PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 5K8A

#CDRs = 6; #Clusters = 7.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV4-59*01	80	L1	10	L1-10-*	-1	SASSRVGYMH	BPABPALBBB
A	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV4-59*01	100	L2	8	L2-8-1	6	YDTSKLAS	BLGDPPPP
A	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV	-1	L3	9	L3-9-cis7-1	6	FQGSGYPFT	BBDABPpPB
B	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV2-5*08	80	H1	15	H1-15-1	9	TFSGFSLSTAGMSVG	BBBLBBAAPPLPBBB
B	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV2-5*08	55.6	H2	9	H2-9-1	14	DIWWDDKKH	BBBAALPBB
B	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV	-1	H3	12	H3-12-*	-1	ARDMIFNFYFDV	BPBBADALBPAB
E	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV4-59*01	80	L1	10	L1-10-1	7	SASSRVGYMH	BPABPBABBB
E	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV4-59*01	100	L2	8	L2-8-1	8	YDTSKLAS	BLLDBPPP
E	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV	-1	L3	9	L3-9-cis7-1	8	FQGSGYPFT	BBDABPpPB
F	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV2-5*08	80	H1	15	H1-15-1	6	TFSGFSLSTAGMSVG	BBBLBBAAPPLPBBB
F	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV2-5*08	55.6	H2	9	H2-9-1	13	DIWWDDKKH	BBBAALPBB
F	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV	-1	H3	12	H3-12-*	-1	ARDMIFNFYFDV	BPBBAADLBPAB
H	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV2-5*08	80	H1	15	H1-15-1	9	TFSGFSLSTAGMSVG	BBBLBBADPPLPBBB
H	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV2-5*08	55.6	H2	9	H2-9-1	15	DIWWDDKKH	BBBAALPBB
H	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV	-1	H3	12	H3-12-*	-1	ARDMIFNFYFDV	BPBBAADLBPAB
L	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV4-59*01	80	L1	10	L1-10-1	8	SASSRVGYMH	BPABPBABBB
L	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV4-59*01	100	L2	8	L2-8-1	6	YDTSKLAS	BLLDPPPP
L	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV	-1	L3	9	L3-9-cis7-1	7	FQGSGYPFT	BBDABPpPB
M	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV4-59*01	80	L1	10	L1-10-1	8	SASSRVGYMH	BPABPBABBB
M	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV4-59*01	100	L2	8	L2-8-1	7	YDTSKLAS	BLLDPPPP
M	kappa	Mus.musculus	Hu_IGKV1-5*01	100	Mo_IGKV	-1	L3	9	L3-9-cis7-1	7	FQGSGYPFT	BBDABPpPB
V	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV2-5*08	80	H1	15	H1-15-1	6	TFSGFSLSTAGMSVG	BBBLBBAAPPLPBBB
V	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV2-5*08	55.6	H2	9	H2-9-1	17	DIWWDDKKH	BBBAALPBB
V	heavy	Mus.musculus	Hu_IGHV2-5*08	90.4	Hu_IGHV	-1	H3	12	H3-12-*	-1	ARDMIFNFYFDV	BPBBAAALBPAB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019