PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 6CDI

#CDRs = 6; #Clusters = 14.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
3	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	76.9	H1	13	H1-13-1	25	KASGYAFSDYEIH	PPBLBPDAABPBB
3	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	50	H2	10	H2-10-1	17	AFDPKSGASA	BBPAAALPBB
3	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV	-1	H3	11	H3-11-*	-1	TRLRYFGYFDV	BBBPPLBBPAB
4	kappa	Homo.sapiens	Mo_IGKV1-117*01	97.1	Mo_IGKV1-117*01	75	L1	16	L1-16-1	19	RSSQSVVYSDGDTYLE	BBABPAPBAALPPBBB
4	kappa	Homo.sapiens	Mo_IGKV1-117*01	97.1	Mo_IGKV1-117*01	87.5	L2	8	L2-8-5	17	YKVSRRFS	DBADPPPP
4	kappa	Homo.sapiens	Mo_IGKV1-117*01	97.1	Mo_IGKV	-1	L3	9	L3-9-cis7-1	13	FQGSHVPYT	BBDABPpPB
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGBPAAABPBB
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	37	YVHDSGDTN	BBBPLLPBP
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBPPBDBPAAALPBBBPBBPAB
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	19	YNNNDRPS	DBADBBPP
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBABPLBPBB
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-1	14	YDTSRRAS	BLLDPPPP
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBGAP
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	14	RASGYNFRDYSIH	PBBLBPAAABPBB
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	11	WIKPLWGAVS	BBPAADLPBB
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPAAPPAP
H	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	76.9	H1	13	H1-13-1	25	KASGYAFSDYEIH	PPBLBPDAABPBB
H	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	50	H2	10	H2-10-1	17	AFDPKSGASA	BBPAAALPBB
H	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV	-1	H3	11	H3-11-*	-1	TRLRYFGYFDV	BBBPPLBBPAB
L	kappa	Homo.sapiens	Mo_IGKV1-117*01	97.1	Mo_IGKV1-117*01	75	L1	16	L1-16-1	19	RSSQSVVYSDGDTYLE	BBABPAPBAALPPBBB
L	kappa	Homo.sapiens	Mo_IGKV1-117*01	97.1	Mo_IGKV1-117*01	87.5	L2	8	L2-8-5	17	YKVSRRFS	DBADPPPP
L	kappa	Homo.sapiens	Mo_IGKV1-117*01	97.1	Mo_IGKV	-1	L3	9	L3-9-cis7-1	13	FQGSHVPYT	BBDABPpPB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGBPAAABPBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	37	YVHDSGDTN	BBBPLLPBP
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBPPBDBPAAALPBBBPBBPAB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	19	YNNNDRPS	DBADBBPP
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	14	RASGYNFRDYSIH	PBBLBPAAABPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	11	WIKPLWGAVS	BBPAADLPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPAAPPAP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBABPLBPBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-1	14	YDTSRRAS	BLLDPPPP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBGAP
h	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	76.9	H1	13	H1-13-1	25	KASGYAFSDYEIH	PPBLBPDAABPBB
h	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	50	H2	10	H2-10-1	17	AFDPKSGASA	BBPAAALPBB
h	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV	-1	H3	11	H3-11-*	-1	TRLRYFGYFDV	BBBPPLBBPAB
l	kappa	Homo.sapiens	Mo_IGKV1-117*01	97.1	Mo_IGKV1-117*01	75	L1	16	L1-16-1	19	RSSQSVVYSDGDTYLE	BBABPAPBAALPPBBB
l	kappa	Homo.sapiens	Mo_IGKV1-117*01	97.1	Mo_IGKV1-117*01	87.5	L2	8	L2-8-5	17	YKVSRRFS	DBADPPPP
l	kappa	Homo.sapiens	Mo_IGKV1-117*01	97.1	Mo_IGKV	-1	L3	9	L3-9-cis7-1	13	FQGSHVPYT	BBDABPpPB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGBPAAABPBB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	37	YVHDSGDTN	BBBPLLPBP
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBPPBDBPAAALPBBBPBBPAB
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	19	YNNNDRPS	DBADBBPP
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	14	RASGYNFRDYSIH	PBBLBPAAABPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	11	WIKPLWGAVS	BBPAADLPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPAAPPAP
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBABPLBPBB
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-1	14	YDTSRRAS	BLLDPPPP
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBGAP

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019