PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for H1-13-6

Summary info for H1-13-6
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H1-13-6	27	0.79	2P45B	aaSGsifssivmg	16	1.05	Al Ca Hu La Mo	heavy	BBBLPABPPABBB	27

Structures in cluster H1-13-6
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H1-13-6	1BZQK	2.8	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	91.8	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPBLPABBPABBB	12
H1-13-6	1BZQL	2.8	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	91.8	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPBLPABBPABBB	14
H1-13-6	1BZQM	2.8	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	91.8	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPBLPABBPABBB	13
H1-13-6	1BZQN	2.8	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	91.8	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPBLPABBPABBB	14
H1-13-6	1RI8A	1.85	heavy	Camelus.dromedarius	Ca_IGHV1S72*01_VHH	87.5	Ca_IGHV1S72*01_VHH	53.8	AVSGYKDRNYCMG	BBBLPABDPBBBB	38
H1-13-6	1YC8B	2.7	heavy	Camelus.dromedarius	Ca_IGHV1S17*01	94.4	Ca_IGHV1S17*01	38.5	AVSGSTYSPCTTG	PBBLPABPPBPBB	35
H1-13-6	1YZZB	2.7	heavy	Camelus.dromedarius	Ca_IGHV1S17*01	94.4	Ca_IGHV1S17*01	38.5	AVSGSTYSPCTTG	PBBLPAPPPBPBB	37
H1-13-6	2P42B	1.8	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	91.8	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPBLBABBPABBB	10
H1-13-6	2P42D	1.8	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	91.8	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPBLBABBPABBB	11
H1-13-6	2P43B	1.65	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	91.8	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPBLBABBPABBB	10
H1-13-6	2P44B	1.8	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	89	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPBLBABBPABBB	10
H1-13-6	2P45B	1.1	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	89	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPBLBABBPABBB	0
H1-13-6	2P46B	2.5	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	89	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPPLBABBPABBB	16
H1-13-6	2P46D	2.5	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	89	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPBLPABBPABBB	13
H1-13-6	2P47B	2.5	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	89	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BBBLPABBPABBB	13
H1-13-6	2P48B	2.3	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	89	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPPLPABBPABBB	15
H1-13-6	2P49B	1.38	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	91.8	Ca_IGHV1S45*01_VHH	61.5	AASGYAYTYIYMG	BPBLBABBPABBB	9
H1-13-6	2P4AB	1.9	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	91.8	Ca_IGHV1S45*01_VHH	53.8	AASGYPWTYIYMG	BPBLPABBPABBB	12
H1-13-6	2P4AD	1.9	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	91.8	Ca_IGHV1S45*01_VHH	53.8	AASGYPWTYIYMG	BPBLPABBPABBB	15
H1-13-6	2XT1B	1.32	heavy	Vicugna.pacos	Al_IGHV3S54*01_VHH	83.6	Al_IGHV3S54*01_VHH	61.5	AASGSFFMSNVMA	PPBLBABBPABBB	19
H1-13-6	2XV6D	1.89	heavy	Vicugna.pacos	Al_IGHV3S54*01_VHH	83.6	Al_IGHV3S54*01_VHH	61.5	AASGSFFMSNVMA	BBPLBPDPBABBB	39
H1-13-6	3EO0B	1.75	heavy	Mus.musculus	Hu_IGHV1-69*01	95.9	Hu_IGHV1-69*01	76.9	KASGYTFSSNVIS	BPBLPABPPABBB	28
H1-13-6	3EO0D	1.75	heavy	Mus.musculus	Hu_IGHV1-69*01	95.9	Hu_IGHV1-69*01	76.9	KASGYTFSSNVIS	BPBLPABPPABBB	28
H1-13-6	3QSKB	1.75	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	91.8	Ca_IGHV1S45*01_VHH	53.8	AASGYHHPYIYMG	BPBLBABPPABBB	14
H1-13-6	4LHJB	1.8	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	94.5	Al_IGHV3S53*01_VHH	61.5	AASGSIVNFETMG	BBBLPABPPABBB	18
H1-13-6	4NNPH	2.69	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	AASGFNFSSSSIH	BPPLBBBPBABBB	38
H1-13-6	4NNPX	2.69	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	AASGFNFSSSSIH	BPPLBBBPBABBB	38
H1-13-6	5DA4A	2.4	heavy	Lama.glama	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	84.6	AASGRTFSSDVMG	BPBGPPBPPABBB	37
H1-13-6	5DA4B	2.4	heavy	Lama.glama	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	84.6	AASGRTFSSDVMG	BPBGPPBPPABBB	39
H1-13-6	5DA4C	2.4	heavy	Lama.glama	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	84.6	AASGRTFSSDVMG	BPBGPPBPPABBB	37
H1-13-6	5HVFB	2.85	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	94.5	Al_IGHV3S53*01_VHH	92.3	AASGSIFSPNAMG	BPBGPPBBPABBB	36
H1-13-6	5HVHC	3	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	94.5	Al_IGHV3S53*01_VHH	92.3	AASGSIFSPNAMG	BBBGPBBBPABBB	36
H1-13-6	5U64B	1.153	heavy	Camelus.dromedarius	Ca_IGHV1S47*01_VHH	86.3	Ca_IGHV1S47*01_VHH	46.2	VASGVTSTRPCIG	BPBLPDBPPPPBB	33
H1-13-6	6C5WC	3.1	heavy	Unknown	Al_IGHV3S53*01_VHH	93.1	Al_IGHV3S53*01_VHH	69.2	AASGTIFSPHYMG	BPBLPABPPABBB	20
H1-13-6	6C5WE	3.1	heavy	Unknown	Al_IGHV3S53*01_VHH	93.1	Al_IGHV3S53*01_VHH	69.2	AASGTIFSPHYMG	BPBLPABPPABBB	16
H1-13-6	6DO1C	2.901	heavy	Synthetic.construct	La_IGHV1S3*01	98.6	La_IGHV1S3*01	0	AASGNIFDVDIMG	BPBGPAPPBABBB	28
H1-13-6	6DO1D	2.901	heavy	Synthetic.construct	La_IGHV1S3*01	98.6	La_IGHV1S3*01	0	AASGNIFDVDIMG	BPBGPAPPBABBB	28
H1-13-6	6GJQB	2.49	heavy	Lama.glama	La_IGHV1S3*01	89	La_IGHV1S3*01	0	ATSGVIFGINAMG	PBBLPADBBPPBB	33
H1-13-6	6GJQD	2.49	heavy	Lama.glama	La_IGHV1S3*01	89	La_IGHV1S3*01	0	ATSGVIFGINAMG	PBBLPADGBABBB	37
H1-13-6	6GJQH	2.49	heavy	Lama.glama	La_IGHV1S3*01	89	La_IGHV1S3*01	0	ATSGVIFGINAMG	PBBLPADGBABBB	38
H1-13-6	6N5EE	3	heavy	Influenza.a.virus	Mo_IGHV5-9-1*02	100	Mo_IGHV5-9-1*02	84.6	AASGFTFSGYDMS	PPBLBAPABABBB	37
H1-13-6	6N5EG	3	heavy	Influenza.a.virus	Mo_IGHV5-9-1*02	100	Mo_IGHV5-9-1*02	84.6	AASGFTFSGYDMS	PPBLBPBABABBB	38
H1-13-6	6N5EH	3	heavy	Influenza.a.virus	Mo_IGHV5-9-1*02	100	Mo_IGHV5-9-1*02	84.6	AASGFTFSGYDMS	PPBLBAPABABBB	39

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019