PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for H1-13-5

Summary info for H1-13-5
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H1-13-5	46	1.35	1MVFA	aaSGsifsi-amg	35	2.31	Al Ca La	heavy	PPBGPAAAPDBBB	22

Structures in cluster H1-13-5
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H1-13-5	1MVFA	1.65	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	98.6	Ca_IGHV1S45*01_VHH	69.2	AASGFTYSRKYMG	BPBGPAAAPABBB	0
H1-13-5	1SJXA	2.2	heavy	Lama.glama	La_IGHV1S3*01_VHH	94.5	La_IGHV1S3*01_VHH	46.2	QASGNIFRINDMG	PPBGPAAAPBPBB	21
H1-13-5	1ZVHA	1.5	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	94.4	Ca_IGHV1S45*01_VHH	61.5	AASGYIASINYLG	PBBGPAAAPDBBB	11
H1-13-5	1ZVYA	1.63	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	84.7	Ca_IGHV1S45*01_VHH	53.8	AASGSTDSIEYMT	BBBLBDAAPABBB	39
H1-13-5	3EZJB	2.8	heavy	Lama.glama	La_IGHV1S3*01_VHH	95.9	La_IGHV1S3*01_VHH	46.2	AASGSIFSINSMD	BPBGPAAAPDBBB	13
H1-13-5	3EZJD	2.8	heavy	Lama.glama	La_IGHV1S3*01_VHH	95.9	La_IGHV1S3*01_VHH	46.2	AASGSIFSINSMD	PBBGPAAAPDBBB	11
H1-13-5	3EZJF	2.8	heavy	Lama.glama	La_IGHV1S3*01_VHH	95.9	La_IGHV1S3*01_VHH	46.2	AASGSIFSINSMD	PPBGPAAAPDBBB	13
H1-13-5	3EZJH	2.8	heavy	Lama.glama	La_IGHV1S3*01_VHH	95.9	La_IGHV1S3*01_VHH	46.2	AASGSIFSINSMD	BPBGPAAAPDBBB	14
H1-13-5	3TPKA	1.3	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	93.2	Ca_IGHV1S45*01_VHH	46.2	TASGYTFSQEFVI	PBBGPAAABABBB	20
H1-13-5	4B50A	1.3	heavy	Lama.glama	La_IGHV1S3*01_VHH	87.7	La_IGHV1S3*01_VHH	38.5	AASGSISSVDVMS	PPABPDADPABBB	39
H1-13-5	4DK3A	2.76	heavy	Lama.glama	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	76.9	AASGRTSSLYSMG	BBBGPAAAPDPBB	21
H1-13-5	4DK3B	2.76	heavy	Lama.glama	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	76.9	AASGRTSSLYSMG	BBBGPAAAPDPBB	19
H1-13-5	4DK6A	2.65	heavy	Lama.glama	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	76.9	AASGRTSSLYSMG	PBBGPAADBDPBB	23
H1-13-5	4DK6B	2.65	heavy	Lama.glama	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	76.9	AASGRTSSLYSMG	PBBGPAAAPDPBB	20
H1-13-5	4DKAA	1.97	heavy	Lama.glama	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	76.9	AASGRTSSLYSMG	BPBGPAAAPDPBB	22
H1-13-5	4DKAB	1.97	heavy	Lama.glama	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	76.9	AASGRTSSLYSMG	BPBGPAAABDPBB	22
H1-13-5	4IDLA	2.09	heavy	Lama.glama	La_IGHV1S3*01_VHH	77.8	La_IGHV1S3*01_VHH	61.5	LASGNTASIRAMG	BPBGPAAAPABBB	9
H1-13-5	4M3JA	1.95	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	53.8	AASGSISSITTMG	PBBGPAAAPABBB	9
H1-13-5	4M3JB	1.95	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	53.8	AASGSISSITTMG	PPBGPAAAPABBB	8
H1-13-5	4WEMB	1.55	heavy	Lama.glama	La_IGHV1S3*01_VHH	83.6	La_IGHV1S3*01_VHH	53.8	EASGNVDRIDAMG	BPBGPAAAPDPBB	21
H1-13-5	4WENB	1.89	heavy	Lama.glama	La_IGHV1S3*01_VHH	89	La_IGHV1S3*01_VHH	53.8	TASGSISSINAMG	BPBGPDAAPDPBB	26
H1-13-5	4X7FC	1.7	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	90.3	Al_IGHV3S53*01_VHH	61.5	AASESILSFNHMA	BBABPAAAPABBB	38
H1-13-5	4X7FD	1.7	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	90.3	Al_IGHV3S53*01_VHH	61.5	AASESILSFNHMA	BBABPAAAPABBB	38
H1-13-5	4ZG1A	1.85	heavy	Lama.glama	La_IGHV1S3*01_VHH	93.2	La_IGHV1S3*01_VHH	61.5	AASGSTFGIRTMG	PBBGPAAAPABBB	15
H1-13-5	4ZG1B	1.85	heavy	Lama.glama	La_IGHV1S3*01_VHH	93.2	La_IGHV1S3*01_VHH	61.5	AASGSTFGIRTMG	PBBGPAAAPABBB	14
H1-13-5	4ZG1C	1.85	heavy	Lama.glama	La_IGHV1S3*01_VHH	93.2	La_IGHV1S3*01_VHH	61.5	AASGSTFGIRTMG	PBBGPAAAPABBB	14
H1-13-5	4ZG1D	1.85	heavy	Lama.glama	La_IGHV1S3*01_VHH	93.2	La_IGHV1S3*01_VHH	61.5	AASGSTFGIRTMG	BBBGPAAAPABBB	13
H1-13-5	4ZG1E	1.85	heavy	Lama.glama	La_IGHV1S3*01_VHH	93.2	La_IGHV1S3*01_VHH	61.5	AASGSTFGIRTMG	PBBGPAAAPABBB	13
H1-13-5	4ZG1F	1.85	heavy	Lama.glama	La_IGHV1S3*01_VHH	93.2	La_IGHV1S3*01_VHH	61.5	AASGSTFGIRTMG	PBBGPAAAPABBB	14
H1-13-5	5BOPA	1.95	heavy	Lama.glama	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	76.9	AASGGTFSTYGMG	PBBGPAAADABBB	36
H1-13-5	5BOPC	1.95	heavy	Lama.glama	Al_IGHV3-3*01_VHH	95.9	Al_IGHV3-3*01_VHH	76.9	AASGGTFSTYGMG	PBBGPAAADABBB	36
H1-13-5	5F7LB	2.74	heavy	Lama.glama	La_IGHV1S3*01_VHH	93.2	La_IGHV1S3*01_VHH	53.8	AASGSIYSLIAMG	PPBGPAAAPDBBB	17
H1-13-5	5F7LD	2.74	heavy	Lama.glama	La_IGHV1S3*01_VHH	93.2	La_IGHV1S3*01_VHH	53.8	AASGSIYSLIAMG	PPBGPAAAPDBBB	17
H1-13-5	5J1SC	1.399	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	91.8	Al_IGHV3S53*01_VHH	76.9	AASGNIFSFNVMG	PBABPDAAPABBB	39
H1-13-5	5JDSB	1.7	heavy	Camelus.dromedarius	Ca_IGHV1S45*01_VHH	90.4	Ca_IGHV1S45*01_VHH	53.8	AASGKMSSRRCMA	PBBGPAAADAPBB	33
H1-13-5	5M13B	1.372	heavy	Synthetic.construct	Ca_IGHV1S45*01_VHH	95.9	Ca_IGHV1S45*01_VHH	30.8	VASGDIKYISYLG	PBBGPDAAPDBBB	19
H1-13-5	5M14C	1.6	heavy	Synthetic.construct	Ca_IGHV1S45*01_VHH	95.9	Ca_IGHV1S45*01_VHH	38.5	AASGQIEHIGYLG	PBBGPDADPDBBB	19
H1-13-5	5M14D	1.6	heavy	Synthetic.construct	Ca_IGHV1S45*01_VHH	95.9	Ca_IGHV1S45*01_VHH	38.5	AASGQIEHIGYLG	PBBGPDADPDBBB	19
H1-13-5	5M15C	1.9	heavy	Synthetic.construct	Ca_IGHV1S45*01_VHH	95.9	Ca_IGHV1S45*01_VHH	38.5	AASGKIHEIGYLG	PPBGPDAAPABBB	16
H1-13-5	5M15D	1.9	heavy	Synthetic.construct	Ca_IGHV1S45*01_VHH	95.9	Ca_IGHV1S45*01_VHH	38.5	AASGKIHEIGYLG	PPBGAAAAPDBBB	16
H1-13-5	5M30D	2.6	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	90.4	Al_IGHV3S53*01_VHH	61.5	AASGSISGIVVMA	PBBGPAAAPABBB	8
H1-13-5	5M30E	2.6	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	90.4	Al_IGHV3S53*01_VHH	61.5	AASGSISGIVVMA	PBBGPAAAPABBB	9
H1-13-5	5M30F	2.6	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	90.4	Al_IGHV3S53*01_VHH	61.5	AASGSISGIVVMA	PBBGPAAAPABBB	8
H1-13-5	5MP2C	2.9	heavy	Lama.glama	Ca_IGHV1S45*01_VHH	94.5	Ca_IGHV1S45*01_VHH	69.2	AASGNTDSSYYMG	PBBGPAAABABBB	21
H1-13-5	5MWND	2.2	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	46.2	AASGSISGIVVMA	PBBGPAAAPABBB	9
H1-13-5	5MWNE	2.2	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	46.2	AASGSISGIVVMA	PBBGPAAAPDBBB	8
H1-13-5	5MWNF	2.2	heavy	Lama.glama	La_IGHV1S3*01_VHH	90.4	La_IGHV1S3*01_VHH	46.2	AASGSISGIVVMA	PBBGPAAAPABBB	8
H1-13-5	5O2UB	2.76	heavy	Lama.glama	La_IGHV1S3*01_VHH	86.1	La_IGHV1S3*01_VHH	53.8	AASGSISRFNAMG	PBPGPAAAPABBB	24
H1-13-5	5O2UD	2.76	heavy	Lama.glama	La_IGHV1S3*01_VHH	86.1	La_IGHV1S3*01_VHH	53.8	AASGSISRFNAMG	PBPGPAAAPABBB	25
H1-13-5	5O8FK	3.2	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	53.8	AASGHTFNYPIMG	PBBGPAAABAPBB	23
H1-13-5	5O8FL	3.2	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	53.8	AASGHTFNYPIMG	PBBGPAAABAPBB	23
H1-13-5	5O8FM	3.2	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	53.8	AASGHTFNYPIMG	PBBGPAAABAPBB	23
H1-13-5	5O8FN	3.2	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	53.8	AASGHTFNYPIMG	PBBGPAAABAPBB	23
H1-13-5	5O8FO	3.2	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	53.8	AASGHTFNYPIMG	PBBGPAAABAPBB	23
H1-13-5	5OCLB	2.2	heavy	Lama.glama	Al_IGHV3-3*01_VHH	94.5	Al_IGHV3-3*01_VHH	76.9	AASGRTWSIYGMG	PPBGPAAAPDBBB	11
H1-13-5	5OCLD	2.2	heavy	Lama.glama	Al_IGHV3-3*01_VHH	94.5	Al_IGHV3-3*01_VHH	76.9	AASGRTWSIYGMG	BPBGPAAAPDBBB	9
H1-13-5	5OCLE	2.2	heavy	Lama.glama	Al_IGHV3-3*01_VHH	94.5	Al_IGHV3-3*01_VHH	76.9	AASGRTWSIYGMG	BPBGPAAAPDBBB	11
H1-13-5	5OCLG	2.2	heavy	Lama.glama	Al_IGHV3-3*01_VHH	94.5	Al_IGHV3-3*01_VHH	76.9	AASGRTWSIYGMG	PPBGPAAAPDBBB	10
H1-13-5	5OJMK	3.3	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	53.8	AASGHTFNYPIMG	PBBGPAAABAPBB	24
H1-13-5	5OJML	3.3	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	53.8	AASGHTFNYPIMG	PBBGPAAABAPBB	24
H1-13-5	5OJMM	3.3	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	53.8	AASGHTFNYPIMG	PBBGPAAABAPBB	24
H1-13-5	5OJMN	3.3	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	53.8	AASGHTFNYPIMG	PBBGPAAABAPBB	24
H1-13-5	5OJMO	3.3	heavy	Lama.glama	La_IGHV1S1*01_VHH	90.4	La_IGHV1S1*01_VHH	53.8	AASGHTFNYPIMG	PBBGPAAABAPBB	24
H1-13-5	6A96K	EM	heavy	Lama.glama	La_IGHV1S3*01	90.4	La_IGHV1S3*01	0	AASGHTFNYPIMG	PBBGPAAABABBB	25
H1-13-5	6A96L	EM	heavy	Lama.glama	La_IGHV1S3*01	90.4	La_IGHV1S3*01	0	AASGHTFNYPIMG	PPBGPDAABAPBB	34
H1-13-5	6A96O	EM	heavy	Lama.glama	La_IGHV1S3*01	90.4	La_IGHV1S3*01	0	AASGHTFNYPIMG	BBBGPAAABABPB	29
H1-13-5	6DBDA	1.755	heavy	Lama.glama	La_IGHV1S3*01_VHH	74	La_IGHV1S3*01_VHH	30.8	VTSGRIEGILLVG	BBBGPAAAPABBB	10
H1-13-5	6DBDB	1.755	heavy	Lama.glama	La_IGHV1S3*01_VHH	74	La_IGHV1S3*01_VHH	30.8	VTSGRIEGILLVG	BPBGPAAAPABBB	10
H1-13-5	6DBDC	1.755	heavy	Lama.glama	La_IGHV1S3*01_VHH	74	La_IGHV1S3*01_VHH	30.8	VTSGRIEGILLVG	BPBGPAAAPABBB	9
H1-13-5	6DBDD	1.755	heavy	Lama.glama	La_IGHV1S3*01_VHH	74	La_IGHV1S3*01_VHH	30.8	VTSGRIEGILLVG	BBBGPDAAPABBB	14
H1-13-5	6GJUB	2.6	heavy	Lama.glama	La_IGHV1S3*01	94.5	La_IGHV1S3*01	0	AASGSTFAIIAMG	PPBGPAAAPDBBP	17
H1-13-5	6H02B	2.8	heavy	Lama.glama	La_IGHV1S2*01_VHH	89	La_IGHV1S2*01_VHH	46.2	AVSGRTGSIYTMG	PPBGBPLAPDBBB	34
H1-13-5	6H16B	2.9	heavy	Lama.glama	La_IGHV1S3*01	94.5	La_IGHV1S3*01	0	AASGRTFSIYTIG	PPBGPAAAPABBB	13
H1-13-5	6H6ZC	2.085	heavy	Vicugna.pacos	Al_IGHV3-3*01	89	Al_IGHV3-3*01	0	AVSGRTIDVSVMA	PBBGPAADPDBBB	18
H1-13-5	6H6ZD	2.085	heavy	Vicugna.pacos	Al_IGHV3-3*01	89	Al_IGHV3-3*01	0	AVSGRTIDVSVMA	PBBGPAADPDBBB	17
H1-13-5	6H70C	1.83	heavy	Vicugna.pacos	Al_IGHV3-3*01	89	Al_IGHV3-3*01	0	AVSGRTIDVSVMA	PBBGPAADPDBBB	17
H1-13-5	6H70D	1.83	heavy	Vicugna.pacos	Al_IGHV3-3*01	89	Al_IGHV3-3*01	0	AVSGRTIDVSVMA	PBBGPAADPDBBB	17
H1-13-5	6HD8A	2.4	heavy	Escherichia.coli.(strain.k12)	Al_IGHV3S53*01	97.3	Al_IGHV3S53*01	0	AASGSILYFNRMG	PBBBPAAAPABBB	32
H1-13-5	6HD9A	3.5	heavy	Escherichia.coli.(strain.k12)	Al_IGHV3S53*01	97.3	Al_IGHV3S53*01	0	AASGSILYFNRMG	PBBBPAAAPABBB	32
H1-13-5	6HDAA	3.8	heavy	Escherichia.coli.(strain.k12)	Al_IGHV3S53*01	97.3	Al_IGHV3S53*01	0	AASGSILYFNRMG	PBBBPAAAPABPB	36
H1-13-5	6HDBA	2.9	heavy	Escherichia.coli.(strain.k12)	Al_IGHV3S53*01	97.3	Al_IGHV3S53*01	0	AASGSILYFNRMG	PBBBPAAAPABBB	31
H1-13-5	6HDCA	3.4	heavy	Escherichia.coli.(strain.k12)	Al_IGHV3S53*01	97.3	Al_IGHV3S53*01	0	AASGSILYFNRMG	PBBBPAAAPABBB	32
H1-13-5	6QTLA	2.25	heavy	Camelus.dromedarius	Al_IGHV3-3*01_VHH	93.2	Al_IGHV3-3*01_VHH	53.8	TASGRTGTIYSMA	PBBGPAAABABBB	13
H1-13-5	6QTLB	2.25	heavy	Camelus.dromedarius	Al_IGHV3-3*01_VHH	93.2	Al_IGHV3-3*01_VHH	53.8	TASGRTGTIYSMA	BBBGPAAABABBB	11
H1-13-5	6QTLC	2.25	heavy	Camelus.dromedarius	Al_IGHV3-3*01_VHH	93.2	Al_IGHV3-3*01_VHH	53.8	TASGRTGTIYSMA	BBBGPAAAPABBB	9
H1-13-5	6QTLD	2.25	heavy	Camelus.dromedarius	Al_IGHV3-3*01_VHH	93.2	Al_IGHV3-3*01_VHH	53.8	TASGRTGTIYSMA	BPBGPAAAPABBB	8
H1-13-5	6QTLE	2.25	heavy	Camelus.dromedarius	Al_IGHV3-3*01_VHH	93.2	Al_IGHV3-3*01_VHH	53.8	TASGRTGTIYSMA	BBBGAAAAPABBB	12
H1-13-5	6QTLF	2.25	heavy	Camelus.dromedarius	Al_IGHV3-3*01_VHH	93.2	Al_IGHV3-3*01_VHH	53.8	TASGRTGTIYSMA	BBBGPAAAPABBB	11
H1-13-5	6QTLG	2.25	heavy	Camelus.dromedarius	Al_IGHV3-3*01_VHH	93.2	Al_IGHV3-3*01_VHH	53.8	TASGRTGTIYSMA	BBBGPAAAPABBB	9
H1-13-5	6QTLH	2.25	heavy	Camelus.dromedarius	Al_IGHV3-3*01_VHH	93.2	Al_IGHV3-3*01_VHH	53.8	TASGRTGTIYSMA	BBBGPAAAPABBB	11
H1-13-5	6QUZE	3.21	heavy	Synthetic.construct	Ca_IGHV1S45*01	94.5	Ca_IGHV1S45*01	0	AASGNIHHISYLG	PBBBPPABPABBB	39
H1-13-5	6QUZF	3.21	heavy	Synthetic.construct	Ca_IGHV1S45*01	94.5	Ca_IGHV1S45*01	0	AASGNIHHISYLG	PBBBPPABPABBB	39
H1-13-5	6QV0E	3.12	heavy	Synthetic.construct	Ca_IGHV1S45*01	94.5	Ca_IGHV1S45*01	0	AASGNIHHISYLG	PBBBPPABPDBBB	38
H1-13-5	6QV0F	3.12	heavy	Synthetic.construct	Ca_IGHV1S45*01	94.5	Ca_IGHV1S45*01	0	AASGNIHHISYLG	PBBBPPABPDBBB	38
H1-13-5	6RAHC	EM	heavy	Vicugna.pacos	Al_IGHV3S65*01	95.9	Al_IGHV3S65*01	0	AVSGSALDYNAIG	PBBGAAABBDBBB	35

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019