PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 6CUE

#CDRs = 6; #Clusters = 14.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
3	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100	H1	13	H1-13-1	22	KASGYTFTDYEMH	PBBLBPAAABPBB
3	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	80	H2	10	H2-10-1	18	AIVPETGFTA	BBBAADLPBB
3	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV	-1	H3	11	H3-11-*	-1	SRLRLYWYFDV	BBBPPLBBPAB
4	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	19	RSSQSIVYSNGNTYLE	BPABPAPPAALPPBBB
4	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100	L2	8	L2-8-5	25	YKVSNRFS	BBADBPPP
4	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV	-1	L3	9	L3-9-cis7-1	14	FQGSHVPYT	BBDABPpPB
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	31	NVSGTLVRDNYWS	PBBGPPAAABPBB
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLBBP
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBBBBDBPAADLPBBBBBBPAB
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBBB
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	22	YNNNDRPS	DBADBBPP
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPDB
7	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	14	RASGYNFRDYSIH	BBBLBPAADBPBB
7	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	12	WIKPLWGAVS	BBBAADLPBB
7	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPAPAAPPAAPPDB
8	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	PPABPLBBPB
8	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-4	31	YDTSRRAS	BLDDPPPP
8	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADP
H	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100	H1	13	H1-13-1	22	KASGYTFTDYEMH	PPBLBPAAABPBB
H	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	80	H2	10	H2-10-1	19	AIVPETGFTA	BBBAADLPBB
H	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV	-1	H3	11	H3-11-*	-1	SRLRLYWYFDV	BBBPPLBBPAB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	23	RSSQSIVYSNGNTYLE	BPABPDPPADLBPBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100	L2	8	L2-8-5	26	YKVSNRFS	BBADPBPP
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV	-1	L3	9	L3-9-cis7-1	14	FQGSHVPYT	BBDABPpPB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	30	NVSGTLVRDNYWS	PBBGPPAAABPBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	37	YVHDSGDTN	BBBPLLBBP
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBBPBDBBAADLPBBPBBBPAB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBBB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	21	YNNNDRPS	DBADBBPP
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	14	RASGYNFRDYSIH	BBBLBPAADBPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	12	WIKPLWGAVS	BBBAADLPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPAPAAPPAAPPDB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	PBAPBLBBPB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-4	31	YDTSRRAS	BLDDPPPP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADP
h	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100	H1	13	H1-13-1	21	KASGYTFTDYEMH	PPBLBPAAABPBB
h	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	80	H2	10	H2-10-1	17	AIVPETGFTA	BBBAADLPBB
h	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV	-1	H3	11	H3-11-*	-1	SRLRLYWYFDV	BBBPPLBBPAB
l	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	23	RSSQSIVYSNGNTYLE	BPABPAPPADLPPBPB
l	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100	L2	8	L2-8-5	28	YKVSNRFS	BBADBPPP
l	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV	-1	L3	9	L3-9-cis7-1	17	FQGSHVPYT	BBDABPpPB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	31	NVSGTLVRDNYWS	PBBGPPAAABPBB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPBP
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BBBBPBBPBDBPAADLPBBBBBBPAB
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBBB
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	21	YNNNDRPS	DBADBBPP
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPDB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	13	RASGYNFRDYSIH	BBBLBPAADBPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	13	WIKPLWGAVS	BBBAADLPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPAPAAPPAAPPDP
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPABPLBBPB
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-4	30	YDTSRRAS	BLDDPPPP
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADP

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019