Clusters of Antibody CDR Loop Conformations
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CDR Structures for
L3-9-cis7-3
Summary info for L3-9-cis7-3
Loop
# of Structures
% of Loop Length
Median PDB
Consensus Sequence
# of Unique Seq
% of Unique Seq
Species
Gene
Loop Conformation
Median Angle
Consensus Sequence Logo
L3-9-cis7-3
30
1.55
1L7IL
qqsysypft
17
2.34
Hu Mo
kappa
BPDABPaLP
20
  
            
Structures in cluster L3-9-cis7-3
Cluster
PDB
Resolution
Gene
PDB Species
Frame Germline
Frame %
CDR Germline
CDR %
Sequence
Ramachandran
Distance(°)
L3-9-cis7-3
1B6DB
2.74
kappa
Homo.sapiens
Hu_IGKV1D-33*01
97.1
Hu_IGKV
-1
QQYDSLPLT
BPDABPaLP
19
L3-9-cis7-3
1L7IL
1.8
kappa
Homo.sapiens
Hu_IGKV1D-39*01
100
Mo_IGKV
-1
QQYYIYPYT
BBDABPaLP
0
L3-9-cis7-3
2AJSL
1.7
kappa
Mus.musculus
Mo_IGKV2-112*01
100
Mo_IGKV
-1
QQFVEYPFT
BPDABPdLP
18
L3-9-cis7-3
2AJUL
1.5
kappa
Mus.musculus
Mo_IGKV2-112*01
100
Mo_IGKV
-1
QQFVEYPFT
BPDABPdLP
19
L3-9-cis7-3
2BX5F
2.7
kappa
Homo.sapiens
Hu_IGKV1D-39*01
100
Hu_IGKV
-1
QQSYSTPNT
BBDABPpLP
26
L3-9-cis7-3
2KH2B
NMR
kappa
Mus.musculus
Hu_IGKV1D-39*01
95.7
Mo_IGKV
-1
QHFWSLPFT
BBDDBPaLB
26
L3-9-cis7-3
3KR3L
2.2
kappa
Homo.sapiens
Hu_IGKV1D-39*01
95.7
Hu_IGKV
-1
QQSYNSPWT
BPDABPaLP
19
L3-9-cis7-3
4FABL
2.7
kappa
Mus.musculus
Mo_IGKV1-110*01
98.5
Mo_IGKV
-1
SQSTHVPWT
BBDDBPaGB
30
L3-9-cis7-3
4JZJB
2.801
kappa
Mus.musculus
Hu_IGKV4-1*01
98.5
Mo_IGKV
-1
QNDYSYPYT
BPDABPaLP
18
L3-9-cis7-3
4K07H
2.83
kappa
Homo.sapiens
Hu_IGKV1D-33*01
100
Hu_IGKV
-1
QQYHNLPYT
BPDABPaLP
19
L3-9-cis7-3
4LEOB
2.64
kappa
Mus.musculus
Hu_IGKV4-1*01
100
Mo_IGKV
-1
QSDYSYPYT
BPDABPdLP
23
L3-9-cis7-3
4LLUB
2.16
kappa
Homo.sapiens
Hu_IGKV1D-39*01
100
Mo_IGKV
-1
QQYYIYPYT
BPDABPaLP
7
L3-9-cis7-3
4LLUD
2.16
kappa
Homo.sapiens
Hu_IGKV1D-39*01
100
Mo_IGKV
-1
QQYYIYPYT
BPDABPaLP
8
L3-9-cis7-3
4LLWB
1.95
kappa
Homo.sapiens
Hu_IGKV1D-39*01
98.5
Mo_IGKV
-1
QQYYIYPYT
BPDABPdLP
17
L3-9-cis7-3
4LLYB
1.6
kappa
Homo.sapiens
Hu_IGKV1D-39*01
98.5
Mo_IGKV
-1
QQYYIYPYT
BBDABPaLP
6
L3-9-cis7-3
4LLYD
1.6
kappa
Homo.sapiens
Hu_IGKV1D-39*01
98.5
Mo_IGKV
-1
QQYYIYPYT
BPDABPaLP
8
L3-9-cis7-3
4MXWL
3.6
kappa
Homo.sapiens
Hu_IGKV1D-39*01
100
Mo_IGKV
-1
QESYSTPWT
BPAABPaLP
18
L3-9-cis7-3
4MXWV
3.6
kappa
Homo.sapiens
Hu_IGKV1D-39*01
100
Mo_IGKV
-1
QESYSTPWT
BPAABPaLP
18
L3-9-cis7-3
4YK4B
2.8
kappa
Homo.sapiens
Hu_IGKV1D-39*01
100
Hu_IGKV
-1
QQSYSIPLT
BPDABPpLB
22
L3-9-cis7-3
4YK4Y
2.8
kappa
Homo.sapiens
Hu_IGKV1D-39*01
100
Hu_IGKV
-1
QQSYSIPLT
BPDABPpLB
22
L3-9-cis7-3
5CP7E
3.01
kappa
Mus.musculus
Mo_IGKV1-135*01
94.2
Mo_IGKV
-1
WQGTHFPQT
BBDABPbLB
24
L3-9-cis7-3
5VSHB
2.55
kappa
Homo.sapiens
Hu_IGKV1D-39*01
97.1
Mo_IGKV
-1
QQYYIYPYT
BPDDBPaLP
11
L3-9-cis7-3
5VSHD
2.55
kappa
Homo.sapiens
Hu_IGKV1D-39*01
97.1
Mo_IGKV
-1
QQYYIYPYT
BBDABPaLP
5
L3-9-cis7-3
5VSHF
2.55
kappa
Homo.sapiens
Hu_IGKV1D-39*01
97.1
Mo_IGKV
-1
QQYYIYPYT
BPDABPaLP
6
L3-9-cis7-3
5VSHL
2.55
kappa
Homo.sapiens
Hu_IGKV1D-39*01
97.1
Mo_IGKV
-1
QQYYIYPYT
BPDABPaLP
9
L3-9-cis7-3
5W9HC
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPAABPaLP
24
L3-9-cis7-3
5W9HF
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BBAABPaLP
23
L3-9-cis7-3
5W9HI
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BBAABPaLP
22
L3-9-cis7-3
5W9ID
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPAABPaLP
22
L3-9-cis7-3
5W9IH
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPAABPaLP
22
L3-9-cis7-3
5W9IL
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPAABPaLP
22
L3-9-cis7-3
5W9JC
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BBAABPaLP
23
L3-9-cis7-3
5W9JF
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BBAABPaLP
23
L3-9-cis7-3
5W9JI
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BBAABPaLP
23
L3-9-cis7-3
5W9KC
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPAABPaLP
23
L3-9-cis7-3
5W9KF
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BBAABPaLP
24
L3-9-cis7-3
5W9KI
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPAABPaLP
23
L3-9-cis7-3
5W9LF
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPAABPaLP
25
L3-9-cis7-3
5W9LI
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BBAABPaLP
22
L3-9-cis7-3
5W9MC
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPAABPaLP
23
L3-9-cis7-3
5W9MI
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BBAABPaLP
22
L3-9-cis7-3
5W9NC
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPAABPaLP
23
L3-9-cis7-3
5W9NF
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BBAABPaLP
23
L3-9-cis7-3
5W9OC
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPAABPaLP
23
L3-9-cis7-3
5W9OF
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BBAABPaLP
23
L3-9-cis7-3
5W9OI
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BBAABPaLP
22
L3-9-cis7-3
5W9PE
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPDABPdLP
21
L3-9-cis7-3
5W9PG
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPDABPdLP
21
L3-9-cis7-3
5W9PL
EM
kappa
Mus.musculus
Mo_IGKV3-2*01
97.1
Mo_IGKV
-1
QQSKEVPRT
BPDABPdLP
21
L3-9-cis7-3
6BPEF
3.34
kappa
Mus.musculus
Mo_IGKV6-15*01
95.7
Mo_IGKV
-1
QQYDSYPYP
BBDABPaLP
18
L3-9-cis7-3
6DW2A
1.7
kappa
Homo.sapiens
Hu_IGKV1-5*01
91.3
Hu_IGKV
-1
QQYKSYSFN
BPDABPdLP
21
L3-9-cis7-3
6N4BS
EM
kappa
Mus.musculus
Mo_IGKV2-137*01
92.9
Mo_IGKV
-1
MQHLEYPLT
BPDABPbLP
18