PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 4R4N

#CDRs = 5; #Clusters = 7.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBDBPLBPB
C	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV	-1	H3	13	H3-13-cis7,10,13-*	-1	ARRSNWPYLPFDP	BPPPBDaPPbPBp
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L1	11	L1-11-1	8	RASQGISSYLA	BPABPDGDPBB
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L2	8	L2-8-1	5	YAASTLQS	BLLDPPPP
D	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV	-1	L3	8	L3-8-*	-1	QHLIGLRS	BPABGALP
F	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	H2	9	H2-9-1	28	EIKHNGSPN	BBBAALPPB
F	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV	-1	H3	13	H3-13-cis7,10,13-*	-1	ARRSNWPYLPFDP	BPBPBDaPBbPBp
G	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L1	11	L1-11-1	8	RASQGISSYLA	BPABPDGDPBB
G	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L2	8	L2-8-1	6	YAASTLQS	BLLDPPPP
G	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV	-1	L3	8	L3-8-*	-1	QHLIGLRS	BPABGALP
H	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBDBPLBPB
H	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV	-1	H3	13	H3-13-cis7,13-*	-1	ARRSNWPYLPFDP	BPBPPPaPAPPBp
J	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	H2	9	H2-9-1	24	EIKHNGSPN	BBBAALPPB
J	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV	-1	H3	13	H3-13-cis7,10,13-*	-1	ARRSNWPYLPFDP	BPBPPDaPPbPBp
K	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L1	11	L1-11-1	10	RASQGISSYLA	BPABPDGDPBB
K	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L2	8	L2-8-1	5	YAASTLQS	BLLDPPPP
K	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV	-1	L3	8	L3-8-*	-1	QHLIGLRS	BPABGALP
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L1	11	L1-11-1	8	RASQGISSYLA	BPABPDGDPBB
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L2	8	L2-8-1	6	YAASTLQS	BLLDPPPP
L	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV	-1	L3	8	L3-8-*	-1	QHLIGLRS	BPABGALP
N	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBBAAPPPB
N	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV	-1	H3	13	H3-13-cis7,13-*	-1	ARRSNWPYLPFDP	BPBPPPaPAPBBb
O	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L1	11	L1-11-1	7	RASQGISSYLA	BPABPDGDPBB
O	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L2	8	L2-8-1	6	YAASTLQS	BLLDPPPP
O	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV	-1	L3	8	L3-8-*	-1	QHLIGLRS	BPABGALP
Q	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBDBPLBPB
Q	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV	-1	H3	13	H3-13-cis7,13-*	-1	ARRSNWPYLPFDP	BPBPPPaPDPPBp
R	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L1	11	L1-11-1	8	RASQGISSYLA	BPABPDGDPBB
R	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L2	8	L2-8-1	5	YAASTLQS	BLLDPPPP
R	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV	-1	L3	8	L3-8-*	-1	QHLIGLRS	BPABGALP
T	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	H2	9	H2-9-1	25	EIKHNGSPN	BBBAALPPB
T	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV	-1	H3	13	H3-13-cis7,10,13-*	-1	ARRSNWPYLPFDP	BPBPBDaPBbPBp
U	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L1	11	L1-11-1	8	RASQGISSYLA	BPABPDGDPBB
U	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L2	8	L2-8-1	6	YAASTLQS	BLLDPPPP
U	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV	-1	L3	8	L3-8-*	-1	QHLIGLRS	BPABGALP
W	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	H2	9	H2-9-*	-1	EIKHNGSPN	BBDBPLBPB
W	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV	-1	H3	13	H3-13-cis7,13-*	-1	ARRSNWPYLPFDP	BPBPPPaPAPPBp
X	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L1	11	L1-11-1	8	RASQGISSYLA	BPABPDGDPBB
X	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV1-9*01	100	L2	8	L2-8-1	5	YAASTLQS	BLLDPPPP
X	kappa	Homo.sapiens	Hu_IGKV1-9*01	95.7	Hu_IGKV	-1	L3	8	L3-8-*	-1	QHLIGLRS	BPABGALP

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019