IGHV3-21*01	98.6	Hu_IGHV3-21*01	100.0	ARVTDAFDI	BBBAABBAB	11
H3-9-2	3S36H	3.2	heavy	Mus.musculus.Homo.sapiens	Hu_IGHV3-21*01	98.6	Hu_IGHV3-21*01	100.0	ARVTDAFDI	BBBAABBAB	12
H3-9-2	5D93C	2.201	heavy	Mus.musculus	Mo_IGHV1-66*01	98.6	Mo_IGHV1-66*01	100.0	ARSEDWFAY	BBBAABBAB	15
H3-9-2	5D93F	2.201	heavy	Mus.musculus	Mo_IGHV1-66*01	98.6	Mo_IGHV1-66*01	100.0	ARSEDWFAY	BBBAABBAB	16
H3-9-2	5F3HE	2.7	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Hu_IGHV3-23*05	100.0	AKQDYAMNY	BBBBABBAB	15
H3-9-2	5GRUL	1.955	heavy	Mus.musculus	Mo_IGHV3-6*01	94.4	Mo_IGHV3-6*01	100.0	ARAYIGFAY	BBBAABBAB	13
H3-9-2	6CSEA	3.24	heavy	Mus.musculus	Mo_IGHV6-6*01	95.9	Mo_IGHV6-6*01	100.0	TRTAGACGQ	BBBAABBAB	18
H3-9-2	6CSFA	3.3	heavy	Mus.musculus	Mo_IGHV6-6*01	95.9	Mo_IGHV6-6*01	100.0	TRTAGACGQ	BBBAABBAB	21
H3-9-2	6CSEH	3.24	heavy	Mus.musculus	Mo_IGHV6-6*01	95.9	Mo_IGHV6-6*01	100.0	TRTAGACGQ	BBBAABBAB	18
H3-9-2	6CSFH	3.3	heavy	Mus.musculus	Mo_IGHV6-6*01	95.9	Mo_IGHV6-6*01	100.0	TRTAGACGQ	BBBEABBAB	21
H3-9-2	6HF1C	1.94	heavy	Mus.musculus	Mo_IGHV1-66*01	98.6	Mo_IGHV1-66*01	100.0	ARSEDWFAY	BBBAABBAB	14
H3-9-2	6HF1F	1.94	heavy	Mus.musculus	Mo_IGHV1-66*01	98.6	Mo_IGHV1-66*01	100.0	ARSEDWFAY	BBBAABBAB	15
H3-9-2	7CU5B	2.81	heavy	Homo.sapiens	Hu_IGHV3-7*01	98.6	Hu_IGHV3-7*01	100.0	ARQLYYFDY	BBBAABBAB	19
H3-9-2	7TCQA	2.02	heavy	Mus.musculus	Mo_IGHV1-5*01	91.8	Mo_IGHV1-5*01	100.0	TRTGSYFDY	BBBAABBAB	13
H3-9-2	7TCQH	2.02	heavy	Mus.musculus	Mo_IGHV1-5*01	91.8	Mo_IGHV1-5*01	100.0	TRTGSYFDY	BBBAABBAB	16
H3-9-2	1CGSH	2.6	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	50.0	TRGYSSMDY	BBBAAEBAB	22
H3-9-2	1YNKH	2.1	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	50.0	TRGYSSMDY	BBBAABBAB	14
H3-9-2	2CGRH	2.2	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	50.0	TRGYSSMDY	BBBAABBAB	15
H3-9-2	3IY1B	EM	heavy	Rattus.norvegicus	Ra_IGHV1-43*01	97.0	Ra_IGHV1-43*01	100.0	ARGDWNFDF	EBBAABBAB	22

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022