PyIgClassify: An antibody CDRs clusters web site

FCCC

Clusters of Antibody CDR Loop Conformations

Dunbrack Lab

CDR Structures for H1-13-9

Summary info for H1-13-9
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H1-13-9	6	0.18	1KXVD	AASGNTLCTYDMS	5	0.33	Al Ca Hu La Mo	heavy	BBPLBAAPBBPBB	32

Structures in cluster H1-13-9
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H1-13-9	1KXVC	1.6	heavy	Camelus.dromedarius	Ca_IGHV1S52*01_VHH	84.9	Ca_IGHV1S52*01_VHH	76.9	AASGNTLCTYDMS	BBBLBAAPBBPBB	8
H1-13-9	1KXVD	1.6	heavy	Camelus.dromedarius	Ca_IGHV1S52*01_VHH	84.9	Ca_IGHV1S52*01_VHH	76.9	AASGNTLCTYDMS	BBPLBAAPBBPBB	0
H1-13-9	1SHMA	1.9	heavy	Lama.glama	La_IGHV1S1*01_VHH	88.9	La_IGHV1S1*01_VHH	53.8	AASGATGSTYDMG	PPBGPAAPPBPBB	35
H1-13-9	1SHMB	1.9	heavy	Lama.glama	La_IGHV1S1*01_VHH	88.9	La_IGHV1S1*01_VHH	53.8	AASGATGSTYDMG	BPBGPAABBBPBB	33
H1-13-9	4JN1H	1.89	heavy	Mus.musculus	Hu_IGHV4-61*01	91.8	Mo_IGHV2-9*01	92.3	TVSGFSLTSYIVD	BBBLPDABPBBBB	34
H1-13-9	4JN2H	1.71	heavy	Mus.musculus	Hu_IGHV4-61*01	91.8	Mo_IGHV2-9*01	92.3	TVSGFSLTSYIVD	BBBLPADBPBBBB	33
H1-13-9	5C6WJ	1.54	heavy	Homo.sapiens	Hu_IGHV1-69*01	100	Hu_IGHV1-69*01	100	KASGGTFSSYAIS	BPBLBDABPBPBB	38
H1-13-9	5UKBa	5.473	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	53.8	VASGRPFRNYRLG	BBBGBAPBPBPBB	35
H1-13-9	5UKBb	5.473	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	53.8	VASGRPFRNYRLG	BBBGBAPBPBPBB	35
H1-13-9	5UKBc	5.473	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	53.8	VASGRPFRNYRLG	BBBGBAPBPBPBB	35
H1-13-9	5UKBd	5.473	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	53.8	VASGRPFRNYRLG	BBBGBAPBPBPBB	35
H1-13-9	5UKBe	5.473	heavy	Vicugna.pacos	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	53.8	VASGRPFRNYRLG	BBBGBAPBPBPBB	35

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019

Contact Us | ProtCiD | ProtBuD | Dunbrack Laboratory | Fox Chase Cancer Center