The Pfams interacting with at least one peptide

PPBD: Professional Peptide Binding Domain.
A PPBD is defined as a Pfam with at least 3 UniProts which bind peptides in the PDB

#Pfams = 1645
PFAM IDPfam AccessionDescription#Entry#IEntryIs PPBD
14-3-3PF0024414-3-3 protein230232Y
2Fe-2S_thioredxPF01257Thioredoxin-like [2Fe-2S] ferredoxin86N
2-Hacid_dh_CPF02826D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain21N
2OG-FeII_Oxy_3PF136402OG-Fe(II) oxygenase superfamily1212N
2-oxoacid_dhPF001982-oxoacid dehydrogenases acyltransferase (catalytic domain)11N
53-BP1_TudorPF09038Tumour suppressor p53-binding protein-1 Tudor99N
7kD_DNA_bindingPF022947kD DNA-binding domain11N
7tm_1PF000017 transmembrane receptor (rhodopsin family)7761N
7tm_2PF000027 transmembrane receptor (Secretin family)1629N
7tm_4PF13853Olfactory receptor11N
7TM_GPCR_SrabPF10292Serpentine type 7TM GPCR receptor class ab chemoreceptor01N
A2MPF00207Alpha-2-macroglobulin family11N
A2M_BRDPF07703Alpha-2-macroglobulin bait region domain12N
AA_permease_2PF13520Amino acid permease11N
AAAPF00004ATPase family associated with various cellular activities (AAA)5958N
AAA_16PF13191AAA ATPase domain11N
AAA_2PF07724AAA domain (Cdc48 subfamily)3935N
AAA_23PF13476AAA domain14N
AAA_lid_3PF17862AAA+ lid domain312N
ABC_membranePF00664ABC transporter transmembrane region99N
ABC_tranPF00005ABC transporter284N
ABC_tran_CTDPF16326ABC transporter C-terminal domain33N
Abhydrolase_1PF00561alpha/beta hydrolase fold22N
Abi_HHRPF07815Abl-interactor HHR11N
AbrB_CPF18277AbrB C-terminal domain01N
AcetDehyd-dimerPF09290Prokaryotic acetaldehyde dehydrogenase, dimerisation11N
Acetyltransf_1PF00583Acetyltransferase (GNAT) family2827N
Acetyltransf_10PF13673Acetyltransferase (GNAT) domain11N
Acetyltransf_11PF13720Udp N-acetylglucosamine O-acyltransferase; Domain 243N
Acetyltransf_13PF13880ESCO1/2 acetyl-transferase22N
Acetyltransf_16PF05301GNAT acetyltransferase, Mec-1722N
Acetyltransf_17PF17668Acetyltransferase (GNAT) domain11N
Acetyltransf_7PF13508Acetyltransferase (GNAT) domain04N
Acetyltransf_9PF13527Acetyltransferase (GNAT) domain11N
AChE_tetraPF08674Acetylcholinesterase tetramerisation domain22N
ACR_tranPF00873AcrB/AcrD/AcrF family05N
ActAPF05058ActA Protein21N
ActinPF00022Actin5439N
Acyl_transf_1PF00698Acyl transferase domain44N
Acyl-CoA_dh_MPF02770Acyl-CoA dehydrogenase, middle domain11N
Acyl-CoA_dh_NPF02771Acyl-CoA dehydrogenase, N-terminal domain11N
Adap_comp_subPF00928Adaptor complexes medium subunit family3027Y
Adaptin_NPF01602Adaptin N terminal region82N
ADD_ATRXPF17981Cysteine Rich ADD domain55N
ADD_DNMT3PF17980Cysteine rich ADD domain in DNMT355N
Adeno_hexonPF01065Hexon, adenovirus major coat protein, N-terminal domain54N
Adeno_hexon_CPF03678Hexon, adenovirus major coat protein, C-terminal domain54N
Adeno_Penton_BPF01686Adenovirus penton base protein86N
Adeno_PVIIIPF01310Adenovirus hexon associated protein, protein VIII41N
AdenylateSensorPF16579Adenylate sensor of SNF1-like protein kinase11N
ADH_NPF08240Alcohol dehydrogenase GroES-like domain11N
adh_short_C2PF13561Enoyl-(Acyl carrier protein) reductase41N
ADH_zinc_NPF00107Zinc-binding dehydrogenase11N
ADP_ribosyl_GHPF03747ADP-ribosylglycohydrolase22N
AgenetPF05641Agenet domain44N
Agglutinin_CPF18021Agglutinin C-terminal66N
AHDPF17793ANC1 homology domain (AHD)23N
AIF_CPF14721Apoptosis-inducing factor, mitochondrion-associated, C-term11N
AlfinPF12165Alfin33N
ALIX_LYPXL_bndPF13949ALIX V-shaped domain binding to HIV66N
Alk_phosphatasePF00245Alkaline phosphatase82N
Alpha_adaptin_CPF02296Alpha adaptin AP2, C-terminal domain86N
Alpha_adaptinC2PF02883Adaptin C-terminal domain1914N
Alpha-amylasePF00128Alpha amylase, catalytic domain24N
AMA-1PF02430Apical membrane antigen 1911N
AmidasePF01425Amidase22N
Amidase_2PF01510N-acetylmuramoyl-L-alanine amidase99N
Amidase_3PF01520N-acetylmuramoyl-L-alanine amidase01N
Amino_oxidasePF01593Flavin containing amine oxidoreductase2221N
Aminotran_1_2PF00155Aminotransferase class I and II11N
AMOPF02461Ammonia monooxygenase51N
AmoCPF04896Ammonia monooxygenase/methane monooxygenase, subunit C55N
AMP_NPF05195Aminopeptidase P, N-terminal domain81N
AMP-binding_CPF13193AMP-binding enzyme C-terminal domain91N
AMPKBIPF047395'-AMP-activated protein kinase beta subunit, interaction domain11N
An_peroxidasePF03098Animal haem peroxidase11N
ANAPC10PF03256Anaphase-promoting complex, subunit 10 (APC10)61N
ANAPC3PF12895Anaphase-promoting complex, cyclosome, subunit 371N
ANAPC4_WD40PF12894Anaphase-promoting complex subunit 4 WD40 domain132N
ANATOPF01821Anaphylotoxin-like domain11N
ANF_receptorPF01094Receptor family ligand binding region44N
AnkPF00023Ankyrin repeat104N
Ank_2PF12796Ankyrin repeats (3 copies)5637N
Ank_4PF13637Ankyrin repeats (many copies)1210N
Ank_5PF13857Ankyrin repeats (many copies)81N
AnnexinPF00191Annexin62N
Anthrax-tox_MPF09156Anthrax toxin lethal factor, middle domain33N
Antimicrobial_8PF08103Uperin family11N
APC_repPF18797Adenomatous polyposis coli (APC) repeat1010N
APC1_CPF18122Anaphase-promoting complex sub unit 1 C-terminal domain62N
APG12PF04110Ubiquitin-like autophagy protein Apg1201N
APG5PF04106Autophagy protein Apg502N
APG6_NPF17675Apg6 coiled-coil region22N
ApidaecinPF00807Apidaecin111N
ApoC-IPF04691Apolipoprotein C-I (ApoC-1)42N
Apocytochr_F_CPF01333Apocytochrome F, C-terminal1314N
Apocytochr_F_NPF16639Apocytochrome F, N-terminal1312N
APP_amyloidPF10515Beta-amyloid precursor protein C-terminus172N
Arc_MAPF19284Arc MA domain01N
ARC6-like_IMSPF13355ARC6-like, IMS domain22N
ArfPF00025ADP-ribosylation factor family51N
ArgoMidPF16487Mid domain of argonaute11N
aRibPF18938Atypical Rib domain01N
ARIDPF01388ARID/BRIGHT DNA binding domain65N
ArmPF00514Armadillo/beta-catenin-like repeat112124N
Arm_3PF16186Atypical Arm repeat8610N
Arrestin_CPF02752Arrestin (or S-antigen), C-terminal domain63N
Arrestin_NPF00339Arrestin (or S-antigen), N-terminal domain74N
ArsA_ATPasePF02374Anion-transporting ATPase14N
ArylesterasePF01731Arylesterase99N
ASCPF00858Amiloride-sensitive sodium channel03N
ASF1_hist_chapPF04729ASF1 like histone chaperone109N
AspPF00026Eukaryotic aspartyl protease7171N
Asp_Arg_HydroxPF05118Aspartyl/Asparaginyl beta-hydroxylase212N
AsparaginasePF00710Asparaginase, N-terminal21N
Asparaginase_CPF17763Glutaminase/Asparaginase C-terminal domain21N
AstacinPF01400Astacin (Peptidase family M12A)11N
ATG14PF10186Vacuolar sorting 38 and autophagy-related subunit 1442N
ATG16PF08614Autophagy protein 16 (ATG16)12N
ATG17_likePF04108Autophagy protein ATG17-like domain22N
ATG7_NPF16420Ubiquitin-like modifier-activating enzyme ATG7 N-terminus11N
ATG8PF02991Autophagy protein Atg8 ubiquitin like3538N
ATLFPF07737Anthrax toxin lethal factor, N- and C-terminal domain1616N
ATP13PF12921Mitochondrial ATPase expression22N
ATP1G1_PLM_MAT8PF02038ATP1G1/PLM/MAT8 family21N
ATP-syntPF00231ATP synthase1036N
ATP-synt_8PF00895ATP synthase protein 852N
ATP-synt_APF00119ATP synthase A chain1112N
ATP-synt_abPF00006ATP synthase alpha/beta family, nucleotide-binding domain111N
ATP-synt_ab_NPF02874ATP synthase alpha/beta family, beta-barrel domain101N
ATP-synt_CPF00137ATP synthase subunit C1117N
ATP-synt_DEPF00401ATP synthase, Delta/Epsilon chain, long alpha-helix domain516N
ATP-synt_DE_NPF02823ATP synthase, Delta/Epsilon chain, beta-sandwich domain934N
ATP-synt_JPF04911ATP synthase j chain11N
ATP-synt_S1PF05827Vacuolar ATP synthase subunit S1 (ATP6S1)01N
Autoind_bindPF03472Autoinducer binding domain11N
AvidinPF01382Avidin family4749N
AWSPF17907AWS domain76N
Ax_dynein_lightPF10211Axonemal dynein light chain04N
AXHPF08517Ataxin-1 and HBP1 module (AXH)33N
BPF02216B domain82N
B1PF02246Protein L b1 domain77N
B2-adapt-app_CPF09066Beta2-adaptin appendage, C-terminal sub-domain62N
B56PF01603Protein phosphatase 2A regulatory B subunit (B56 family)910N
bacHORMA_2PF18173Bacterial HORMA domain 222N
BAFPF02961Barrier to autointegration factor02N
BaffR-Tall_bindPF09256BAFF-R, TALL-1 binding31N
BAHPF01426BAH domain1311N
Bap31_Bap29_CPF18035Bap31/Bap29 cytoplasmic coiled-coil domain01N
BB_PFPF18063Beta barrel Pore-forming domain22N
BBEPF08031Berberine and berberine like11N
Bcl-2PF00452Apoptosis regulator proteins, Bcl-2 family121115Y
Bcl-2_3PF15286Apoptosis regulator M11, B cell 2 leukaemia/lymphoma like33N
Bclx_interactPF08945Bcl-x interacting, BH3 domain487N
BcsBPF03170Bacterial cellulose synthase subunit55N
BETPF17035Bromodomain extra-terminal - transcription regulation87Y
Beta-APPPF03494Beta-amyloid peptide (beta-APP)7132N
Beta-CaspPF10996Beta-Casp domain01N
Beta-lactamase2PF13354Beta-lactamase enzyme family11N
BH3PF15285Beclin-1 BH3 domain, Bcl-2-interacting113N
BH4PF02180Bcl-2 homology region 4384N
bHLH-MYC_NPF14215bHLH-MYC and R2R3-MYB transcription factors N-terminal45N
Big_8PF17961Bacterial Ig domain1111N
BIRPF00653Inhibitor of Apoptosis domain4141Y
BK_channel_aPF03493Calcium-activated BK potassium channel alpha subunit02N
BNIP3PF06553BNIP302N
BombesinPF02044Bombesin-like peptide111N
BranchPF02485Core-2/I-Branching enzyme88N
BRCTPF00533BRCA1 C Terminus (BRCT) domain2424Y
BRCT_2PF16589BRCT domain, a BRCA1 C-terminus domain179N
BRCT_3PF18428BRCA1 C Terminus (BRCT) domain11N
BrixPF04427Brix domain52N
BRO1PF03097BRO1-like domain1913Y
BromodomainPF00439Bromodomain11298Y
BRXPF08381Transcription factor regulating root and shoot growth via Pin322N
BTBPF00651BTB/POZ domain177N
BTB_2PF02214BTB/POZ domain42N
BTDPF09270Beta-trefoil DNA-binding domain55N
Bud13PF09736Pre-mRNA-splicing factor of RES complex11N
bZIP_1PF00170bZIP transcription factor25N
bZIP_2PF07716Basic region leucine zipper77N
C1-setPF07654Immunoglobulin C1-set domain1716118N
C2PF00168C2 domain34N
Ca_chan_IQPF08763Voltage gated calcium channel IQ domain111N
CAF1C_H4-bdPF12265Histone-binding protein RBBP4 or subunit C of CAF1 complex2222N
CagSPF16707Cag pathogenicity island protein S of Helicobacter pylori11N
CagXPF03524Conjugal transfer protein24N
Calc_CGRP_IAPPPF00214Calcitonin / CGRP / IAPP family187N
Calici_coatPF00915Calicivirus coat protein51N
CaMBDPF02888Calmodulin binding domain11N
Candida_ALS_NPF11766Cell-wall agglutinin N-terminal ligand-sugar binding43N
CAP_GLYPF01302CAP-Gly domain44Y
CAP18_CPF12153LPS binding domain of CAP18 (C terminal)104N
Capsid_NCLDVPF04451Large eukaryotic DNA virus major capsid protein22N
Carb_kinasePF01256Carbohydrate kinase211N
CAS_CPF12026Crk-Associated Substrate C-terminal domain31N
Cation_ATPase_CPF00689Cation transporting ATPase, C-terminus45N
Cation_ATPase_NPF00690Cation transporter/ATPase, N-terminus51N
CBFD_NFYB_HMFPF00808Histone-like transcription factor (CBF/NF-Y) and archaeal histone23N
CbiAPF01656CobQ/CobB/MinD/ParA nucleotide binding domain11N
Cbl_NPF02262CBL proto-oncogene N-terminal domain 12727N
Cbl_N2PF02761CBL proto-oncogene N-terminus, EF hand-like domain274N
Cbl_N3PF02762CBL proto-oncogene N-terminus, SH2-like domain2727Y
CBM_14PF01607Chitin binding Peritrophin-A domain32N
CBM_5_12PF02839Carbohydrate binding domain21N
CBM32PF18344Carbohydrate binding module family 3222N
CBSPF00571CBS domain11N
CC2-LZPF16516Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator11N
CCDC158PF15921Coiled-coil domain-containing protein 15811N
CCDC23PF15674Coiled-coil domain-containing protein 2362N
CCM2_CPF16545Cerebral cavernous malformation protein, harmonin-homology11N
CDC37_NPF03234Cdc37 N terminal kinase binding21N
CDC48_2PF02933Cell division protein 48 (CDC48), domain 285N
CDC48_NPF02359Cell division protein 48 (CDC48), N-terminal domain93N
Cdc6_CPF09079CDC6, C terminal winged helix domain11N
CdiIPF07262CDI immunity protein11N
cEGFPF12662Complement Clr-like EGF-like01N
CellulasePF00150Cellulase (glycosyl hydrolase family 5)11N
CENP-IPF07778Mis622N
CENP-KPF11802Centromere-associated protein K11N
CENP-T_CPF15511Centromere kinetochore component CENP-T histone fold31N
CFTR_RPF14396Cystic fibrosis TM conductance regulator (CFTR), regulator domain82N
CHPF00307Calponin homology (CH) domain65N
ChAPsPF09295ChAPs (Chs5p-Arf1p-binding proteins)11N
CHCHPF06747CHCH domain191N
CheRPF01739CheR methyltransferase, SAM binding domain11N
CHIPSPF11434Chemotaxis-inhibiting protein CHIPS11N
Chitin_bind_1PF00187Chitin recognition protein72N
Chloroa_b-bindPF00504Chlorophyll A-B binding protein1824N
CholecysA-Rec_NPF09193Cholecystokinin A receptor, N-terminal11N
Choline_kinasePF01633Choline/ethanolamine kinase11N
ChromoPF00385Chromo (CHRromatin Organisation MOdifier) domain5655Y
Chromo_shadowPF01393Chromo shadow domain43N
CI-B14_5aPF07347NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)21N
CIDPF04818CID domain2020N
CK_II_betaPF01214Casein kinase II regulatory subunit31N
CKSPF01111Cyclin-dependent kinase regulatory subunit11N
CLASP_NPF12348CLASP N terminal22N
Clat_adaptor_sPF01217Clathrin adaptor complex small chain124N
Clathrin_H_linkPF13838Clathrin-H-link91N
Clathrin_propelPF01394Clathrin propeller repeat1110N
ClenterotoxPF03505Clostridium enterotoxin11N
CLIP1_ZNFPF16641CLIP1 zinc knuckle11N
Clp_NPF02861Clp amino terminal domain, pathogenicity island component307N
CLP_proteasePF00574Clp protease3221N
ClpSPF02617ATP-dependent Clp protease adaptor protein ClpS1111N
CLTHPF10607CTLH/CRA C-terminal to LisH motif domain33N
CMASPF02353Mycolic acid cyclopropane synthetase11N
CN_hydrolasePF00795Carbon-nitrogen hydrolase11N
Cnd1PF12717non-SMC mitotic condensation complex subunit 154N
cNMP_bindingPF00027Cyclic nucleotide-binding domain22N
Cnn_1NPF07989Centrosomin N-terminal motif 114N
CNOT1_TTP_bindPF16417CCR4-NOT transcription complex subunit 1 TTP binding domain11N
Cohesin_HEATPF12765HEAT repeat associated with sister chromatid cohesion41N
Cohesin_loadPF10345Cohesin loading factor21N
CollagenPF01391Collagen triple helix repeat (20 copies)4439N
Collagen_bindPF05737Collagen binding domain11N
CollarPF07484Phage Tail Collar Domain11N
Complex1_30kDaPF00329Respiratory-chain NADH dehydrogenase, 30 Kd subunit82N
Complex1_49kDaPF00346Respiratory-chain NADH dehydrogenase, 49 Kd subunit86N
Complex1_51KPF01512Respiratory-chain NADH dehydrogenase 51 Kd subunit86N
Complex1_LYRPF05347Complex 1 protein (LYR family)122N
ComR_TPRPF18710ComR tetratricopeptide99N
CorC_HlyCPF03471Transporter associated domain11N
Cortex-I_coilPF09304Cortexillin I, coiled coil11N
Couple_hipAPF13657HipA N-terminal domain11N
CoV_EPF02723Coronavirus small envelope protein E21N
CoV_nucleocapPF00937Coronavirus nucleocapsid141N
CoV_peptidasePF08715Coronavirus papain-like peptidase22N
CoV_S2PF01601Coronavirus spike glycoprotein S253N
COX1PF00115Cytochrome C and Quinol oxidase polypeptide I568N
COX2PF00116Cytochrome C oxidase subunit II, periplasmic domain442N
COX2_TMPF02790Cytochrome C oxidase subunit II, transmembrane domain59N
COX2-transmembPF09125Cytochrome C oxidase subunit II, transmembrane036N
COX3PF00510Cytochrome c oxidase subunit III426N
COX4PF02936Cytochrome c oxidase subunit IV324N
COX5APF02284Cytochrome c oxidase subunit Va33N
COX6CPF02937Cytochrome c oxidase subunit VIc38N
COX7aPF02238Cytochrome c oxidase subunit VII34N
COX7CPF02935Cytochrome c oxidase subunit VIIc324N
CP12PF02672CP12 domain31N
Cpn60_TCP1PF00118TCP-1/cpn60 chaperonin family22N
CPSF_APF03178CPSF A subunit region119N
Creatinase_NPF01321Creatinase/Prolidase N-terminal domain44N
Creb_bindingPF09030Creb binding05N
CRFPF00473Corticotropin-releasing factor family61N
CRM1_CPF08767CRM1 C terminal311N
CRM1_repeat_3PF18787CRM1 / Exportin repeat 33232N
CRPV_capsidPF08762CRPV capsid protein like68N
CrystallinPF00525Alpha crystallin A chain, N terminal51N
CsgGPF03783Curli production assembly/transport component CsgG11N
Csm1PF12539Chromosome segregation protein Csm1/Pcs135N
Csm1_NPF18504Csm1 N-terminal domain01N
Ctf8PF09696Ctf825N
CtIP_NPF10482Tumour-suppressor protein CtIP N-terminal domain01N
CUBPF00431CUB domain32N
CullinPF00888Cullin family81N
Cullin_bindingPF03556Cullin binding66N
Cupin_2PF07883Cupin domain22N
Cupin_4PF08007Cupin superfamily protein46N
Cupin_8PF13621Cupin-like domain2322N
Curlin_rptPF07012Curlin associated repeat41N
CXCR4_NPF12109CXCR4 Chemokine receptor N terminal12N
Cyclin_CPF02984Cyclin, C-terminal domain251N
Cyclin_D1_bindPF12014Cyclin D1 binding domain11N
Cyclin_NPF00134Cyclin, N-terminal domain2728N
CyclotidePF03784Cyclotide family383N
CyRPAPF18638Cysteine-Rich Protective Antigen 6 bladed domain11N
Cys_knotPF00007Cystine-knot domain11N
Cyt_bd_oxida_IPF01654Cytochrome bd terminal oxidase subunit I22N
Cyt_c_ox_IVPF12270Cytochrome c oxidase subunit IV11N
Cytochrom_B_CPF00032Cytochrome b(C-terminal)/b6/petD231N
Cytochrom_B559PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits5452N
Cytochrom_B559aPF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit5554N
Cytochrom_B562PF07361Cytochrome b562131N
Cytochrom_C550PF14495Cytochrome c-550 domain5133N
Cytochrome_BPF00033Cytochrome b/b6/petB2213N
Dala_Dala_lig_NPF01820D-ala D-ala ligase N-terminus11N
DAP10PF07213DAP10 membrane protein04N
DAP3PF10236Mitochondrial ribosomal death-associated protein 3221N
DaxxPF03344Daxx N-terminal Rassf1C-interacting domain32N
Dcc1PF09724Sister chromatid cohesion protein Dcc125N
DCDPF065592'-deoxycytidine 5'-triphosphate deaminase (DCD)11N
DCP1PF06058Dcp1-like decapping family47N
DCP2PF05026Dcp2, box A domain34N
DCXPF03607Doublecortin11N
DEADPF00270DEAD/DEAH box helicase134N
DEDPF01335Death effector domain21N
Defensin_1PF00323Mammalian defensin245N
Defensin_betaPF00711Beta defensin11N
Desulfoferrod_NPF06397Desulfoferrodoxin, N-terminal domain01N
DHC_N1PF08385Dynein heavy chain, N-terminal region 132N
DHR-2PF06920Dock homology region 211N
DIM1PF02966Mitosis protein DIM101N
DipPF17679gp37/Dip protein11N
DivIVAPF05103DivIVA protein33N
DLICPF05783Dynein light intermediate chain (DLIC)51N
DNA_ligase_A_NPF04675DNA ligase N terminus33N
DNA_methylasePF00145C-5 cytosine-specific DNA methylase22N
DNA_pack_CPF02499Probable DNA packing protein, C-terminus11N
DNA_pol_APF00476DNA polymerase family A11N
DNA_pol_BPF00136DNA polymerase family B24N
DNA_pol_B_exo1PF03104DNA polymerase family B, exonuclease domain13N
DNA_pol_E_BPF04042DNA polymerase alpha/epsilon subunit B11N
DNA_pol3_betaPF00712DNA polymerase III beta subunit, N-terminal domain301N
DNA_pol3_beta_2PF02767DNA polymerase III beta subunit, central domain3030N
DNA_pol3_beta_3PF02768DNA polymerase III beta subunit, C-terminal domain3030N
DNA_pol3_chiPF04364DNA polymerase III chi subunit, HolC11N
DNA_pol3_gamma3PF12169DNA polymerase III subunits gamma and tau domain III11N
DNA_PPFPF02916DNA polymerase processivity factor22N
DnaBPF00772DnaB-like helicase N terminal domain11N
DnaJPF00226DnaJ domain62N
DnaJ_CPF01556DnaJ C terminal domain44N
DNAPKcs_CC5PF19704DNA-PKcs, CC511N
DNApol3-delta_CPF09115DNA polymerase III, delta subunit, C terminal11N
dNKPF01712Deoxynucleoside kinase218N
DNMT1-RFDPF12047Cytosine specific DNA methyltransferase replication foci domain12N
DotUPF09850Type VI secretion system protein DotU11N
DPPF08781Transcription factor DP01N
DP-EPPF08985DP-EP family61N
Dpp_8_9_NPF19520Dipeptidyl peptidase 8 and 9 N-terminal55N
DPPIV_NPF00930Dipeptidyl peptidase IV (DPP IV) N-terminal region1211N
DPPIV_repPF18811Dipeptidyl peptidase IV (DPP IV) low complexity region51N
Dpy-30PF05186Dpy-30 motif63N
Drf_FH3PF06367Diaphanous FH3 Domain22N
Drf_GBDPF06371Diaphanous GTPase-binding Domain22N
DSBAPF01323DSBA-like thioredoxin domain55N
DsbBPF02600Disulfide bond formation protein DsbB11N
DSPcPF00782Dual specificity phosphatase, catalytic domain85N
DSPnPF14671Dual specificity protein phosphatase, N-terminal half55N
DUF1077PF06417Protein of unknown function (DUF1077)33N
DUF1241PF06840Protein of unknown function (DUF1241)45N
DUF1323PF07037Putative transcription regulator (DUF1323)01N
DUF1325PF07039SGF29 tudor-like domain88N
DUF1681PF07933Protein of unknown function (DUF1681)21N
DUF1897PF09005Domain of unknown function (DUF1897)11N
DUF1968PF09291Domain of unknown function (DUF1968)2101N
DUF2312PF10073Uncharacterized protein conserved in bacteria (DUF2312)25N
DUF2383PF09537Domain of unknown function (DUF2383)04N
DUF257PF03192Pyrococcus protein of unknown function, DUF25711N
DUF3152PF11350Protein of unknown function (DUF3152)55N
DUF3215PF11503Protein of unknown function (DUF3215)01N
DUF3361PF11841Domain of unknown function (DUF3361)11N
DUF3385PF11865Domain of unknown function (DUF3385)01N
DUF3458_CPF17432Domain of unknown function (DUF3458_C) ARM repeats11N
DUF4379PF14311Probable Zinc-ribbon domain61N
DUF4461PF14688Domain of unknown function (DUF4461)33N
DUF4927PF16279Domain of unknown function (DUF4927)1337N
DUF4951PF16309Domian of unknown function (DUF4951)11N
DUF5089PF17002Domain of unknown function (DUF5089)15N
DUF5517PF17639Family of unknown function (DUF5517)02N
DUF5595PF18077Domain of unknown function (DUF5595)11N
DUF5604PF18300Domain of unknown function (DUF5604)61N
DUF5838PF19156Family of unknown function (DUF5838)22N
DUF592PF04574Protein of unknown function (DUF592)31N
DUF5950PF19375Family of unknown function (DUF5950)22N
DUF5973PF19398Family of unknown function (DUF5973)72N
DUF903PF06004Bacterial protein of unknown function (DUF903)11N
dUTPasePF00692dUTPase33N
Dynamin_MPF01031Dynamin central region11N
Dynein_lightPF01221Dynein light chain type 12323Y
E1_dhPF00676Dehydrogenase E1 component33N
E1-E2_ATPasePF00122E1-E2 ATPase1311N
E2F_CC-MBPF16421E2F transcription factor CC-MB domain01N
EABRPF12180TSG101 and ALIX binding domain of CEP5544N
EB1PF03271EB1-like C-terminal motif33N
EB1_bindingPF05937EB-1 Binding Domain41N
Ebola_NPPF05505Ebola nucleoprotein73N
ECH_2PF16113Enoyl-CoA hydratase/isomerase63N
EFG_CPF00679Elongation factor G C-terminus561N
EFG_IIIPF14492Elongation Factor G, domain III524N
EFG_IVPF03764Elongation factor G, domain IV506N
EF-hand_1PF00036EF hand2729Y
EF-hand_14PF17959EF-hand domain11N
EF-hand_2PF09068EF hand11N
EF-hand_3PF09069EF-hand11N
EF-hand_4PF12763Cytoskeletal-regulatory complex EF hand66N
EF-hand_5PF13202EF hand02N
EF-hand_6PF13405EF-hand domain33N
EF-hand_7PF13499EF-hand domain pair127147Y
EF-hand_8PF13833EF-hand domain pair1011Y
EFhand_Ca_insenPF08726Ca2+ insensitive EF hand22N
EFP_NPF08207Elongation factor P (EF-P) KOW-like domain81N
eIF2_CPF09173Initiation factor eIF2 gamma, C terminal203N
eIF2APF08662Eukaryotic translation initiation factor eIF2A111N
eIF-3c_NPF05470Eukaryotic translation initiation factor 3 subunit 8 N-terminus132N
eIF3gPF12353Eukaryotic translation initiation factor 3 subunit G81N
ELMO_CED12PF04727ELMO/CED-12 family11N
EMC1_CPF07774ER membrane protein complex subunit 1, C-terminal41N
EMC3_TMCO1PF01956Integral membrane protein EMC3/TMCO1-like52N
EMC6PF07019EMC662N
EMP24_GP25LPF01105emp24/gp25L/p24 family/GOLD21N
EndothelinPF00322Endothelin family142N
EnkurinPF13864Calmodulin-binding01N
Enolase_CPF00113Enolase, C-terminal TIM barrel domain43N
Enolase_NPF03952Enolase, N-terminal domain53N
EnY2PF10163Transcription factor e(y)223N
EphA2_TMPF14575Ephrin type-A receptor 2 transmembrane domain22N
Ephrin_lbdPF01404Ephrin receptor ligand binding domain1212N
EpoR_lig-bindPF09067Erythropoietin receptor, ligand binding22N
ERPF01133Enhancer of rudimentary01N
ER_lumen_receptPF00810ER lumen protein retaining receptor33N
ERAP1_CPF11838ERAP1-like C-terminal domain1411N
eRF1_2PF03464eRF1 domain 2207N
ERp29PF07749Endoplasmic reticulum protein ERp29, C-terminal domain02N
EspGPF06872EspG protein11N
ESSSPF10183ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)21N
EST1PF10374Telomerase activating protein Est111N
EST1_DNA_bindPF10373Est1 DNA/RNA binding domain11N
ETC_C1_NDUFA4PF04800ETC complex I subunit conserved region63N
EtsPF00178Ets-domain22N
Ets1_N_flankPF19525Ets1 N-terminal flanking region of Ets domain22N
ExbDPF02472Biopolymer transport protein ExbD/TolR21N
Exo_endo_phosPF03372Endonuclease/Exonuclease/phosphatase family43N
Exonuc_X-T_CPF08411Exonuclease C-terminal11N
Exportin-5PF19273Exportin-5 family22N
EZH2_NPF18601EZH2 N-terminal domain43N
EzrAPF06160Septation ring formation regulator, EzrA02N
F_actin_cap_BPF01115F-actin capping protein, beta subunit1510N
F1F0-ATPsyn_FPF10791Mitochondrial F1-F0 ATP synthase subunit F of fungi16N
F5_F8_type_CPF00754F5/8 type C domain97N
F-actin_cap_APF01267F-actin capping protein alpha subunit206N
FAD_binding_4PF01565FAD binding domain21N
FAD_binding_9PF08021Siderophore-interacting FAD-binding domain11N
FAM181PF15238FAM18132N
Fanconi_A_NPF15865Fanconi anaemia group A protein N terminus03N
FATPF02259FAT domain43N
FATCPF02260FATC domain21N
FBXL18_CPF19729F-box/LRR-repeat protein 18 C-terminal76N
Fe_dep_repressPF01325Iron dependent repressor, N-terminal DNA binding domain02N
FemABPF02388FemAB family33N
FeoB_NPF02421Ferrous iron transport protein B11N
Fer2_3PF130852Fe-2S iron-sulfur cluster binding domain01N
Fer4_24PF18109Ferredoxin I 4Fe-4S cluster domain01N
Fer4_8PF131834Fe-4S dicluster domain01N
FERM_CPF09380FERM C-terminal PH-like domain1110Y
FERM_F1PF18379FERM F1 ubiquitin-like domain02N
FERM_F2PF18377FERM F2 acyl-CoA binding protein-like domain02N
FERM_MPF00373FERM central domain2110N
FERM_NPF09379FERM N-terminal domain113N
FerritinPF00210Ferritin-like domain04N
FGE-sulfatasePF03781Sulfatase-modifying factor enzyme 11313N
FHAPF00498FHA domain3231Y
FHA_2PF17913FHA domain22N
Fib_alphaPF08702Fibrinogen alpha/beta chain family253N
Fibrinogen_CPF00147Fibrinogen beta and gamma chains, C-terminal globular domain2626N
Fibritin_CPF07921Fibritin C-terminal region85N
FicPF02661Fic/DOC family21N
FilaminPF00630Filamin/ABP280 repeat77N
Filo_VP35PF02097Filoviridae VP3541N
FimbrialPF00419Fimbrial protein1610N
FimH_man-bindPF09160FimH, mannose binding109N
Fip1PF05182Fip1 motif01N
Fis1_TPR_NPF14852Fis1 N-terminal tetratricopeptide repeat01N
FKBP_CPF00254FKBP-type peptidyl-prolyl cis-trans isomerase129N
Flavi_glycoprotPF00869Flavivirus glycoprotein, central and dimerisation domains81N
Flavi_NS2BPF01002Flavivirus non-structural protein NS2B108N
FlavoproteinPF02441Flavoprotein11N
FliG_NPF14842FliG N-terminal domain01N
FliMN_CPF01052Type III flagellar switch regulator (C-ring) FliN C-term11N
FliTPF05400Flagellar protein FliT11N
Flo11PF10182Flo11 domain11N
Flu_B_M2PF04772Influenza B matrix protein 2 (BM2)02N
Flu_M2PF00599Influenza Matrix protein (M2)3220N
Flu_NPPF00506Influenza virus nucleoprotein335N
Flu_PAPF00603Influenza RNA-dependent RNA polymerase subunit PA157N
Flu_PB1PF00602Influenza RNA-dependent RNA polymerase subunit PB1102N
Flu_PB2PF00604Influenza RNA-dependent RNA polymerase subunit PB261N
FmiP_Thoc5PF09766Fms-interacting protein/Thoc501N
Fn_bindPF02986Fibronectin binding repeat32N
fn1PF00039Fibronectin type I domain88N
fn2PF00040Fibronectin type II domain11N
fn3PF00041Fibronectin type III domain1910N
Focal_ATPF03623Focal adhesion targeting region1212N
FPN1PF06963Ferroportin1 (FPN1)11N
F-proteinPF00469Negative factor, (F-Protein) or Nef417N
FR47PF08445FR47-like protein11N
FragX_IPPF05994Cytoplasmic Fragile-X interacting family11N
FRB_domPF08771FKBP12-rapamycin binding domain21N
FtsAPF14450Cell division protein FtsA11N
FtsK_SpoIIIEPF01580FtsK/SpoIIIE family21N
FtsQPF03799Cell division protein FtsQ12N
FtsZ_CPF12327FtsZ family, C-terminal domain11N
Fun_ATP-synt_8PF05933Fungal ATP synthase protein 8 (A6L)15N
Fungal_lectinPF07938Fungal fucose-specific lectin11N
Fusion_glyPF00523Fusion glycoprotein F061N
FUT8_N_catPF19745Alpha-(1,6)-fucosyltransferase N- and catalytic domains22N
FXMRP1_C_corePF12235Fragile X-related 1 protein core C terminal61N
Gag_p17PF00540gag gene protein p17 (matrix protein)181N
Gag_p24PF00607gag protein p24 N-terminal domain1711N
Gag_p24_CPF19317Gag protein p24 C-terminal domain2913N
Gag_spumaPF03276Spumavirus gag protein21N
GAINPF16489GPCR-Autoproteolysis INducing (GAIN) domain21N
Gal11_ABD1PF18535Gal11 activator-binding domain (ABD1)01N
Gal-bind_lectinPF00337Galactoside-binding lectin22N
GalliderminPF02052Gallidermin31N
G-alphaPF00503G-protein alpha subunit2911N
Gamma_PGA_hydroPF05908Poly-gamma-glutamate hydrolase11N
Gamma-thioninPF00304Gamma-thionin family188N
GASPF13851Growth-arrest specific micro-tubule binding12N
GATAPF00320GATA zinc finger12N
GBP_CPF02841Guanylate-binding protein, C-terminal domain01N
GCP_N_terminalPF17681Gamma tubulin complex component N-terminal14N
GelsolinPF00626Gelsolin repeat205N
Gemin6PF06372Gemin6 protein01N
Gemin7PF11095Gem-associated protein 7 (Gemin7)01N
GerEPF00196Bacterial regulatory proteins, luxR family21N
GET4PF04190Golgi to ER traffic protein 411N
Get5_CPF18514Get5 C-terminal domain01N
GFO_IDH_MocAPF01408Oxidoreductase family, NAD-binding Rossmann fold22N
GFO_IDH_MocA_CPF02894Oxidoreductase family, C-terminal alpha/beta domain22N
GFPPF01353Green fluorescent protein01N
G-gammaPF00631GGL domain241N
GIT_SHDPF08518Spa2 homology domain (SHD) of GIT11N
GIT1_CPF12205G protein-coupled receptor kinase-interacting protein 1 C term13N
GLE1PF07817GLE1-like protein04N
GLEYAPF10528GLEYA domain11N
Gln-synt_CPF00120Glutamine synthetase, catalytic domain11N
Gln-synt_NPF03951Glutamine synthetase, beta-Grasp domain11N
GlucosaminidasePF01832Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase11N
GlutaredoxinPF00462Glutaredoxin32N
Glyco_hydro_1PF00232Glycosyl hydrolase family 123N
Glyco_hydro_18PF00704Glycosyl hydrolases family 181818N
Glyco_hydro_30PF02055Glycosyl hydrolase family 30 TIM-barrel domain11N
Glyco_tran_28_CPF04101Glycosyltransferase family 28 C-terminal domain43N
Glyco_transf_24PF18404Glucosyltransferase 2407N
Glyco_transf_28PF03033Glycosyltransferase family 28 N-terminal domain43N
Glyco_transf_41PF13844Glycosyl transferase family 412929N
Glyco_transf_90PF05686Glycosyl transferase family 9002N
Glycogen_synPF05693Glycogen synthase22N
GlycolyticPF00274Fructose-bisphosphate aldolase class-I45N
Glycophorin_APF01102Glycophorin A32N
Glycos_trans_3NPF02885Glycosyl transferase family, helical bundle domain11N
Glycos_transf_2PF00535Glycosyl transferase family 21812N
GMP_PDE_deltaPF05351GMP-PDE, delta subunit66N
GNAT_CPF18164GNAT-like C-terminal domain33N
GnRHPF00446Gonadotropin-releasing hormone31N
GNT-IPF03071GNT-I family11N
GntRPF00392Bacterial regulatory proteins, gntR family12N
GOLD_2PF13897Golgi-dynamics membrane-trafficking05N
Gp_dh_CPF02800Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain33N
Gp_dh_NPF00044Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain33N
GP120PF00516Envelope glycoprotein GP1209119N
Gp23PF07068Major capsid protein Gp2311N
GP41PF00517Retroviral envelope protein9633N
gp45-slide_CPF09116gp45 sliding clamp, C terminal22N
G-patch_2PF12656G-patch domain01N
GPSPF01825GPCR proteolysis site, GPS, motif31N
GramPos_pilinD1PF16555Gram-positive pilin subunit D1, N-terminal domain11N
GRASPF03514GRAS domain family12N
GRASP55_65PF04495GRASP55/65 PDZ-like domain44N
GRIM-19PF06212GRIM-19 protein61N
GSDHPF07995Glucose / Sorbosone dehydrogenase11N
GSHPxPF00255Glutathione peroxidase33N
GST_CPF00043Glutathione S-transferase, C-terminal domain32N
GST_C_3PF14497Glutathione S-transferase, C-terminal domain11N
GST_NPF02798Glutathione S-transferase, N-terminal domain55N
GTP_EFTUPF00009Elongation factor Tu GTP binding domain12212N
GTP_EFTU_D2PF03144Elongation factor Tu domain 211810N
GTP_EFTU_D3PF03143Elongation factor Tu C-terminal domain261N
Guanylate_kinPF00625Guanylate kinase1413N
GYFPF02213GYF domain22N
HA2PF04408Helicase associated domain (HA2)35N
Haspin_kinasePF12330Haspin like kinase domain33N
HATPF02184HAT (Half-A-TPR) repeat21N
HAT_KAT11PF08214Histone acetylation protein11N
Hat1_NPF10394Histone acetyl transferase HAT1 N-terminus33N
HCV_NS1PF01560Hepatitis C virus non-structural protein E2/NS1271N
HCV_NS4aPF01006Hepatitis C virus non-structural protein NS4a5134N
HEATPF02985HEAT repeat104N
HEAT_2PF13646HEAT repeats3410N
HEAT_EZPF13513HEAT-like repeat1923N
Helicase_CPF00271Helicase conserved C-terminal domain1813N
HemagglutininPF00509Haemagglutinin437N
HemopexinPF00045Hemopexin33N
Herpes_glycoH_CPF17488Herpesvirus glycoprotein H C-terminal domain01N
Herpes_glycop_HPF02489Herpesvirus glycoprotein H main domain11N
Herpes_PAPPF03325Herpesvirus polymerase accessory protein11N
Herpes_TAF50PF03326Herpesvirus transcription activation factor (transactivator)11N
Herpes_UL49_2PF04823Herpesvirus UL49 tegument protein11N
HetR_CPF18460Heterocyst differentiation regulator C-terminal Hood domain11N
HexapepPF00132Bacterial transferase hexapeptide (six repeats)135N
HHH_5PF14520Helix-hairpin-helix domain31N
HipA_CPF07804HipA-like C-terminal domain11N
HipNPF18253Hsp70-interacting protein N N-terminal domain01N
HIRA_BPF09453HIRA B motif11N
His_Phos_1PF00300Histidine phosphatase superfamily (branch 1)11N
Hist_deacetylPF00850Histone deacetylase domain1919N
HistonePF00125Core histone H2A/H2B/H3/H440830N
Histone_H2A_CPF16211C-terminus of histone H2A1913N
Histone_HNSPF00816H-NS histone family01N
HITPF01230HIT domain11N
Hit1_CPF18268Hit1 C-terminal01N
HLHPF00010Helix-loop-helix DNA-binding domain02N
HMGL-likePF00682HMGL-like11N
HNF-1_NPF04814Hepatocyte nuclear factor 1 (HNF-1), N terminus01N
Hom_end_hintPF05203Hom_end-associated Hint13N
HomeodomainPF00046Homeodomain132N
HomezPF11569Homeodomain leucine-zipper encoding, Homez11N
HOOK_NPF19047HOOK domain11N
HORMAPF02301HORMA domain2425Y
Hormone_2PF00123Peptide hormone311N
Hormone_3PF00159Pancreatic hormone peptide91N
Hormone_4PF00220Neurohypophysial hormones, N-terminal Domain71N
Hormone_5PF00184Neurohypophysial hormones, C-terminal Domain22N
Hormone_recepPF00104Ligand-binding domain of nuclear hormone receptor779779N
HRMPF02793Hormone receptor domain2743Y
HSAPF07529HSA31N
HSM3_CPF18794DNA mismatch repair protein HSM3, C terminal domain11N
HSP20PF00011Hsp20/alpha crystallin family1510N
HSP70PF00012Hsp70 protein4142Y
HTH_11PF08279HTH domain01N
HTH_3PF01381Helix-turn-helix113N
HTH_8PF02954Bacterial regulatory protein, Fis family11N
HTH_9PF08221RNA polymerase III subunit RPC82 helix-turn-helix domain01N
HTH_Crp_2PF13545Crp-like helix-turn-helix domain11N
IATPPF04568Mitochondrial ATPase inhibitor, IATP71N
IBBPF01749Importin beta binding domain821N
IBN_NPF03810Importin-beta N-terminal domain502N
ICAP-1_inte_bdgPF10480Beta-1 integrin binding protein22N
IF4EPF01652Eukaryotic initiation factor 4E2730N
IFNGR1PF07140Interferon gamma receptor (IFNGR1)02N
igPF00047Immunoglobulin domain3113N
Ig_2PF13895Immunoglobulin domain175N
Ig_3PF13927Immunoglobulin domain115N
Ig_6PF18452Immunoglobulin domain11N
Il13Ra_IgPF18001Interleukin-13 receptor subunit alpha Ig-like domain11N
IL17PF06083Interleukin-1766N
IL23PF16649Interleukin 23 subunit alpha11N
IL6Ra-bindPF09240Interleukin-6 receptor alpha chain, binding11N
IL8PF00048Small cytokines (intecrine/chemokine), interleukin-8 like67N
Ilar_coatPF01787Ilarvirus coat protein11N
ILEIPF15711Interleukin-like EMT inducer22N
IMDPF08397IRSp53/MIM homology domain11N
IMPa_N_2PF18650Immunomodulating metalloprotease N-terminal domain11N
ImpEPF07024ImpE protein11N
Importin_rep_4PF18808Importin repeat43N
Importin_rep_5PF18816Importin repeat54N
Importin_rep_6PF18829Importin repeat 654N
IN_DBD_CPF00552Integrase DNA binding domain01N
IncEPF17627Inclusion membrane protein E64N
Inhibitor_I67PF11405Bromelain inhibitor VI22N
InsulinPF00049Insulin/IGF/Relaxin family36713N
Insulin_TMDPF17870Insulin receptor trans-membrane segment53N
Integrase_ZnPF02022Integrase Zinc binding domain11N
Integrin_b_cytPF08725Integrin beta cytoplasmic domain107N
Integrin_B_tailPF07965Integrin beta tail domain12N
Integrin_betaPF00362Integrin beta chain VWA domain2022N
InvHPF04741InvH outer membrane lipoprotein12N
Ion_transPF00520Ion transport protein128N
Ion_trans_2PF07885Ion channel01N
iPGM_NPF06415BPG-independent PGAM N-terminus (iPGM_N)11N
IQPF00612IQ calmodulin-binding motif73N
IRF-3PF10401Interferon-regulatory factor 346N
IRK_CPF17655Inward rectifier potassium channel C-terminal domain11N
IRSPF02174PTB domain (IRS-1 type)1516Y
Iso_dhPF00180Isocitrate/isopropylmalate dehydrogenase21N
IspDPF011282-C-methyl-D-erythritol 4-phosphate cytidylyltransferase11N
Ist1PF03398Regulator of Vps4 activity in the MVB pathway11N
JABPF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease145N
JacalinPF01419Jacalin-like lectin domain3232N
JHDPF17811Jumonji helical domain1111N
JmjCPF02373JmjC domain, hydroxylase4339N
KaiAPF07688KaiA C-terminal domain11N
KASHPF10541Nuclear envelope localisation domain11N
Katanin_con80PF13925con80 domain of Katanin22N
Kazal_1PF00050Kazal-type serine protease inhibitor domain31N
Kazal_2PF07648Kazal-type serine protease inhibitor domain11N
KdpAPF03814Potassium-transporting ATPase A subunit88N
Kelch_1PF01344Kelch motif2525N
Kelch_3PF13415Galactose oxidase, central domain55N
Kelch_4PF13418Galactose oxidase, central domain33N
ketoacyl-syntPF00109Beta-ketoacyl synthase, N-terminal domain11N
KH_1PF00013KH domain41N
KH_2PF07650KH domain5734N
KH_6PF15985KH domain02N
KH_8PF17903Krr1 KH1 domain21N
KilA-NPF04383KilA-N domain33N
KINDPF16474Kinase non-catalytic C-lobe domain22N
KinesinPF00225Kinesin motor domain22N
KIXPF02172KIX domain68N
Knl1_RWD_CPF18210Knl1 RWD C-terminal domain11N
KOWPF00467KOW motif5206N
KuPF02735Ku70/Ku80 beta-barrel domain41N
Ku_NPF03731Ku70/Ku80 N-terminal alpha/beta domain1110N
Kunitz_BPTIPF00014Kunitz/Bovine pancreatic trypsin inhibitor domain92N
LactonasePF10282Lactonase, 7-bladed beta-propeller53N
Laminin_EGFPF00053Laminin EGF domain11N
Lant_dehydr_CPF14028Lantibiotic biosynthesis dehydratase C-term12N
Lant_dehydr_NPF04738Lantibiotic dehydratase, N terminus01N
Lantibiotic_aPF14867Lantibiotic alpha41N
Ldl_recept_bPF00058Low-density lipoprotein receptor repeat class B22N
LebercilinPF15619Ciliary protein causing Leber congenital amaurosis disease01N
Lectin_CPF00059Lectin C-type domain114N
Lectin_legBPF00139Legume lectin domain1414N
LEDGFPF11467Lens epithelium-derived growth factor (LEDGF)22N
Leu_Phe_transPF03588Leucyl/phenylalanyl-tRNA protein transferase22N
Leuk-A4-hydro_CPF09127Leukotriene A4 hydrolase, C-terminal33N
LHCPF00556Antenna complex alpha/beta subunit210N
LIAS_NPF16881N-terminal domain of lipoyl synthase of Radical_SAM family11N
LIDPF17916LIM interaction domain (LID)02N
LIMPF00412LIM domain44N
LIN52PF10044Retinal tissue protein21N
LIN9_CPF19438LIN9 C-terminal01N
Linocin_M18PF04454Encapsulating protein for peroxidase22N
LipocalinPF00061Lipocalin / cytosolic fatty-acid binding protein family33N
Lipoprotein_1PF00820Borrelia lipoprotein11N
LMWPcPF01451Low molecular weight phosphotyrosine protein phosphatase31N
LON_substr_bdgPF02190ATP-dependent protease La (LON) substrate-binding domain11N
LPPPF04728Lipoprotein leucine-zipper44N
LptD_NPF03968LptA/(LptD N-terminal domain) LPS transport protein11N
LRR_4PF12799Leucine Rich repeats (2 copies)129N
LRR_8PF13855Leucine rich repeat2523N
LRRNT_2PF08263Leucine rich repeat N-terminal domain194N
LSM14PF12701Scd6-like Sm domain11N
LUC7PF03194LUC7 N_terminus01N
LysPF00062C-type lysozyme/alpha-lactalbumin family61N
LysMPF01476LysM domain63N
LysR_substratePF03466LysR substrate binding domain22N
M11LPF11099Apoptosis regulator M11L like1212N
MA3PF02847MA3 domain31N
MADPF05557Mitotic checkpoint protein33N
Mad3_BUB1_IPF08311Mad3/BUB1 homology region 141N
Mad3_BUB1_IIPF08171Mad3/BUB1 homology region 211N
MAJINPF15077Membrane-anchored junction protein02N
Mak10PF04112Mak10 subunit, NatC N(alpha)-terminal acetyltransferase22N
Malectin_likePF12819Malectin-like domain11N
MA-MitPF09245Mycoplasma arthritidis-derived mitogen33N
MarRPF01047MarR family11N
MarR_2PF12802MarR family11N
MAS20PF02064MAS20 protein import receptor88N
MatEPF01554MatE33N
MATHPF00917MATH domain5050Y
MBF1PF08523Multiprotein bridging factor 102N
MBTPF02820mbt repeat1011Y
Mcl1_midPF12341Minichromosome loss protein, Mcl1, middle region51N
MCM6_CPF18263MCM6 C-terminal winged-helix domain11N
MCPVIPF02993Minor capsid protein VI132N
Med1PF10744Mediator of RNA polymerase II transcription subunit 111N
Med17PF10156Subunit 17 of Mediator complex33N
Med18PF09637Med18 protein41N
Med22PF06179Surfeit locus protein 5 subunit 22 of Mediator complex31N
Med26PF08711TFIIS helical bundle-like domain23N
Med31PF05669SOH121N
Med6PF04934MED6 mediator sub complex component32N
Med7PF05983MED7 protein21N
Med8PF10232Mediator of RNA polymerase II transcription complex subunit 833N
MelittinPF01372Melittin82N
MeninPF05053Menin55N
MerR-DNA-bindPF09278MerR, DNA binding21N
MetalloenzymePF01676Metalloenzyme superfamily11N
MetallopepPF12044Putative peptidase family22N
MetallophosPF00149Calcineurin-like phosphoesterase2933N
Metallophos_2PF12850Calcineurin-like phosphoesterase superfamily domain22N
Methyltrans_MonPF14314Virus-capping methyltransferase01N
Methyltransf_25PF13649Methyltransferase domain1714N
Methyltransf_31PF13847Methyltransferase domain11N
Methyltransf_5PF01795MraW methylase family32N
Methyltransf_PKPF05891AdoMet dependent proline di-methyltransferase1717N
MG1PF17790Macroglobulin domain MG111N
MG2PF01835MG2 domain11N
MG4PF17789Macroglobulin domain MG411N
MH2PF03166MH2 domain22N
MHC_IPF00129Class I Histocompatibility antigen, domains alpha 1 and 210101003N
MHC_I_3PF16497MHC-I family domain32N
MHC_II_alphaPF00993Class II histocompatibility antigen, alpha domain155148N
MHC_II_betaPF00969Class II histocompatibility antigen, beta domain148147N
MIB_HERC2PF06701Mib_herc222N
MIF4GPF02854MIF4G domain53N
MIF4G_likePF09088MIF4G like12N
MIF4G_like_2PF09090MIF4G like12N
MITPF04212MIT (microtubule interacting and transport) domain1713N
MitMem_regPF13012Maintenance of mitochondrial structure and function132N
Mlh1_CPF16413DNA mismatch repair protein Mlh1 C-terminus22N
Mltc_NPF11873Membrane-bound lytic murein transglycosylase C, N-terminal domain11N
MmlIPF09448Methylmuconolactone methyl-isomerase11N
MMS1_NPF10433Mono-functional DNA-alkylating methyl methanesulfonate N-term1110N
Mo25PF08569Mo25-like33N
Mob1_phoceinPF03637Mob1/phocein family66N
MobCPF05713Bacterial mobilisation protein (MobC)02N
MoCF_biosynthPF00994Probable molybdopterin binding domain1010N
Mod_rPF07200Modifier of rudimentary (Mod(r)) protein11N
MoeA_CPF03454MoeA C-terminal region (domain IV)1010N
MoeA_NPF03453MoeA N-terminal region (domain I and II)1010N
MolybdopterinPF00384Molybdopterin oxidoreductase63N
Mononeg_RNA_polPF00946Mononegavirales RNA dependent RNA polymerase31N
Monooxygenase_BPF04744Monooxygenase subunit B protein51N
Morc6_S5PF17942Morc6 ribosomal protein S5 domain 2-like12N
MORNPF02493MORN repeat23N
MotA_ExbBPF01618MotA/TolQ/ExbB proton channel family22N
Motile_SpermPF00635MSP (Major sperm protein) domain44N
MOZ_SASPF01853MOZ/SAS family23N
mRNA_cap_CPF03919mRNA capping enzyme, C-terminal domain41N
mRNA_cap_enzymePF01331mRNA capping enzyme, catalytic domain43N
mRNA_triPasePF02940mRNA capping enzyme, beta chain11N
MRP-L27PF09809Mitochondrial ribosomal protein L27183N
MRP-L28PF09812Mitochondrial ribosomal protein L28171N
MRP-L47PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47)233N
MRP-S28PF10213Mitochondrial ribosomal subunit protein229N
MRP-S31PF15433Mitochondrial 28S ribosomal protein S31147N
MRP-S33PF08293Mitochondrial ribosomal subunit S27177N
MSA_2PF00985Merozoite Surface Antigen 2 (MSA-2) family11N
MscLPF01741Large-conductance mechanosensitive channel, MscL11N
MSPPF01716Manganese-stabilising protein / photosystem II polypeptide521N
Mst1_SARAHPF11629C terminal SARAH domain of Mst171N
Mt_ATP-synt_BPF05405Mitochondrial ATP synthase B chain precursor (ATP-synt_B)910N
Mt_ATP-synt_DPF05873ATP synthase D chain, mitochondrial (ATP5H)96N
Mtf2_CPF14061Polycomb-like MTF2 factor 211N
MTSPF05175Methyltransferase small domain11N
Mucin15PF15672Cell-membrane associated Mucin1504N
muHDPF10291Muniscin C-terminal mu homology domain33N
MUNPF06292MUN domain11N
MxiMPF11441Pilot protein MxiM11N
Myc-LZPF02344Myc leucine zipper domain32N
Myosin_NPF02736Myosin N-terminal SH3-like domain11N
Myosin-VI_CBDPF16521Myosin VI cargo binding domain11N
N_Asn_amidohydPF14736Protein N-terminal asparagine amidohydrolase22N
N2227PF07942N2227-like protein21N
Na_K-ATPasePF00287Sodium / potassium ATPase beta chain22N
Nab2PF11517Nuclear abundant poly(A) RNA-bind protein 2 (Nab2)11N
Nab6_mRNP_bdgPF10567RNA-recognition motif87N
NAD_binding_1PF00175Oxidoreductase NAD-binding domain11N
NAD_binding_11PF14833NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase22N
NADH_dehy_S2_CPF06444NADH dehydrogenase subunit 2 C-terminus24N
NADH5_CPF06455NADH dehydrogenase subunit 5 C-terminus56N
NADHdhPF00146NADH dehydrogenase84N
NADHdh_A3PF14987NADH dehydrogenase 1 alpha subcomplex subunit 351N
NAGidasePF07555beta-N-acetylglucosaminidase1311N
NAPPF00956Nucleosome assembly protein (NAP)21N
NARP1PF12569NMDA receptor-regulated protein 173N
NAT_NPF18082N-acyltransferase N-terminal domain33N
NatB_MDM20PF09797N-acetyltransferase B complex (NatB) non catalytic subunit21N
NB-ARCPF00931NB-ARC domain44N
Nckap1PF09735Membrane-associated apoptosis protein11N
NDNF_CPF19433Neuron-derived Neurotrophic Factor C-terminal11N
NDUF_B12PF08122NADH-ubiquinone oxidoreductase B12 subunit family21N
NDUF_B7PF05676NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)21N
NDUF_C2PF06374NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2)520N
Ndufs5PF10200NADH:ubiquinone oxidoreductase, NDUFS5-15kDa51N
Neisseria_PilCPF05567Neisseria PilC beta-propeller domain11N
Neur_chan_LBDPF02931Neurotransmitter-gated ion-channel ligand binding domain2312N
Neur_chan_membPF02932Neurotransmitter-gated ion-channel transmembrane region81N
Nha1_CPF08619Alkali metal cation/H+ antiporter Nha1 C terminus11N
NHR2PF08788NHR2 domain like11N
NIFPF03031NLI interacting factor-like phosphatase66N
NitrophorinPF02087Nitrophorin11N
NMDAR2_CPF10565N-methyl D-aspartate receptor 2B3 C-terminus104N
NMTPF01233Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain1313N
NMT_CPF02799Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain1313N
NO_synthasePF02898Nitric oxide synthase, oxygenase domain11N
Not1PF04054CCR4-Not complex component, Not111N
NPL4PF05021NPL4 family11N
NRIP1_repr_2PF15688Nuclear receptor-interacting protein 1 repression 291N
Nsp1_CPF05064Nsp1-like C-terminal region11N
Nt_Gln_amidasePF09764N-terminal glutamine amidase11N
NTF2PF02136Nuclear transport factor 2 (NTF2) domain77N
NUC194PF08163NUC194 domain11N
Nucleoporin_CPF03177Non-repetitive/WGA-negative nucleoporin C-terminal11N
Nucleoporin_FG2PF15967Nucleoporin FG repeated region13N
Nucleoporin_NPF08801Nup133 N terminal like01N
Nucleoporin2PF04096Nucleoporin autopeptidase13N
NUDIXPF00293NUDIX domain63N
Nup54_CPF18437Nup54 C-terminal interacting domain05N
NYD-SP28_assocPF14775Sperm tail C-terminal domain01N
OB_NTP_bindPF07717Oligonucleotide/oligosaccharide-binding (OB)-fold35N
OCREPF17780OCRE domain31N
O-FucTPF10250GDP-fucose protein O-fucosyltransferase05N
Omp85PF01103Omp85 superfamily domain22N
OmpAPF00691OmpA family22N
OmptinPF01278Omptin family11N
Op_neuropeptidePF08035Opioids neuropeptide01N
ORC_WH_CPF18137Origin recognition complex winged helix C-terminal11N
ORC2PF04084Origin recognition complex subunit 212N
ORC3_NPF07034Origin recognition complex (ORC) subunit 3 N-terminus11N
ORC5_CPF14630Origin recognition complex (ORC) subunit 5 C-terminus12N
OSCPPF00213ATP synthase delta (OSCP) subunit106N
OSR1_CPF12202Oxidative-stress-responsive kinase 1 C-terminal domain22N
OST3_OST6PF04756OST3 / OST6 family, transporter family65N
OTUPF02338OTU-like cysteine protease11N
Oxidored_q2PF00420NADH-ubiquinone/plastoquinone oxidoreductase chain 4L72N
Oxidored_q3PF00499NADH-ubiquinone/plastoquinone oxidoreductase chain 672N
Oxidored_q4PF00507NADH-ubiquinone/plastoquinone oxidoreductase, chain 371N
Oxidored_q5_NPF01059NADH-ubiquinone oxidoreductase chain 4, amino terminus39N
Oxidored_q6PF01058NADH ubiquinone oxidoreductase, 20 Kd subunit81N
P_proproteinPF01483Proprotein convertase P-domain201N
P3APF08727Poliovirus 3A protein like02N
P53_tetramerPF07710P53 tetramerisation motif06N
P66_CCPF16563Coiled-coil and interaction region of P66A and P66B with MBD201N
PAPF02225PA domain22N
PABPPF00658Poly-adenylate binding protein, unique domain1515N
PADPF03068Protein-arginine deiminase (PAD)54N
PAEPF03283Pectinacetylesterase22N
PAHPF02671Paired amphipathic helix repeat66N
PA-IILPF07472Fucose-binding lectin II (PA-IIL)2626N
PA-ILPF07828PA-IL-like protein43N
PALB2_WD40PF16756Partner and localizer of BRCA2 WD40 domain61N
PALPPF00291Pyridoxal-phosphate dependent enzyme1818N
PAM2PF07145Ataxin-2 C-terminal region101N
PAN_1PF00024PAN domain33N
PAN_2PF08276PAN-like domain01N
PAP_RNA-bindPF04926Poly(A) polymerase predicted RNA binding domain11N
ParAPF10609NUBPL iron-transfer P-loop NTPase11N
Paramyx_P_V_CPF03210Paramyxovirus P/V phosphoprotein C-terminal11N
Paramyxo_ncapPF00973Paramyxovirus nucleocapsid protein153N
PAS_11PF14598PAS domain24N
PAS_3PF08447PAS fold01N
PAT1PF09770Topoisomerase II-associated protein PAT133N
PaxillinPF03535Paxillin family71N
PBP_dimerPF03717Penicillin-binding Protein dimerisation domain33N
PC4PF02229Transcriptional Coactivator p15 (PC4)11N
PCIPF01399PCI domain181N
PCMTPF01135Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)11N
PCNA_CPF02747Proliferating cell nuclear antigen, C-terminal domain3738N
PCNA_NPF00705Proliferating cell nuclear antigen, N-terminal domain3738N
PCRFPF03462PCRF domain271N
PD40PF07676WD40-like Beta Propeller Repeat62N
PDEase_IPF002333'5'-cyclic nucleotide phosphodiesterase33N
PDGFPF00341PDGF/VEGF domain45N
PDZPF00595PDZ domain178168Y
PDZ_2PF13180PDZ domain3030Y
PDZ_3PF17815PDZ domain11N
PDZ_5PF17817PDZ domain11N
PDZ_6PF17820PDZ domain3223N
Pectate_lyase_2PF06917Periplasmic pectate lyase11N
Pectate_lyase22PF14583Oligogalacturonate lyase41N
PemK_toxinPF02452PemK-like, MazF-like toxin of type II toxin-antitoxin system22N
Pep_deformylasePF01327Polypeptide deformylase1211N
Peptidase_A4PF01828Peptidase A4 family33N
Peptidase_A8PF01252Signal peptidase (SPase) II33N
Peptidase_C1PF00112Papain family cysteine protease1717N
Peptidase_C10PF01640Peptidase C10 family11N
Peptidase_C107PF17222Viral cysteine endopeptidase C10711N
Peptidase_C11PF03415Clostripain family33N
Peptidase_C12PF01088Ubiquitin carboxyl-terminal hydrolase, family 111N
Peptidase_C13PF01650Peptidase C13 family77N
Peptidase_C14PF00656Caspase domain161161N
Peptidase_C2PF00648Calpain family cysteine protease44N
Peptidase_C3PF005483C cysteine protease (picornain 3C)88N
Peptidase_C30PF05409Coronavirus endopeptidase C304345N
Peptidase_C37PF05416Southampton virus-type processing peptidase55N
Peptidase_C39PF03412Peptidase C39 family11N
Peptidase_C4PF00863Peptidase family C433N
Peptidase_C5PF00770Adenovirus endoprotease1010N
Peptidase_C50PF03568Peptidase family C5033N
Peptidase_M1PF01433Peptidase family M1 domain1919N
Peptidase_M1_NPF17900Peptidase M1 N-terminal domain1919N
Peptidase_M10PF00413Matrixin2219N
Peptidase_M13PF01431Peptidase family M1311N
Peptidase_M13_NPF05649Peptidase family M1311N
Peptidase_M14PF00246Zinc carboxypeptidase44N
Peptidase_M16PF00675Insulinase (Peptidase family M16)3232N
Peptidase_M16_CPF05193Peptidase M16 inactive domain3242N
Peptidase_M16_MPF16187Middle or third domain of peptidase_M161714N
Peptidase_M17PF00883Cytosol aminopeptidase family, catalytic domain22N
Peptidase_M2PF01401Angiotensin-converting enzyme1111N
Peptidase_M23PF01551Peptidase family M2322N
Peptidase_M24PF00557Metallopeptidase family M242311N
Peptidase_M27PF01742Clostridial neurotoxin zinc protease2017N
Peptidase_M28PF04389Peptidase family M2843N
Peptidase_M3PF01432Peptidase family M333N
Peptidase_M4PF01447Thermolysin metallopeptidase, catalytic domain33N
Peptidase_M4_CPF02868Thermolysin metallopeptidase, alpha-helical domain33N
Peptidase_M41PF01434Peptidase family M4121N
Peptidase_M42PF05343M42 glutamyl aminopeptidase11N
Peptidase_M43PF05572Pregnancy-associated plasma protein-A11N
Peptidase_M48PF01435Peptidase family M4811N
Peptidase_M49PF03571Peptidase family M4977N
Peptidase_M60PF13402Peptidase M60, enhancin and enhancin-like21N
Peptidase_M9PF01752Collagenase33N
Peptidase_S10PF00450Serine carboxypeptidase22N
Peptidase_S11PF00768D-alanyl-D-alanine carboxypeptidase11N
Peptidase_S21PF00716Assemblin (Peptidase family S21)33N
Peptidase_S26PF10502Signal peptidase, peptidase S2666N
Peptidase_S29PF02907Hepatitis C virus NS3 protease5853N
Peptidase_S3PF00944Alphavirus core protein01N
Peptidase_S41PF03572Peptidase family S4177N
Peptidase_S46PF10459Peptidase S4655N
Peptidase_S64PF08192Peptidase family S642020N
Peptidase_S66PF02016LD-carboxypeptidase N-terminal domain11N
Peptidase_S66CPF17676LD-carboxypeptidase C-terminal domain11N
Peptidase_S7PF00949Peptidase S7, Flavivirus NS3 serine protease1416N
Peptidase_S8PF00082Subtilase family7878N
Peptidase_S9PF00326Prolyl oligopeptidase family2833N
Peptidase_S9_NPF02897Prolyl oligopeptidase, N-terminal beta-propeller domain1520N
Peripla_BP_2PF01497Periplasmic binding protein22N
peroxidasePF00141Peroxidase11N
Peroxin-3PF04882Peroxin-311N
PetGPF02529Cytochrome B6-F complex subunit 51314N
PetLPF05115Cytochrome B6-F complex subunit VI (PetL)1312N
PetMPF08041PetM family of cytochrome b6f complex subunit 71314N
Pex14_NPF04695Pex14 N-terminal domain33N
PHPF00169PH domain12N
PH_TFIIHPF08567TFIIH p62 subunit, N-terminal domain56N
Phage_Capsid_P3PF09018P3 major capsid protein11N
Phage_Coat_BPF05356Inovirus Coat protein B02N
Phage_coatGP8PF19199Phage major coat protein, Gp801N
Phage_FPF02305Capsid protein (F protein)22N
Phage_lysozymePF00959Phage lysozyme93N
PHATPF09246PHAT22N
PHDPF00628PHD-finger120110Y
PHD_2PF13831PHD-finger31N
PhdYeFM_antitoxPF02604Antitoxin Phd_YefM, type II toxin-antitoxin system11N
PhospholambanPF04272Phospholamban52N
Phospholip_A2_1PF00068Phospholipase A23030N
PhosphorylasePF00343Carbohydrate phosphorylase11N
Photo_RCPF00124Photosynthetic reaction centre protein5642N
PhycobilisomePF00502Phycobilisome protein22N
PI3_PI4_kinasePF00454Phosphatidylinositol 3- and 4-kinase32N
PI3KaPF00613Phosphoinositide 3-kinase family, accessory domain (PIK domain)11N
Pico_P1APF02226Picornavirus coat protein (VP4)1917N
Pico_P2APF00947Picornavirus core protein 2A11N
PIDPF00640Phosphotyrosine interaction domain (PTB/PID)1717Y
PIEZOPF15917Piezo11N
Piezo_RRas_bdgPF12166Piezo non-specific cation channel, R-Ras-binding domain11N
PIG-LPF02585GlcNAc-PI de-N-acetylase11N
PIH1PF08190PIH1 N-terminal domain33N
Pih1_fungal_CSPF18482Fungal Pih1 CS domain21N
Pilin_NPF07790Archaeal Type IV pilin, N-terminal11N
PilM_2PF11104Type IV pilus assembly protein PilM;11N
PilOPF04350Pilus assembly protein, PilO01N
PilSPF08805PilS N terminal11N
PINPF01850PIN domain22N
PiwiPF02171Piwi domain11N
PK_Tyr_Ser-ThrPF07714Protein tyrosine and serine/threonine kinase3732N
PKcGMP_CCPF16808Coiled-coil N-terminus of cGMP-dependent protein kinase41N
PKHD_CPF18331PKHD-type hydroxylase C-terminal domain11N
PKIPF02827cAMP-dependent protein kinase inhibitor2471N
pKIDPF02173pKID domain21N
PkinasePF00069Protein kinase domain468440N
Pkinase_CPF00433Protein kinase C terminal domain2819N
PLA2_inhPF02988Phospholipase A2 inhibitor14N
Plexin_cytoplPF08337Plexin cytoplasmic RasGAP domain11N
Plk4_PB1PF18190Polo-like Kinase 4 Polo Box 111N
Plk4_PB2PF18409Polo-like Kinase 4 Polo Box 211N
PlugPF07715TonB-dependent Receptor Plug Domain2015N
Plug_transloconPF10559Plug domain of Sec61p118N
Plus-3PF03126Plus-3 domain11N
PmbA_TldD_CPF19289PmbA/TldA metallopeptidase C-terminal domain44N
PmbA_TldD_MPF19290PmbA/TldA metallopeptidase central domain44N
PMC2NTPF08066PMC2NT (NUC016) domain21N
PMTPF02366Dolichyl-phosphate-mannose-protein mannosyltransferase11N
PMT_4TMCPF16192C-terminal four TMM region of protein-O-mannosyltransferase11N
Pneumo_ncapPF03246Pneumovirus nucleocapsid protein22N
Pneumovirus_M2PF06436Pneumovirus matrix protein 2 (M2)11N
PodoplaninPF05808Podoplanin61N
Pol_alpha_B_NPF08418DNA polymerase alpha subunit B N-terminal11N
POLO_boxPF00659POLO box duplicated region4241N
Polyoma_coatPF00718Polyomavirus coat protein11N
Porin_1PF00267Gram-negative porin63N
Porin_3PF01459Eukaryotic porin03N
Porin_4PF13609Gram-negative porin22N
POTRAPF07244Surface antigen variable number repeat21N
POTRA_1PF08478POTRA domain, FtsQ-type11N
PouPF00157Pou domain - N-terminal to homeobox domain01N
Pox_MCELPF03291mRNA capping enzyme01N
PoxvirusPF06227dsDNA Poxvirus11N
PP2CPF00481Protein phosphatase 2C22N
PP2C_2PF13672Protein phosphatase 2C11N
PP-bindingPF00550Phosphopantetheine attachment site142N
PPCPF04151Bacterial pre-peptidase C-terminal domain11N
PPEPF00823PPE family01N
PPO1_DWLPF12142Polyphenol oxidase middle domain32N
PPO1_KFDVPF12143Protein of unknown function (DUF_B2219)31N
PPRPF01535PPR repeat193N
PPR_2PF13041PPR repeat family225N
PPTAPF01239Protein prenyltransferase alpha subunit repeat3029N
PPV_E2_NPF00508E2 (early) protein, N terminal11N
PqqDPF05402Coenzyme PQQ synthesis protein D (PqqD)44N
PRCPF05239PRC-barrel domain14N
PRC2_HTH_1PF18118Polycomb repressive complex 2 tri-helical domain42N
PRCHPF03967Photosynthetic reaction centre, H-chain N-terminal region16N
PrenyltransPF00432Prenyltransferase and squalene oxidase repeat2929N
Pre-PUAPF17832Pre-PUA-like domain22N
PresenilinPF01080Presenilin22N
Pre-SETPF05033Pre-SET motif136N
PriA_3primeBDPF177643'DNA-binding domain (3'BD)11N
PriA_CPF18074Primosomal protein N C-terminal domain11N
PrionPF00377Prion/Doppel alpha-helical domain171N
PRMT5PF05185PRMT5 arginine-N-methyltransferase42N
PRMT5_CPF17286PRMT5 oligomerisation domain1816N
PRMT5_TIMPF17285PRMT5 TIM barrel domain42N
Pro_isomerasePF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD7064N
PRO8NTPF08082PRO8NT (NUC069), PrP8 N-terminal domain31N
PROCNPF08083PROCN (NUC071) domain31N
ProfilinPF00235Profilin1111N
Pro-NT_NNPF07421Neurotensin/neuromedin N precursor251N
Prot_ATP_ID_OBPF16450Proteasomal ATPase OB C-terminal domain55N
Proteasom_Rpn13PF04683Proteasome complex subunit Rpn13 ubiquitin receptor66N
ProteasomePF00227Proteasome subunit6559N
Proteasome_A_NPF10584Proteasome subunit A N-terminal signature654N
Proton_antipo_CPF01010NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus07N
Proton_antipo_MPF00361Proton-conducting membrane transporter712N
PRP38PF03371PRP38 family02N
PRP8_domainIVPF12134PRP8 domain IV core21N
PS_DcarbxylasePF02666Phosphatidylserine decarboxylase05N
PsaA_PsaBPF00223Photosystem I psaA/psaB protein1551N
PsaDPF02531PsaD141N
PsaLPF02605Photosystem I reaction centre subunit XI1439N
PsaNPF05479Photosystem I reaction centre subunit N (PSAN or PSI-N)31N
Psb28PF03912Psb28 protein11N
PsbHPF00737Photosystem II 10 kDa phosphoprotein5337N
PsbJPF01788PsbJ5237N
PsbKPF02533Photosystem II 4 kDa reaction centre component5447N
PsbLPF02419PsbL protein5339N
PsbMPF05151Photosystem II reaction centre M protein (PsbM)5239N
PsbPPF01789PsbP11N
PsbQPF05757Oxygen evolving enhancer protein 3 (PsbQ)64N
PsbWPF07123Photosystem II reaction centre W protein (PsbW)55N
PsbXPF06596Photosystem II reaction centre X protein (PsbX)5323N
PsbYPF06298Photosystem II protein Y (PsbY)2510N
PseudoU_synth_1PF01416tRNA pseudouridine synthase22N
PSIPF01437Plexin repeat41N
PSI_8PF00796Photosystem I reaction centre subunit VIII1430N
PSI_integrinPF17205Integrin plexin domain211N
PSI_PsaEPF02427Photosystem I reaction centre subunit IV / PsaE141N
PSI_PsaFPF02507Photosystem I reaction centre subunit III1538N
PSI_PsaHPF03244Photosystem I reaction centre subunit VI715N
PSIIPF00421Photosystem II protein5648N
PSII_BNRPF14870Photosynthesis system II assembly factor YCF4822N
PSII_Ycf12PF05969Photosystem II complex subunit Ycf125114N
PSMalphaPF17063Phenol-soluble modulin alpha peptide family112N
PTBPF08416Phosphotyrosine-binding domain11N
PTCB-BRCTPF12738twin BRCT domain1413Y
PTPAPF03095Phosphotyrosyl phosphate activator (PTPA) protein22N
PTR2PF00854POT family44N
PUAPF01472PUA domain22N
PUBPF09409PUB domain55N
PUFPF00806Pumilio-family RNA binding repeat12N
PULPF08324PUL domain11N
PUMAPF15826Bcl-2-binding component 3, p53 upregulated modulator of apoptosis141N
PurAPF04845PurA ssDNA and RNA-binding protein01N
PWWPPF00855PWWP domain1111Y
PXPF00787PX domain1111N
Pyr_redox_2PF07992Pyridine nucleotide-disulphide oxidoreductase11N
QRPTase_CPF01729Quinolinate phosphoribosyl transferase, C-terminal domain11N
QRPTase_NPF02749Quinolinate phosphoribosyl transferase, N-terminal domain11N
Qua1PF16274Qua1 domain01N
RAB3GAP2_NPF14655Rab3 GTPase-activating protein regulatory subunit N-terminus21N
Rab5-bindPF09311Rabaptin-like protein01N
Rad1PF02144Repair protein Rad1/Rec1/Rad1711N
Rad10PF03834Binding domain of DNA repair protein Ercc1 (rad10/Swi10)11N
Rad50_zn_hookPF04423Rad50 zinc hook motif11N
Rad51PF08423Rad51119N
Rad60-SLDPF11976Ubiquitin-2 like Rad60 SUMO-like3831N
Radial_spokePF04712Radial spokehead-like protein22N
Radial_spoke_3PF06098Radial spoke protein 311N
Radical_SAMPF04055Radical SAM superfamily54N
RAG2_PHDPF13341RAG2 PHD domain66N
RALFPF05498Rapid ALkalinization Factor (RALF)11N
RAMPPF04901Receptor activity modifying family58N
Ran_BP1PF00638RanBP1 domain321N
Rap1_CPF11626TRF2-interacting telomeric protein/Rap1 - C terminal domain44N
RAP80_UIMPF18282RAP80 N-terminal ubiquitin interaction motif01N
RapH_NPF18801response regulator aspartate phosphatase H, N terminal31N
RasPF00071Ras family5211N
RB_APF01858Retinoblastoma-associated protein A domain93N
RB_BPF01857Retinoblastoma-associated protein B domain77N
Rb_CPF08934Rb C-terminal domain114N
RbcXPF02341RbcX protein22N
RBD-FIPPF09457FIP domain02N
RBM39linkerPF15519linker between RRM2 and RRM3 domains in RBM39 protein33N
RbsnPF11464Rabenosyn Rab binding domain01N
Rcd1PF04078Cell differentiation family, Rcd1-like55N
RdRP_1PF00680Viral RNA-dependent RNA polymerase45N
RdRP_5PF07925Reovirus RNA-dependent RNA polymerase lambda 322N
Recep_L_domainPF01030Receptor L domain169N
RecO_CPF02565Recombination protein O C terminal11N
Rep-A_NPF04057Replication factor-A protein 1, N-terminal domain44N
Repressor_MntPF11423Regulatory protein Mnt01N
ReprolysinPF01421Reprolysin (M12B) family zinc metalloprotease66N
ResIIIPF04851Type III restriction enzyme, res subunit12N
Response_regPF00072Response regulator receiver domain1313N
Retrotrans_gagPF03732Retrotransposon gag protein55N
REV1_CPF16727DNA repair protein REV1 C-terminal domain76N
RF-1PF00472RF-1 domain4612N
RGSPF00615Regulator of G protein signaling domain12N
RHIMPF12721RIP homotypic interaction motif11N
RhodanesePF00581Rhodanese-like domain104N
RhoGAPPF00620RhoGAP domain11N
RhomboidPF01694Rhomboid family2525N
RhvPF00073picornavirus capsid protein339N
RIBIOP_CPF0495040S ribosome biogenesis protein Tsr1 and BMS1 C-terminal21N
Ribonuc_red_lgCPF02867Ribonucleotide reductase, barrel domain2121N
Ribonuc_red_smPF00268Ribonucleotide reductase, small chain11N
Ribonucleas_3_3PF14622Ribonuclease-III-like161N
Ribosom_S12_S23PF00164Ribosomal protein S12/S2359320N
Ribosomal_L1PF00687Ribosomal protein L1p/L10e family1643N
Ribosomal_L10PF00466Ribosomal protein L101881N
Ribosomal_L11PF00298Ribosomal protein L11, RNA binding domain1918N
Ribosomal_L11_NPF03946Ribosomal protein L11, N-terminal domain1916N
Ribosomal_L12PF00542Ribosomal protein L7/L12 C-terminal domain211N
Ribosomal_L12_NPF16320Ribosomal protein L7/L12 dimerisation domain231N
Ribosomal_L14PF00238Ribosomal protein L14p/L23e4803N
Ribosomal_L15ePF00827Ribosomal L151711N
Ribosomal_L16PF00252Ribosomal protein L16p/L10e48165N
Ribosomal_L17PF01196Ribosomal protein L1731110N
Ribosomal_L19ePF01280Ribosomal protein L19e1701N
Ribosomal_L2PF00181Ribosomal Proteins L2, RNA binding domain4792N
Ribosomal_L20PF00453Ribosomal protein L203068N
Ribosomal_L21ePF01157Ribosomal protein L21e1692N
Ribosomal_L21pPF00829Ribosomal prokaryotic L21 protein3091N
Ribosomal_L22PF00237Ribosomal protein L22p/L17e48580N
Ribosomal_L22ePF01776Ribosomal L22e protein family1631N
Ribosomal_L23PF00276Ribosomal protein L23484113N
ribosomal_L24PF17136Ribosomal proteins 50S L24/mitochondrial 39S L2430612N
Ribosomal_L27APF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A4852N
Ribosomal_L27ePF01777Ribosomal L27e protein family1642N
Ribosomal_L28PF00830Ribosomal L28 family2918N
Ribosomal_L29PF00831Ribosomal L29 protein4621N
Ribosomal_L3PF00297Ribosomal protein L34852N
Ribosomal_L30PF00327Ribosomal protein L30p/L7e4832N
Ribosomal_L31ePF01198Ribosomal protein L31e1701N
Ribosomal_L32pPF01783Ribosomal L32p protein family3051N
Ribosomal_L34ePF01199Ribosomal protein L34e1669N
Ribosomal_L35pPF01632Ribosomal protein L35303110N
Ribosomal_L36PF00444Ribosomal protein L362503N
Ribosomal_L36ePF01158Ribosomal protein L36e1651N
Ribosomal_L37ePF01907Ribosomal protein L37e17177N
Ribosomal_L39PF00832Ribosomal L39 protein17315N
Ribosomal_L4PF00573Ribosomal protein L4/L1 family48787N
Ribosomal_L5PF00281Ribosomal protein L54616N
Ribosomal_L5_CPF00673ribosomal L5P family C-terminus4617N
Ribosomal_L6PF00347Ribosomal protein L646213N
Ribosomal_L7AePF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family2055N
Ribosomal_L9_NPF01281Ribosomal protein L9, N-terminal domain2823N
Ribosomal_S10PF00338Ribosomal protein S10p/S20e5958N
Ribosomal_S11PF00411Ribosomal protein S116027N
Ribosomal_S13PF00416Ribosomal protein S13/S18580330N
Ribosomal_S14PF00253Ribosomal protein S14p/S29e5911N
Ribosomal_S17PF00366Ribosomal protein S175993N
Ribosomal_S19PF00203Ribosomal protein S195801N
Ribosomal_S2PF00318Ribosomal protein S25933N
Ribosomal_S26ePF01283Ribosomal protein S26e1761N
Ribosomal_S3_CPF00189Ribosomal protein S3, C-terminal domain5746N
Ribosomal_S30PF04758Ribosomal protein S301772N
Ribosomal_S4PF00163Ribosomal protein S4/S9 N-terminal domain5555N
Ribosomal_S5PF00333Ribosomal protein S5, N-terminal domain6013N
Ribosomal_S8PF00410Ribosomal protein S85873N
Ribosomal_S9PF00380Ribosomal protein S9/S166005N
Ricin_B_lectinPF00652Ricin-type beta-trefoil lectin domain1314N
RicinB_lectin_2PF14200Ricin-type beta-trefoil lectin domain-like83N
RIIaPF02197Regulatory subunit of type II PKA R-subunit57N
RILPPF11461Rab interacting lysosomal protein02N
RIPPF00161Ribosome inactivating protein69N
RNA_pol_A_bacPF01000RNA polymerase Rpb3/RpoA insert domain2213N
RNA_pol_I_TFPF04090RNA polymerase I specific initiation factor11N
RNA_pol_LPF01193RNA polymerase Rpb3/Rpb11 dimerisation domain1311N
RNA_pol_Rpb1_1PF04997RNA polymerase Rpb1, domain 1225N
RNA_pol_Rpb1_2PF00623RNA polymerase Rpb1, domain 2225N
RNA_pol_Rpb1_4PF05000RNA polymerase Rpb1, domain 4237N
RNA_pol_Rpb1_5PF04998RNA polymerase Rpb1, domain 52213N
RNA_pol_Rpb2_1PF04563RNA polymerase beta subunit1813N
RNA_pol_Rpb2_2PF04561RNA polymerase Rpb2, domain 2224N
RNA_pol_Rpb2_3PF04565RNA polymerase Rpb2, domain 3225N
RNA_pol_Rpb2_6PF00562RNA polymerase Rpb2, domain 62227N
RNA_pol_Rpb4PF03874RNA polymerase Rpb461N
RNase_HPF00075RNase H61N
RNase_PHPF011383' exoribonuclease family, domain 122N
RNase_PH_CPF037253' exoribonuclease family, domain 222N
RNase_TPF00929Exonuclease22N
RnaseAPF00074Pancreatic ribonuclease353N
RNPP_CPF18768RNPP family C-terminal domain52N
Rota_NSP3PF01665Rotavirus non-structural protein NSP311N
Rota_NSP4PF01452Rotavirus non structural protein01N
RotamasePF00639PPIC-type PPIASE domain99N
RPA_CPF08784Replication protein A C terminal22N
Rpn3_CPF08375Proteasome regulatory subunit C-terminal51N
RPN6_C_helixPF1850326S proteasome subunit RPN6 C-terminal helix domain51N
RPN7PF1060226S proteasome subunit RPN741N
Rpn9_CPF18261Rpn9 C-terminal helix11N
RraA-likePF03737Aldolase/RraA11N
Rrf2PF02082Iron-dependent Transcriptional regulator11N
RRM_1PF00076RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)3718N
RRM_8PF11835RRM-like domain22N
Rrn6PF10214RNA polymerase I-specific transcription-initiation factor11N
rRNA_proc-archPF13234rRNA-processing arch domain21N
Rrp40_NPF18311Exosome complex exonuclease Rrp40 N-terminal domain02N
Rsc14PF08586RSC complex, Rsc14/Ldb7 subunit22N
RsfSPF02410Ribosomal silencing factor during starvation61N
RTT107_BRCT_5PF16770Regulator of Ty1 transposition protein 107 BRCT domain88Y
RTT107_BRCT_6PF16771Regulator of Ty1 transposition protein 107 BRCT domain11N
RuBisCO_largePF00016Ribulose bisphosphate carboxylase large chain, catalytic domain22N
RuBisCO_smallPF00101Ribulose bisphosphate carboxylase, small chain22N
RubredoxinPF00301Rubredoxin12N
rvePF00665Integrase core domain2021N
RVPPF00077Retroviral aspartyl protease9999N
RVT_1PF00078Reverse transcriptase (RNA-dependent DNA polymerase)141N
RWDPF05773RWD domain04N
RyRPF02026RyR domain11N
S_100PF01023S-100/ICaBP type calcium binding domain2221N
S_locus_glycopPF00954S-locus glycoprotein domain01N
S10_plectinPF03501Plectin/S10 domain1735N
S4PF01479S4 domain5872N
SabA_adhesionPF18304SabA N-terminal extracellular adhesion domain11N
SAC3PF12209Leucine permease transcriptional regulator helical domain21N
SAC3_GANPPF03399SAC3/GANP family11N
SAD_SRAPF02182SAD/SRA domain21N
Sad1_UNCPF07738Sad1 / UNC-like C-terminal29N
Sas10_Utp3PF04000Sas10/Utp3/C1D family31N
SAWADEEPF16719SAWADEE domain44N
SbcCD_CPF13558Putative exonuclease SbcCD, C subunit02N
SBP_bac_1PF01547Bacterial extracellular solute-binding protein1911N
SBP_bac_3PF00497Bacterial extracellular solute-binding proteins, family 322N
SBP_bac_5PF00496Bacterial extracellular solute-binding proteins, family 5 Middle6060N
SBP_bac_8PF13416Bacterial extracellular solute-binding protein115N
SCRLPF06876Plant self-incompatibility response (SCRL) protein01N
Sdh_cytPF01127Succinate dehydrogenase/Fumarate reductase transmembrane subunit01N
SdrG_C_CPF10425C-terminus of bacterial fibrinogen-binding adhesin1010N
Sds3PF08598Sds3-like01N
Sec1PF00995Sec1 family44N
Sec23_BSPF08033Sec23/Sec24 beta-sandwich domain1811N
Sec23_helicalPF04815Sec23/Sec24 helical domain183N
Sec23_trunkPF04811Sec23/Sec24 trunk domain182N
Sec61_betaPF03911Sec61beta family131N
SecA_DEADPF07517SecA DEAD-like domain22N
SecA_PP_bindPF01043SecA preprotein cross-linking domain11N
SecA_SWPF07516SecA Wing and Scaffold domain21N
SecBPF02556Preprotein translocase subunit SecB47N
SecEPF00584SecE/Sec61-gamma subunits of protein translocation complex145N
SecYPF00344SecY1413N
SelRPF01641SelR domain21N
SemaPF01403Sema domain31N
Sema4F_CPF19428Semaphorin 4F C-terminal01N
SepFPF04472Cell division protein SepF22N
SerpinPF00079Serpin (serine protease inhibitor)2915N
Serum_albuminPF00273Serum albumin family41N
SETPF00856SET domain9993N
Sgf11_NPF18519SAGA-associated factor 11 N-terminal domain12N
SH2PF00017SH2 domain142141Y
SH2_2PF14633SH2 domain33N
SH3_1PF00018SH3 domain10493Y
SH3_2PF07653Variant SH3 domain44N
SH3_5PF08460Bacterial SH3 domain11N
SH3_9PF14604Variant SH3 domain3330Y
She2pPF11435RNA binding protein She2p12N
Shigella_OspCPF06128Shigella flexneri OspC protein11N
Sigma70_r1_2PF00140Sigma-70 factor, region 1.2124N
SIKEPF05769SIKE family11N
Sin3_corepressPF08295Sin3 family co-repressor11N
SinaPF03145Seven in absentia protein family77N
SinIPF08671Anti-repressor SinI02N
SIP1PF04938Survival motor neuron (SMN) interacting protein 1 (SIP1)16N
SIR2PF02146Sir2 family108106N
SKICHPF17751SKICH domain02N
Skp1PF01466Skp1 family, dimerisation domain164N
Skp1_POZPF03931Skp1 family, tetramerisation domain281N
SLM4PF16818Protein SLM401N
SLTPF01464Transglycosylase SLT domain64N
SLT_LPF14718Soluble lytic murein transglycosylase L domain32N
SMC_hingePF06470SMC proteins Flexible Hinge Domain11N
SMC_NPF02463RecF/RecN/SMC N terminal domain32N
SMC_ScpBPF04079Segregation and condensation complex subunit ScpB11N
SMNPF06003Survival motor neuron protein (SMN)21N
SNAREPF05739SNARE domain06N
SNasePF00565Staphylococcal nuclease homologue76N
SNF2-rel_domPF00176SNF2-related domain41N
SNF5PF04855SNF5 / SMARCB1 / INI131N
SNX17_FERM_CPF18116Sorting Nexin 17 FERM C-terminal domain12N
Snx8_BAR_domPF19566Sorting nexin 8/Mvp1 BAR domain01N
SOARPF16533STIM1 Orai1-activating region11N
Sod_CuPF00080Copper/zinc superoxide dismutase (SODC)65N
SopDPF11047Salmonella outer protein D11N
SortasePF04203Sortase domain44N
Sortilin_CPF15901Sortilin, neurotensin receptor 3, C-terminal43N
Sortilin-Vps10PF15902Sortilin, neurotensin receptor 3,44N
SpaAPF17802Prealbumin-like fold domain22N
SPASMPF13186Iron-sulfur cluster-binding domain44N
Spc24PF08286Spc24 subunit of Ndc8024N
Spidroin_NPF16763Major ampullate spidroin 1, spider silk protein 1, N-term11N
Spindle_Spc25PF08234Chromosome segregation protein Spc2523N
Spin-SstyPF02513Spin/Ssty Family1010Y
SPOCPF07744SPOC domain44N
SPRYPF00622SPRY domain2117N
SquashPF00299Squash family serine protease inhibitor172N
SRF-TFPF00319SRF-type transcription factor (DNA-binding and dimerisation domain)11N
SRP_SPBPF02978Signal peptide binding domain1815N
SRP19PF01922SRP19 protein71N
SRP54PF00448SRP54-type protein, GTPase domain161N
SSBPF00436Single-strand binding protein family11N
SspBPF04386Stringent starvation protein B44N
Ssu72PF04722Ssu72-like protein88N
ST7PF04184ST7 protein11N
STAGPF08514STAG domain11N
Stap_Strp_tox_CPF02876Staphylococcal/Streptococcal toxin, beta-grasp domain224N
Staph_opine_DHPF10100Staphylopine dehydrogenase11N
Staufen_CPF16482Staufen C-terminal domain11N
StbAPF06406StbA protein11N
STE2PF02116Fungal pheromone mating factor STE2 GPCR21N
STPPase_NPF16891Serine-threonine protein phosphatase N-terminal domain242N
StriatinPF08232Striatin family12N
STT3PF02516Oligosaccharyl transferase STT3 subunit88N
SUFUPF05076Suppressor of fused protein (SUFU)44N
SUFU_CPF12470Suppressor of Fused Gli/Ci N terminal binding domain43N
Sulfotransfer_1PF00685Sulfotransferase domain33N
Sulfotransfer_3PF13469Sulfotransferase family44N
Suppressor_APCPF11414Adenomatous polyposis coli tumour suppressor protein11N
SusD-like_2PF12771Starch-binding associating with outer membrane33N
SusD-like_3PF14322Starch-binding associating with outer membrane65N
SushiPF00084Sushi repeat (SCR repeat)21N
Sushi_2PF09014Beta-2-glycoprotein-1 fifth domain01N
SWIBPF02201SWIB/MDM2 domain5753Y
SWIRMPF04433SWIRM domain254N
SynaphinPF05835Synaphin protein04N
SynaptobrevinPF00957Synaptobrevin101N
SyndecanPF01034Syndecan domain53N
SyntaxinPF00804Syntaxin16N
Syntaxin-6_NPF09177Syntaxin 6, N-terminal37N
T2SS_PulS_OutSPF09691Type II secretion system pilotin lipoprotein (PulS_OutS)11N
T6SS_TssFPF05947Type VI secretion system, TssF11N
T6SS_TssGPF06996Type VI secretion, TssG11N
TACC_CPF05010Transforming acidic coiled-coil-containing protein (TACC), C-terminal02N
TAFPF02969TATA box binding protein associated factor (TAF)156N
TAFHPF07531NHR1 homology to TAF11N
Talin_middlePF09141Talin, middle domain21N
TAP_CPF03943TAP C-terminal domain32N
TatPF00539Transactivating regulatory protein (Tat)133N
TBK1_CCD1PF18394TANK-binding kinase 1 coiled-coil domain 101N
Tcell_CD4_CPF12104T cell CD4 receptor C terminal region71N
Tcp10_CPF07202T-complex protein 10 C-terminus22N
Tctex-1PF03645Tctex-1 family12N
TCTPPF00838Translationally controlled tumour protein11N
TERB2PF15101Telomere-associated protein TERB201N
TetR_C_32PF19344Tetracyclin repressor-like, C-terminal domain44N
TetR_NPF00440Bacterial regulatory proteins, tetR family95N
Tfb2PF03849Transcription factor Tfb213N
TFIIBPF00382Transcription factor TFIIB repeat33N
TFIIF_alphaPF05793Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)42N
TFR_dimerPF04253Transferrin receptor-like dimerisation domain11N
TGF_betaPF00019Transforming growth factor beta like domain11N
ThiFPF00899ThiF family66N
ThioesterasePF00975Thioesterase domain33N
ThioninPF00321Plant thionin22N
ThioredoxinPF00085Thioredoxin119N
Thioredoxin_6PF13848Thioredoxin-like domain11N
THOC7PF05615Tho complex subunit 703N
Thrombin_lightPF09396Thrombin light chain3321N
Thymidylat_syntPF00303Thymidylate synthase22N
TIGPF01833IPT/TIG domain31N
TIG_SUHPF20144TIG domain52N
Tim17PF02466Tim17/Tim22/Tim23/Pmp24 family31N
TINF2_NPF14973TERF1-interacting nuclear factor 2 N-terminus11N
TIP41PF04176TIP41-like family11N
TipASPF07739TipAS antibiotic-recognition domain22N
TIR_2PF13676TIR domain11N
Tli4_CPF18426Tle cognate immunity protein 4 C-terminal domain11N
Tlr3_TMDPF17968Toll-like receptor 3 trans-membrane domain02N
TNFPF00229TNF(Tumour Necrosis Factor) family46N
TNFR_16_TMPF18422Tumor necrosis factor receptor member 16 trans-membrane domain03N
TNFR_c6PF00020TNFR/NGFR cysteine-rich region11N
TolA_bind_triPF16331TolA binding protein trimerisation02N
Tom22PF04281Mitochondrial import receptor subunit Tom2201N
Tom6PF17112Mitochondrial import receptor subunit Tom6, fungal01N
TonB_2PF13103TonB C terminal11N
TonB_dep_RecPF00593TonB dependent receptor2020N
TOP_NPF19310Neurolysin/Thimet oligopeptidase, N-terminal domain31N
TorsinPF06309Torsin11N
Toxin_2PF00451Scorpion short toxin, BmKK241N
Toxin_36PF10550Conantokin toxin151N
Toxin_8PF07365Alpha conotoxin precursor562N
Toxin_R_bind_CPF07951Clostridium neurotoxin, C-terminal receptor binding910N
Toxin_R_bind_NPF07953Clostridium neurotoxin, N-terminal receptor binding92N
Toxin_TOLIPPF00087Snake toxin and toxin-like protein1818N
TP_methylasePF00590Tetrapyrrole (Corrin/Porphyrin) Methylases33N
TPR_1PF00515Tetratricopeptide repeat5338N
TPR_11PF13414TPR repeat5944N
TPR_12PF13424Tetratricopeptide repeat3929N
TPR_16PF13432Tetratricopeptide repeat146N
TPR_19PF14559Tetratricopeptide repeat202N
TPR_2PF07719Tetratricopeptide repeat2527N
TPR_3PF07720Tetratricopeptide repeat44N
TPR_5PF12688Tetratrico peptide repeat01N
TPR_7PF13176Tetratricopeptide repeat01N
Tra_MPF05261TraM protein, DNA-binding11N
TRAF_BIRC3_bdPF16673TNF receptor-associated factor BIRC3 binding domain41N
Trans_reg_CPF00486Transcriptional regulatory protein, C terminal11N
Transcript_VP30PF11507Ebola virus-specific transcription factor VP3033N
TransferrinPF00405Transferrin3617N
Transglut_corePF01841Transglutaminase-like superfamily1111N
Transglut_prokPF09017Microbial transglutaminase11N
TransglyPF00912Transglycosylase71N
Transp_inhibitPF18791Transport inhibitor response 1 protein domain66N
TranspeptidasePF00905Penicillin binding protein transpeptidase domain116N
Transposase_1PF01359Transposase (partial DDE domain)11N
TransthyretinPF00576HIUase/Transthyretin family54N
TrbIPF03743Bacterial conjugation TrbI-like protein02N
TRFPF08558Telomere repeat binding factor (TRF)99N
Tricorn_C1PF14684Tricorn protease C1 domain22N
TrkA_TMDPF18613Tyrosine kinase receptor A trans-membrane domain01N
tRNA_anti-codonPF01336OB-fold nucleic acid binding domain03N
tRNA-synt_2PF00152tRNA synthetases class II (D, K and N)03N
TropomodulinPF03250Tropomodulin01N
TropomyosinPF00261Tropomyosin05N
Tropomyosin_1PF12718Tropomyosin like03N
TroponinPF00992Troponin103N
TruDPF01142tRNA pseudouridine synthase D (TruD)31N
TrypsinPF00089Trypsin602621N
Trypsin_2PF13365Trypsin-like peptidase domain3326N
TSC22PF01166TSC-22/dip/bun family01N
TSP_NTDPF17804Tail specific protease N-terminal domain11N
TTDPF12148Tandem tudor domain within UHRF166N
TTLPF03133Tubulin-tyrosine ligase family54N
TubulinPF00091Tubulin/FtsZ family, GTPase domain64N
Tubulin_CPF03953Tubulin C-terminal domain53N
Tubulin-bindingPF00418Tau and MAP protein, tubulin-binding repeat217N
TUDORPF00567Tudor domain1010N
Tudor_2PF18104Jumonji domain-containing protein 2A Tudor domain1111N
Tudor_4PF18358Histone methyltransferase Tudor domain66N
Tudor_5PF18359Histone methyltransferase Tudor domain 166N
Tudor-knotPF11717RNA binding activity-knot of a chromodomain44N
TugsPF17840Tethering Ubl4a to BAGS domain01N
Tyr-DNA_phosphoPF06087Tyrosyl-DNA phosphodiesterase33N
TyrosinasePF00264Common central domain of tyrosinase43N
U5_2-snRNA_bdgPF10597U5-snRNA binding site 2 of PrP822N
U6-snRNA_bdgPF10596U6-snRNA interacting domain of PrP821N
UB2HPF14814Bifunctional transglycosylase second domain11N
UBAPF00627UBA/TS-N domain01N
UBA_4PF14555UBA-like domain11N
ubiquitinPF00240Ubiquitin family14235N
Ubiquitin_3PF14836Ubiquitin-like domain11N
U-boxPF04564U-box domain31N
UCHPF00443Ubiquitin carboxyl-terminal hydrolase11N
UCR_14kDPF02271Ubiquinol-cytochrome C reductase complex 14kD subunit91N
UCR_Fe-S_NPF10399Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal121N
UCR_TMPF02921Ubiquinol cytochrome reductase transmembrane region92N
UCR_UQCRX_QCR9PF05365Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like92N
UDGPF03167Uracil DNA glycosylase superfamily22N
UEVPF05743UEV domain1010N
Ufm1PF03671Ubiquitin fold modifier 1 protein11N
UL45PF05473UL45 protein, carbohydrate-binding C-type lectin-like11N
UPAR_LY6PF00021u-PAR/Ly-6 domain14N
UQ_conPF00179Ubiquitin-conjugating enzyme126N
Use1PF09753Membrane fusion protein Use124N
USP7_ICP0_bdgPF12436ICP0-binding domain of Ubiquitin-specific protease 758N
UTP25PF06862Utp25, U3 small nucleolar RNA-associated SSU processome protein 2501N
UVRPF02151UvrB/uvrC motif02N
Vac_ImportDegPF09783Vacuolar import and degradation protein88N
VanYPF02557D-alanyl-D-alanine carboxypeptidase11N
VasohibinPF14822Vasohibin67N
VASP_tetraPF08776VASP tetramerisation domain01N
V-ATPase_G_2PF16999Vacuolar (H+)-ATPase G subunit11N
VBSPF08913Vinculin Binding Site31N
VEGFR-2_TMDPF17988VEGFR-2 Transmembrane domain03N
Vfa1PF08432AAA-ATPase Vps4-associated protein 121N
Vg_TduPF07545Vestigial/Tondu family01N
VGCC_beta4Aa_NPF12052Voltage gated calcium channel subunit beta domain 4Aa N terminal71N
VHLPF01847VHL beta domain78N
VHPPF02209Villin headpiece domain45N
VHSPF00790VHS domain1212N
VinculinPF01044Vinculin family2218N
Vps23_corePF09454Vps23 core domain11N
Vps26PF03643Vacuolar protein sorting-associated protein 2655N
VPS28PF03997VPS28 protein11N
Vps39_2PF10367Vacuolar sorting protein 39 domain 201N
Vps4_CPF09336Vps4 C terminal oligomerisation domain91N
Vps51PF08700Vps51/Vps6731N
VRP3PF03536Salmonella virulence-associated 28kDa protein22N
V-setPF07686Immunoglobulin V-set domain884783N
V-set_2PF15910ICOS V-set domain5150N
Vta1PF04652Vta1 like64N
VWAPF00092von Willebrand factor type A domain33N
Waikav_capsid_1PF12264Waikavirus capsid protein 133N
WD40PF00400WD domain, G-beta repeat366151N
WGGPF10273Pre-rRNA-processing protein TSR211N
WH1PF00568WH1 domain1616Y
WH2PF02205WH2 motif51N
WIYLDPF10440Ubiquitin-binding WIYLD domain01N
WRWPF10206Mitochondrial F1F0-ATP synthase, subunit f52N
WWPF00397WW domain6255Y
XFP_CPF09363XFP C-terminal domain01N
XlinkPF00193Extracellular link domain11N
Y_phosphatasePF00102Protein-tyrosine phosphatase3636N
Y_phosphatase2PF03162Tyrosine phosphatase family11N
YBDPF17725YAP binding domain522N
YcaOPF02624YcaO cyclodehydratase, ATP-ad Mg2+-binding11N
Ycf9PF01737YCF95345N
YEATSPF03366YEATS family2423Y
Yippee-Mis18PF03226Yippee zinc-binding/DNA-binding /Mis18, centromere assembly89N
YjeF_NPF03853YjeF-related protein N-terminus2121N
YkuDPF03734L,D-transpeptidase catalytic domain11N
YoeB_toxinPF06769YoeB-like toxin of bacterial type II toxin-antitoxin system51N
YopH_NPF09013YopH, N-terminal11N
z-alphaPF02295Adenosine deaminase z-alpha domain11N
ZapBPF06005Cell division protein ZapB1324N
ZapDPF07072Cell division protein11N
zf-A20PF01754A20-like zinc finger01N
zf-C4_ClpXPF06689ClpX C4-type zinc finger31N
zf-C5HC2PF02928C5HC2 zinc finger62N
zf-CCCHPF00642Zinc finger C-x8-C-x5-C-x3-H type (and similar)11N
zf-CCHCPF00098Zinc knuckle131N
zf-CWPF07496CW-type Zinc Finger1611Y
zf-DBFPF07535DBF zinc finger11N
zf-HC5HC2H_2PF13832PHD-zinc-finger like domain11N
zf-MYNDPF01753MYND finger61N
zf-MYSTPF17772MYST family zinc finger domain21N
zf-RING_5PF14634zinc-RING finger domain01N
zf-Sec23_Sec24PF04810Sec23/Sec24 zinc finger1812N
zf-TAZPF02135TAZ zinc finger73N
zf-UBPPF02148Zn-finger in ubiquitin-hydrolases and other protein11N
zf-UBRPF02207Putative zinc finger in N-recognin (UBR box)1212Y
zf-WRNIP1_ubiPF18279Werner helicase-interacting protein 1 ubiquitin-binding domain11N
ZipA_CPF04354ZipA, C-terminal FtsZ-binding domain11N
Zmiz1_NPF18028Zmiz1 N-terminal tetratricopeptide repeat domain46N
Zn-C2H2_12PF18112Autophagy receptor zinc finger-C2H2 domain01N
ZT_dimerPF16916Dimerisation domain of Zinc Transporter11N
ZZPF00569Zinc finger, ZZ type65N