PyIgClassify: An antibody CDRs clusters web site

FCCC

Clusters of Antibody CDR Loop Conformations

Dunbrack Lab

CDR Structures for L3-13-1

Summary info for L3-13-1
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
L3-13-1	5	17.24	2OTUG	GVGDTIKEQFVYV	2	14.29	Hu Mo	lambda	BBBBBBGAPPBBB	23

Structures in cluster L3-13-1
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
L3-13-1	2OTUA	1.68	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV	-1	GVGDTIKEQFVYV	BBBBPPAABPBBB	5
L3-13-1	2OTUC	1.68	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV	-1	GVGDTIKEQFVYV	BBBBPPAABPBBB	4
L3-13-1	2OTUE	1.68	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV	-1	GVGDTIKEQFVYV	BBBBPPAABPBBB	4
L3-13-1	2OTUG	1.68	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV	-1	GVGDTIKEQFVYV	BBBBPPAABPBBB	0
L3-13-1	2OTWA	2.35	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV	-1	GVGDTIKEQFVYV	BBBBPPAABPBBB	5
L3-13-1	2OTWC	2.35	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV	-1	GVGDTIKEQFVYV	BBBBPPAABPBBB	10
L3-13-1	3FFDB	2	lambda	Mus.musculus	Mo_IGLV3*01	98.5	Mo_IGLV	-1	GVGDTIKEQFVYV	BBBBBBGDBBBBB	37
L3-13-1	5KG9B	2.3	lambda	Mus.musculus.Homo.sapiens	Mo_IGLV3*01	98.5	Mo_IGLV	-1	GVGDTIKEQFVYV	BBBBDPGDPPBBB	36
L3-13-1	5KG9L	2.3	lambda	Mus.musculus.Homo.sapiens	Mo_IGLV3*01	98.5	Mo_IGLV	-1	GVGDTIKEQFVYV	BBBBBBGAPPBBB	39
L3-13-1	6J6YC	2.15	lambda	Synthetic.construct	Hu_IGLV1-47*01	100	Hu_IGLV	-1	AAWDDSLSGPHVV	BBPBPPAAGPBPB	29
L3-13-1	6J6YF	2.15	lambda	Synthetic.construct	Hu_IGLV1-47*01	100	Hu_IGLV	-1	AAWDDSLSGPHVV	BBPBPPAAGPBPB	31

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019

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