PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for H2-10-4

Summary info for H2-10-4
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H2-10-4	52	1.94	1DSFH	-Ispgggyiy	23	1.70	Al Hu La Mo Ra	heavy	BBPPLLABBB	18

Structures in cluster H2-10-4
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H2-10-4	1BZ7B	2.5	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	70	YISSGGSSIN	BBPPGAABBB	33
H2-10-4	1DSFH	2	heavy	Mus.musculus	Mo_IGHV5-4*02	94.4	Mo_IGHV5-4*02	70	TISDGGTYID	BBPPLLABBB	0
H2-10-4	1F4WH	2.3	heavy	Mus.musculus	Mo_IGHV5-12-1*01	93.2	Mo_IGHV5-12-1*01	70	FISSGGGRTS	BBPPLLABBB	7
H2-10-4	1F4XH	2.3	heavy	Mus.musculus	Mo_IGHV5-12-1*01	93.2	Mo_IGHV5-12-1*01	70	FISSGGGRTS	BBPPLLABBB	8
H2-10-4	1R24B	3.1	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	70	YISSGGSSIN	BBPPLLABPB	34
H2-10-4	1R24D	3.1	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	70	YISSGGSSIN	BBPPLLABBB	16
H2-10-4	2FJFB	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	15
H2-10-4	2FJFD	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	14
H2-10-4	2FJFF	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	16
H2-10-4	2FJFH	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	14
H2-10-4	2FJFI	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	15
H2-10-4	2FJFK	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	13
H2-10-4	2FJFN	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	17
H2-10-4	2FJFP	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	12
H2-10-4	2FJFR	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	13
H2-10-4	2FJFT	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	15
H2-10-4	2FJFV	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	15
H2-10-4	2FJFX	2.65	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	15
H2-10-4	2H1PH	2.4	heavy	Mus.musculus	Mo_IGHV5-6-2*01	97.3	Mo_IGHV5-6-2*01	70	TINSNGDKTY	BBPPLPABBB	32
H2-10-4	2OQJB	2.8	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	19
H2-10-4	2OQJE	2.8	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	21
H2-10-4	2OQJH	2.8	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	20
H2-10-4	2OQJK	2.8	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	19
H2-10-4	2QQNH	2.2	heavy	Homo.sapiens	Hu_IGHV3-23*01	94.5	Hu_IGHV3-23*01	50	QISPAGGYTN	BBPPLLPPBB	33
H2-10-4	2YBRA	2.55	heavy	Homo.sapiens	Hu_IGHV3-9*01	87.7	Hu_IGHV3-9*01	60	GISRSSGDID	BBPPLLABBB	13
H2-10-4	2YBRD	2.55	heavy	Homo.sapiens	Hu_IGHV3-9*01	87.7	Hu_IGHV3-9*01	60	GISRSSGDID	BBPPLLABBB	13
H2-10-4	2YBRG	2.55	heavy	Homo.sapiens	Hu_IGHV3-9*01	87.7	Hu_IGHV3-9*01	60	GISRSSGDID	BBPPLLABBB	13
H2-10-4	2YC1A	1.9	heavy	Homo.sapiens	Hu_IGHV3-9*01	87.7	Hu_IGHV3-9*01	60	GISRSSGDID	BBPPLLABBB	11
H2-10-4	2YC1D	1.9	heavy	Homo.sapiens	Hu_IGHV3-9*01	87.7	Hu_IGHV3-9*01	60	GISRSSGDID	BBPPLLABBB	12
H2-10-4	3AUVA	2.4	heavy	Homo.sapiens	Hu_IGHV3-64*04	90.4	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	11
H2-10-4	3AUVB	2.4	heavy	Homo.sapiens	Hu_IGHV3-64*04	90.4	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	10
H2-10-4	3AUVC	2.4	heavy	Homo.sapiens	Hu_IGHV3-64*04	90.4	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	10
H2-10-4	3AUVD	2.4	heavy	Homo.sapiens	Hu_IGHV3-64*04	90.4	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	11
H2-10-4	3AUVE	2.4	heavy	Homo.sapiens	Hu_IGHV3-64*04	90.4	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	11
H2-10-4	3AUVF	2.4	heavy	Homo.sapiens	Hu_IGHV3-64*04	90.4	Hu_IGHV3-64*04	50	GITPAGGYTY	BBPPLLABBB	11
H2-10-4	3HAEI	2.9	heavy	Homo.sapiens	Hu_IGHV3-23*03	100	Hu_IGHV3-23*03	40	SIGSSGGGTA	BBPPLLPBBB	35
H2-10-4	3KYMN	2.62	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	50	WIGPSGGITK	BBPPGPAPBB	37
H2-10-4	3OAUH	1.9	heavy	Homo.sapiens	Hu_IGHV3-23*01	72.6	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	16
H2-10-4	3OAYH	1.95	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	16
H2-10-4	3OAYM	1.95	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	16
H2-10-4	3OAZH	1.75	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	15
H2-10-4	3OAZM	1.75	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	13
H2-10-4	3OB0H	2.85	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	21
H2-10-4	3OB0M	2.85	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	21
H2-10-4	3RA7H	2.798	heavy	Mus.musculus	Mo_IGHV5-9-1*01	93.2	Mo_IGHV5-9-1*01	40	SINIGATYAY	BBPPLLDBBB	16
H2-10-4	4F57H	1.7	heavy	Homo.sapiens	Hu_IGHV3-30*02	87.7	Hu_IGHV3-30*02	30	FVPFDRRINY	BBPPLLPPPB	34
H2-10-4	4LU5H	2.9	heavy	Mus.musculus	Mo_IGHV5-12*01	95.9	Mo_IGHV5-12*01	80	YISNGGYKTY	BBPPLLABBB	14
H2-10-4	4LU5I	2.9	heavy	Mus.musculus	Mo_IGHV5-12*01	95.9	Mo_IGHV5-12*01	80	YISNGGYKTY	BBPPLLABBB	13
H2-10-4	4NHGA	8.001	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	19
H2-10-4	4NHGD	8.001	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	19
H2-10-4	4NHGE	8.001	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	19
H2-10-4	4NHGH	8.001	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	19
H2-10-4	4NHGI	8.001	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	19
H2-10-4	4NHGM	8.001	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	19
H2-10-4	4RBPH	1.85	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	14
H2-10-4	4RBPM	1.85	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	13
H2-10-4	4V1DA	3.1	heavy	Homo.sapiens	Hu_IGHV3-9*01	87.7	Hu_IGHV3-9*01	60	GISRSSGDID	BBPPLLABBB	12
H2-10-4	5H8DA	1.89	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	50	RISSGGGTIY	BBPPLLABBB	14
H2-10-4	5H8OA	4.206	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	50	RISSGGGTIY	BBPPLLAPBB	22
H2-10-4	5IBUH	1.71	heavy	Homo.sapiens	Hu_IGHV5-51*01	87.7	Hu_IGHV5-51*01	60	VIHPGDSDST	BBBPLPABBB	39
H2-10-4	5IHZA	1.64	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	90	GISGSGGSTY	BBPPLLABBB	13
H2-10-4	5M2IG	2.15	heavy	Lama.glama	La_IGHV1S2*01_VHH	87.5	La_IGHV1S2*01_VHH	30	NISWRGYNIY	BBPPLLABBB	14
H2-10-4	5M2IH	2.15	heavy	Lama.glama	La_IGHV1S2*01_VHH	87.5	La_IGHV1S2*01_VHH	30	NISWRGYNIY	BBPPLLABBB	14
H2-10-4	5M2II	2.15	heavy	Lama.glama	La_IGHV1S2*01_VHH	87.5	La_IGHV1S2*01_VHH	30	NISWRGYNIY	BBPPLLABBB	14
H2-10-4	5M2IJ	2.15	heavy	Lama.glama	La_IGHV1S2*01_VHH	87.5	La_IGHV1S2*01_VHH	30	NISWRGYNIY	BBPPLLABBB	13
H2-10-4	5M2IK	2.15	heavy	Lama.glama	La_IGHV1S2*01_VHH	87.5	La_IGHV1S2*01_VHH	30	NISWRGYNIY	BBPPLLABBB	14
H2-10-4	5M2IL	2.15	heavy	Lama.glama	La_IGHV1S2*01_VHH	87.5	La_IGHV1S2*01_VHH	30	NISWRGYNIY	BBPPLLABBB	14
H2-10-4	5O6VH	EM	heavy	Mus.musculus	Mo_IGHV5-6-3*01	95.9	Mo_IGHV5-6-3*01	60	ATNSDGDSTY	PBPPLLABBB	24
H2-10-4	5O6VI	EM	heavy	Mus.musculus	Mo_IGHV5-6-3*01	95.9	Mo_IGHV5-6-3*01	60	ATNSDGDSTY	BBPPLLABBB	20
H2-10-4	6CRKH	2	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	90	YISSGSGTIY	BBPPLLABBB	10
H2-10-4	6CXGH	2.298	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	14
H2-10-4	6CXGM	2.298	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	13
H2-10-4	6CXLH	3.586	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	14
H2-10-4	6CXLM	3.586	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	13
H2-10-4	6DDEE	EM	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	90	YISSGSGTIY	BBPPLLABBB	10
H2-10-4	6DZZB	EM	heavy	Mus.musculus	Mo_IGHV1-82*01	94.5	Mo_IGHV1-82*01	90	RIYPGDGDTK	BBPPLLABBB	23
H2-10-4	6E5P2	EM	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABPB	29
H2-10-4	6E5P3	EM	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	21
H2-10-4	6E5PH	EM	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	21
H2-10-4	6E5PM	EM	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABPB	29
H2-10-4	6E5PR	EM	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABPB	29
H2-10-4	6E5PS	EM	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	21
H2-10-4	6FE4F	3	heavy	Vicugna.pacos	Al_IGHV3S30*01	94.5	Al_IGHV3S30*01	60	GINTGGVGTR	BBPPLLAPBB	21
H2-10-4	6FE4G	3	heavy	Vicugna.pacos	Al_IGHV3S30*01	94.5	Al_IGHV3S30*01	60	GINTGGVGTR	BBPPLLAPBB	19
H2-10-4	6FE4H	3	heavy	Vicugna.pacos	Al_IGHV3S30*01	94.5	Al_IGHV3S30*01	60	GINTGGVGTR	BBPPLLAPBB	18
H2-10-4	6FE4I	3	heavy	Vicugna.pacos	Al_IGHV3S30*01	94.5	Al_IGHV3S30*01	60	GINTGGVGTR	BBPPLLAPBB	20
H2-10-4	6MNFH	2.758	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	14
H2-10-4	6MNFM	2.758	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	13
H2-10-4	6MSYH	1.999	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	17
H2-10-4	6MU3H	2.327	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	15
H2-10-4	6MU3M	2.327	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	15
H2-10-4	6MUBH	2.503	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	16
H2-10-4	6MUBM	2.503	heavy	Homo.sapiens	Hu_IGHV3-21*01	74	Hu_IGHV3-21*01	60	SISTSSTYRD	BBPPLLABBB	16
H2-10-4	6N2XH	3	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	14
H2-10-4	6N2XM	3	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	16
H2-10-4	6N32H	2.2	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	16
H2-10-4	6N32K	2.2	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	17
H2-10-4	6N35H	1.747	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	14
H2-10-4	6N35M	1.747	heavy	Homo.sapiens	Hu_IGHV3-23*01	71.2	Hu_IGHV3-23*01	30	SISTSSTYRD	BBPPLLABBB	16
H2-10-4	6N4BS	EM	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	90	YISSGSGTIY	BBPPLLABBB	17
H2-10-4	6OIJH	EM	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	90	YISSGSGTIY	BBPPLLABBB	16
H2-10-4	6OIKH	EM	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	90	YISSGSGTIY	BBPPLLABBB	18
H2-10-4	6OORH	2.45	heavy	Rattus.norvegicus	Ra_IGHV5S23*01	95.9	Ra_IGHV5S23*01	60	SIRTGDIGTY	BBPPLLAGBB	26
H2-10-4	6OS9D	EM	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	90	YISSGSGTIY	BBPPLLABBB	17
H2-10-4	6P91H	4	heavy	Homo.sapiens	Hu_IGHV3-48*01	89	Hu_IGHV3-48*01	40	SITSGGSKTY	BBPPLLABBB	11
H2-10-4	6QNKB	1.9	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	90	YISSGSGTIY	BBPPLLABBB	10
H2-10-4	6QNKD	1.9	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	90	YISSGSGTIY	BBPPLLABBB	10
H2-10-4	6QNOH	EM	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	90	YISSGSGTIY	BBBPLLAPBB	20

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019