PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for H1-13-5

Summary info for H1-13-5
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H1-13-5	30	1.14	1MVFA	aASGsifsinamg	26	2.18	Al Ca Hu La Mo	heavy NA	PPBGPAAAPDBBB	21

Structures in cluster H1-13-5
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H1-13-5	1MVFA	1.65	heavy	Camelus.dromedarius	Ca_IGHV1S45*01	98.6	Ca_IGHV1S45*01	69.2	AASGFTYSRKYMG	BPBGPAAAPABBB	0
H1-13-5	1SJXA	2.2	heavy	Lama.glama	La_IGHV1S3*01	94.5	La_IGHV1S3*01	46.2	QASGNIFRINDMG	PPBGPAAAPBPBB	21
H1-13-5	1ZVHA	1.5	heavy	Camelus.dromedarius	Ca_IGHV1S45*01	94.4	Ca_IGHV1S45*01	61.5	AASGYIASINYLG	PBBGPAAAPDBBB	11
H1-13-5	1ZVYA	1.63	heavy	Camelus.dromedarius	Ca_IGHV1S45*01	84.7	Ca_IGHV1S45*01	53.8	AASGSTDSIEYMT	BBBLBDAAPABBB	39
H1-13-5	3EZJB	2.8	heavy	Lama.glama	Al_IGHV3S53*01	95.9	Al_IGHV3S53*01	84.6	AASGSIFSINSMD	BPBGPAAAPDBBB	13
H1-13-5	3EZJD	2.8	heavy	Lama.glama	Al_IGHV3S53*01	95.9	Al_IGHV3S53*01	84.6	AASGSIFSINSMD	PBBGPAAAPDBBB	11
H1-13-5	3EZJF	2.8	heavy	Lama.glama	Al_IGHV3S53*01	95.9	Al_IGHV3S53*01	84.6	AASGSIFSINSMD	PPBGPAAAPDBBB	13
H1-13-5	3EZJH	2.8	heavy	Lama.glama	Al_IGHV3S53*01	95.9	Al_IGHV3S53*01	84.6	AASGSIFSINSMD	BPBGPAAAPDBBB	14
H1-13-5	3TPKA	1.3	heavy	Camelus.dromedarius	Ca_IGHV1S54*01	94.5	Ca_IGHV1S54*01	46.2	TASGYTFSQEFVI	PBBGPAAABABBB	20
H1-13-5	4B50A	1.3	heavy	Lama.glama	Al_IGHV3S53*01	90.4	Al_IGHV3S53*01	61.5	AASGSISSVDVMS	PPABPDADPABBB	39
H1-13-5	4DK3A	2.76	heavy	Lama.glama	Al_IGHV3-3*01	95.9	Al_IGHV3-3*01	76.9	AASGRTSSLYSMG	BBBGPAAAPDPBB	21
H1-13-5	4DK3B	2.76	heavy	Lama.glama	Al_IGHV3-3*01	95.9	Al_IGHV3-3*01	76.9	AASGRTSSLYSMG	BBBGPAAAPDPBB	19
H1-13-5	4DK6A	2.65	heavy	Lama.glama	Al_IGHV3-3*01	95.9	Al_IGHV3-3*01	76.9	AASGRTSSLYSMG	PBBGPAADBDPBB	23
H1-13-5	4DK6B	2.65	heavy	Lama.glama	Al_IGHV3-3*01	95.9	Al_IGHV3-3*01	76.9	AASGRTSSLYSMG	PBBGPAAAPDPBB	20
H1-13-5	4DKAA	1.97	heavy	Lama.glama	Al_IGHV3-3*01	95.9	Al_IGHV3-3*01	76.9	AASGRTSSLYSMG	BPBGPAAAPDPBB	22
H1-13-5	4DKAB	1.97	heavy	Lama.glama	Al_IGHV3-3*01	95.9	Al_IGHV3-3*01	76.9	AASGRTSSLYSMG	BPBGPAAABDPBB	22
H1-13-5	4IDLA	2.09	heavy	Lama.glama	La_IGHV1S3*01	77.8	La_IGHV1S3*01	61.5	LASGNTASIRAMG	BPBGPAAAPABBB	9
H1-13-5	4M3JA	1.95	heavy	Lama.glama	La_IGHV1S3*01	90.4	La_IGHV1S3*01	53.8	AASGSISSITTMG	PBBGPAAAPABBB	9
H1-13-5	4M3JB	1.95	heavy	Lama.glama	La_IGHV1S3*01	90.4	La_IGHV1S3*01	53.8	AASGSISSITTMG	PPBGPAAAPABBB	8
H1-13-5	4WEMB	1.55	heavy	Lama.glama	La_IGHV1S3*01	83.6	La_IGHV1S3*01	53.8	EASGNVDRIDAMG	BPBGPAAAPDPBB	21
H1-13-5	4WENB	1.89	heavy	Lama.glama	Al_IGHV3S53*01	90.4	Al_IGHV3S53*01	84.6	TASGSISSINAMG	BPBGPDAAPDPBB	26
H1-13-5	4X7FC	1.7	heavy	Vicugna.pacos	Al_IGHV3S53*01	90.3	Al_IGHV3S53*01	61.5	AASESILSFNHMA	BBABPAAAPABBB	38
H1-13-5	4X7FD	1.7	heavy	Vicugna.pacos	Al_IGHV3S53*01	90.3	Al_IGHV3S53*01	61.5	AASESILSFNHMA	BBABPAAAPABBB	38
H1-13-5	4ZG1A	1.85	heavy	Lama.glama	La_IGHV1S3*01	93.2	La_IGHV1S3*01	61.5	AASGSTFGIRTMG	PBBGPAAAPABBB	15
H1-13-5	4ZG1B	1.85	heavy	Lama.glama	La_IGHV1S3*01	93.2	La_IGHV1S3*01	61.5	AASGSTFGIRTMG	PBBGPAAAPABBB	14
H1-13-5	4ZG1C	1.85	heavy	Lama.glama	La_IGHV1S3*01	93.2	La_IGHV1S3*01	61.5	AASGSTFGIRTMG	PBBGPAAAPABBB	14
H1-13-5	4ZG1D	1.85	heavy	Lama.glama	La_IGHV1S3*01	93.2	La_IGHV1S3*01	61.5	AASGSTFGIRTMG	BBBGPAAAPABBB	13
H1-13-5	4ZG1E	1.85	heavy	Lama.glama	La_IGHV1S3*01	93.2	La_IGHV1S3*01	61.5	AASGSTFGIRTMG	PBBGPAAAPABBB	13
H1-13-5	4ZG1F	1.85	heavy	Lama.glama	La_IGHV1S3*01	93.2	La_IGHV1S3*01	61.5	AASGSTFGIRTMG	PBBGPAAAPABBB	14
H1-13-5	5BOPA	1.95	heavy	Lama.glama	Al_IGHV3-3*01	95.9	Al_IGHV3-3*01	76.9	AASGGTFSTYGMG	PBBGPAAADABBB	36
H1-13-5	5BOPC	1.95	heavy	Lama.glama	Al_IGHV3-3*01	95.9	Al_IGHV3-3*01	76.9	AASGGTFSTYGMG	PBBGPAAADABBB	36
H1-13-5	5F7LB	2.74	heavy	Lama.glama	La_IGHV1S4*01	90.4	La_IGHV1S4*01	53.8	AASGSIYSLIAMG	PPBGPAAAPDBBB	17
H1-13-5	5F7LD	2.74	heavy	Lama.glama	La_IGHV1S4*01	90.4	La_IGHV1S4*01	53.8	AASGSIYSLIAMG	PPBGPAAAPDBBB	17
H1-13-5	5J1SC	1.399	heavy	Vicugna.pacos	Al_IGHV3S53*01	91.8	Al_IGHV3S53*01	76.9	AASGNIFSFNVMG	PBABPDAAPABBB	39
H1-13-5	5JDSB	1.7	NA	Camelus.dromedarius	Ca_IGHV1S45*01	90.4	Ca_IGHV1S45*01	53.8	AASGKMSSRRCMA	PBBGPAAADAPBB	33
H1-13-5	5M13B	1.372	NA	Synthetic.construct	Hu_IGHV3-64*04	80.8	Hu_IGHV3-64*04	23.1	VASGDIKYISYLG	PBBGPDAAPDBBB	19
H1-13-5	5M14C	1.6	NA	Synthetic.construct	Hu_IGHV3-30*02	82.2	Mo_IGHV5-6-2*01	38.5	AASGQIEHIGYLG	PBBGPDADPDBBB	19
H1-13-5	5M14D	1.6	NA	Synthetic.construct	Hu_IGHV3-30*02	82.2	Mo_IGHV5-6-2*01	38.5	AASGQIEHIGYLG	PBBGPDADPDBBB	19
H1-13-5	5M15C	1.9	NA	Synthetic.construct	Hu_IGHV3-30*02	82.2	Mo_IGHV5-6-2*01	38.5	AASGKIHEIGYLG	PPBGPDAAPABBB	16
H1-13-5	5M15D	1.9	NA	Synthetic.construct	Hu_IGHV3-30*02	82.2	Mo_IGHV5-6-2*01	38.5	AASGKIHEIGYLG	PPBGAAAAPDBBB	16
H1-13-5	5M30D	2.6	NA	Vicugna.pacos	Al_IGHV3S53*01	90.4	Al_IGHV3S53*01	61.5	AASGSISGIVVMA	PBBGPAAAPABBB	8
H1-13-5	5M30E	2.6	NA	Vicugna.pacos	Al_IGHV3S53*01	90.4	Al_IGHV3S53*01	61.5	AASGSISGIVVMA	PBBGPAAAPABBB	9
H1-13-5	5M30F	2.6	NA	Vicugna.pacos	Al_IGHV3S53*01	90.4	Al_IGHV3S53*01	61.5	AASGSISGIVVMA	PBBGPAAAPABBB	8
H1-13-5	5MP2C	2.9	NA	Lama.glama	Ca_IGHV1S45*01	94.5	Ca_IGHV1S45*01	69.2	AASGNTDSSYYMG	PBBGPAAABABBB	21
H1-13-5	5MWND	2.2	NA	Lama.glama	La_IGHV1S3*01	90.4	La_IGHV1S3*01	46.2	AASGSISGIVVMA	PBBGPAAAPABBB	9
H1-13-5	5MWNE	2.2	NA	Lama.glama	La_IGHV1S3*01	90.4	La_IGHV1S3*01	46.2	AASGSISGIVVMA	PBBGPAAAPDBBB	8
H1-13-5	5MWNF	2.2	NA	Lama.glama	La_IGHV1S3*01	90.4	La_IGHV1S3*01	46.2	AASGSISGIVVMA	PBBGPAAAPABBB	8
H1-13-5	5O2UB	2.76	NA	Lama.glama	La_IGHV1S3*01	86.1	La_IGHV1S3*01	53.8	AASGSISRFNAMG	PBPGPAAAPABBB	24
H1-13-5	5O2UD	2.76	NA	Lama.glama	La_IGHV1S3*01	86.1	La_IGHV1S3*01	53.8	AASGSISRFNAMG	PBPGPAAAPABBB	25
H1-13-5	5O8FK	3.2	NA	Lama.glama	Al_IGHV3-3*01	93.2	Al_IGHV3-3*01	61.5	AASGHTFNYPIMG	PBBGPAAABAPBB	23
H1-13-5	5O8FL	3.2	NA	Lama.glama	Al_IGHV3-3*01	93.2	Al_IGHV3-3*01	61.5	AASGHTFNYPIMG	PBBGPAAABAPBB	23
H1-13-5	5O8FM	3.2	NA	Lama.glama	Al_IGHV3-3*01	93.2	Al_IGHV3-3*01	61.5	AASGHTFNYPIMG	PBBGPAAABAPBB	23
H1-13-5	5O8FN	3.2	NA	Lama.glama	Al_IGHV3-3*01	93.2	Al_IGHV3-3*01	61.5	AASGHTFNYPIMG	PBBGPAAABAPBB	23
H1-13-5	5O8FO	3.2	NA	Lama.glama	Al_IGHV3-3*01	93.2	Al_IGHV3-3*01	61.5	AASGHTFNYPIMG	PBBGPAAABAPBB	23
H1-13-5	5OCLB	2.2	NA	Lama.glama	Al_IGHV3-3*01	94.5	Al_IGHV3-3*01	76.9	AASGRTWSIYGMG	PPBGPAAAPDBBB	11
H1-13-5	5OCLD	2.2	NA	Lama.glama	Al_IGHV3-3*01	94.5	Al_IGHV3-3*01	76.9	AASGRTWSIYGMG	BPBGPAAAPDBBB	9
H1-13-5	5OCLE	2.2	NA	Lama.glama	Al_IGHV3-3*01	94.5	Al_IGHV3-3*01	76.9	AASGRTWSIYGMG	BPBGPAAAPDBBB	11
H1-13-5	5OCLG	2.2	NA	Lama.glama	Al_IGHV3-3*01	94.5	Al_IGHV3-3*01	76.9	AASGRTWSIYGMG	PPBGPAAAPDBBB	10
H1-13-5	5OJMK	3.3	NA	Lama.glama	Al_IGHV3-3*01	93.2	Al_IGHV3-3*01	61.5	AASGHTFNYPIMG	PBBGPAAABAPBB	24
H1-13-5	5OJML	3.3	NA	Lama.glama	Al_IGHV3-3*01	93.2	Al_IGHV3-3*01	61.5	AASGHTFNYPIMG	PBBGPAAABAPBB	24
H1-13-5	5OJMM	3.3	NA	Lama.glama	Al_IGHV3-3*01	93.2	Al_IGHV3-3*01	61.5	AASGHTFNYPIMG	PBBGPAAABAPBB	24
H1-13-5	5OJMN	3.3	NA	Lama.glama	Al_IGHV3-3*01	93.2	Al_IGHV3-3*01	61.5	AASGHTFNYPIMG	PBBGPAAABAPBB	24
H1-13-5	5OJMO	3.3	NA	Lama.glama	Al_IGHV3-3*01	93.2	Al_IGHV3-3*01	61.5	AASGHTFNYPIMG	PBBGPAAABAPBB	24

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on June 28, 2018