PyIgClassify: An antibody CDRs clusters web site

FCCC

Clusters of Antibody CDR Loop Conformations

Dunbrack Lab

CDR Structures for H1-13-10

Summary info for H1-13-10
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Species	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
H1-13-10	6	0.23	1RHHB	KASGGTFdmYafh	4	0.34	Hu	heavy	PPAALBDGAPBBB	21

Structures in cluster H1-13-10
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H1-13-10	1RHHB	1.9	heavy	Homo.sapiens	Hu_IGHV1-69*01	85.7	Hu_IGHV1-69*01	69.2	KASGGTFSMYGFN	BPAALBAGDPBBB	0
H1-13-10	1RHHD	1.9	heavy	Homo.sapiens	Hu_IGHV1-69*01	85.7	Hu_IGHV1-69*01	69.2	KASGGTFSMYGFN	PPPLLBAGAPBBB	33
H1-13-10	2DD8H	2.3	heavy	Homo.sapiens	Hu_IGHV1-69*02	95.9	Hu_IGHV1-69*02	100	KASGGTFSSYTIS	BPAALBAGDBBBB	18
H1-13-10	2G75A	2.28	heavy	Homo.sapiens	Hu_IGHV1-69*02	95.9	Hu_IGHV1-69*02	100	KASGGTFSSYTIS	BPAALBAGAPBBP	17
H1-13-10	2G75C	2.28	heavy	Homo.sapiens	Hu_IGHV1-69*02	95.9	Hu_IGHV1-69*02	100	KASGGTFSSYTIS	PPAALBDGAPBBB	17
H1-13-10	3NPSB	1.5	heavy	Homo.sapiens	Hu_IGHV1-69*01	97.3	Hu_IGHV1-69*01	100	KASGGTFSSYAIS	PPAALBAGABBBB	14
H1-13-10	5ALCH	1.7	heavy	Homo.sapiens	Hu_IGHV1-69*01	87.7	Hu_IGHV1-69*01	76.9	KASGGTFDSYSIH	BPAALBDGDPPBB	11
H1-13-10	5I18H	1.92	heavy	Homo.sapiens	Hu_IGHV1-69*01	100	Hu_IGHV1-69*01	100	KASGGTFSSYAIS	PPPLLBDGAPBBB	36

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on June 28, 2018

Contact Us | ProtCiD | ProtBuD | Dunbrack Laboratory | Fox Chase Cancer Center