PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for L1-12-3

Summary info for L1-12-3
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
L1-12-3	20	7.46	2OTUE	TLssghSnYtia	8	7.34	Hu Mo	lambda	BPPAADAAPPBB	24

Structures in cluster L1-12-3
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
L1-12-3	2GSGA	2.1	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV3*01	100	TLSSQHSTYTIE	BPPAADAAPPBB	7
L1-12-3	2GSGC	2.1	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV3*01	100	TLSSQHSTYTIE	BPPAADAAPPBB	9
L1-12-3	2OTUA	1.68	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV3*01	100	TLSSQHSTYTIE	BPPAADADPPBB	3
L1-12-3	2OTUC	1.68	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV3*01	100	TLSSQHSTYTIE	BPPAADADPPBB	3
L1-12-3	2OTUE	1.68	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV3*01	100	TLSSQHSTYTIE	BPPAADAAPPBB	0
L1-12-3	2OTUG	1.68	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV3*01	100	TLSSQHSTYTIE	BPPAADAAPPBB	3
L1-12-3	2OTWA	2.35	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV3*01	100	TLSSQHSTYTIE	BPPAADAAPPBB	5
L1-12-3	2OTWC	2.35	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV3*01	100	TLSSQHSTYTIE	PPPAADADPBBB	5
L1-12-3	2QHRL	2	lambda	Mus.musculus	Mo_IGLV3*01	98.5	Mo_IGLV3*01	91.7	TLSRQHSTYTIE	BPPAADAAPPBB	7
L1-12-3	3FFDB	2	lambda	Mus.musculus	Mo_IGLV3*01	98.5	Mo_IGLV3*01	100	TLSSQHSTYTIE	BPPAADAAPPBB	4
L1-12-3	3S96B	1.9	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV3*01	91.7	TLNSQHSTYTIE	BPPAADADPPBB	8
L1-12-3	3S96D	1.9	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV3*01	91.7	TLNSQHSTYTIE	BPPAADADPPBB	10
L1-12-3	4DCQA	1.94	lambda	Mus.musculus	Mo_IGLV3*01	98.5	Mo_IGLV3*01	91.7	TLNSQHSTYTIE	BPPAADADPPBB	8
L1-12-3	4ISVA	1.497	lambda	Mus.musculus	Mo_IGLV3*01	97.1	Mo_IGLV3*01	91.7	TLSRQHSTYTIE	BPPAADAAPPBB	6
L1-12-3	4JJ5A	2.445	lambda	Mus.musculus	Mo_IGLV3*01	97.1	Mo_IGLV3*01	91.7	TLSRQHSTYTIE	BPPAADAAPPBB	9
L1-12-3	5EORL	2.27	lambda	Mus.musculus	Mo_IGLV3*01	100	Mo_IGLV3*01	91.7	TLSSQHSTYTID	BPPAADAAPPBB	6
L1-12-3	5IFJB	2.35	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSSYVIA	BPPPLDADPPBB	33
L1-12-3	5IFJE	2.35	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSSYVIA	BPPPLDADPPBB	33
L1-12-3	5IFJH	2.35	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSSYVIA	BPPPLDADPPBB	33
L1-12-3	5IFJK	2.35	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSSYVIA	BPPPLDADPPBB	33
L1-12-3	5IG7B	1.97	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSSYVIA	BPPPLDAAPPBB	34
L1-12-3	5IG7E	1.97	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSSYVIA	BPPPLDAAPPBB	34
L1-12-3	5IG7H	1.97	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSSYVIA	BPPPLDAAPPBB	33
L1-12-3	5IG7K	1.97	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSSYVIA	BPPPLDAAPPBB	33
L1-12-3	5IHZD	1.64	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSSYVIA	BPPPLDAAPPBB	34
L1-12-3	5IHZF	1.64	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSSYVIA	BPPPLDADPPBB	35
L1-12-3	5IHZL	1.64	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSSYVIA	BPPPLDADPPBB	35
L1-12-3	5KG9B	2.3	lambda	Mus.musculus.Homo.sapiens	Mo_IGLV3*01	98.5	Mo_IGLV3*01	100	TLSSQHSTYTIE	PPPAADADPPBB	14
L1-12-3	5KG9L	2.3	lambda	Mus.musculus.Homo.sapiens	Mo_IGLV3*01	98.5	Mo_IGLV3*01	100	TLSSQHSTYTIE	BPPAADAAPPBB	14
L1-12-3	6A4KL	3.15	lambda	Homo.sapiens	Hu_IGLV4-69*01	84	Hu_IGLV4-69*01	91.7	TLSSGHSTYAIA	BPPPLDAAPBBB	36
L1-12-3	6A4KM	3.15	lambda	Homo.sapiens	Hu_IGLV4-69*01	84	Hu_IGLV4-69*01	91.7	TLSSGHSTYAIA	BPPPLDAAPPBB	36
L1-12-3	6A4KN	3.15	lambda	Homo.sapiens	Hu_IGLV4-69*01	84	Hu_IGLV4-69*01	91.7	TLSSGHSTYAIA	BPPPLDAAPBBB	36
L1-12-3	6A4KO	3.15	lambda	Homo.sapiens	Hu_IGLV4-69*01	84	Hu_IGLV4-69*01	91.7	TLSSGHSTYAIA	BPPPLDAAPPBB	36
L1-12-3	6BE2L	1.7	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSNYAIA	BPPAADADPPBB	10
L1-12-3	6BE3L	1.6	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSNYAIA	BPPAADADPPBB	10
L1-12-3	6BE4L	1.9	lambda	Homo.sapiens	Hu_IGLV4-69*01	97.1	Hu_IGLV4-69*01	91.7	TLSSGHSNYAIA	BPPAADAAPPBB	11
L1-12-3	6F7TA	2.6	lambda	Mus.musculus	Mo_IGLV3*01	94.5	Mo_IGLV3*01	91.7	TLSRQHSTYTIE	BPPAPLAAPPBB	34
L1-12-3	6F7TL	2.6	lambda	Mus.musculus	Mo_IGLV3*01	94.5	Mo_IGLV3*01	91.7	TLSRQHSTYTIE	BPPAPLAAPPBB	34
L1-12-3	6PCUB	2.4	lambda	Homo.sapiens	Hu_IGLV9-49*01	95.5	Hu_IGLV9-49*01	100	TLSSGYSNYKVD	BPPPLDAAPPBP	35
L1-12-3	6PCUE	2.4	lambda	Homo.sapiens	Hu_IGLV9-49*01	95.5	Hu_IGLV9-49*01	100	TLSSGYSNYKVD	BPPPLDAAPPBB	35
L1-12-3	6PCUH	2.4	lambda	Homo.sapiens	Hu_IGLV9-49*01	95.5	Hu_IGLV9-49*01	100	TLSSGYSNYKVD	BPPPLDAAPPBB	35

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019