FCCC    Clusters of Antibody CDR Loop Conformations     Dunbrack Lab
 
    
  • Clusters in our work and those of Chothia et al and Martin-Thornton

    This work # Chothia et al.
    L1-10-1 20 L1-1(1/1)
    L1-10-2 2 -
         
    L1-11-1 76 L1-2A (2/2)
    L1-11-2 55 L1-2B (2/2)
    L1-11-3 5 L1-4λ (1/1)
         
    L1-12-1 5 -
    L1-12-2 - -
    L1-12-3 2 L1-6 (1/1)
         
    L1-13-1 7 L1-1λ (2/2)
    L1-13-2 4 L1-2λ (1/1)
         
    L1-14-1 14 L1-3λ (2/2) 3λB (1/1)
    L1-14-2 4 L1-2λ (1/1)
         
    L1-15-1 11 L1-5 (2/5; 3/5)
    L1-15-2 2 -
         
    L1-16-1 68 L1-4 (3/3)
         
    L1-17-1 21 L1-3 (2/2)
     
    L2-8-1 290 L2-1 (14/16)
    L2-8-2 9 L2-1 (2/16)
    L2-8-3 - -
    L2-8-4 2 -
    L2-8-5 2 -
         
    L2-12-1 2 -
    L2-12-2 2 -
     
    L3-7-1 2 L3-4 (1/1)
         
    L3-8-cis6-1 3 -
    L3-8-1 15 -
    L3-8-2 4 L3-3 (1/3; 2/3)
         
    L3-9-cis6-1 1 L3-2 (1/1)
    L3-9-cis7-1 219 L3-1 (8/9)
    L3-9-cis7-2 8 L3-1 (1/9)
    L3-9-cis7-3 2 -
    L3-9-1 22 L3-1λA (1/2; 1/2), 1C (1/1)
    L3-9-2 12 -
     
    L3-10-cis7,8-1 1 -
    L3-10-cis8-1 2 L3-5 (1/1)
    L3-10-1 6 -
     
    L3-11-cis7-1 1 -
    L3-11-1 9 L3-2λ (2/2)
     
    L3-12-1 1 -
     
    L3-13-1 3 -
     
    H1-10-1 2 -
     
    H1-12-1 1 -
     
    H1-13-cis9-1 2 -
    H1-13-1 267 H1-1 (14/15)
    H1-13-2 7 H1-1 (1/15)
    H1-13-3 5 -
    H1-13-4 4 -
    H1-13-5 4 -
    H1-13-6 4 -
    H1-13-7 3 -
    H1-13-8 3 -
    H1-13-9 3 -
    H1-13-10 2 -
    H1-13-11 2 -
     
    H1-14-1 11 H1-2 (1/1)
     
    H1-15-1 9 H1-3 (4/4)
     
    H1-16-1 1 -
     
    H2-8-1 2 -
     
    H2-9-1 77 H2-1 (3/3)
    H2-9-2 2 -
    H2-9-3 2 -
     
    H2-10-1 155 H2-2A (4/4)
    H2-10-2 42 H2-3A (4/4), 3C (1/1)
    H2-10-3 11 H2-2B (1/1)
    H2-10-4 7 -
    H2-10-5 3 -
    H2-10-6 3 -
    H2-10-7 2 H2-3B (1/1)
    H2-10-8 2 -
    H2-10-9 2 -
     
    H2-12-1 26 H2-4 (1/1)
     
    H2-15-1 1 -

    Our clusters are listed in Column 1 and the number of structures in each is given in Column 2. The closest Chothia canonical classes whose closest cluster in our data are given. The number of each canonical class that are closest to that cluster is given in parentheses along with the total number of members of that canonical class. Thus “(3/4)” means that 3 of 4 members of a Chothia canonical class are closest to our cluster listed on that line. Uncertain assignments are given in bold italic type.