PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for H2-9-*

Structures in cluster H2-9-*
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H2-9-*	1AY1H	2.2	heavy	Mus.musculus	Mo_IGHV3-1*02	94.5	Mo_IGHV3-1*02	66.7	YITYSGTTD	BBPAAGGLP	-1
H2-9-*	1BGXH	2.3	heavy	Mus.musculus	Mo_IGHV3-1*02	94.5	Mo_IGHV3-1*02	66.7	YITYSGTTD	BBPAABDLP	-1
H2-9-*	1F3RB	NMR	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	91.8	Ra_IGHV2-63*01	55.6	RMWYDGYTA	BPPAALBPP	-1
H2-9-*	1KENH	3.5	heavy	Mus.musculus	Mo_IGHV3-6*01	95.9	Mo_IGHV3-6*01	100	YISYDGSNN	BLPAAGAAG	-1
H2-9-*	1KENT	3.5	heavy	Mus.musculus	Mo_IGHV3-6*01	95.9	Mo_IGHV3-6*01	100	YISYDGSNN	BBPAAGAAG	-1
H2-9-*	1MCOH	3.2	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	91.4	Hu_IGHV4-30-4*01	100	YIYYSGSTY	BBBALLBBB	-1
H2-9-*	1YC8A	2.7	heavy	Camelus.dromedarius	Ca_IGHV1S17*01	94.4	Ca_IGHV1S17*01	33.3	SISSPGTIY	BBALALPPB	-1
H2-9-*	1YC8B	2.7	heavy	Camelus.dromedarius	Ca_IGHV1S17*01	94.4	Ca_IGHV1S17*01	33.3	SISSPGTIY	BBAGALPBB	-1
H2-9-*	1YZZB	2.7	heavy	Camelus.dromedarius	Ca_IGHV1S17*01	94.4	Ca_IGHV1S17*01	33.3	SISSPGTIY	BBAGALPBB	-1
H2-9-*	2AJ3D	2.03	heavy	Homo.sapiens	Hu_IGHV4-59*01	86.1	Hu_IGHV4-59*01	55.6	NVYDSGDTN	BBBABGPBB	-1
H2-9-*	2AJ3F	2.03	heavy	Homo.sapiens	Hu_IGHV4-59*01	86.1	Hu_IGHV4-59*01	55.6	NVYDSGDTN	BBBABGPBB	-1
H2-9-*	3B2VH	3.3	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	YIYYSGSTD	BBPPBGLBB	-1
H2-9-*	3KJ4C	3.1	heavy	Mus.musculus	Mo_IGHV2-9*01	91.8	Mo_IGHV2-9*01	66.7	VIWSGGNTH	BBPAPAPBB	-1
H2-9-*	3KJ4H	3.1	heavy	Mus.musculus	Mo_IGHV2-9*01	91.8	Mo_IGHV2-9*01	66.7	VIWSGGNTH	BBPAPAPBB	-1
H2-9-*	3NN8D	3.1	heavy	Mus.musculus	Mo_IGHV8-12*01	-1	Mo_IGHV8-12*01	100	HIYWDDDKR	BBPAPDPBB	-1
H2-9-*	3NN8G	3.1	heavy	Mus.musculus	Mo_IGHV8-12*01	-1	Mo_IGHV8-12*01	100	HIYWDDDKR	BBPAPAPBB	-1
H2-9-*	3P0GB	3.5	heavy	Lama.glama	La_IGHV1S3*01_VHH	94.5	La_IGHV1S3*01_VHH	88.9	AIHSGGSTN	BBPPDLBBB	-1
H2-9-*	3UAJC	3.232	heavy	Pan.troglodytes	Hu_IGHV4-59*01	89	Hu_IGHV4-59*01	22.2	YAHSRVSAY	BBBADPPPB	-1
H2-9-*	3UAJH	3.232	heavy	Pan.troglodytes	Hu_IGHV4-59*01	89	Hu_IGHV4-59*01	22.2	YAHSRVSAY	BBBADPPPB	-1
H2-9-*	3UC0H	2.71	heavy	Pan.troglodytes	Hu_IGHV4-59*01	89	Hu_IGHV4-59*01	22.2	YAHSRVSAY	BBBADBPPB	-1
H2-9-*	3UC0I	2.71	heavy	Pan.troglodytes	Hu_IGHV4-59*01	89	Hu_IGHV4-59*01	22.2	YAHSRVSAY	BBBADBPPB	-1
H2-9-*	4R4BB	2.199	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	EIKHNGSPN	BBDBPLBPB	-1
H2-9-*	4R4BD	2.199	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	EIKHNGSPN	BBBAPBBPB	-1
H2-9-*	4R4BF	2.199	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	EIKHNGSPN	BBBAPBBPB	-1
H2-9-*	4R4BH	2.199	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	EIKHNGSPN	BBDBPLBPB	-1
H2-9-*	4R4NC	3.56	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	EIKHNGSPN	BBDBPLBPB	-1
H2-9-*	4R4NH	3.56	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	EIKHNGSPN	BBDBPLBPB	-1
H2-9-*	4R4NN	3.56	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	EIKHNGSPN	BBBAAPPPB	-1
H2-9-*	4R4NQ	3.56	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	EIKHNGSPN	BBDBPLBPB	-1
H2-9-*	4R4NW	3.56	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	66.7	EIKHNGSPN	BBDBPLBPB	-1
H2-9-*	4R7NS	3.45	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Hu_IGHV4-28*01	66.7	YIHYSGYTD	BBPAPAPBB	-1
H2-9-*	4RFOH	3.2	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	90.4	Hu_IGHV4-30-4*01	66.7	NIYYIGNTY	BBBAPAPBB	-1
H2-9-*	5BZWB	2.9	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	55.6	EIDHTTSSN	BBPAPAPBB	-1
H2-9-*	5C6TH	3.6	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	90.4	Hu_IGHV4-30-4*01	44.4	NIYYNGRAV	BBBAPAPBB	-1
H2-9-*	5FHBH	1.973	heavy	Homo.sapiens	Hu_IGHV4-59*01	89	Hu_IGHV4-59*01	88.9	YIYYSGSPN	BBBADBPPB	-1
H2-9-*	5FHCA	6.704	heavy	Homo.sapiens	Hu_IGHV4-59*01	89	Hu_IGHV4-59*01	88.9	YIYYSGSPN	BBBADBPPB	-1
H2-9-*	5FHXH	2.55	heavy	Homo.sapiens	Mo_IGHV1S37*01	84.7	CDRLenMismatch	-1	MIWGDGRID	BBPAADLPBB	-1
H2-9-*	5FUOH	3.6	heavy	Homo.sapiens	Hu_IGHV3-23*03	91.8	Mo_IGHV2-9-1*01	44.4	IIWASGTTF	BBPAPAPBB	-1
H2-9-*	5HCGH	2.68	heavy	Homo.sapiens	Mo_IGHV1S37*01	84.7	CDRLenMismatch	-1	MIWGDGRID	BBBAADLPBB	-1
H2-9-*	5KEMD	EM	heavy	Homo.sapiens	Mo_IGHV8-8*01	75	Mo_IGHV8-8*01	88.9	LIWWDDDKY	PPBADBPBB	-1
H2-9-*	5KEMI	EM	heavy	Homo.sapiens	Mo_IGHV8-8*01	75	Mo_IGHV8-8*01	88.9	LIWWDDDKY	PPBADBPBB	-1
H2-9-*	5KJRH	2.98	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	90.4	Hu_IGHV4-30-4*01	66.7	NIYYIGNTY	BBPAPAPBB	-1
H2-9-*	5KOVW	3.245	heavy	Mus.musculus	Mo_IGHV2-2*01	95.8	Mo_IGHV2-2*01	88.9	VIWTGGSTD	BBPPLGLPB	-1
H2-9-*	5LDNH	2.7	heavy	Mus.musculus	Mo_IGHV2-5*01	87.5	Mo_IGHV2-5*01	88.9	VIWRGGTTD	BBPAALAGB	-1
H2-9-*	5LJYH	3	heavy	Homo.sapiens	Hu_IGHV4-38-2*01	97.3	Hu_IGHV4-38-2*01	66.7	EIYHSGSPN	BBABAABPP	-1
H2-9-*	5MWNN	2.2	heavy	Lama.glama	La_IGHV1S3*01_VHH	93.2	La_IGHV1S3*01_VHH	55.6	TEISGGSAN	BPBPLBPPP	-1
H2-9-*	5O2UB	2.76	heavy	Lama.glama	La_IGHV1S3*01_VHH	86.1	La_IGHV1S3*01_VHH	22.2	RIVKGFDPV	BBBPLBPPB	-1
H2-9-*	5O2UD	2.76	heavy	Lama.glama	La_IGHV1S3*01_VHH	86.1	La_IGHV1S3*01_VHH	22.2	RIVKGFDPV	BBBPLBPPB	-1
H2-9-*	6A4KH	3.15	heavy	Homo.sapiens	Hu_IGHV4-61*01	90.4	Hu_IGHV4-61*01	44.4	YSSVSGTSN	BBBAAPPPB	-1
H2-9-*	6A4KI	3.15	heavy	Homo.sapiens	Hu_IGHV4-61*01	90.4	Hu_IGHV4-61*01	44.4	YSSVSGTSN	BBBAPGBPB	-1
H2-9-*	6A4KJ	3.15	heavy	Homo.sapiens	Hu_IGHV4-61*01	90.4	Hu_IGHV4-61*01	44.4	YSSVSGTSN	BBBAAPPPB	-1
H2-9-*	6A4KK	3.15	heavy	Homo.sapiens	Hu_IGHV4-61*01	90.4	Hu_IGHV4-61*01	44.4	YSSVSGTSN	BBBAAPPPB	-1
H2-9-*	6BE2H	1.7	heavy	Homo.sapiens	Hu_IGHV4-59*01	93.2	Hu_IGHV4-59*01	77.8	YIHYSRSTN	BBBADDBBB	-1
H2-9-*	6BE3H	1.6	heavy	Homo.sapiens	Hu_IGHV4-59*01	93.2	Hu_IGHV4-59*01	77.8	YIHYSRSTN	BBBADDBBB	-1
H2-9-*	6BE4H	1.9	heavy	Homo.sapiens	Hu_IGHV4-59*01	93.2	Hu_IGHV4-59*01	77.8	YIHYSRSTN	BBBAADBBB	-1
H2-9-*	6BLIA	2.12	heavy	Homo.sapiens	Hu_IGHV4-59*01	94.5	Hu_IGHV4-59*01	66.7	YIYGSGSAD	BBBGALPBB	-1
H2-9-*	6BLID	2.12	heavy	Homo.sapiens	Hu_IGHV4-59*01	94.5	Hu_IGHV4-59*01	66.7	YIYGSGSAD	BBBGALPBB	-1
H2-9-*	6BP2H	3.172	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	89	Hu_IGHV4-30-4*01	66.7	TISYSGNTY	BBPAPAPBB	-1
H2-9-*	6C5WC	3.1	heavy	Unknown	Al_IGHV3S53*01_VHH	93.1	Al_IGHV3S53*01_VHH	44.4	GIGFGTTTN	BBPAABPBB	-1
H2-9-*	6C5WE	3.1	heavy	Unknown	Al_IGHV3S53*01_VHH	93.1	Al_IGHV3S53*01_VHH	44.4	GIGFGTTTN	BBPAABPBB	-1
H2-9-*	6CH9Q	4.85	heavy	Homo.sapiens	Hu_IGHV4-61*01	75.3	Mo_IGHV3-1*02	55.6	DIHYNGATT	GBBAALPDP	-1
H2-9-*	6CUFM	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	-1
H2-9-*	6CUFm	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	-1
H2-9-*	6DFIH	2.48	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	33.3	CFYYSVDNH	BBBPLDBBB	-1
H2-9-*	6DFJH	2.07	heavy	Homo.sapiens	Hu_IGHV4-59*01	90.4	Hu_IGHV4-59*01	33.3	CFYYSVDNH	BBBPLDBBB	-1
H2-9-*	6DJPC	EM	heavy	Mus.musculus	Mo_IGHV3-6*01	93.2	Mo_IGHV3-6*01	88.9	YISYDGSNS	BBBAPAPBB	-1
H2-9-*	6GLXC	3.396	heavy	Lama.glama	Al_IGHV2S1*01	98.6	Al_IGHV2S1*01	88.9	VIASDGSTY	BBPAAPDBB	-1
H2-9-*	6GLXH	3.396	heavy	Lama.glama	Al_IGHV2S1*01	98.6	Al_IGHV2S1*01	88.9	VIASDGSTY	BBPAAPBPB	-1
H2-9-*	6GV1H	3.4	heavy	Mus.musculus	Mo_IGHV2-6-4*01	97.3	Mo_IGHV2-6-4*01	88.9	MIWGGGRTD	BBDLALPPB	-1
H2-9-*	6IEAH	2	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	97.3	Hu_IGHV4-30-4*01	88.9	YIYDSGSTY	BBBGDDBBB	-1
H2-9-*	6ITCC	EM	heavy	Lama.glama	La_IGHV1S1*01	88.9	La_IGHV1S1*01	0	GMSAGDRSS	BPBLBPBBB	-1
H2-9-*	6IUTH	2.3	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	55.6	YLFDSGSTK	BBBGADPBB	-1
H2-9-*	6NFJB	3.19	heavy	Lama.glama	La_IGHV1S3*01_VHH	95.9	La_IGHV1S3*01_VHH	22.2	AVEYIFNTY	BBPGDAPBB	-1
H2-9-*	6NFJE	3.19	heavy	Lama.glama	La_IGHV1S3*01_VHH	95.9	La_IGHV1S3*01_VHH	22.2	AVEYIFNTY	BBPGDAPBB	-1
H2-9-*	6OSYM	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	-1
H2-9-*	6OT1F	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	-1
H2-9-*	6OT1Q	EM	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	YVHDSGDTN	BBBPLLPDP	-1
H2-9-*	6OT1m	EM	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV4S12*01	50	YVHDSGDTN	BBBPLLPDP	-1
H2-9-*	6OYHF	2.95	heavy	Lama.glama	La_IGHV1S1*01	87.5	La_IGHV1S1*01	0	GVSRRGNTA	BBPAPAPBB	-1
H2-9-*	6OYHH	2.95	heavy	Lama.glama	La_IGHV1S1*01	87.5	La_IGHV1S1*01	0	GVSRRGNTA	BBPAPAPBB	-1
H2-9-*	6OYZE	3.62	heavy	Lama.glama	La_IGHV1S1*01	87.5	La_IGHV1S1*01	0	GVSRRGNTA	BBPAPAPBB	-1
H2-9-*	6OYZF	3.62	heavy	Lama.glama	La_IGHV1S1*01	87.5	La_IGHV1S1*01	0	GVSRRGNTA	BBPAPAPBB	-1
H2-9-*	6OYZH	3.62	heavy	Lama.glama	La_IGHV1S1*01	87.5	La_IGHV1S1*01	0	GVSRRGNTA	BBPAPAPBB	-1
H2-9-*	6QD8H	EM	heavy	Homo.sapiens	Hu_IGHV4-4*01	91.8	Hu_IGHV4-4*01	66.7	EIYYRGSPN	BBBADBLPB	-1
H2-9-*	6QD8Q	EM	heavy	Homo.sapiens	Hu_IGHV4-4*01	91.8	Hu_IGHV4-4*01	66.7	EIYYRGSPN	BBBADBLPB	-1
H2-9-*	6QD8W	EM	heavy	Homo.sapiens	Hu_IGHV4-4*01	91.8	Hu_IGHV4-4*01	66.7	EIYYRGSPN	BBBADBLPB	-1

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019