PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 5W1K

#CDRs = 6; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV1-5*01	81.8	L1	11	L1-11-*	-1	RASQSIDNWLA	BBABPBABDBB
A	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV1-5*01	75	L2	8	L2-8-1	18	YTASRLES	BLLDPPPP
A	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV	-1	L3	4	L3-4-*	-1	QHRT	BGAP
B	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	84.6	H1	13	H1-13-1	19	AASGFTFSSSAMH	PBBLBPAAAPPBB
B	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	70	H2	10	H2-10-*	-1	VIWSDGSNEN	BBPPLGLPPP
B	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV	-1	H3	19	H3-19-*	-1	ATDKTYVSGYTSTWYYFNY	BBGBGBPBPBDPGBAPBAB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV3-20*01	100	L1	12	L1-12-1	33	RASQSVSSSYLA	PBAPPBPAGAPB
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	22	YGASGRAT	BLLDPPPP
C	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV	-1	L3	9	L3-9-*	-1	QQYGRSGYT	BBPBLLGPP
D	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV4-30-4*01	66.7	H1	15	H1-15-*	-1	SVSGGSIGGSSYYWS	BBAPPPAPDLABPBB
D	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV4-30-4*01	55.6	H2	9	H2-9-1	29	YINYRGITH	BBBADLBBB
D	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV	-1	H3	18	H3-18-*	-1	ARLTSDCSGGNCYQAFDY	BPAGDPBBLGLPLPPPAD
F	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV1-5*01	81.8	L1	11	L1-11-*	-1	RASQSIDNWLA	BBAPPBABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV1-5*01	75	L2	8	L2-8-1	24	YTASRLES	BLGAPPPP
F	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV	-1	L3	4	L3-4-*	-1	QHRT	BGDP
G	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	84.6	H1	13	H1-13-1	18	AASGFTFSSSAMH	PBBLBPAAAPPPB
G	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	70	H2	10	H2-10-*	-1	VIWSDGSNEN	BBPPLGGPAB
G	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV	-1	H3	19	H3-19-*	-1	ATDKTYVSGYTSTWYYFNY	BBGBLPPDLPBBLPAPBAB
H	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV3-20*01	100	L1	12	L1-12-1	30	RASQSVSSSYLA	PBAPPPPAABBB
H	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	22	YGASGRAT	BLLDPPPP
H	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV	-1	L3	9	L3-9-*	-1	QQYGRSGYT	BBPBLGGPP
I	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV4-30-4*01	66.7	H1	15	H1-15-*	-1	SVSGGSIGGSSYYWS	BPDAGPPPPGLBBBB
I	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV4-30-4*01	55.6	H2	9	H2-9-1	26	YINYRGITH	BBBAALBBB
I	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV	-1	H3	18	H3-18-*	-1	ARLTSDCSGGNCYQAFDY	BBAGDPBBLBLAPPBPAB
K	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV1-5*01	81.8	L1	11	L1-11-1	36	RASQSIDNWLA	BBAPPBADBBB
K	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV1-5*01	75	L2	8	L2-8-1	16	YTASRLES	BLLDPPPP
K	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV	-1	L3	4	L3-4-*	-1	QHRT	BDDB
L	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	84.6	H1	13	H1-13-1	17	AASGFTFSSSAMH	PBBLBPAAAPPBB
L	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	70	H2	10	H2-10-*	-1	VIWSDGSNEN	BBPPLGLPPP
L	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV	-1	H3	19	H3-19-*	-1	ATDKTYVSGYTSTWYYFNY	BBBGGDLDLBDPALPBPAB
M	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV3-20*01	100	L1	12	L1-12-*	-1	RASQSVSSSYLA	PBAPPPAGAAPB
M	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	21	YGASGRAT	BLLDPPPP
M	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV	-1	L3	9	L3-9-*	-1	QQYGRSGYT	BBBBLLBPP
N	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV3-20*01	100	L1	12	L1-12-*	-1	RASQSVSSSYLA	PBAPPPAGLAPB
N	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	22	YGASGRAT	BLLDPPPP
N	kappa	Homo.sapiens	Hu_IGKV3-20*01	98.5	Hu_IGKV	-1	L3	9	L3-9-*	-1	QQYGRSGYT	BBPBLLBPP
O	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV4-30-4*01	66.7	H1	15	H1-15-*	-1	SVSGGSIGGSSYYWS	BPBLBPPGBPLBBBB
O	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV4-30-4*01	55.6	H2	9	H2-9-1	27	YINYRGITH	BBPADLBBB
O	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV	-1	H3	18	H3-18-*	-1	ARLTSDCSGGNCYQAFDY	BBAGDBBBGBLAPBBPDB
Q	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV4-30-4*01	66.7	H1	15	H1-15-*	-1	SVSGGSIGGSSYYWS	BBBLBAGBAADPPPB
Q	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV4-30-4*01	55.6	H2	9	H2-9-1	26	YINYRGITH	BBBADLBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	84.7	Hu_IGHV	-1	H3	18	H3-18-*	-1	ARLTSDCSGGNCYQAFDY	BBAGDPBBGBLPLPBPDP
S	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV1-5*01	81.8	L1	11	L1-11-*	-1	RASQSIDNWLA	BBAPPPABDBB
S	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV1-5*01	75	L2	8	L2-8-1	24	YTASRLES	PLLAPPPP
S	kappa	Homo.sapiens	Hu_IGKV1-5*01	100	Hu_IGKV	-1	L3	4	L3-4-*	-1	QHRT	PGAP
T	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	84.6	H1	13	H1-13-1	17	AASGFTFSSSAMH	PBBLBPAAAPPBB
T	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	70	H2	10	H2-10-*	-1	VIWSDGSNEN	BBPPLGGPDB
T	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV	-1	H3	19	H3-19-*	-1	ATDKTYVSGYTSTWYYFNY	BBBBPPAPPBDPGGPBBAB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019