PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 6NF2

#CDRs = 6; #Clusters = 16.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	15	RASGYNFRDYSIH	PBBLBPAADPPBB
C	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	18	WIKPLWGAVS	BBPAAALPBB
C	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAP
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPDBBLBPBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	20	YDTSRRAS	BLLDPBPP
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BPADB
E	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	28	NVSGTLVRDNYWS	PBBGBPAAABPBB
E	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	39	YVHDSGDTN	BBBPLLPDP
E	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBBPBDBPAAALBBBBPBBPAB
F	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
F	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	19	YNNNDRPS	DBADBBPP
F	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BBBPADPPPBAB
H	heavy	Homo.sapiens	Hu_IGHV4-61*01	82.2	Hu_IGHV4-61*01	53.3	H1	15	H1-15-*	-1	VVSGGTPGRGFLYWS	BBBLABABPGBBBBB
H	heavy	Homo.sapiens	Hu_IGHV4-61*01	82.2	CDRLenMismatch	-1	H2	10	H2-10-*	-1	GTATNTDITD	BBPAABDBBB
H	heavy	Homo.sapiens	Hu_IGHV4-61*01	82.2	Hu_IGHV	-1	H3	17	H3-17-*	-1	TSRAKDYRGPSYSRIDV	BBBBPBDAPABPBBBBB
J	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	28	NVSGTLVRDNYWS	PBBGBPAAABPBB
J	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	39	YVHDSGDTN	BBBPLLPDP
J	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBBPBDBPAAALBBBBPBBPAB
K	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
K	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	19	YNNNDRPS	DBADBBPP
K	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BBBPADPPPBAB
L	kappa	Homo.sapiens	Hu_IGKV2D-40*01	95.7	CDRLenMismatch	-1	L1	16	L1-16-1	11	RSSQSLLDSDGNTCLD	BBABPAPPAALPPPBB
L	kappa	Homo.sapiens	Hu_IGKV2D-40*01	95.7	Hu_IGKV2D-40*01	50	L2	8	L2-8-5	39	YDVSNRVS	BPADPPPP
L	kappa	Homo.sapiens	Hu_IGKV2D-40*01	95.7	Hu_IGKV	-1	L3	9	L3-9-cis7-1	10	MQFVEFPLT	BPDABPpPB
M	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPDBBLBPBB
M	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	20	YDTSRRAS	BLLDPBPP
M	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BPADB
N	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	15	RASGYNFRDYSIH	PBBLBPAADPPBB
N	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	18	WIKPLWGAVS	BBPAAALPBB
N	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAP
O	heavy	Homo.sapiens	Hu_IGHV4-61*01	82.2	Hu_IGHV4-61*01	53.3	H1	15	H1-15-*	-1	VVSGGTPGRGFLYWS	BBBLABABPGBBBBB
O	heavy	Homo.sapiens	Hu_IGHV4-61*01	82.2	CDRLenMismatch	-1	H2	10	H2-10-*	-1	GTATNTDITD	BBPAABDBBB
O	heavy	Homo.sapiens	Hu_IGHV4-61*01	82.2	Hu_IGHV	-1	H3	17	H3-17-*	-1	TSRAKDYRGPSYSRIDV	BBBBPBDAPABPBBBBB
P	kappa	Homo.sapiens	Hu_IGKV2D-40*01	95.7	CDRLenMismatch	-1	L1	16	L1-16-1	11	RSSQSLLDSDGNTCLD	BBABPAPPAALPPPBB
P	kappa	Homo.sapiens	Hu_IGKV2D-40*01	95.7	Hu_IGKV2D-40*01	50	L2	8	L2-8-5	39	YDVSNRVS	BPADPPPP
P	kappa	Homo.sapiens	Hu_IGKV2D-40*01	95.7	Hu_IGKV	-1	L3	9	L3-9-cis7-1	10	MQFVEFPLT	BPDABPpPB
S	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	28	NVSGTLVRDNYWS	PBBGBPAAABPBB
S	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	39	YVHDSGDTN	BBBPLLPDP
S	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBBPBDBPAAALBBBBPBBPAB
T	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
T	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	19	YNNNDRPS	DBADBBPP
T	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BBBPADPPPBAB
U	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPDBBLBPBB
U	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	20	YDTSRRAS	BLLDPBPP
U	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BPADB
V	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	15	RASGYNFRDYSIH	PBBLBPAADPPBB
V	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	18	WIKPLWGAVS	BBPAAALPBB
V	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAP
W	heavy	Homo.sapiens	Hu_IGHV4-61*01	82.2	Hu_IGHV4-61*01	53.3	H1	15	H1-15-*	-1	VVSGGTPGRGFLYWS	BBBLABABPGBBBBB
W	heavy	Homo.sapiens	Hu_IGHV4-61*01	82.2	CDRLenMismatch	-1	H2	10	H2-10-*	-1	GTATNTDITD	BBPAABDBBB
W	heavy	Homo.sapiens	Hu_IGHV4-61*01	82.2	Hu_IGHV	-1	H3	17	H3-17-*	-1	TSRAKDYRGPSYSRIDV	BBBBPBDAPABPBBBBB
X	kappa	Homo.sapiens	Hu_IGKV2D-40*01	95.7	CDRLenMismatch	-1	L1	16	L1-16-1	11	RSSQSLLDSDGNTCLD	BBABPAPPAALPPPBB
X	kappa	Homo.sapiens	Hu_IGKV2D-40*01	95.7	Hu_IGKV2D-40*01	50	L2	8	L2-8-5	39	YDVSNRVS	BPADPPPP
X	kappa	Homo.sapiens	Hu_IGKV2D-40*01	95.7	Hu_IGKV	-1	L3	9	L3-9-cis7-1	10	MQFVEFPLT	BPDABPpPB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019