PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 6CDE

#CDRs = 6; #Clusters = 15.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
3	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	100	H1	13	H1-13-1	30	KASGYTFTDYEMH	PPBGPPAADBBPB
3	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	80	H2	10	H2-10-1	27	AIVPETGYTA	BBBAAALBBB
3	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV	-1	H3	11	H3-11-*	-1	SRLKLLGYFDV	BBBPPLBPPAB
4	kappa	Homo.sapiens	Mo_IGKV1-117*01	98.5	Mo_IGKV1-117*01	68.8	L1	16	L1-16-1	26	KSSQSIVYKDGNSYLE	BPAPPBBBAALPPPBB
4	kappa	Homo.sapiens	Mo_IGKV1-117*01	98.5	Mo_IGKV1-117*01	87.5	L2	8	L2-8-*	-1	YRVSNRFS	PADDPBPP
4	kappa	Homo.sapiens	Mo_IGKV1-117*01	98.5	Mo_IGKV	-1	L3	9	L3-9-cis7-1	18	FQGTHLPYT	BBDAPBpPP
5	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	17	RASGYNFRDYSIH	PBBLBPAADBPBB
5	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	17	WIKPLWGAVS	BBBAADLPBB
5	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPAPADPPDAPBAP
6	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBDPBLBPBB
6	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-1	13	YDTSRRAS	BLLDBPPP
6	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBGAB
7	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	30	NVSGTLVRDNYWS	PBBLBPAAABBBB
7	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	20	YVHDSGDTN	BBPPLLPBB
7	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBBBBBPDBPAAALDBBPBPBPAB
8	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
8	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	25	YNNNDRPS	DPADPBPP
8	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
H	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	100	H1	13	H1-13-1	30	KASGYTFTDYEMH	PPBGPPAADBBPB
H	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	80	H2	10	H2-10-1	27	AIVPETGYTA	BBBAAALBBB
H	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV	-1	H3	11	H3-11-*	-1	SRLKLLGYFDV	BBBPPLBPPAB
L	kappa	Homo.sapiens	Mo_IGKV1-117*01	98.5	Mo_IGKV1-117*01	68.8	L1	16	L1-16-1	26	KSSQSIVYKDGNSYLE	BPAPPBBBAALPPPBB
L	kappa	Homo.sapiens	Mo_IGKV1-117*01	98.5	Mo_IGKV1-117*01	87.5	L2	8	L2-8-*	-1	YRVSNRFS	PADDPBPP
L	kappa	Homo.sapiens	Mo_IGKV1-117*01	98.5	Mo_IGKV	-1	L3	9	L3-9-cis7-1	18	FQGTHLPYT	BBDAPBpPP
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	30	NVSGTLVRDNYWS	PBBLBPAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	20	YVHDSGDTN	BBBPLLPBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBBBBBPDBPAAALDBBPBPBPAB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	25	YNNNDRPS	DPADPBPP
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	17	RASGYNFRDYSIH	PBBLBPAADBPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	17	WIKPLWGAVS	BBBAADLPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPAPADPPDAPBAP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBDPBLBPBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-1	13	YDTSRRAS	BLLDBPPP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBGAP
h	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	100	H1	13	H1-13-1	30	KASGYTFTDYEMH	PPBGPPAADBBPB
h	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	80	H2	10	H2-10-1	27	AIVPETGYTA	BBBAAALBBB
h	heavy	Homo.sapiens	Mo_IGHV1-15*01	91.8	Mo_IGHV	-1	H3	11	H3-11-*	-1	SRLKLLGYFDV	BBBPPLBPPAB
l	kappa	Homo.sapiens	Mo_IGKV1-117*01	98.5	Mo_IGKV1-117*01	68.8	L1	16	L1-16-1	26	KSSQSIVYKDGNSYLE	BPAPPBBBAALPPPBB
l	kappa	Homo.sapiens	Mo_IGKV1-117*01	98.5	Mo_IGKV1-117*01	87.5	L2	8	L2-8-*	-1	YRVSNRFS	PADDPBPP
l	kappa	Homo.sapiens	Mo_IGKV1-117*01	98.5	Mo_IGKV	-1	L3	9	L3-9-cis7-1	18	FQGTHLPYT	BBDAPBpPP
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	30	NVSGTLVRDNYWS	PBBLBPAAABBBB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	20	YVHDSGDTN	BBBPLLPBB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBBBBBPDBPAAALDBBPBPBPAB
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	25	YNNNDRPS	DPADPBPP
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	17	RASGYNFRDYSIH	PBBLBPAADBPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	17	WIKPLWGAVS	BBBAADLPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPAPADPPDAPBAP
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBDPBLBPBB
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-1	13	YDTSRRAS	BLLDBPPP
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBGDB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019