PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for H3-9-1

Summary info for H3-9-1
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H3-9-1	27	16.07	1AXTH	arydydgay	17	14.66	Ha Hu Mo	heavy	BBBBADBBB	28

Structures in cluster H3-9-1
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H3-9-1	1AXTH	2.15	heavy	Mus.musculus	Mo_IGHV6-3*01	93.2	Mo_IGHV	-1	KIYFYSFSY	BBBBADBBB	0
H3-9-1	1BQLH	2.6	heavy	Mus.musculus	Mo_IGHV1-55*01	84.9	Mo_IGHV	-1	LHGNYDFDG	BBBBADBDP	39
H3-9-1	1JGLH	2.15	heavy	Mus.musculus	Mo_IGHV9S7*01	94.5	Mo_IGHV	-1	ATWGGNSAY	BBBBGDBBB	36
H3-9-1	1JHKH	2.51	heavy	Mus.musculus	Mo_IGHV9S7*01	94.5	Mo_IGHV	-1	ATWGGNSAY	BBBBGDBBB	36
H3-9-1	1T66D	2.3	heavy	Mus.musculus	Mo_IGHV6-7*02	100	Mo_IGHV	-1	TSYGYHGAY	BBBBAABBB	24
H3-9-1	1T66H	2.3	heavy	Mus.musculus	Mo_IGHV6-7*02	100	Mo_IGHV	-1	TSYGYHGAY	BBBBADBBB	17
H3-9-1	1YQVH	1.7	heavy	Mus.musculus	Mo_IGHV1-55*01	83.6	Mo_IGHV	-1	LHGNYDFDG	BBBBAABDP	35
H3-9-1	2C1OB	2.75	heavy	Mus.musculus	Mo_IGHV1S82*01	87.7	Mo_IGHV	-1	ARDDYDGAF	BBBBAAGBB	31
H3-9-1	2C1OH	2.75	heavy	Mus.musculus	Mo_IGHV1S82*01	87.7	Mo_IGHV	-1	ARDDYDGAF	BBBBAAGBB	32
H3-9-1	2C1PB	2	heavy	Mus.musculus	Mo_IGHV1S82*01	88.9	Mo_IGHV	-1	ARDDYDGAF	BBBBAABBB	23
H3-9-1	2C1PH	2	heavy	Mus.musculus	Mo_IGHV1S82*01	88.9	Mo_IGHV	-1	ARDDYDGAF	BBBBAAGBB	28
H3-9-1	2E27H	1.7	heavy	Mus.musculus	Mo_IGHV1-87*01	87.7	Mo_IGHV	-1	ARSDYGGDY	BBBBAABBB	21
H3-9-1	2IFFH	2.65	heavy	Mus.musculus	Mo_IGHV1-55*01	84.7	Mo_IGHV	-1	LHGNYDFDG	BBBBAABDP	36
H3-9-1	2W9DH	1.57	heavy	Mus.musculus	Mo_IGHV1-34*02	94.5	Mo_IGHV	-1	ALYYYDVSY	BPBBGABBB	38
H3-9-1	2Z91A	2.6	heavy	Mus.musculus	Mo_IGHV3-1*02	95.8	Mo_IGHV	-1	ACDDFYSDY	BBBBABGBB	25
H3-9-1	2Z93C	2.4	heavy	Mus.musculus	Mo_IGHV3-1*02	95.8	Mo_IGHV	-1	ACDDFYSDY	BBBDGABBB	39
H3-9-1	3FO9B	1.9	heavy	Mus.musculus	Mo_IGHV6-3*01	93.2	Mo_IGHV	-1	KIYFYSFSY	BBBBADBBB	7
H3-9-1	3FO9H	1.9	heavy	Mus.musculus	Mo_IGHV6-3*01	93.2	Mo_IGHV	-1	KIYFYSFSY	BBBBADBBB	8
H3-9-1	3R06B	2.5	heavy	Cricetulus.migratorius	Ha_IGHV5*01	100	Ha_IGHV	-1	ARFDWDKNY	BBBPADBBB	24
H3-9-1	3R06D	2.5	heavy	Cricetulus.migratorius	Ha_IGHV5*01	100	Ha_IGHV	-1	ARFDWDKNY	BBBBADBBB	21
H3-9-1	3R06F	2.5	heavy	Cricetulus.migratorius	Ha_IGHV5*01	100	Ha_IGHV	-1	ARFDWDKNY	BBBPADBBB	24
H3-9-1	3R06H	2.5	heavy	Cricetulus.migratorius	Ha_IGHV5*01	100	Ha_IGHV	-1	ARFDWDKNY	BBBPADBBB	25
H3-9-1	3R08H	4.1	heavy	Cricetulus.migratorius	Ha_IGHV5*01	100	Ha_IGHV	-1	ARFDWDKNY	BBBPADBBB	31
H3-9-1	4FABH	2.7	heavy	Mus.musculus	Mo_IGHV6-7*02	98.6	Mo_IGHV	-1	TGSYYGMDY	BPBBGDPBB	39
H3-9-1	4OCXH	2.39	heavy	Mus.musculus	Mo_IGHV3-1*02	94.5	Mo_IGHV	-1	SSYGNYGAY	BBBBAAGBB	27
H3-9-1	4OCYH	2.79	heavy	Mus.musculus	Mo_IGHV3-1*02	94.5	Mo_IGHV	-1	SSYGNYGAY	BBBBAAGBB	30
H3-9-1	4WCYH	2	heavy	Mus.musculus	Mo_IGHV14-3*02	98.6	Mo_IGHV	-1	AEITTDFDV	BBBBADBBB	24
H3-9-1	5H2BA	2.001	heavy	Mus.musculus	Mo_IGHV1S122*01	93.2	Mo_IGHV	-1	SIWDSYFDY	BBBBADBBB	35
H3-9-1	5VKKA	2.014	heavy	Homo.sapiens	Hu_IGHV1-69*01	86.3	Mo_IGHV	-1	ARRDITTFY	BBBBADBBB	24
H3-9-1	5VKKH	2.014	heavy	Homo.sapiens	Hu_IGHV1-69*01	86.3	Mo_IGHV	-1	ARRDITTFY	BBBBAABBB	25
H3-9-1	5VL3A	3.1	heavy	Homo.sapiens	Hu_IGHV1-69*01	86.3	Mo_IGHV	-1	ARRDITTFY	BBBBADBBB	24
H3-9-1	5VL3C	3.1	heavy	Homo.sapiens	Hu_IGHV1-69*01	86.3	Mo_IGHV	-1	ARRDITTFY	BBBBADBBB	23
H3-9-1	5VL3E	3.1	heavy	Homo.sapiens	Hu_IGHV1-69*01	86.3	Mo_IGHV	-1	ARRDITTFY	BBBBADBBB	23
H3-9-1	5VL3H	3.1	heavy	Homo.sapiens	Hu_IGHV1-69*01	86.3	Mo_IGHV	-1	ARRDITTFY	BBBPADBBB	24
H3-9-1	5X5XH	1.9	heavy	Mus.musculus	Mo_IGHV1-69*01	87.7	Mo_IGHV	-1	TSSTSVGGS	BBBBADGBB	26
H3-9-1	6ANAH	1.7	heavy	Mus.musculus	Mo_IGHV1S26*01	93.2	Mo_IGHV	-1	ARRDITTFY	BBBBADBBB	21
H3-9-1	6EWBE	2.78	heavy	Mus.musculus	Mo_IGHV1-63*02	91.8	Mo_IGHV	-1	ARIGRSNDY	BPPBADBBB	32
H3-9-1	6EWBG	2.78	heavy	Mus.musculus	Mo_IGHV1-63*02	91.8	Mo_IGHV	-1	ARIGRSNDY	BPPBADBBB	32
H3-9-1	6EWBH	2.78	heavy	Mus.musculus	Mo_IGHV1-63*02	91.8	Mo_IGHV	-1	ARIGRSNDY	BPPBADBBB	32
H3-9-1	6EWBJ	2.78	heavy	Mus.musculus	Mo_IGHV1-63*02	91.8	Mo_IGHV	-1	ARIGRSNDY	BPPBADBBB	31
H3-9-1	6QD8H	EM	heavy	Homo.sapiens	Hu_IGHV4-4*01	91.8	Hu_IGHV	-1	LRLSHYGGA	BBBBADBBB	31
H3-9-1	6QD8Q	EM	heavy	Homo.sapiens	Hu_IGHV4-4*01	91.8	Hu_IGHV	-1	LRLSHYGGA	BBBBADBBB	31
H3-9-1	6QD8W	EM	heavy	Homo.sapiens	Hu_IGHV4-4*01	91.8	Hu_IGHV	-1	LRLSHYGGA	BBBBADBBB	31

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019