PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 5WDU

#CDRs = 6; #Clusters = 15.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
B	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-1	17	YNNNDRPS	BLGDBPPP
B	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBBADBPPPAB
C	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	18	NVSGTLVRDNYWS	PBBLBPAAABPBB
C	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	25	YVHDSGDTN	BBBPLLPBB
C	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-cis12-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBBPBDPgDAALPBBPBBBPDB
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	53.8	H1	13	H1-13-1	11	RASGYEFLNCPIN	PPBLBPAAABPBB
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	40	H2	10	H2-10-6	11	WLKPRGGAVN	BBPAPLLPBB
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV	-1	H3	18	H3-18-*	-1	TRGKYCTARDYYNWDFEH	BBPAPBBAABBBAAPPAB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.1	CDRLenMismatch	-1	L1	9	L1-9-*	-1	RTSQSGSLA	BBDDGGPPB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.1	Hu_IGKV3-20*01	50	L2	8	L2-8-1	13	YSGSTRAA	BLLDBPPP
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.1	Hu_IGKV	-1	L3	5	L3-5-*	-1	QQYEF	BBGAP
H	heavy	Homo.sapiens	Hu_IGHV1-8*01	57	Hu_IGHV1-8*01	61.5	H1	13	H1-13-1	14	KTSGYRFNFYHIN	PBBLBPAAABPBP
H	heavy	Homo.sapiens	Hu_IGHV1-8*01	57	Hu_IGHV1-8*01	40	H2	10	H2-10-1	17	WISPYSGDKN	BBPAAALPBB
H	heavy	Homo.sapiens	Hu_IGHV1-8*01	57	Hu_IGHV	-1	H3	16	H3-16-*	-1	AKGLLRDGSSTWLPYL	BPPABABGDBAAPPDP
I	lambda	Homo.sapiens	Hu_IGLV2-23*01	68.7	Hu_IGLV2-23*01	35.7	L1	14	L1-14-cis8-*	-1	TGPNSVCCSHKSIS	BBPAADBdPLBBBB
I	lambda	Homo.sapiens	Hu_IGLV2-23*01	68.7	Hu_IGLV2-23*01	37.5	L2	8	L2-8-1	10	YEDNERAP	BLGDPPPP
I	lambda	Homo.sapiens	Hu_IGLV2-23*01	68.7	Hu_IGLV	-1	L3	10	L3-10-*	-1	CSYTHNSGCV	BPBBADPPBB
K	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
K	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-1	17	YNNNDRPS	BLGDBPPP
K	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBBADBPPPAB
L	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	18	NVSGTLVRDNYWS	PBBLBPAAABPBB
L	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	25	YVHDSGDTN	BBBPLLPBB
L	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBBPBDBDGAALPBBPBBBPDB
M	heavy	Homo.sapiens	Hu_IGHV1-8*01	57	Hu_IGHV1-8*01	61.5	H1	13	H1-13-1	14	KTSGYRFNFYHIN	PBBLBPAAABPBP
M	heavy	Homo.sapiens	Hu_IGHV1-8*01	57	Hu_IGHV1-8*01	40	H2	10	H2-10-1	17	WISPYSGDKN	BBPAAALPBB
M	heavy	Homo.sapiens	Hu_IGHV1-8*01	57	Hu_IGHV	-1	H3	16	H3-16-*	-1	AKGLLRDGSSTWLPYL	BPPABABGDBAAPPDP
N	lambda	Homo.sapiens	Hu_IGLV2-23*01	68.7	Hu_IGLV2-23*01	35.7	L1	14	L1-14-cis8-*	-1	TGPNSVCCSHKSIS	BBPAADBdPLBBBB
N	lambda	Homo.sapiens	Hu_IGLV2-23*01	68.7	Hu_IGLV2-23*01	37.5	L2	8	L2-8-1	10	YEDNERAP	BLGDPPPP
N	lambda	Homo.sapiens	Hu_IGLV2-23*01	68.7	Hu_IGLV	-1	L3	10	L3-10-*	-1	CSYTHNSGCV	BPBBADPPBB
O	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	53.8	H1	13	H1-13-1	11	RASGYEFLNCPIN	PPBLBPAAABPBB
O	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	40	H2	10	H2-10-6	12	WLKPRGGAVN	BBPAPLLPBB
O	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV	-1	H3	18	H3-18-*	-1	TRGKYCTARDYYNWDFEH	BBPAPBBAABBBAAPPAB
P	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.1	CDRLenMismatch	-1	L1	9	L1-9-*	-1	RTSQSGSLA	BBDDGGPPB
P	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.1	Hu_IGKV3-20*01	50	L2	8	L2-8-1	13	YSGSTRAA	BLLDBPPP
P	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.1	Hu_IGKV	-1	L3	5	L3-5-*	-1	QQYEF	BBGAP
S	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
S	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-1	17	YNNNDRPS	BLGDBPPP
S	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBBADBPPPAB
T	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	18	NVSGTLVRDNYWS	PBBLBPAAABPBB
T	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	25	YVHDSGDTN	BBBPLLPBB
T	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBBPBDBDGAALPBBPBBBPDB
U	heavy	Homo.sapiens	Hu_IGHV1-8*01	57	Hu_IGHV1-8*01	61.5	H1	13	H1-13-1	14	KTSGYRFNFYHIN	PBBLBPAAABPBP
U	heavy	Homo.sapiens	Hu_IGHV1-8*01	57	Hu_IGHV1-8*01	40	H2	10	H2-10-1	18	WISPYSGDKN	BBPAAALPBB
U	heavy	Homo.sapiens	Hu_IGHV1-8*01	57	Hu_IGHV	-1	H3	16	H3-16-*	-1	AKGLLRDGSSTWLPYL	BPPABABGDBAAPPDP
V	lambda	Homo.sapiens	Hu_IGLV2-23*01	68.7	Hu_IGLV2-23*01	35.7	L1	14	L1-14-cis8-*	-1	TGPNSVCCSHKSIS	BBPAADBdPLBBBB
V	lambda	Homo.sapiens	Hu_IGLV2-23*01	68.7	Hu_IGLV2-23*01	37.5	L2	8	L2-8-1	10	YEDNERAP	BLGDPPPP
V	lambda	Homo.sapiens	Hu_IGLV2-23*01	68.7	Hu_IGLV	-1	L3	10	L3-10-*	-1	CSYTHNSGCV	BPBBADPPBB
W	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	53.8	H1	13	H1-13-1	11	RASGYEFLNCPIN	PPBLBPAAABPBB
W	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	40	H2	10	H2-10-6	12	WLKPRGGAVN	BBPAPLLPBB
W	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV	-1	H3	18	H3-18-*	-1	TRGKYCTARDYYNWDFEH	BBPAPBBAABBBAAPPAB
X	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.1	CDRLenMismatch	-1	L1	9	L1-9-*	-1	RTSQSGSLA	BBDDGGPPB
X	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.1	Hu_IGKV3-20*01	50	L2	8	L2-8-1	13	YSGSTRAA	BLLDBPPP
X	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.1	Hu_IGKV	-1	L3	5	L3-5-*	-1	QQYEF	BBGAP

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019