PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for H1-13-7

Summary info for H1-13-7
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H1-13-7	36	1.06	1DQDH	kasGdsftsgfmn	19	1.25	Hu La Mf Mo	heavy	PBBLBPAABGBBB	22

Structures in cluster H1-13-7
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H1-13-7	1DQDH	2.1	heavy	Mus.musculus	Mo_IGHV3-8*02	94.5	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	BBBLBPAABGBBB	0
H1-13-7	1NGZB	1.6	heavy	Mus.musculus.Homo.sapiens	Mo_IGHV1-72*01	95.9	Mo_IGHV1-72*01	100	KASGYTFTSYWMH	PPBLBPAAPGPBB	29
H1-13-7	1OSPH	1.95	heavy	Mus.musculus	Mo_IGHV3-8*02	94.5	Mo_IGHV3-8*02	69.2	SVTGEPITSGFWD	PBBLBPAABGBBB	13
H1-13-7	1XCQD	3.5	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	92.3	KASGYTFTDFSMH	BPBLBPDDBBBBB	35
H1-13-7	4G6AC	2.501	heavy	Homo.sapiens	Mo_IGHV3-8*02	94.3	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	BBBGBPAABGBBB	18
H1-13-7	4G6AH	2.501	heavy	Homo.sapiens	Mo_IGHV3-8*02	94.3	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	BBBGPPAABGBBB	27
H1-13-7	4GAGH	1.8	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	BBBLBBAABGBBB	16
H1-13-7	4GAYH	2.65	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	BBBLBPADBGBBB	25
H1-13-7	4HS6B	1.53	heavy	Homo.sapiens	Hu_IGHV4-61*01	83.6	Mo_IGHV3-8*02	84.6	TVSGDSITSGYWN	PBBLBPAABGBBB	15
H1-13-7	4KPHH	2.59	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	PBBGBPAABGBBB	16
H1-13-7	4KPHI	2.59	heavy	Mus.musculus	Mo_IGHV3-8*02	97.3	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	PBBGBPAABGBBB	16
H1-13-7	4LEXH	2.02	heavy	Mus.musculus	Hu_IGHV4-61*01	93.2	Mo_IGHV3-8*02	76.9	TVSGDSITSGFWN	BBBLBBAABGBBB	13
H1-13-7	4POZD	1.75	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	92.3	SVTGDSITSGFWN	BBBLBBAABGBBB	17
H1-13-7	4PP2B	2.74	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	92.3	SVTGDSITSGFWN	PBBLBPAABGBBB	14
H1-13-7	4PP2D	2.74	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	92.3	SVTGDSITSGFWN	PBBLBPAABGBBB	13
H1-13-7	4QEXH	4.5	heavy	Mus.musculus	Mo_IGHV1S113*01	93.1	Mo_IGHV1S113*01	92.3	KTSGYTFTENTMH	PBBLBPAAPLPPB	31
H1-13-7	4QEXI	4.5	heavy	Mus.musculus	Mo_IGHV1S113*01	93.1	Mo_IGHV1S113*01	92.3	KTSGYTFTENTMH	PBBLBPAAPLPPB	31
H1-13-7	5AYUH	1.8	heavy	Mus.musculus	Mo_IGHV3S1*01	94.5	Mo_IGHV3S1*01	92.3	SVTGDSITSDYWS	PBBLBPAABGBBB	16
H1-13-7	5EOCH	1.98	heavy	Mus.musculus	Mo_IGHV1S82*01	90.4	Mo_IGHV1S82*01	92.3	KASGYSFTTYWMN	PPBLBPAABGBBB	23
H1-13-7	5EOCJ	1.98	heavy	Mus.musculus	Mo_IGHV1S82*01	90.4	Mo_IGHV1S82*01	84.6	KASGYSFTTYWMM	PPBLBPAABGBPB	27
H1-13-7	5GKRA	2.1	heavy	Homo.sapiens	Hu_IGHV4-59*01	95.9	Hu_IGHV4-59*01	92.3	TVSGGSISSYFWS	BPBLBPDABGBBB	16
H1-13-7	5GKSA	2.05	heavy	Homo.sapiens	Hu_IGHV4-59*01	95.9	Hu_IGHV4-59*01	92.3	TVSGGSISSYFWS	PPBLBPAABGBBB	13
H1-13-7	5MWNN	2.2	heavy	Lama.glama	La_IGHV1S3*01_VHH	93.2	La_IGHV1S3*01_VHH	38.5	AASGIMLGYFTMA	BBBLBBPAPBBBB	37
H1-13-7	5VCOB	2.74	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	92.3	SVTGDSITSGFWN	PBBLBPAABGBBB	14
H1-13-7	5VCOD	2.74	heavy	Mus.musculus	Mo_IGHV3-8*02	93.2	Mo_IGHV3-8*02	92.3	SVTGDSITSGFWN	PBBLBPAABGBBB	13
H1-13-7	5VXRH	1.4	heavy	Mus.musculus	Mo_IGHV3-8*02	97.2	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	PBBLBPAABGBBB	13
H1-13-7	6B70C	EM	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	53.8	AASGFNISSSSIH	PPPLBPAAPPPBB	37
H1-13-7	6B7ZC	EM	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	53.8	AASGFNISSSSIH	PPPLBBAAPPPPB	38
H1-13-7	6B7ZE	EM	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	53.8	AASGFNISSSSIH	PPPLBBAAPPPPB	38
H1-13-7	6BCKH	2.7	heavy	Homo.sapiens	Hu_IGHV1-2*03	71.8	Hu_IGHV1-2*03	46.2	EAQGYRFPDYIIH	PPBLBPAAPGPBP	28
H1-13-7	6BF7C	EM	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	53.8	AASGFNISSSSIH	BPBLBBAAPPBPB	33
H1-13-7	6BF7E	EM	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	53.8	AASGFNISSSSIH	BPPLBBAAPPBBB	35
H1-13-7	6BF9C	EM	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	53.8	AASGFNISSSSIH	BPPLBBAAPPBBB	35
H1-13-7	6BF9E	EM	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	53.8	AASGFNISSSSIH	BPPLBBAAPPBPB	35
H1-13-7	6BLIA	2.12	heavy	Homo.sapiens	Hu_IGHV4-59*01	94.5	Hu_IGHV4-59*01	76.9	TVSGGSTSSYFWN	BBBLBBAABGBBB	17
H1-13-7	6BLID	2.12	heavy	Homo.sapiens	Hu_IGHV4-59*01	94.5	Hu_IGHV4-59*01	76.9	TVSGGSTSSYFWN	BPBLBBAABGBBB	18
H1-13-7	6BLIG	2.12	heavy	Homo.sapiens	Hu_IGHV4-59*01	94.5	Hu_IGHV4-59*01	76.9	TVSGGSTSSYFWN	BBBLBBAABGBBB	17
H1-13-7	6BLIJ	2.12	heavy	Homo.sapiens	Hu_IGHV4-59*01	94.5	Hu_IGHV4-59*01	76.9	TVSGGSTSSYFWN	BPBLBBAABGBBB	17
H1-13-7	6BZUA	2.7	heavy	Mus.musculus	Mo_IGHV3-8*02	95.9	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	PBBBBPAABGBBB	21
H1-13-7	6BZUC	2.7	heavy	Mus.musculus	Mo_IGHV3-8*02	95.9	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	PBBLBPAABGBBB	14
H1-13-7	6BZUE	2.7	heavy	Mus.musculus	Mo_IGHV3-8*02	95.9	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	PBBGBPAABGBBB	14
H1-13-7	6BZUG	2.7	heavy	Mus.musculus	Mo_IGHV3-8*02	95.9	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	PBDABPAABGBBB	35
H1-13-7	6BZVA	2.654	heavy	Mus.musculus	Mo_IGHV3-8*02	98.6	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	BBBLBPAABGBBB	11
H1-13-7	6BZVC	2.654	heavy	Mus.musculus	Mo_IGHV3-8*02	98.6	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	PBBLBBAABGBBB	11
H1-13-7	6BZVE	2.654	heavy	Mus.musculus	Mo_IGHV3-8*02	98.6	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	PBBLBBAABGBBB	11
H1-13-7	6BZVG	2.654	heavy	Mus.musculus	Mo_IGHV3-8*02	98.6	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	PBBLBBAABGBBB	14
H1-13-7	6BZWA	2.2	heavy	Mus.musculus	Mo_IGHV3-8*02	98.6	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	BBBLBBAABGBBB	17
H1-13-7	6BZWC	2.2	heavy	Mus.musculus	Mo_IGHV3-8*02	98.6	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	BBBLBBAABGBBB	15
H1-13-7	6BZWE	2.2	heavy	Mus.musculus	Mo_IGHV3-8*02	98.6	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	BBBLBBAABGBBB	15
H1-13-7	6BZWG	2.2	heavy	Mus.musculus	Mo_IGHV3-8*02	98.6	Mo_IGHV3-8*02	100	SVTGDSITSGYWN	BBBLBBAABGBBB	17
H1-13-7	6C6XA	1.99	heavy	Macaca.mulatta	Mf_IGHV4-2*01	94.5	Mf_IGHV4-2*01	92.3	AVSGDSISSNYWS	PBBLBPAABGBBB	13
H1-13-7	6C6XC	1.99	heavy	Macaca.mulatta	Mf_IGHV4-2*01	94.5	Mf_IGHV4-2*01	92.3	AVSGDSISSNYWS	PBBLBBAABGBBB	17
H1-13-7	6C6XE	1.99	heavy	Macaca.mulatta	Mf_IGHV4-2*01	94.5	Mf_IGHV4-2*01	92.3	AVSGDSISSNYWS	BBBLBBAABGBBB	15
H1-13-7	6C6YA	3.32	heavy	Macaca.mulatta	Mf_IGHV4-2*01	94.5	Mf_IGHV4-2*01	92.3	AVSGDSISSNYWS	BBBLBPAABGBBB	19
H1-13-7	6DFIH	2.48	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	84.6	TVSGGSIDTYYWS	BBBLBPAABGPBB	14
H1-13-7	6DFJH	2.07	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	84.6	TVSGGSIDTYYWS	BBBLBPAABGPBB	15
H1-13-7	6IVZH	2.4	heavy	Homo.sapiens	Hu_IGHV4-59*01	84.9	Hu_IGHV4-59*01	61.5	TVSGGSTYNHHWS	BBBLBPDAPGBPB	19
H1-13-7	6IW0H	3.6	heavy	Homo.sapiens	Hu_IGHV4-59*01	84.9	Hu_IGHV4-59*01	61.5	TVSGGSTYNHHWS	PBBLBPAABGBPB	19
H1-13-7	6IW2B	2.9	heavy	Homo.sapiens	Hu_IGHV4-59*01	84.9	Hu_IGHV4-59*01	61.5	TVSGGSTYNHHWS	BBBLBPDAPGBPB	19
H1-13-7	6IW2E	2.9	heavy	Homo.sapiens	Hu_IGHV4-59*01	84.9	Hu_IGHV4-59*01	61.5	TVSGGSTYNHHWS	BBBLBPDAPGBPB	19
H1-13-7	6IW2H	2.9	heavy	Homo.sapiens	Hu_IGHV4-59*01	84.9	Hu_IGHV4-59*01	61.5	TVSGGSTYNHHWS	BBBLBPDAPGBPB	19
H1-13-7	6IW2K	2.9	heavy	Homo.sapiens	Hu_IGHV4-59*01	84.9	Hu_IGHV4-59*01	61.5	TVSGGSTYNHHWS	BBBLBPDAPGBPB	19
H1-13-7	6IW2N	2.9	heavy	Homo.sapiens	Hu_IGHV4-59*01	84.9	Hu_IGHV4-59*01	61.5	TVSGGSTYNHHWS	BBBLBPDAPGBPB	19
H1-13-7	6IW2Q	2.9	heavy	Homo.sapiens	Hu_IGHV4-59*01	84.9	Hu_IGHV4-59*01	61.5	TVSGGSTYNHHWS	BBBLBPDAPGBPB	19

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019