PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for H3-5-2

Summary info for H3-5-2
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H3-5-2	15	28.30	1HI6B	argdY	5	17.86	Hu Mo Ra	heavy	BDGAB	21

Structures in cluster H3-5-2
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H3-5-2	1BOGB	2.6	heavy	Mus.musculus	Mo_IGHV1-15*01	93	Mo_IGHV	-1	TRKDY	BDLDP	5
H3-5-2	1CFNB	2.65	heavy	Mus.musculus	Mo_IGHV1-15*01	93	Mo_IGHV	-1	TRKDY	BDLDP	6
H3-5-2	1CFQB	2.8	heavy	Mus.musculus	Mo_IGHV1-15*01	93	Mo_IGHV	-1	TRKDY	BDLAB	13
H3-5-2	1CFSB	2.75	heavy	Mus.musculus	Mo_IGHV1-15*01	93	Mo_IGHV	-1	TRKDY	BDLAB	18
H3-5-2	1CFTB	2.8	heavy	Mus.musculus	Mo_IGHV1-15*01	93	Mo_IGHV	-1	TRKDY	BDLDP	7
H3-5-2	1HH6B	2.6	heavy	Mus.musculus	Mo_IGHV1-15*01	93	Mo_IGHV	-1	TRKDY	BDLDP	4
H3-5-2	1HH9B	2.7	heavy	Mus.musculus	Mo_IGHV1-15*01	93	Mo_IGHV	-1	TRKDY	BDLDP	6
H3-5-2	1HI6B	2.55	heavy	Mus.musculus	Mo_IGHV1-15*01	93	Mo_IGHV	-1	TRKDY	BDLDP	0
H3-5-2	4WHTA	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	20
H3-5-2	4WHTC	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	20
H3-5-2	4WHTE	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	20
H3-5-2	4WHTG	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	20
H3-5-2	4WHTI	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	20
H3-5-2	4WHTK	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	21
H3-5-2	4WHTM	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	20
H3-5-2	4WHTO	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	20
H3-5-2	4WHTQ	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	20
H3-5-2	4WHTS	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	21
H3-5-2	4WHTU	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	20
H3-5-2	4WHTX	2.22	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	21
H3-5-2	4WHYG	2.62	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	20
H3-5-2	4WHYI	2.62	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	24
H3-5-2	4WHYK	2.62	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	25
H3-5-2	4WHYM	2.62	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	TRMDY	BDGAB	25
H3-5-2	4XXDB	2.41	heavy	Homo.sapiens	Hu_IGHV3-23*03	91.8	Hu_IGHV	-1	ASGDY	BAGAB	22
H3-5-2	4XXDE	2.41	heavy	Homo.sapiens	Hu_IGHV3-23*03	91.8	Hu_IGHV	-1	ASGDY	BAGAB	27
H3-5-2	5VZXE	2.501	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Mo_IGHV	-1	ASGDY	BDLAB	20
H3-5-2	5VZXH	2.501	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Mo_IGHV	-1	ASGDY	BDGAB	23
H3-5-2	5VZYH	2.32	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Mo_IGHV	-1	ASGDY	BDGAB	25
H3-5-2	6F7TB	2.6	heavy	Mus.musculus	Mo_IGHV9-1*03	91.8	Mo_IGHV	-1	ARGTY	BAGAB	34
H3-5-2	6F7TH	2.6	heavy	Mus.musculus	Mo_IGHV9-1*03	91.8	Mo_IGHV	-1	ARGTY	BAGAB	35
H3-5-2	6OBDB	2.2	heavy	Mus.musculus	Hu_IGHV3-72*01	98.6	Mo_IGHV	-1	TPIDY	BALAB	22
H3-5-2	6OBDH	2.2	heavy	Mus.musculus	Hu_IGHV3-72*01	98.6	Mo_IGHV	-1	TPIDY	BALAB	24

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019