PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 6MPH

#CDRs = 6; #Clusters = 16.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
1	heavy	Macaca.mulatta	Mf_IGHV4S18*01	87.7	Mf_IGHV4S18*01	64.3	H1	14	H1-14-*	-1	AVSGASIRTKAWWS	PBBLBBAPBPBBPB
1	heavy	Macaca.mulatta	Mf_IGHV4S18*01	87.7	Mf_IGHV4S18*01	30	H2	10	H2-10-*	-1	YVSGGWDLPN	BBBAPDPPPB
1	heavy	Macaca.mulatta	Mf_IGHV4S18*01	87.7	Mf_IGHV	-1	H3	10	H3-10-*	-1	AREGPEDFDV	BBPBABPLAP
2	kappa	Macaca.mulatta	Ma_IGKV2S4*01	92	Ma_IGKV2S4*01	93.8	L1	16	L1-16-1	15	RSSQSLVHSDGKTYLS	BPABPAPPAALBBPBB
2	kappa	Macaca.mulatta	Ma_IGKV2S4*01	92	Ma_IGKV2S4*01	75	L2	8	L2-8-1	35	YQVSNWYS	BLAAPBPP
2	kappa	Macaca.mulatta	Ma_IGKV2S4*01	92	Ma_IGKV	-1	L3	9	L3-9-cis7-1	14	GQGVHLPRT	BPDABPpPB
3	heavy	Macaca.mulatta	Mf_IGHV4S18*01	87.7	Mf_IGHV4S18*01	64.3	H1	14	H1-14-*	-1	AVSGASIRTKAWWS	PBBLBBAPBPBBPB
3	heavy	Macaca.mulatta	Mf_IGHV4S18*01	87.7	Mf_IGHV4S18*01	30	H2	10	H2-10-*	-1	YVSGGWDLPN	BBBAPDPPPB
3	heavy	Macaca.mulatta	Mf_IGHV4S18*01	87.7	Mf_IGHV	-1	H3	10	H3-10-*	-1	AREGPEDFDV	BBPBABPLAP
4	kappa	Macaca.mulatta	Ma_IGKV2S4*01	92	Ma_IGKV2S4*01	93.8	L1	16	L1-16-1	15	RSSQSLVHSDGKTYLS	BPABPAPPAALBBPBB
4	kappa	Macaca.mulatta	Ma_IGKV2S4*01	92	Ma_IGKV2S4*01	75	L2	8	L2-8-1	35	YQVSNWYS	BLAAPBPP
4	kappa	Macaca.mulatta	Ma_IGKV2S4*01	92	Ma_IGKV	-1	L3	9	L3-9-cis7-1	14	GQGVHLPRT	BPDABPpPB
H	heavy	Macaca.mulatta	Mf_IGHV4S18*01	87.7	Mf_IGHV4S18*01	64.3	H1	14	H1-14-*	-1	AVSGASIRTKAWWS	PBBLBBAPBPBBPB
H	heavy	Macaca.mulatta	Mf_IGHV4S18*01	87.7	Mf_IGHV4S18*01	30	H2	10	H2-10-*	-1	YVSGGWDLPN	BBBAPDPPPB
H	heavy	Macaca.mulatta	Mf_IGHV4S18*01	87.7	Mf_IGHV	-1	H3	10	H3-10-*	-1	AREGPEDFDV	BBPBABPLAP
L	kappa	Macaca.mulatta	Ma_IGKV2S4*01	92	Ma_IGKV2S4*01	93.8	L1	16	L1-16-1	15	RSSQSLVHSDGKTYLS	BPABPAPPAALBBPBB
L	kappa	Macaca.mulatta	Ma_IGKV2S4*01	92	Ma_IGKV2S4*01	75	L2	8	L2-8-1	35	YQVSNWYS	BLAAPBPP
L	kappa	Macaca.mulatta	Ma_IGKV2S4*01	92	Ma_IGKV	-1	L3	9	L3-9-cis7-1	14	GQGVHLPRT	BPDABPpPB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGPPAAABPBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPDP
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBPPBDBPAAALPBBPPBBPAB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBBB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	24	YNNNDRPS	DPADBBPP
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	16	RASGYNFRDYSIH	PBBLBPAADPPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	12	WIKPLWGAVS	BBPAADLPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPABPLBPBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	19	YDTSRRAS	BLLDBBPP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBLDP
X	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGPPAAABPBB
X	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPDP
X	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBPPBDBPAAALPBBPPBBPAB
Y	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGPPAAABPBB
Y	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	37	YVHDSGDTN	BBBPLLPDP
Y	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBPPBDBPAADLPBBPPBBPAB
Z	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBBB
Z	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	24	YNNNDRPS	DPADBBPP
Z	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
a	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBBB
a	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	24	YNNNDRPS	DPADBBPP
a	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
f	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	16	RASGYNFRDYSIH	PBBLBPAADPPBB
f	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	12	WIKPLWGAVS	BBPAADLPBB
f	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAP
g	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	16	RASGYNFRDYSIH	PBBLBPAADPPBB
g	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	12	WIKPLWGAVS	BBPAADLPBB
g	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAP
h	kappa	Macaca.mulatta	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPABPLBPBB
h	kappa	Macaca.mulatta	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	19	YDTSRRAS	BLLDBBPP
h	kappa	Macaca.mulatta	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBLDP
i	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPABPLBPBB
i	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	19	YDTSRRAS	BLLDBBPP
i	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBLDP

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019