PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 6CM3

#CDRs = 6; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
J	kappa	Homo.sapiens	Hu_IGKV3D-15*01	95.7	Hu_IGKV3D-15*01	81.8	L1	11	L1-11-1	31	RASESVSSDLA	BBABPDLDBBB
J	kappa	Homo.sapiens	Hu_IGKV3D-15*01	95.7	Hu_IGKV3D-15*01	100	L2	8	L2-8-1	27	YGASTRAT	BLLDBPPP
J	kappa	Homo.sapiens	Hu_IGKV3D-15*01	95.7	Hu_IGKV	-1	L3	11	L3-11-cis7-1	21	QQYNNWPPRYT	BPDAPBpPBPP
K	heavy	Homo.sapiens	Hu_IGHV1-69*02	84.9	Hu_IGHV1-69*02	53.8	H1	13	H1-13-1	34	KASGDTFIRYSFT	PPPGPPAAABPBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*02	84.9	Hu_IGHV1-69*02	60	H2	10	H2-10-1	24	RIITILDVAH	BBPAAALBBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*02	84.9	Hu_IGHV	-1	H3	21	H3-21-*	-1	AGVYEGEADEGEYDNNGFLKH	BBBPDGPAADDPBALPDPBAP
L	kappa	Homo.sapiens	Hu_IGKV3D-15*01	95.7	Hu_IGKV3D-15*01	81.8	L1	11	L1-11-1	31	RASESVSSDLA	BBABPDLDBBB
L	kappa	Homo.sapiens	Hu_IGKV3D-15*01	95.7	Hu_IGKV3D-15*01	100	L2	8	L2-8-1	27	YGASTRAT	BLLDBPPP
L	kappa	Homo.sapiens	Hu_IGKV3D-15*01	95.7	Hu_IGKV	-1	L3	11	L3-11-cis7-1	21	QQYNNWPPRYT	BPDAPBpPBPP
M	heavy	Homo.sapiens	Hu_IGHV1-69*02	84.9	Hu_IGHV1-69*02	53.8	H1	13	H1-13-1	34	KASGDTFIRYSFT	PPPGPPAAABPBB
M	heavy	Homo.sapiens	Hu_IGHV1-69*02	84.9	Hu_IGHV1-69*02	60	H2	10	H2-10-1	24	RIITILDVAH	BBPAAALBBB
M	heavy	Homo.sapiens	Hu_IGHV1-69*02	84.9	Hu_IGHV	-1	H3	21	H3-21-*	-1	AGVYEGEADEGEYDNNGFLKH	BBBPDGPAADDPBALPDPBAP
N	kappa	Homo.sapiens	Hu_IGKV3D-15*01	95.7	Hu_IGKV3D-15*01	81.8	L1	11	L1-11-1	31	RASESVSSDLA	BBABPDLDBBB
N	kappa	Homo.sapiens	Hu_IGKV3D-15*01	95.7	Hu_IGKV3D-15*01	100	L2	8	L2-8-1	27	YGASTRAT	BLLDBPPP
N	kappa	Homo.sapiens	Hu_IGKV3D-15*01	95.7	Hu_IGKV	-1	L3	11	L3-11-cis7-1	21	QQYNNWPPRYT	BPDAPBpPBPP
O	heavy	Homo.sapiens	Hu_IGHV1-69*02	84.9	Hu_IGHV1-69*02	53.8	H1	13	H1-13-1	34	KASGDTFIRYSFT	PPPGPPAAABPBB
O	heavy	Homo.sapiens	Hu_IGHV1-69*02	84.9	Hu_IGHV1-69*02	60	H2	10	H2-10-1	24	RIITILDVAH	BBPAAALBBB
O	heavy	Homo.sapiens	Hu_IGHV1-69*02	84.9	Hu_IGHV	-1	H3	21	H3-21-*	-1	AGVYEGEADEGEYDNNGFLKH	BBBPDGPAADDPBALPDPBAP
P	heavy	Homo.sapiens	Hu_IGHV1-69*01	58.4	CDRLenMismatch	-1	H1	14	H1-14-*	-1	KAYGVNTFGLYAVN	PBPLPABAAAPBBB
P	heavy	Homo.sapiens	Hu_IGHV1-69*01	58.4	CDRLenMismatch	-1	H2	8	H2-8-*	-1	QIWRWKSS	BDPLLBPB
P	heavy	Homo.sapiens	Hu_IGHV1-69*01	58.4	-	-1	H3	22	H3-22-*	-1	TTTSTYDKWSGLHHDGVMAFSS	BBBPDAPAAALABBLLBBPBAB
Q	kappa	Homo.sapiens	Hu_IGKV1D-39*01	79.7	Mo_IGKV4-92*01	50	L1	12	L1-12-2	27	RASQSITGNWVA	BPABBBPLLPBB
Q	kappa	Homo.sapiens	Hu_IGKV1D-39*01	79.7	Mo_IGKV4-92*01	37.5	L2	8	L2-8-2	11	YRGAALLG	BLGDPPPA
Q	kappa	Homo.sapiens	Hu_IGKV1D-39*01	79.7	Mo_IGKV	-1	L3	9	L3-9-cis7-1	14	QQYDTYPGT	BPDABPpPB
R	heavy	Homo.sapiens	Hu_IGHV1-69*01	58.4	CDRLenMismatch	-1	H1	14	H1-14-*	-1	KAYGVNTFGLYAVN	PBPLPABAAAPBBB
R	heavy	Homo.sapiens	Hu_IGHV1-69*01	58.4	CDRLenMismatch	-1	H2	8	H2-8-*	-1	QIWRWKSS	BDPLLBPB
R	heavy	Homo.sapiens	Hu_IGHV1-69*01	58.4	-	-1	H3	22	H3-22-*	-1	TTTSTYDKWSGLHHDGVMAFSS	BBBPDAPAAALABBLLBBPBAB
S	kappa	Homo.sapiens	Hu_IGKV1D-39*01	79.7	Mo_IGKV4-92*01	50	L1	12	L1-12-2	27	RASQSITGNWVA	BPABBBPLLPBB
S	kappa	Homo.sapiens	Hu_IGKV1D-39*01	79.7	Mo_IGKV4-92*01	37.5	L2	8	L2-8-2	11	YRGAALLG	BLGDPPPA
S	kappa	Homo.sapiens	Hu_IGKV1D-39*01	79.7	Mo_IGKV	-1	L3	9	L3-9-cis7-1	14	QQYDTYPGT	BPDABPpPB
T	heavy	Homo.sapiens	Hu_IGHV1-69*01	58.4	CDRLenMismatch	-1	H1	14	H1-14-*	-1	KAYGVNTFGLYAVN	PBPLPABAAAPBBB
T	heavy	Homo.sapiens	Hu_IGHV1-69*01	58.4	CDRLenMismatch	-1	H2	8	H2-8-*	-1	QIWRWKSS	BDPLLBPB
T	heavy	Homo.sapiens	Hu_IGHV1-69*01	58.4	-	-1	H3	22	H3-22-*	-1	TTTSTYDKWSGLHHDGVMAFSS	BBBPDAPAAALABBLLBBPBAB
U	kappa	Homo.sapiens	Hu_IGKV1D-39*01	79.7	Mo_IGKV4-92*01	50	L1	12	L1-12-2	27	RASQSITGNWVA	BPABBBPLLPBB
U	kappa	Homo.sapiens	Hu_IGKV1D-39*01	79.7	Mo_IGKV4-92*01	37.5	L2	8	L2-8-2	11	YRGAALLG	BLGDPPPA
U	kappa	Homo.sapiens	Hu_IGKV1D-39*01	79.7	Mo_IGKV	-1	L3	9	L3-9-cis7-1	14	QQYDTYPGT	BPDABPpPB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019