PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for H1-13-8

Summary info for H1-13-8
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H1-13-8	51	1.50	1HCVA	aASGaTgssddig	5	0.33	Hu La Mo	heavy	PBBGLBGAABBBB	38

Structures in cluster H1-13-8
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H1-13-8	1HCVA	1.85	heavy	Lama.glama	La_IGHV1S1*01_VHH	88.9	La_IGHV1S1*01_VHH	53.8	AASGRTGSTYDMG	PBBGLBGAABBBB	0
H1-13-8	1K4CA	2	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	1K4DA	2.3	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	1R3IH	2.4	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PPBGPBBAAPBBB	38
H1-13-8	1R3JB	1.9	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	1R3KB	2.8	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	BBBGPBBDAPBBB	39
H1-13-8	1R3LB	2.41	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	39
H1-13-8	1S5HB	2.2	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	39
H1-13-8	1SHME	1.9	heavy	Lama.glama	La_IGHV1S1*01_VHH	88.9	La_IGHV1S1*01_VHH	53.8	AASGATGSTYDMG	PBBGLDPAAPBBB	37
H1-13-8	1ZWIA	2.5	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPPBAAPBBB	39
H1-13-8	2BOBA	2.76	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	BPBGPPBAAPBBB	38
H1-13-8	2BOCA	3.01	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAABBBB	38
H1-13-8	2H8PA	2.25	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	37
H1-13-8	2HFEA	2.25	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	37
H1-13-8	2HG5A	2.75	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	39
H1-13-8	2HVJA	2.75	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	2HVKA	1.9	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	2IH1A	2.4	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PPBGPBBAAPBBB	38
H1-13-8	2IH3A	1.72	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	37
H1-13-8	2ITCA	3.2	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	2JK5A	2.4	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PPBGPBBAAPBBB	38
H1-13-8	2P7TA	2.05	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	2W0FA	2.4	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	3F5WA	3.3	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	3F7VA	3.2	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	BPBGPBBAAPBBB	39
H1-13-8	3F7YA	3.4	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	3FB5A	2.8	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	BPBGPBBAAPBBB	39
H1-13-8	3FB6A	3	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	3FB7A	3.3	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	BPBGPBBAAPBBB	39
H1-13-8	3FB8A	3.4	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	3HPLA	3.2	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	BPBGPPBAAPBPB	37
H1-13-8	3IGAA	2.75	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	BBBGPBBAAPBBB	38
H1-13-8	3OR7A	2.3	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBP	38
H1-13-8	3STLA	2.4	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	3STZA	2.5	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	39
H1-13-8	4LBEA	2.751	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	4LCUA	2.752	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	4MSWA	2.06	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	37
H1-13-8	4UUJA	2.4	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	BBBGPBBAAPBBB	38
H1-13-8	4XCYA	3.96	heavy	Homo.sapiens	Hu_IGHV1-69*01	86.3	Hu_IGHV1-69*01	76.9	KASGGSFSTYALS	PPBGGPDADBPBB	38
H1-13-8	4XCYG	3.96	heavy	Homo.sapiens	Hu_IGHV1-69*01	86.3	Hu_IGHV1-69*01	76.9	KASGGSFSTYALS	PPBGGPDADBPBB	38
H1-13-8	4XCYH	3.96	heavy	Homo.sapiens	Hu_IGHV1-69*01	86.3	Hu_IGHV1-69*01	76.9	KASGGSFSTYALS	PPBGGPDADBPBB	38
H1-13-8	4XCYJ	3.96	heavy	Homo.sapiens	Hu_IGHV1-69*01	86.3	Hu_IGHV1-69*01	76.9	KASGGSFSTYALS	PPBGGPDADBPBB	38
H1-13-8	5EBLA	2.3	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	39
H1-13-8	5EBWA	2.3	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PPBGPBBADPBBB	39
H1-13-8	5VK6A	2.25	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PPBGPBBAAPBBB	38
H1-13-8	5VKEA	2.37	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	5VKHA	2.25	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	38
H1-13-8	6BY2A	2.35	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PPBGPBBAAPBBB	37
H1-13-8	6BY3A	2.37	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PPBGPBBAAPBBB	38
H1-13-8	6NFUA	2.09	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	39
H1-13-8	6NFVA	2.13	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	37
H1-13-8	6PA0A	2.05	heavy	Mus.musculus	Mo_IGHV1S81*01	90.4	Mo_IGHV1S81*01	84.6	KASGYTFTSDWIH	PBBGPBBAAPBBB	39
H1-13-8	6QKDJ	1.9	heavy	Lama.glama	La_IGHV1S3*01	87.7	La_IGHV1S3*01	0	AASGGTFATSPMG	PPBLGBDADPPBB	36

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019