PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 3B2U

#CDRs = 6; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100	H1	15	H1-15-*	-1	TVSGGSISSGDYYWS	PBBLBPAPBAABBBB
C	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	12	YIYYSGSTD	BBBAALPBB
C	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV	-1	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBPADBALBPDB
D	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L1	11	L1-11-1	11	RASQSVSSYLA	BBABPDGDPBB
D	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L2	8	L2-8-1	5	YDASNRAT	BLLDPPPP
D	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV	-1	L3	9	L3-9-cis7-1	9	HQYGSTPLT	BPDABPpPB
F	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100	H1	15	H1-15-*	-1	TVSGGSISSGDYYWS	PPBLGPADBAABBBB
F	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	15	YIYYSGSTD	BBBAALPBB
F	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV	-1	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBPAABALBPDP
G	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L1	11	L1-11-1	11	RASQSVSSYLA	BBABPDGDPBB
G	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L2	8	L2-8-1	10	YDASNRAT	BLLDPPPP
G	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV	-1	L3	9	L3-9-cis7-1	10	HQYGSTPLT	BPDABPpPB
H	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100	H1	15	H1-15-*	-1	TVSGGSISSGDYYWS	PBBLBPAPBAABPPB
H	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	15	YIYYSGSTD	BBBAALPBB
H	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV	-1	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BPBPADPALBPDP
J	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100	H1	15	H1-15-1	38	TVSGGSISSGDYYWS	BBBLBPAABAABPBB
J	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	18	YIYYSGSTD	BBBAALPBB
J	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV	-1	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BPBBAABALBPDB
K	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L1	11	L1-11-1	11	RASQSVSSYLA	BBABPDGDPBB
K	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L2	8	L2-8-1	6	YDASNRAT	BLLDPPPP
K	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV	-1	L3	9	L3-9-cis7-1	5	HQYGSTPLT	BBDABPpPB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L1	11	L1-11-1	7	RASQSVSSYLA	BBABPDGDPBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L2	8	L2-8-cis4-*	-1	YDASNRAT	BLLbPPPP
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV	-1	L3	9	L3-9-cis7-1	8	HQYGSTPLT	BPDABPpPB
N	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100	H1	15	H1-15-1	39	TVSGGSISSGDYYWS	BBBLBPAAPAABPBB
N	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	14	YIYYSGSTD	BBBAALPBB
N	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV	-1	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBPADBALBPDP
O	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L1	11	L1-11-1	8	RASQSVSSYLA	BBABPDGDPBB
O	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L2	8	L2-8-1	9	YDASNRAT	BLLDPPPP
O	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV	-1	L3	9	L3-9-cis7-1	7	HQYGSTPLT	BPDABPpPB
Q	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100	H1	15	H1-15-*	-1	TVSGGSISSGDYYWS	BBBLGPAPBAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	16	YIYYSGSTD	BBBAALPBB
Q	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV	-1	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BPPPAABALBPDP
R	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L1	11	L1-11-1	10	RASQSVSSYLA	BBABPDGDPBB
R	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L2	8	L2-8-1	7	YDASNRAT	BLLDPPPP
R	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV	-1	L3	9	L3-9-cis7-1	8	HQYGSTPLT	BBDABPpPB
T	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100	H1	15	H1-15-*	-1	TVSGGSISSGDYYWS	PBBLGPAPBAABBBB
T	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	15	YIYYSGSTD	BBBAALPBB
T	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV	-1	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBBAABALBPAP
U	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L1	11	L1-11-1	12	RASQSVSSYLA	BBABPDGDPBB
U	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L2	8	L2-8-1	9	YDASNRAT	BLLDBPPP
U	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV	-1	L3	9	L3-9-cis7-1	10	HQYGSTPLT	BPDABPpPB
W	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100	H1	15	H1-15-*	-1	TVSGGSISSGDYYWS	PBBLBPAAPAABPBB
W	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	19	YIYYSGSTD	BBBAALPBB
W	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV	-1	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBBAAPALBPAB
X	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L1	11	L1-11-1	10	RASQSVSSYLA	BBABPDGDPBB
X	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV3-11*01	100	L2	8	L2-8-1	8	YDASNRAT	BLLDPPPP
X	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.5	Hu_IGKV	-1	L3	9	L3-9-cis7-1	11	HQYGSTPLT	BPDABPpPB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019