PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 6N1W

#CDRs = 6; #Clusters = 16.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
3	heavy	Macaca.mulatta	Mf_IGHV4S12*01	86.3	Mf_IGHV4S12*01	53.3	H1	15	H1-15-*	-1	EVSSGSTSRDFFYWS	PBBPPABAAPBBBPB
3	heavy	Macaca.mulatta	Mf_IGHV4S12*01	86.3	Mf_IGHV4S12*01	80	H2	10	H2-10-*	-1	GMYSNSEETN	BBPAABDPBB
3	heavy	Macaca.mulatta	Mf_IGHV4S12*01	86.3	Mf_IGHV	-1	H3	19	H3-19-*	-1	SSRAKIYYSASYSGGRIDV	BPBBBBBABAABDLGBBDP
4	kappa	Macaca.mulatta	Ma_IGKV1-10*01	84.1	Ma_IGKV1-10*01	72.7	L1	11	L1-11-1	25	RASQGIDKDLS	BBABPDADBBB
4	kappa	Macaca.mulatta	Ma_IGKV1-10*01	84.1	Ma_IGKV1-10*01	50	L2	8	L2-8-1	14	YTASTLQT	BLLDBPPP
4	kappa	Macaca.mulatta	Ma_IGKV1-10*01	84.1	Ma_IGKV	-1	L3	9	L3-9-cis7-1	17	QQDFSFPLT	BPDABPpPB
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGPPAAABPBB
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPDP
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBPPBDBPAAALPBBBBBBPAB
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	20	YNNNDRPS	DBADBBPP
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBABPLBPBB
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	17	YDTSRRAS	BLLDBPPP
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADP
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	12	RASGYNFRDYSIH	PBBLBPAAABPBB
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	12	WIKPLWGAVS	BBPAADLPBB
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAP
H	heavy	Macaca.mulatta	Mf_IGHV4S12*01	86.3	Mf_IGHV4S12*01	53.3	H1	15	H1-15-*	-1	EVSSGSTSRDFFYWS	PBBPPABAAPBBBPB
H	heavy	Macaca.mulatta	Mf_IGHV4S12*01	86.3	Mf_IGHV4S12*01	80	H2	10	H2-10-*	-1	GMYSNSEETN	BBPAABDPBB
H	heavy	Macaca.mulatta	Mf_IGHV4S12*01	86.3	Mf_IGHV	-1	H3	19	H3-19-*	-1	SSRAKIYYSASYSGGRIDV	BPBBBBBABAABDLGBBDP
L	kappa	Macaca.mulatta	Ma_IGKV1-10*01	84.1	Ma_IGKV1-10*01	72.7	L1	11	L1-11-1	25	RASQGIDKDLS	BBABPDADBBB
L	kappa	Macaca.mulatta	Ma_IGKV1-10*01	84.1	Ma_IGKV1-10*01	50	L2	8	L2-8-1	14	YTASTLQT	BLLDBPPP
L	kappa	Macaca.mulatta	Ma_IGKV1-10*01	84.1	Ma_IGKV	-1	L3	9	L3-9-cis7-1	17	QQDFSFPLT	BPDABPpPB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	31	NVSGTLVRDNYWS	PBBGPPAAABPBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPDP
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBPPBDBPAAALPBBBBBBPAB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	20	YNNNDRPS	DBADBBPP
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	13	RASGYNFRDYSIH	PBBLBPAAABPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	12	WIKPLWGAVS	BBPAADLPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBABPLBPBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	16	YDTSRRAS	BLLDBPPP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADP
h	heavy	Macaca.mulatta	Mf_IGHV4S12*01	86.3	Mf_IGHV4S12*01	53.3	H1	15	H1-15-*	-1	EVSSGSTSRDFFYWS	PBBPPABAAPBBBPB
h	heavy	Macaca.mulatta	Mf_IGHV4S12*01	86.3	Mf_IGHV4S12*01	80	H2	10	H2-10-*	-1	GMYSNSEETN	BBPAABDPBB
h	heavy	Macaca.mulatta	Mf_IGHV4S12*01	86.3	Mf_IGHV	-1	H3	19	H3-19-*	-1	SSRAKIYYSASYSGGRIDV	BPBBBBBABAABDLGBBDP
l	kappa	Macaca.mulatta	Ma_IGKV1-10*01	84.1	Ma_IGKV1-10*01	72.7	L1	11	L1-11-1	24	RASQGIDKDLS	BBABPDADBBB
l	kappa	Macaca.mulatta	Ma_IGKV1-10*01	84.1	Ma_IGKV1-10*01	50	L2	8	L2-8-1	14	YTASTLQT	BLLDBPPP
l	kappa	Macaca.mulatta	Ma_IGKV1-10*01	84.1	Ma_IGKV	-1	L3	9	L3-9-cis7-1	17	QQDFSFPLT	BPDABPpPB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGPPAAABPBB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPDP
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBPPBDBPAAALPBBBPBBPAB
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	19	YNNNDRPS	DBADBBPP
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	13	RASGYNFRDYSIH	PBBLBPAAABPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	12	WIKPLWGAVS	BBPAADLPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAP
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBABPLBPBB
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	16	YDTSRRAS	BLLDBPPP
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADP

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019