PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDR Structures for H1-13-2

Summary info for H1-13-2
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H1-13-2	59	1.73	1UWGY	aasggtisdyaig	48	3.16	Al Ca Hu La Mo Ra	heavy	BBADBPAAABPBB	27

Structures in cluster H1-13-2
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H1-13-2	1C5DB	2.4	heavy	Rattus.norvegicus	Ra_IGHV2S8*01	91.8	Ra_IGHV2S8*01	76.9	TVSGFPLTTNGVS	PPDABPAADBPBB	22
H1-13-2	1C5DH	2.4	heavy	Rattus.norvegicus	Ra_IGHV2S8*01	91.8	Ra_IGHV2S8*01	76.9	TVSGFPLTTNGVS	BPBABPAADBBBB	24
H1-13-2	1CR9H	2	heavy	Mus.musculus	Mo_IGHV14-4*02	95.8	Mo_IGHV14-4*02	84.6	TASGFNIKDYYIQ	BBADBPAAABPBB	17
H1-13-2	1CU4H	2.9	heavy	Mus.musculus	Mo_IGHV14-4*02	95.8	Mo_IGHV14-4*02	84.6	TASGFNIKDYYIQ	BPDABBAAABPBB	24
H1-13-2	1FLRH	1.85	heavy	Mus.musculus	Mo_IGHV6-7*02	98.6	Mo_IGHV6-7*02	100	VASGFTFSDYWMN	BPDDBPAAABPBB	28
H1-13-2	1IL1A	2.2	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	69.2	ATSDFNIKDYYIH	BBDABPAAABBBB	28
H1-13-2	1JV5B	2.2	heavy	Homo.sapiens	Mo_IGHV1S68*01	97.3	Mo_IGHV1S68*01	92.3	KASGYNFTSYWIN	PPDPBPAAABPBB	23
H1-13-2	1UWGH	2.79	heavy	Homo.sapiens	Mo_IGHV1S135*01	90.4	Mo_IGHV1S135*01	69.2	KASAYSITDFNIY	BPADBPAAABPBB	8
H1-13-2	1UWGY	2.79	heavy	Homo.sapiens	Mo_IGHV1S135*01	90.4	Mo_IGHV1S135*01	69.2	KASAYSITDFNIY	BPADBPAADBPBB	0
H1-13-2	2R29H	3	heavy	Mus.musculus	Mo_IGHV14-3*02	97.3	Mo_IGHV14-3*02	100	TASGFNIKDTYMH	BPDBBPAAABPBB	28
H1-13-2	2R69H	3.8	heavy	Mus.musculus	Mo_IGHV14-3*02	97.3	Mo_IGHV14-3*02	100	TASGFNIKDTYMH	PPDDBPAAABBBB	30
H1-13-2	2XRAH	2.3	heavy	Homo.sapiens	Hu_IGHV1-69*01	91.5	Hu_IGHV1-69*01	61.5	KTSGGTFNRLAMS	PPAALBAADBBBB	37
H1-13-2	3EFFB	3.8	heavy	Mus.musculus	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	AASGFNISSYSIH	PPDABPAAABBPB	33
H1-13-2	3FKUX	3.2	heavy	Homo.sapiens	Hu_IGHV1-69*01	93.2	Hu_IGHV1-69*01	61.5	TSSEVTFSSFAIS	BPABAPAAABPBB	38
H1-13-2	3FKUY	3.2	heavy	Homo.sapiens	Hu_IGHV1-69*01	93.2	Hu_IGHV1-69*01	61.5	TSSEVTFSSFAIS	BBAPAPDAABPBB	39
H1-13-2	3FKUZ	3.2	heavy	Homo.sapiens	Hu_IGHV1-69*01	93.2	Hu_IGHV1-69*01	61.5	TSSEVTFSSFAIS	BPAPAAAADBPBB	39
H1-13-2	3KYKH	3.2	heavy	Homo.sapiens	Hu_IGHV3-23*01	98.6	Hu_IGHV3-23*01	76.9	AASGFTFSIYPMF	PBAABPAADBPBB	26
H1-13-2	3QNZB	2.2	heavy	Homo.sapiens	Hu_IGHV3-73*01	90.4	Hu_IGHV3-73*01	76.9	AASGFTLSGSNVH	PPDABPAAABPBB	19
H1-13-2	3R0MA	1.5	heavy	Lama.glama	Al_IGHV3-3*01_VHH	94.4	Al_IGHV3-3*01_VHH	69.2	TASGRISSSYDMG	BPABPPPAAPBBB	38
H1-13-2	3RJQB	2.601	heavy	Lama.glama	Al_IGHV3-3*01_VHH	94.4	Al_IGHV3-3*01_VHH	69.2	TASGRISSSYDMG	BPAPBPPAABBBB	36
H1-13-2	4JPVH	2.827	heavy	Homo.sapiens	Hu_IGHV1-46*01	64.9	Hu_IGHV1-46*01	46.2	EASGYNIRDYFIH	BBDPBPAAABPBB	24
H1-13-2	4JPWH	2.904	heavy	Homo.sapiens	Hu_IGHV1-46*01	70.4	Hu_IGHV1-46*01	69.2	QASGYTFTNYILH	PPDABPAAABPBB	24
H1-13-2	4LGPB	2.4	heavy	Vicugna.pacos	Al_IGHV3S65*01_VHH	82.2	Al_IGHV3S65*01_VHH	69.2	AGSGGTLEHYAIG	BPDABPAAAPPBP	26
H1-13-2	4LGPD	2.4	heavy	Vicugna.pacos	Al_IGHV3S65*01_VHH	82.2	Al_IGHV3S65*01_VHH	69.2	AGSGGTLEHYAIG	BPDABPAAAPPBB	25
H1-13-2	4M1CE	3.501	heavy	Homo.sapiens	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	AASGFNVSSYSIH	PBDDBBAADBBBB	25
H1-13-2	4MA1H	2.32	heavy	Mus.musculus	Mo_IGHV2-2*01	95.9	Mo_IGHV2-2*01	92.3	TVSGFSLTTYGVH	PBDABBAADBPBB	22
H1-13-2	4PLKD	4	heavy	Mus.musculus	Mo_IGHV1S29*01	94.4	Mo_IGHV1S29*01	92.3	KASGYTFTDFNMH	PPDABPAAABPBB	26
H1-13-2	4PLKI	4	heavy	Mus.musculus	Mo_IGHV1S29*01	94.4	Mo_IGHV1S29*01	92.3	KASGYTFTDFNMH	PBDABPAAABPBB	27
H1-13-2	4XZUA	2.61	heavy	Mus.musculus	Mo_IGHV9-2-1*01	94.5	Mo_IGHV9-2-1*01	84.6	KASDYTFTDYSLH	BBAPDPDAABPBB	39
H1-13-2	4Z9KB	1.5	heavy	Vicugna.pacos	Al_IGHV3S61*01_VHH	90.3	Al_IGHV3S61*01_VHH	92.3	AASGFTLDDYAIG	BBADBPAAABPBB	19
H1-13-2	5BZWB	2.9	heavy	Homo.sapiens	Hu_IGHV4-34*01	89	Hu_IGHV4-34*01	53.8	AVYNESLSAFSWS	BPDDBPAAABPBB	21
H1-13-2	5CEZH	3.031	heavy	Homo.sapiens	Hu_IGHV4-59*01	91.8	Hu_IGHV4-59*01	92.3	TVSGGSISNYYWS	PBDABPAADBPBB	26
H1-13-2	5E5MD	2.182	heavy	Camelus.dromedarius	Ca_IGHV1S29*01	84.9	Ca_IGHV1S29*01	61.5	AASGSTISSVAVG	PBDABPDAABPBB	32
H1-13-2	5FHCA	6.704	heavy	Homo.sapiens	Hu_IGHV4-59*01	89	Hu_IGHV4-59*01	84.6	TVSGGSLSSFYWS	BBPPBPAAABPBB	27
H1-13-2	5GGTH	2.8	heavy	Homo.sapiens	Hu_IGHV1-69*01	98.6	Hu_IGHV1-69*01	76.9	KTSGDTFSTYAIS	BBAPPPAAABPBB	36
H1-13-2	5GZNC	3	heavy	Homo.sapiens	Hu_IGHV3-30*01	95.9	Hu_IGHV3-30*01	100	AASGFTFSSYAMH	BPDABPAADBPBB	26
H1-13-2	5J57B	1.7	heavy	Vicugna.pacos	Al_IGHV3S65*01_VHH	83.3	Al_IGHV3S65*01_VHH	53.8	AAPEFRLQYYTAG	BBADPPAAABPBB	24
H1-13-2	5JOFA	3.208	heavy	Homo.sapiens	Hu_IGHV1-2*03	98.6	Hu_IGHV1-2*03	100	KASGYTFTGYYMH	BPDDBPAAABPBB	23
H1-13-2	5KOVQ	3.245	heavy	Mus.musculus	Mo_IGHV2-2*01	95.8	Mo_IGHV2-2*01	84.6	TVSGFSLIDYGVH	BPDAPPAAABBBP	32
H1-13-2	5MHSE	3.7	heavy	Mus.musculus	Mo_IGHV2-2*01	95.9	Mo_IGHV2-2*01	76.9	TVSGFSLTNYAIH	BBDDBPAADBBBB	22
H1-13-2	5MHSH	3.7	heavy	Mus.musculus	Mo_IGHV2-2*01	95.9	Mo_IGHV2-2*01	76.9	TVSGFSLTNYAIH	BBDABPAADBPBB	22
H1-13-2	5O04E	2.3	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	93.2	Al_IGHV3S53*01_VHH	30.8	TAPRIIFFMYDVG	BPPPPPAAAPPBB	29
H1-13-2	5O04F	2.3	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	93.2	Al_IGHV3S53*01_VHH	30.8	TAPRIIFFMYDVG	BPPPBPAAAPPBB	29
H1-13-2	5O0WE	2.57	heavy	Vicugna.pacos	Al_IGHV3S65*01_VHH	91.8	Al_IGHV3S65*01_VHH	69.2	AASETALTYYAIG	BBADBPAAABPBB	15
H1-13-2	5O0WF	2.57	heavy	Vicugna.pacos	Al_IGHV3S65*01_VHH	91.8	Al_IGHV3S65*01_VHH	69.2	AASETALTYYAIG	BBADBPAAABPBB	15
H1-13-2	5O0WG	2.57	heavy	Vicugna.pacos	Al_IGHV3S65*01_VHH	91.8	Al_IGHV3S65*01_VHH	69.2	AASETALTYYAIG	BBADBPAAABPBB	14
H1-13-2	5O0WH	2.57	heavy	Vicugna.pacos	Al_IGHV3S65*01_VHH	91.8	Al_IGHV3S65*01_VHH	69.2	AASETALTYYAIG	BBADBPAAABPBB	14
H1-13-2	5UM8H	3.935	heavy	Homo.sapiens	Hu_IGHV4-59*01	82.2	Hu_IGHV4-59*01	76.9	IVSGGSISNYYWT	PBDABPAADBPBB	26
H1-13-2	5V7JH	2.907	heavy	Homo.sapiens	Hu_IGHV4-59*01	91.8	Hu_IGHV4-59*01	92.3	TVSGGSISNYYWS	PBDABPAADBBBB	36
H1-13-2	5V8LG	EM	heavy	Homo.sapiens	Hu_IGHV1-46*01	64.9	Hu_IGHV1-46*01	46.2	EASGYNIRDYFIH	BPPAPPAAABPPB	30
H1-13-2	5V8MH	EM	heavy	Homo.sapiens	Hu_IGHV1-46*01	64.9	Hu_IGHV1-46*01	46.2	EASGYNIRDYFIH	BPDABPAAABPBB	17
H1-13-2	5V8MR	EM	heavy	Homo.sapiens	Hu_IGHV1-46*01	64.9	Hu_IGHV1-46*01	46.2	EASGYNIRDYFIH	BPDABPAAABPBB	17
H1-13-2	5V8MS	EM	heavy	Homo.sapiens	Hu_IGHV1-46*01	64.9	Hu_IGHV1-46*01	46.2	EASGYNIRDYFIH	BPDABPAAABPBB	17
H1-13-2	5VICH	3	heavy	Homo.sapiens	Hu_IGHV3-23*01	90.4	Hu_IGHV3-23*01	76.9	ATSGFTFRDYAMS	PBDABPAAABPBB	25
H1-13-2	5VN8F	EM	heavy	Homo.sapiens	Hu_IGHV1-3*01	87.7	Hu_IGHV1-3*01	46.2	QASGYRFSNFVIH	BPDABPAADBPBB	20
H1-13-2	5VN8H	EM	heavy	Homo.sapiens	Hu_IGHV1-3*01	87.7	Hu_IGHV1-3*01	46.2	QASGYRFSNFVIH	BPDABPAADBPBB	20
H1-13-2	5VN8I	EM	heavy	Homo.sapiens	Hu_IGHV1-3*01	87.7	Hu_IGHV1-3*01	46.2	QASGYRFSNFVIH	BPDABPAADBPBB	20
H1-13-2	5W6DH	3.202	heavy	Homo.sapiens	Hu_IGHV4-59*01	86.3	Hu_IGHV4-59*01	69.2	SVSGASISDHYWS	PBDABPADDBBBB	30
H1-13-2	6CCBD	6.5	heavy	Homo.sapiens	Hu_IGHV4-61*01	89	Mo_IGHV3-8*02	53.8	SVSGDSMNNYYWT	PPDABPDDDBPBB	26
H1-13-2	6CCBH	6.5	heavy	Homo.sapiens	Hu_IGHV4-61*01	89	Mo_IGHV3-8*02	53.8	SVSGDSMNNYYWT	PPDAPPADDBPBB	29
H1-13-2	6CK9H	2.714	heavy	Homo.sapiens	Hu_IGHV4-59*01	91.8	Hu_IGHV4-59*01	92.3	TVSGGSISNYYWS	PBDABPAADBPBB	23
H1-13-2	6CMGC	2.7	heavy	Homo.sapiens	Hu_IGHV1-69*01	95.9	Hu_IGHV1-69*01	76.9	KSSGGTFSNYAIN	BPAABPAADPBBP	29
H1-13-2	6DCQH	EM	heavy	Homo.sapiens	Hu_IGHV3-30*01	83.3	Hu_IGHV3-30*01	46.2	VVSDFPFSKYPMY	BBPPBPAADBPPB	31
H1-13-2	6FGBH	2.9	heavy	Homo.sapiens	Hu_IGHV3-7*01	95.9	Mo_IGHV5-12-4*01	76.9	AVSGFTFSNYGMV	PPDABPAAABPBB	29
H1-13-2	6FYSA	2	heavy	Lama.glama	La_IGHV1S2*01_VHH	86.3	La_IGHV1S2*01_VHH	69.2	AATGFTLENKAIG	BBADPPDADBPBB	25
H1-13-2	6H2YH	2.65	heavy	Homo.sapiens	Hu_IGHV1-69*01	89	Hu_IGHV1-69*01	61.5	KASGGTVIDYPIT	BBAABBAPLBPPB	39
H1-13-2	6IBBB	2.12	heavy	Vicugna.pacos	Al_IGHV3S65*01	89	Al_IGHV3S65*01	0	EASGYTLANYAIG	BBADBPAAABBBB	28
H1-13-2	6IEQH	3.9	heavy	Homo.sapiens	Hu_IGHV4-59*01	82.2	Hu_IGHV4-59*01	76.9	IVSGGSISNYYWT	PPDABPADDBPBB	28
H1-13-2	6MCOH	3.526	heavy	Homo.sapiens	Hu_IGHV4-59*01	82.2	Hu_IGHV4-59*01	76.9	IVSGGSISNYYWT	PBDABPAADBPBB	29
H1-13-2	6MDTH	3.816	heavy	Homo.sapiens	Hu_IGHV4-59*01	82.2	Hu_IGHV4-59*01	76.9	IVSGGSISNYYWT	PBDABPAADBBBB	30
H1-13-2	6MTOH	2.634	heavy	Homo.sapiens	Hu_IGHV1-69*02	83.6	Hu_IGHV1-69*02	76.9	KASGGSFSTYTLS	BPAABPAAAPPBB	29
H1-13-2	6MTPH	2.036	heavy	Homo.sapiens	Hu_IGHV1-69*02	88.9	Hu_IGHV1-69*02	69.2	KASGGTFSTLTLT	BPABGPDADBPBB	36
H1-13-2	6OL5H	2.9	heavy	Homo.sapiens	Hu_IGHV1-3*01	100	Hu_IGHV1-3*01	100	KASGYTFTSYAMH	BBDPBPAAABPBP	26
H1-13-2	6OLPG	EM	heavy	Human.immunodeficiency.virus.1	Hu_IGHV3-30*01	83.3	Hu_IGHV3-30*01	46.2	VVSDFPFSKYPMY	BPDDPPAAABPBB	26
H1-13-2	6QGYD	2.509	heavy	Lama.glama	La_IGHV1S4*01	83.1	La_IGHV1S4*01	0	AASGRTFNGWTAA	BBADBBAADBPBB	23

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019