PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for H2-9-3

Summary info for H2-9-3
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H2-9-3	31	3.38	1OSPH	vI-sggsty	10	2.58	Al Ca Hu Mo	heavy	BBPPLLPBB	32

Structures in cluster H2-9-3
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H2-9-3	1OSPH	1.95	heavy	Mus.musculus	Mo_IGHV3-8*02	94.5	Mo_IGHV3-8*02	66.7	YIRYGGGTY	BBBPLLPBB	0
H2-9-3	1YC7A	1.6	heavy	Camelus.dromedarius	Ca_IGHV1S54*01_VHH	90.4	Ca_IGHV1S54*01_VHH	44.4	SISSPGTIY	BBBPPLPBB	39
H2-9-3	1YC7B	1.6	heavy	Camelus.dromedarius	Ca_IGHV1S54*01_VHH	90.4	Ca_IGHV1S54*01_VHH	44.4	SISSPGTIY	BBBPPLPBB	39
H2-9-3	2AGJH	2.6	heavy	Homo.sapiens	Hu_IGHV2-5*01	89	Hu_IGHV2-5*01	77.8	FIYWNDAKR	BBPPLLPBB	27
H2-9-3	3HFMH	3	heavy	Mus.musculus	Mo_IGHV3S1*01	94.5	Mo_IGHV3S1*01	88.9	YVSYSGSTY	BBPPGLPBB	33
H2-9-3	4JN2B	1.71	heavy	Mus.musculus	Hu_IGHV4-61*01	91.8	Mo_IGHV2-9*01	77.8	VIWAGGSTG	BBPPLLPBB	24
H2-9-3	4JN2H	1.71	heavy	Mus.musculus	Hu_IGHV4-61*01	91.8	Mo_IGHV2-9*01	77.8	VIWAGGSTG	BBPPLLPBB	23
H2-9-3	4TVPH	3.1	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	25
H2-9-3	5FYJH	3.11	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLBBB	25
H2-9-3	5FYLH	3.1	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBP	34
H2-9-3	5I1EH	2.7	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	100	VIYSGGSTY	BBPPLLPBB	24
H2-9-3	5I8HI	4.301	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	25
H2-9-3	5I8HK	4.301	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	25
H2-9-3	5KTEH	3.941	heavy	Mus.musculus	Mo_IGHV2-6*02	98.6	Mo_IGHV2-6*02	100	VIWSDGSTT	BBPPLLPPB	32
H2-9-3	5MHSE	3.7	heavy	Mus.musculus	Mo_IGHV2-2*01	95.9	Mo_IGHV2-2*01	100	VIWSGGSTD	BBPPLLPBB	26
H2-9-3	5MHSH	3.7	heavy	Mus.musculus	Mo_IGHV2-2*01	95.9	Mo_IGHV2-2*01	100	VIWSGGSTD	BBPPLLBBB	26
H2-9-3	5MHSN	3.7	heavy	Mus.musculus	Mo_IGHV2-2*01	95.9	Mo_IGHV2-2*01	100	VIWSGGSTD	BBPPLLPBB	26
H2-9-3	5U7MH	3.025	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	26
H2-9-3	5U7OH	3.031	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	26
H2-9-3	5UTFH	3.503	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	24
H2-9-3	5UTYH	3.412	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	25
H2-9-3	5VNWC	2.6	heavy	Synthetic.construct	Al_IGHV3S57*01_VHH	94.5	Al_IGHV3S57*01_VHH	44.4	TITHGTNTY	BBPPLLPBB	22
H2-9-3	5WDUC	7	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	25
H2-9-3	5WDUL	7	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	25
H2-9-3	5WDUT	7	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	25
H2-9-3	6B0NH	3.4	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	26
H2-9-3	6CDE7	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBPPLLPBB	20
H2-9-3	6CDEM	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	20
H2-9-3	6CDEm	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	20
H2-9-3	6CDI5	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBP	37
H2-9-3	6CDIM	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBP	37
H2-9-3	6CDIm	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBP	37
H2-9-3	6CUE5	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLBBP	38
H2-9-3	6CUEM	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLBBP	37
H2-9-3	6CUEm	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBP	38
H2-9-3	6CUF5	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	39
H2-9-3	6D9WH	3.941	heavy	Mus.musculus	Mo_IGHV2-6*02	98.6	Mo_IGHV2-6*02	100	VIWSDGSTT	BBPPLLPPB	33
H2-9-3	6DE7H	4.123	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBB	19
H2-9-3	6MPG5	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBP	38
H2-9-3	6MPGM	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBP	38
H2-9-3	6MPGm	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBP	38
H2-9-3	6MPHM	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	38
H2-9-3	6MPHX	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	38
H2-9-3	6MPHY	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	37
H2-9-3	6N1VM	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	38
H2-9-3	6N1VX	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	38
H2-9-3	6N1VY	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	38
H2-9-3	6N1W5	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	38
H2-9-3	6N1WM	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	38
H2-9-3	6N1Wm	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	38
H2-9-3	6NF2E	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	39
H2-9-3	6NF2J	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	39
H2-9-3	6NF2S	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	39
H2-9-3	6OSY5	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBP	39
H2-9-3	6OSYC	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPBP	39

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019