PyIgClassify: An antibody CDRs clusters web site

FCCC

Clusters of Antibody CDR Loop Conformations

Dunbrack Lab

CDR Structures for L2-12-1

Summary info for L2-12-1
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
L2-12-1	6	23.08	3BJ91	rYfSdsdkhQGs	5	38.46	Hu Ma	lambda	BBDBAABBBPPP	17

Structures in cluster L2-12-1
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
L2-12-1	3BJ91	2	lambda	Homo.sapiens	Hu_IGLV5-37*01	66.2	Hu_IGLV5-37*01	58.3	RYFSQSDKSQGP	BBDBADBBBPPP	0
L2-12-1	4KTDL	2	lambda	Macaca.mulatta	Ma_IGLV5S3*01	94.2	Ma_IGLV5S3*01	58.3	YYFSDSSQHQGS	BBDBAABBBPPP	9
L2-12-1	4KTEL	1.8	lambda	Macaca.mulatta	Ma_IGLV5S3*01	94.1	Ma_IGLV5S3*01	58.3	YYYSDSSKYQGS	BBDBAABBBPPP	11
L2-12-1	6ID4D	2.4	lambda	Homo.sapiens	Hu_IGLV5-45*01	94.4	Hu_IGLV5-45*01	83.3	RYKSDPDKHQGS	BBDBAABBBBPA	32
L2-12-1	6ID4L	2.4	lambda	Homo.sapiens	Hu_IGLV5-45*01	94.4	Hu_IGLV5-45*01	83.3	RYKSDPDKHQGS	BBDBAABBBBPA	27
L2-12-1	6IEAL	2	lambda	Homo.sapiens	Hu_IGLV5-37*01	100	Hu_IGLV5-37*01	100	YYYSDSDKGQGS	BBDBADBBBPPP	11
L2-12-1	6IEKC	2.7	lambda	Homo.sapiens	Hu_IGLV5-37*01	97.1	Hu_IGLV5-37*01	100	YYYSDSDKGQGS	BBDBADBBBBPP	12
L2-12-1	6IEKF	2.7	lambda	Homo.sapiens	Hu_IGLV5-37*01	97.1	Hu_IGLV5-37*01	100	YYYSDSDKGQGS	BBDBADBBBBPP	13

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019

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