PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 5D9Q

#CDRs = 6; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	53.8	H1	13	H1-13-1	11	RASGYEFLNCPIN	PPBLBPAAABPBB
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	40	H2	10	H2-10-1	17	WLKPRGGAVN	BBPAAALPBB
D	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV	-1	H3	18	H3-18-*	-1	TRGKYCTARDYYNWDFEH	BBPAPBBAABBBAAPPAB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.8	CDRLenMismatch	-1	L1	9	L1-9-*	-1	RTSQSGSLA	PBDDGGPPB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.8	Hu_IGKV3-20*01	50	L2	8	L2-8-1	13	YSGSTRAA	BLLDBPPP
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.8	Hu_IGKV	-1	L3	5	L3-5-*	-1	QQYEF	BBGAP
E	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
E	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-1	17	YNNNDRPS	BLGDBPPP
E	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADBPPPAB
F	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	19	QVSGTLVRDNYWS	PBBLBPAAABPBB
F	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-1	24	YVHDSGDTN	BBBAALPBB
F	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBBPBDBBAAAGLBBPBBBPDB
H	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	19	QVSGTLVRDNYWS	PBBLBPAAABPBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-1	24	YVHDSGDTN	BBBAALPBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBBPBDBBAAAGLBBPBBBPDB
I	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	53.8	H1	13	H1-13-1	11	RASGYEFLNCPIN	PPBLBPAAABPBB
I	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	40	H2	10	H2-10-1	17	WLKPRGGAVN	BBPAAALPBB
I	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV	-1	H3	18	H3-18-*	-1	TRGKYCTARDYYNWDFEH	BBPAPBBAABBBAAPPAB
I	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.8	CDRLenMismatch	-1	L1	9	L1-9-*	-1	RTSQSGSLA	PBDDGGPPB
I	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.8	Hu_IGKV3-20*01	50	L2	8	L2-8-1	13	YSGSTRAA	BLLDBPPP
I	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.8	Hu_IGKV	-1	L3	5	L3-5-*	-1	QQYEF	BBGAP
L	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
L	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-1	17	YNNNDRPS	BLGDBPPP
L	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADBPPPAB
M	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
M	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-1	17	YNNNDRPS	BLGDBPPP
M	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADBPPPAB
N	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	19	QVSGTLVRDNYWS	PBBLBPAAABPBB
N	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-1	24	YVHDSGDTN	BBBAALPBB
N	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBBPBDBBAAAGLBBPBBBPDB
O	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	53.8	H1	13	H1-13-1	11	RASGYEFLNCPIN	PPBLBPAAABPBB
O	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV1-63*01	40	H2	10	H2-10-1	16	WLKPRGGAVN	BBPAADLPBB
O	heavy	Homo.sapiens	Hu_IGHV1-24*01	65.8	Mo_IGHV	-1	H3	18	H3-18-*	-1	TRGKYCTARDYYNWDFEH	BBPAPBBAABBBAAPPAB
O	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.8	CDRLenMismatch	-1	L1	9	L1-9-*	-1	RTSQSGSLA	PBDDGGPPB
O	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.8	Hu_IGKV3-20*01	50	L2	8	L2-8-1	13	YSGSTRAA	BLLDBPPP
O	kappa	Homo.sapiens	Hu_IGKV3-20*01	76.8	Hu_IGKV	-1	L3	5	L3-5-*	-1	QQYEF	BBGAP

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019