Protein Common Interface Database

Clusters with M>=5,SeqId<90 and pair Pfam Architecture

Pfam Architecture	Cluster#	#CFs/Cluster	#Entries/Cluster	#CFs/Group	#Entries/Group	Minimum Seq Identity	Surface Area	In PDBBA(%)	In PISABA(%)	CFs Cluster/Group(%)
(Proteasome);(Proteasome)_(Pr_beta_C)	1	64	332	68	411	13	1127	100	77	94
(Proteasome);(Proteasome)_(Pr_beta_C)	2	53	269	68	411	13	880	100	75	78
(Proteasome);(Proteasome)_(Pr_beta_C)	3	51	316	68	411	13	1396	100	78	75
(Proteasome);(Proteasome_A_N)_(Proteasome)	1	88	379	88	445	3	427	100	69	100
(Proteasome);(Proteasome_A_N)_(Proteasome)	2	88	379	88	445	2	494	100	71	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	1	68	285	68	411	0	627	100	71	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	2	68	333	68	411	13	622	100	73	100
(ACR_tran);(HlyD_D23)	1	6	12	6	12	15	1142	100	83	100
(ACR_tran);(HlyD_D23)	2	6	12	6	12	15	1363	100	83	100
(Actin);(ARPC4)	2	7	20	8	21	59	417	100	95	88
(Actin);(P21-Arc)	1	8	21	8	21	32	831	100	86	100
(Actin);(P34-Arc)	1	8	21	8	21	45	1563	100	95	100
(ARPC4);(P16-Arc)	1	8	21	8	21	29	874	100	95	100
(ARPC4);(P34-Arc)	1	8	21	8	21	11	1984	100	90	100
(C1-set);(Ig_2)_(ig)	1	5	7	7	8	81	574	100	14	71
(C1-set);(MHC_I)_(C1-set)	1	425	866	426	884	10	1279	100	91	100
(C1-set);(MHC_I)_(C1-set)	2	35	64	426	884	18	349	0	6	8
(C1-set);(MHC_I)_(C1-set)	3	29	87	426	884	18	262	0	0	7
(C1-set);(MHC_I)_(C1-set)	5	27	73	426	884	19	262	0	1	6
(C1-set);(MHC_I)_(C1-set)	6	24	46	426	884	72	334	0	0	6
(C1-set);(MHC_I)_(C1-set)	4	28	39	426	884	36	269	3	8	7
(C1-set);(MHC_I)_(C1-set)	10	14	47	426	884	83	515	0	4	3
(C1-set);(MHC_I)_(C1-set)	7	18	127	426	884	84	210	1	0	4
(C1-set);(MHC_I)_(C1-set)	9	17	41	426	884	22	230	0	0	4
(C1-set);(MHC_I)_(C1-set)	11	14	21	426	884	69	344	0	0	3
(C1-set);(MHC_I)_(C1-set)	13	11	19	426	884	77	307	0	0	3
(C1-set);(MHC_I)_(C1-set)	19	6	17	426	884	82	410	0	0	1
(C1-set);(MHC_I)_(C1-set)	12	14	19	426	884	22	320	21	26	3
(C1-set);(MHC_I)_(C1-set)	15	8	17	426	884	84	245	0	0	2
(C1-set);(MHC_I)_(C1-set)	14	9	12	426	884	69	259	0	0	2
(C1-set);(MHC_I)_(C1-set)	18	7	12	426	884	68	271	0	8	2
(C1-set);(MHC_I)_(C1-set)	16	8	11	426	884	68	383	9	0	2
(C1-set);(MHC_I)_(C1-set)	20	6	10	426	884	43	301	0	0	1
(C1-set);(MHC_I)_(C1-set)	17	8	10	426	884	68	304	0	0	2
(C1-set);(MHC_I)_(C1-set)	22	5	8	426	884	69	248	0	12	1
(C1-set);(MHC_I)_(C1-set)	23	5	6	426	884	70	296	0	0	1
(Ig_2)_(ig);(MHC_I)_(C1-set)	1	5	7	7	8	23	355	100	14	71
(Actin);(Gelsolin)	1	15	30	16	31	75	1183	100	100	94
(Actin);(Gelsolin)	2	10	24	16	31	80	399	0	0	62
(Actin);(Gelsolin)	3	10	24	16	31	80	274	0	0	62
(Actin);(WH2)	1	10	10	11	10	6	942	100	90	91
(Actin);(RPEL)	1	6	7	6	7	28	916	100	100	100
(Activin_recp);(TGF_beta)	1	8	12	12	17	15	784	100	92	67
(Activin_recp);(TGF_beta)	2	8	12	12	17	15	366	83	83	67
(Activin_recp);(TGF_beta)	3	7	8	12	17	41	753	100	50	58
(ecTbetaR2);(TGF_beta)	1	5	5	5	5	64	486	80	60	100
(ETF);(ETF)_(ETF_alpha)	1	10	17	10	17	9	3126	100	94	100
(Adaptin_N);(Clat_adaptor_s)	1	14	16	14	16	11	2689	100	69	100
(Adaptin_N);(Clat_adaptor_s)_(Adap_comp_sub)	1	11	13	11	13	40	3522	100	62	100
(AdenylateSensor);(AMPKBI)	1	6	20	6	21	22	1975	100	100	100
(AdenylateSensor);(CBS)_(CBS)_(CBS)_(CBS)	1	5	17	5	18	22	579	100	100	100
(AMPKBI);(CBS)_(CBS)_(CBS)_(CBS)	1	6	18	6	19	33	1111	100	100	100
(AF-4);(Cyclin_N)_(Cyclin_N)	1	5	5	5	5	23	1523	100	80	100
(Cyclin_N)_(Cyclin_N);(Pkinase)	1	6	7	6	7	14	1034	100	71	100
(Pkinase);(Tat)	1	5	6	6	6	10	227	100	67	83
(Globin);(NEAT)	1	5	5	5	5	45	630	80	60	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	1	9	16	9	17	41	419	100	94	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	2	9	16	9	17	41	692	100	94	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	3	7	14	9	17	43	381	7	7	78
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(FAD_binding_5)_(CO_deh_flav_ C)	1	10	27	10	27	13	1144	100	100	100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(Fer2)_(Fer2_2)	1	9	25	9	25	19	2063	100	100	100
(FAD_binding_5)_(CO_deh_flav_C);(Fer2)_(Fer2_2)	1	9	25	9	25	13	1341	100	100	100
(Alpha_E1_glycop);(Alpha_E2_glycop)	1	5	7	5	7	34	2364	100	57	100
(Amidase);(GatB_N)_(GatB_Yqey)	1	6	12	6	12	37	1326	100	100	100
(Amidase);(Glu-tRNAGln)	1	5	11	5	11	25	2486	100	100	100
(GatB_N)_(GatB_Yqey);(Glu-tRNAGln)	1	5	11	5	11	25	1786	100	100	100
(AMO);(Monooxygenase_B)	1	5	8	5	8	46	3780	100	88	100
(AmoC);(Monooxygenase_B)	1	5	8	5	8	46	806	100	88	100
(Thrombin_light);(Trypsin)	1	109	375	109	435	10	1160	100	97	100
(Thrombin_light);(Trypsin)	2	21	32	109	435	75	260	3	16	19
(Thrombin_light);(Trypsin)	4	6	17	109	435	75	323	0	0	6
(Antistasin);(Trypsin)	1	6	6	6	6	10	625	100	100	100
(Cytochrom_B_C);(Cytochrome_B)	1	5	13	5	13	11	3070	100	100	100
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)	1	9	15	9	15	66	1236	100	80	100
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)	2	5	11	9	15	82	495	0	0	56
(ArsA_ATPase);(CHD5)	1	6	6	6	6	88	516	100	50	100
(ATP1G1_PLM_MAT8);(Na_K-ATPase)	1	5	30	6	37	20	408	100	100	83
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)	1	33	42	41	50	5	868	100	74	80
(ATP-synt_D);(ATP-synt_F)	1	15	18	24	29	18	1495	100	44	62
(Aurora-A_bind);(Pkinase)	1	5	5	5	5	84	1213	100	100	100
(B);(C1-set)_(C1-set)	1	7	11	7	11	56	718	91	64	100
(Skp1_POZ);(ubiquitin)	1	20	58	20	59	10	1076	100	83	100
(SecE);(SecY)	1	5	6	12	9	10	1682	100	100	42
(Histone);(Histone)_(Histone_H2A_C)	1	85	215	85	227	12	2486	100	76	100
(Histone);(Histone)_(Histone_H2A_C)	2	77	197	85	227	40	667	99	74	91
(Histone);(TAF)	1	96	227	97	247	13	2448	100	76	99
(Histone);(TAF)	2	78	193	97	247	9	507	99	73	80
(Histone);(TAF)	3	77	201	97	247	65	264	99	73	79
(Histone);(TAF)	4	8	118	97	247	88	256	0	3	8
(Histone)_(Histone_H2A_C);(TAF)	1	78	203	78	220	12	413	99	74	100
(Bcl-2);(Bclx_interact)	1	8	14	18	27	10	981	100	100	44
(Bcl-2);(Bclx_interact)	2	7	10	18	27	12	1012	100	100	39
(Bcl-2);(BID)	1	7	10	7	10	10	902	100	80	100
(Bclx_interact);(BH4)_(Bcl-2)	1	13	14	13	14	10	1006	100	100	100
(Beta-lactamase2);(BLIP)	1	7	14	7	14	37	1214	93	100	100
(BH3);(BH4)_(Bcl-2)	1	5	7	5	7	9	987	100	57	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	1	11	42	11	42	25	1733	100	95	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	2	11	42	11	42	25	1585	100	95	100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	1	5	10	5	10	34	666	100	100	100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	2	5	10	5	10	34	420	100	100	100
(Bowman-Birk_leg)_(Bowman-Birk_leg);(Trypsin)	1	5	7	6	8	41	588	100	71	83
(Bowman-Birk_leg)_(Bowman-Birk_leg);(Trypsin)	2	5	6	6	8	63	706	83	33	83
(Mago_nashi);(RRM_1)	1	8	9	8	9	69	1315	100	100	100
(MHC_I)_(C1-set);(V-set)_(C1-set)	1	78	151	91	171	10	431	97	40	86
(MHC_I)_(C1-set);(V-set)_(C1-set)	2	15	27	91	171	10	292	0	4	16
(MHC_I)_(C1-set);(V-set)_(C1-set)	3	5	14	91	171	53	303	0	21	5
(MHC_I)_(C1-set);(V-set)_(DUF1968)	1	78	155	82	167	10	477	97	43	95
(V-set)_(C1-set);(V-set)_(DUF1968)	1	208	380	208	390	7	2044	100	86	100
(V-set)_(C1-set);(V-set)_(DUF1968)	2	15	22	208	390	18	764	0	0	7
(V-set)_(C1-set);(V-set)_(DUF1968)	3	7	9	208	390	60	316	0	0	3
(V-set)_(C1-set);(V-set)_(DUF1968)	5	5	8	208	390	59	671	0	0	2
(V-set)_(C1-set);(V-set)_(DUF1968)	4	7	8	208	390	55	396	0	0	3
(V-set)_(C1-set);(V-set)_(DUF1968)	6	5	5	208	390	45	317	0	40	2
(C1-set);(MHC_I_3)_(C1-set)	1	40	134	40	137	12	1251	100	78	100
(MHC_I_3)_(C1-set);(V-set)_(C1-set)	1	10	61	21	76	23	313	98	59	48
(MHC_I_3)_(C1-set);(V-set)_(C1-set)	2	6	7	21	76	48	416	100	43	29
(MHC_I_3)_(C1-set);(V-set)_(DUF1968)	1	9	59	19	74	62	456	98	58	47
(MHC_I_3)_(C1-set);(V-set)_(DUF1968)	2	7	8	19	74	48	489	100	50	37
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	2	10	15	11	16	48	485	93	7	91
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	1	11	16	11	16	43	364	94	6	100
(Pico_P1A);(Rhv)	1	58	137	63	148	10	999	100	61	92
(Pico_P1A);(Rhv)	2	54	134	63	148	0	782	100	56	86
(Pico_P1A);(Rhv)	3	47	114	63	148	10	521	100	55	75
(Ca_chan_IQ);(EF-hand_7)_(EF-hand_7)	1	7	11	9	15	10	1209	91	73	78
(Calici_coat)_(Calici_coat_C);(V-set)	1	5	5	15	18	56	725	100	100	33
(Cas_Cas5d);(Cas_CT1975)	1	8	9	8	9	30	2029	100	78	100
(Cas_Cas5d);(CRISPR_Cse1)	1	8	9	8	9	10	1518	100	78	100
(Cas_CT1975);(CRISPR_assoc)	1	5	6	8	9	80	1004	100	83	62
(Cas_CT1975);(CRISPR_Cse1)	1	8	9	8	9	10	524	100	78	100
(Cas_CT1975);(CRISPR_Cse2)	1	8	9	8	9	17	402	100	78	100
(Cas_CT1975);(CRISPR_Cse2)	2	5	6	8	9	17	250	100	67	62
(CRISPR_Cse1);(CRISPR_Cse2)	1	8	9	8	9	10	476	100	67	100
(ubiquitin);(UQ_con)	1	31	37	48	46	1	646	95	46	65
(ubiquitin);(UQ_con)	2	12	15	48	46	4	645	53	33	25
(Me-amine-dh_H);(Me-amine-dh_L)	1	18	69	18	70	12	1509	99	94	100
(Me-amine-dh_H);(Me-amine-dh_L)	2	18	69	18	70	12	1139	94	96	100
(Cyclin_N)_(Cyclin_C);(Pkinase)	1	35	166	37	183	10	1544	99	93	95
(CENP-S);(CENP-X)	1	6	13	6	13	10	2295	100	100	100
(Spc24);(Spindle_Spc25)	1	6	6	6	6	10	1284	100	83	100
(Chloroa_b-bind);(PsaA_PsaB)	1	5	7	11	7	53	585	100	29	45
(Chloroa_b-bind);(PSI_PSAK)	1	5	6	11	12	30	434	100	17	45
(Fer4_7);(PsaA_PsaB)	1	15	19	15	22	80	410	100	32	100
(Fer4_7);(PsaA_PsaB)	2	15	22	15	22	0	838	100	41	100
(Fer4_7);(PsaD)	1	15	18	15	22	59	1498	100	28	100
(Fer4_7);(PSI_PsaE)	1	15	22	15	22	44	507	100	36	100
(PsaA_PsaB);(PsaD)	1	17	20	17	24	58	785	100	30	100
(PsaA_PsaB);(PsaD)	2	17	20	17	24	58	731	100	30	100
(PsaA_PsaB);(PsaL)	1	14	17	16	23	39	494	100	29	88
(PsaA_PsaB);(PsaL)	2	8	11	16	23	39	332	100	45	50
(PsaA_PsaB);(PSI_8)	1	16	23	16	23	7	641	100	39	100
(PsaA_PsaB);(PSI_PsaE)	1	17	21	17	24	44	406	100	24	100
(PsaA_PsaB);(PSI_PsaE)	2	14	18	17	24	45	285	100	28	82
(PsaA_PsaB);(PSI_PsaF)	1	16	20	16	23	42	937	100	30	100
(PsaA_PsaB);(PSI_PsaF)	2	16	20	16	23	42	1004	100	30	100
(PsaA_PsaB);(PSI_PsaH)	1	5	7	7	11	32	829	100	29	71
(PsaA_PsaB);(PSI_PsaJ)	1	14	18	17	22	45	324	100	33	82
(PsaA_PsaB);(PSI_PSAK)	1	17	21	17	24	4	657	100	14	100
(PsaD);(PsaL)	1	8	11	16	17	39	433	100	45	50
(PsaL);(PSI_8)	1	8	11	16	17	37	230	100	45	50
(PSI_8);(PSI_PsaH)	1	6	7	7	11	40	340	100	14	86
(PSI_PsaE);(PSI_PsaF)	1	12	14	16	14	42	255	100	29	75
(PSI_PsaF);(PSI_PsaJ)	1	16	20	16	23	42	679	100	25	100
(CKS);(Pkinase)	1	8	11	8	11	65	713	100	55	100
(Como_LCP);(Como_SCP)	1	8	10	8	11	37	1743	100	50	100
(Copper-bind);(Me-amine-dh_L)	1	5	9	8	12	62	486	100	89	62
(COX1);(COX2_TM)_(COX2)	1	23	75	23	77	16	3564	100	71	100
(COX1);(COX3)	1	22	65	22	66	19	2494	100	68	100
(COX1);(COX4)	1	15	56	17	57	81	1329	100	70	88
(COX1);(COX5B)	1	15	55	17	57	86	1239	100	65	88
(COX1);(COX6A)	1	14	54	17	59	30	358	100	61	82
(COX1);(COX7a)	1	16	56	17	59	25	257	100	68	94
(COX1);(COX7B)	1	15	55	15	57	82	331	100	69	100
(COX1);(COX7C)	1	16	56	17	59	30	1700	100	62	94
(COX1);(COX8)	1	15	55	15	57	42	1043	100	67	100
(COX2_TM)_(COX2);(COX4)	1	13	54	17	57	72	860	100	70	76
(COX2_TM)_(COX2);(COX5A)	1	16	56	17	59	36	276	100	64	94
(COX2_TM)_(COX2);(COX6B)	1	17	58	17	59	41	957	100	62	100
(COX2_TM)_(COX2);(COX6C)	1	16	57	17	59	41	1457	100	68	94
(COX3);(COX5B)	1	15	55	17	57	86	889	100	65	88
(COX3);(COX6A)	1	17	57	17	59	6	1606	100	58	100
(COX3);(COX6B)	1	17	58	17	59	43	245	100	64	100
(COX3);(COX7a)	1	16	56	17	59	25	1302	100	68	94
(COX4);(COX5A)	1	15	55	17	57	81	1257	100	67	88
(COX4);(COX6C)	1	13	54	17	57	74	399	100	70	76
(COX4);(COX7B)	1	15	55	15	57	81	1436	100	69	100
(COX4);(COX8)	1	15	55	15	57	42	323	100	67	100
(COX5A);(COX5B)	1	12	52	17	56	86	165	100	67	71
(COX5A);(COX6C)	1	15	55	17	57	73	607	100	65	88
(COX6A);(COX6B)	1	14	54	17	59	30	207	100	57	82
(COX7C);(COX8)	1	15	55	15	57	42	707	100	65	100
(CP12);(Gp_dh_N)_(Gp_dh_C)	1	6	7	7	10	38	695	86	71	86
(CP12);(Gp_dh_N)_(Gp_dh_C)	2	5	6	7	10	38	274	83	83	71
(Cpn10);(Cpn60_TCP1)	1	11	17	12	18	34	412	100	88	92
(CRCB);(fn3)	1	5	12	5	12	36	381	75	100	100
(Cullin)_(Cullin_Nedd8);(zf-rbx1)	1	7	7	7	7	10	1959	100	100	100
(F-box-like);(Skp1_POZ)_(Skp1)	1	6	7	6	7	21	1028	100	57	100
(CybS);(Fer2_3)_(Fer4_17)	1	6	41	6	42	37	735	100	100	100
(CybS);(Sdh_cyt)	1	6	41	6	42	27	1519	100	100	100
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_17)	1	8	51	8	52	10	2566	100	100	100
(Fer2_3)_(Fer4_17);(Sdh_cyt)	1	8	51	8	52	19	1596	100	100	100
(Cys_knot);(Hormone_6)	1	5	7	5	7	10	2132	100	100	100
(Cystatin);(Peptidase_C1)	1	6	7	6	7	11	894	100	100	100
(CytoC_RC);(Photo_RC)	1	13	34	13	37	21	1671	100	94	100
(CytoC_RC);(Photo_RC)	2	13	34	13	37	21	2540	100	97	100
(CytoC_RC);(PRCH)_(PRC)	1	9	29	12	36	45	308	100	100	75
(LHC);(Photo_RC)	1	6	7	6	7	30	635	100	86	100
(LHC);(Photo_RC)	2	6	7	6	7	39	529	100	86	100
(LHC);(Photo_RC)	3	6	7	6	7	39	278	100	86	100
(LHC);(Photo_RC)	4	6	7	6	7	39	315	100	86	100
(LHC);(Photo_RC)	5	5	6	6	7	39	377	100	83	83
(LHC);(PRCH)_(PRC)	1	5	6	6	7	39	316	100	83	83
(Photo_RC);(PRCH)_(PRC)	1	23	131	23	137	38	1618	100	97	100
(Photo_RC);(PRCH)_(PRC)	2	23	131	23	137	38	2677	100	98	100
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)	1	18	47	18	51	16	766	100	57	100
(Cytochrom_B559);(Photo_RC)	1	18	46	18	51	3	471	100	61	100
(Cytochrom_B559);(PsbJ)	1	15	45	15	48	6	380	100	44	100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	1	16	45	18	50	10	316	100	58	89
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	2	16	38	18	50	63	1330	100	50	89
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)	1	15	45	15	48	10	376	100	40	100
(Cytochrom_C550);(Photo_RC)	1	13	42	14	46	54	572	100	69	93
(Cytochrom_C550);(Photo_RC)	2	8	33	14	46	31	206	100	70	57
(Cytochrom_C550);(PsbU)	1	12	41	12	45	35	644	100	51	100
(Cytochrom_C550);(PSII)	1	14	41	14	47	54	915	100	68	100
(MSP);(Photo_RC)	1	16	44	16	49	10	707	100	41	100
(MSP);(Photo_RC)	2	15	44	16	49	31	676	100	45	94
(MSP);(PsbU)	1	12	40	12	45	35	521	100	42	100
(MSP);(PSII)	1	16	43	16	49	43	1307	100	47	100
(MSP);(PSII)	2	14	43	16	49	43	769	100	42	88
(MSP);(PSII)	3	13	42	16	49	45	394	74	10	81
(Photo_RC);(PsbH)	1	16	45	16	49	31	271	100	53	100
(Photo_RC);(PsbI)	1	16	45	16	49	10	864	100	38	100
(Photo_RC);(PsbL)	1	16	45	16	49	10	399	100	47	100
(Photo_RC);(PsbL)	2	16	45	16	49	10	257	100	49	100
(Photo_RC);(PsbT)	1	16	45	16	49	42	518	100	49	100
(Photo_RC);(PsbT)	2	12	33	16	49	42	220	100	33	75
(Photo_RC);(PsbX)	1	15	43	15	48	7	602	100	51	100
(Photo_RC);(PSII)	1	18	47	18	51	10	2947	100	64	100
(Photo_RC);(PSII)	2	17	47	18	51	17	814	100	68	94
(PsbH);(PsbX)	1	14	43	15	47	31	299	100	47	93
(PsbH);(PSII)	1	16	47	16	49	61	1879	100	60	100
(PsbI);(PSII)	1	16	43	16	49	61	446	100	40	100
(PsbK);(PSII)	1	17	45	17	50	17	799	100	53	100
(PsbK);(PSII_Ycf12)	1	10	38	10	43	4	490	100	47	100
(PsbK);(Ycf9)	1	16	46	16	49	12	274	100	39	100
(PsbL);(PsbM)	1	15	46	15	48	10	811	100	61	100
(PsbL);(PsbT)	1	16	47	16	49	10	599	100	64	100
(PsbL);(PSII)	1	16	47	16	49	10	596	100	51	100
(PsbM);(PsbT)	1	15	45	15	48	33	218	100	24	100
(PsbU);(PSII)	1	12	38	12	45	35	438	100	47	100
(PsbU);(PSII)	2	12	41	12	45	35	449	100	51	100
(PSII);(Ycf9)	1	16	43	16	49	10	441	100	42	100
(PSII_Ycf12);(Ycf9)	1	10	38	10	43	10	402	100	42	100
(Cytochrom_C);(peroxidase)	1	13	19	14	23	37	558	100	32	93
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)	1	34	71	34	81	10	1604	100	83	100
(Cytochrom_C1);(UCR_14kD)	1	30	63	30	73	34	376	100	81	100
(Cytochrom_C1);(UCR_hinge)	1	30	63	30	73	3	1083	100	81	100
(Cytochrom_C1);(UCR_TM)_(Rieske)	1	22	50	22	65	4	747	100	80	100
(Cytochrom_C1);(UCR_UQCRX_QCR9)	1	27	60	30	73	31	842	100	85	90
(Cytochrom_C1);(UcrQ)	1	30	64	30	73	21	726	100	80	100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)	1	30	63	30	73	26	380	100	81	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)	1	30	64	30	73	34	1218	100	80	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	1	22	51	22	65	49	486	100	78	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	2	19	40	22	65	49	814	90	75	86
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)	1	30	63	30	73	21	1004	100	81	100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)	1	26	46	30	73	21	381	87	74	87
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)	1	22	51	22	65	26	877	100	78	100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)	1	27	52	30	73	26	231	100	83	90
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)	1	30	64	30	73	21	826	100	80	100
(UCR_14kD);(UcrQ)	1	27	60	30	73	21	459	100	85	90
(UCR_hinge);(UcrQ)	1	20	41	30	67	21	271	100	88	67
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)	1	22	51	22	65	31	639	100	78	100
(UCR_TM)_(Rieske);(UcrQ)	1	22	51	22	65	12	558	100	78	100
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	1	19	46	19	56	0	1308	100	78	100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_6-4kD)	1	11	23	14	34	82	321	100	74	79
(UCR_14kD);(UCR_6-4kD)	1	5	5	14	29	86	192	100	0	36
(UCR_6-4kD);(UCR_UQCRX_QCR9)	1	14	27	14	34	79	496	100	63	100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	1	364	624	383	651	0	419	94	15	95
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	1	368	635	383	648	0	772	94	15	96
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	58	58	384	129	4	141	98	14	15
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S5)_(Ribosomal_S5_C)	2	11	11	384	129	4	164	100	36	3
(KOW)_(ribosomal_L24);(Ribosomal_L23)	1	10	10	279	12	80	727	90	30	4
(Ribosom_S12_S23);(Ribosomal_S17)	1	237	476	267	509	3	219	100	22	89
(Ribosomal_L13);(Ribosomal_L20)	1	269	433	280	439	0	522	100	17	96
(Ribosomal_L13);(Ribosomal_L21p)	1	32	129	279	159	39	102	100	9	11
(Ribosomal_L13);(Ribosomal_L21p)	2	5	5	279	159	21	208	100	0	2
(Ribosomal_L13);(Ribosomal_L22)	1	14	14	866	19	21	547	86	21	2
(Ribosomal_L13);(Ribosomal_L3)	1	200	293	862	418	3	294	87	10	23
(Ribosomal_L13);(Ribosomal_L3)	2	5	5	862	418	32	787	80	40	1
(Ribosomal_L13);(Ribosomal_L6)_(Ribosomal_L6)	1	11	71	410	71	32	265	100	1	3
(Ribosomal_L13);(Ribosomal_S18)	1	9	9	231	9	85	2383	89	22	4
(Ribosomal_L14);(Ribosomal_L19)	1	270	436	277	440	0	801	100	15	97
(Ribosomal_L14);(Ribosomal_L3)	1	278	487	864	515	0	242	92	11	32
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)	1	96	234	100	239	5	1094	100	10	96
(Ribosomal_L16);(Ribosomal_L27)	1	108	212	273	261	7	189	100	14	40
(Ribosomal_L16);(Ribosomal_L30)	1	10	10	282	10	88	422	90	30	4
(Ribosomal_L17);(Ribosomal_L3)	1	95	130	274	288	26	112	100	24	35
(Ribosomal_L17);(Ribosomal_L3)	2	33	107	274	288	27	119	99	7	12
(Ribosomal_L17);(Ribosomal_L32p)	1	260	426	268	429	0	349	100	16	97
(Ribosomal_L18p);(Ribosomal_L27)	1	12	13	266	28	0	233	100	8	5
(Ribosomal_L18p);(Ribosomal_L27)	2	10	10	266	28	87	1087	90	30	4
(Ribosomal_L18p);(Ribosomal_L5)_(Ribosomal_L5_C)	1	7	7	256	9	71	216	100	14	3
(Ribosomal_L19);(Ribosomal_L3)	1	268	434	278	439	0	712	100	16	96
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)	1	51	51	208	100	40	206	100	45	25
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_S6)	1	14	14	227	39	17	360	86	7	6
(Ribosomal_L20);(Ribosomal_L21p)	1	270	437	275	440	0	969	100	15	98
(Ribosomal_L20);(Ribosomal_L22)	1	10	10	280	10	86	270	90	30	4
(Ribosomal_L21p);(Ribosomal_L27A)	1	94	128	279	241	40	163	100	21	34
(Ribosomal_L21p);(Ribosomal_S18)	1	9	9	225	9	77	490	89	22	4
(Ribosomal_L22);(Ribosomal_L32p)	1	269	436	280	439	0	468	100	17	96
(Ribosomal_L23);(Ribosomal_L29)	1	269	493	284	499	0	491	100	14	95
(Ribosomal_L27);(Ribosomal_S10)	1	9	9	225	9	76	410	89	22	4
(Ribosomal_L27A);(Ribosomal_L35p)	1	264	427	271	433	0	781	100	16	97
(Ribosomal_L27A);(Ribosomal_L4)	1	271	429	296	442	0	464	100	17	92
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	1	163	293	188	315	0	262	100	14	87
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	1	152	268	179	283	0	960	100	14	85
(Ribosomal_L31);(Ribosomal_S13)	1	98	207	168	238	0	401	100	16	58
(Ribosomal_L31);(Ribosomal_S13)	2	7	7	168	238	49	449	100	0	4
(Ribosomal_L31);(Ribosomal_S19)	1	89	178	166	230	9	436	99	20	54
(Ribosomal_L31);(Ribosomal_S19)	2	21	23	166	230	5	388	100	0	13
(Ribosomal_L33);(Ribosomal_L35p)	1	13	17	264	34	31	196	100	0	5
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	1	176	275	318	380	1	289	98	12	55
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	2	32	52	318	380	6	334	96	2	10
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)	1	29	43	317	43	56	265	40	5	9
(Ribosomal_S10);(Ribosomal_S14)	1	384	648	398	664	0	789	94	17	96
(Ribosomal_S10);(Ribosomal_S9)	1	63	161	398	317	5	187	98	12	16
(Ribosomal_S11);(Ribosomal_S18)	1	133	369	271	399	0	296	100	7	49
(Ribosomal_S11);(Ribosomal_S7)	1	219	449	410	498	2	240	99	19	53
(Ribosomal_S13);(Ribosomal_S19)	1	380	649	392	661	0	439	94	11	97
(Ribosomal_S14);(Ribosomal_S19)	1	129	156	388	167	10	316	99	20	33
(Ribosomal_S15);(Ribosomal_S17)	1	9	9	271	12	71	367	89	0	3
(Ribosomal_S15);(Ribosomal_S6)	1	15	15	276	15	6	446	87	0	5
(Ribosomal_S16);(Ribosomal_S18)	1	10	10	270	10	84	580	90	0	4
(Ribosomal_S18);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	271	10	82	596	90	0	4
(Ribosomal_S18);(Ribosomal_S6)	1	258	506	272	526	0	925	100	12	95
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)	1	22	22	279	36	2	417	91	9	8
(Ribosomal_S2);(Ribosomal_S8)	1	93	313	269	331	41	260	100	8	35
(Ribosomal_S2);(Ribosomal_S9)	1	13	13	279	13	24	1170	85	0	5
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	1	294	557	338	594	0	331	94	19	87
(Ribosomal_S4)_(S4);(Ribosomal_S6)	1	31	80	259	199	28	366	5	0	12
(Ribosomal_S4)_(S4);(Ribosomal_S6)	2	10	28	259	199	10	260	4	0	4
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	1	386	649	400	666	0	571	94	16	96
(Ribosomal_S7);(Ribosomal_S9)	1	349	585	408	622	0	460	93	13	86
(DCP1);(DCP2)_(NUDIX)	1	7	8	7	8	19	1047	100	75	100
(Dehydratase_LU);(Dehydratase_SU)	1	6	13	6	13	55	2718	100	77	100
(Dioxygenase_C);(PCDO_beta_N)_(Dioxygenase_C)	1	6	52	6	52	53	3609	100	100	100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Gar1)	1	5	5	5	5	24	855	100	100	100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Nop10p)	1	10	17	10	17	10	1351	100	100	100
(DNA_RNApol_7kD);(RNA_pol_A_bac)	1	111	205	112	228	0	582	100	52	99
(DNA_RNApol_7kD);(RNA_pol_N)	1	37	38	119	120	40	176	100	45	31
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	91	189	92	208	16	997	99	53	99
(HTH_9)_(RNA_pol_Rpc82)_(TFIIE_alpha);(RNA_pol_3_Rpc31)	1	11	11	11	11	66	1483	100	82	100
(RNA_pol_3_Rpc31);(RNA_pol_Rpc34)	1	9	9	11	11	66	537	100	78	82
(RNA_pol_A_bac);(RNA_pol_L_2)	1	111	207	112	228	4	2026	100	61	99
(RNA_pol_A_bac);(RNA_pol_N)	1	111	205	112	228	3	1113	100	69	99
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	84	177	85	200	21	1695	99	71	99
(RNA_pol_A_bac);(RNA_pol_Rpb8)	2	5	5	112	149	39	207	100	80	4
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	91	187	92	208	22	433	99	63	99
(RNA_pol_L_2);(RNA_pol_Rpb8)	1	31	117	112	160	57	194	99	55	28
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	84	180	85	200	26	1310	99	58	99
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	91	189	92	208	37	1536	99	71	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	117	164	118	165	10	1628	99	62	99
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)	1	28	67	84	99	45	275	99	43	33
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	13	13	13	13	30	1694	100	85	100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	56	146	70	174	49	357	99	63	80
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	69	166	70	185	35	960	99	49	99
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	70	166	70	186	44	1545	99	69	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	70	167	70	186	54	9191	99	60	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)	1	24	59	62	99	51	217	98	42	39
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)	1	70	167	70	186	4	2107	99	69	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	69	164	70	186	4	1902	99	68	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	69	166	70	186	29	1482	99	68	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	60	105	62	119	5	596	99	47	97
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(SHS2_Rpb7-N)_(S1)	1	20	21	69	91	17	250	100	38	29
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)	1	72	117	73	131	2	2058	99	48	99
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)	1	67	110	69	127	4	440	98	44	97
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	1	10	39	10	39	42	1390	100	67	100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	2	9	38	10	39	42	609	100	66	90
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	1	10	33	10	33	16	4540	100	94	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	2	10	33	10	33	51	1304	100	94	100
(Fer4_NifH);(Oxidored_nitro)	1	6	8	7	10	10	428	100	75	86
(Fer4_NifH);(Oxidored_nitro)	2	5	8	7	10	10	517	100	88	71
(DUF5089);(Synaptobrevin)	1	10	15	13	18	10	1147	100	87	77
(DUF5089);(Synaptobrevin)	2	9	12	13	18	10	315	100	92	69
(DUF5089);(Syntaxin)_(SNARE)	1	14	18	14	19	7	1478	100	94	100
(DUF5089);(Syntaxin)_(SNARE)	2	10	14	14	19	19	339	100	86	71
(Synaptobrevin);(Syntaxin)_(SNARE)	1	25	29	25	30	4	1398	100	72	100
(E3_binding);(Pyr_redox_2)_(Pyr_redox_dim)	1	6	6	6	6	22	454	100	17	100
(Ecotin);(Trypsin)	1	12	17	12	17	27	952	100	100	100
(Ecotin);(Trypsin)	2	10	15	12	17	27	512	93	100	83
(Gla)_(EGF)_(FXa_inhibition);(Trypsin)	1	9	74	11	85	38	901	95	97	82
(ECR1_N)_(EXOSC1);(RNase_PH)_(RNase_PH_C)	1	11	13	15	17	14	762	100	85	73
(ECR1_N)_(EXOSC1);(RNase_PH)_(RNase_PH_C)	3	5	7	15	17	23	950	100	57	33
(EF-hand_7);(Lectin_leg-like)	1	6	9	6	9	82	763	100	100	100
(EF-hand_7)_(EF-hand_7);(Myosin_head)_(IQ)	1	6	6	6	6	45	1145	100	50	100
(EGF);(Recep_L_domain)_(Furin-like)_(Recep_L_domain)_(GF_rec ep_IV)	1	8	9	8	9	29	1430	100	100	100
(EGF)_(FXa_inhibition);(Trypsin)	1	12	26	12	26	38	876	100	100	100
(eIF_4EBP);(IF4E)	1	9	12	12	20	0	1000	100	100	75
(eIF-1a);(Ribosom_S12_S23)	1	12	12	12	12	10	429	92	25	100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)	1	119	133	127	135	8	493	71	6	94
(KH_2)_(Ribosomal_S3_C);(S10_plectin)	1	119	133	119	133	0	881	71	6	100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	7	7	11	10	52	379	86	29	64
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)	1	131	145	138	145	2	460	72	9	95
(Ribosom_S12_S23);(Ribosomal_S30)	1	105	119	111	119	10	458	68	8	95
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)	1	43	43	134	50	32	361	79	0	32
(Ribosomal_L7Ae);(S10_plectin)	1	25	25	119	30	3	292	72	0	21
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)	1	9	9	9	9	31	568	78	11	100
(Ribosomal_S11);(Ribosomal_S26e)	1	117	131	117	131	10	1108	70	7	100
(Ribosomal_S11);(Ribosomal_S28e)	1	50	50	136	61	4	291	94	4	37
(Ribosomal_S11);(Ribosomal_S3Ae)	1	130	144	133	146	5	861	74	8	98
(Ribosomal_S13);(Ribosomal_S19e)	1	127	141	132	141	2	433	72	8	96
(Ribosomal_S13);(Ribosomal_S25)	1	122	136	126	138	0	462	71	7	97
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)	1	22	22	137	23	35	244	77	9	16
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)	1	133	147	133	147	0	707	73	7	100
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)	1	60	60	130	70	27	199	95	8	46
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)	1	114	128	137	130	10	194	70	8	83
(Ribosomal_S14);(S10_plectin)	1	113	127	119	129	0	290	70	6	95
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)	1	133	147	135	147	5	716	73	9	99
(Ribosomal_S17e);(Ribosomal_S3Ae)	1	27	27	128	29	4	220	100	7	21
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	11	11	11	11	10	529	82	18	100
(Ribosomal_S19e);(Ribosomal_S9)	1	112	125	132	129	28	228	71	8	85
(Ribosomal_S21e);(Ribosomal_S27e)	1	95	109	126	111	10	360	68	8	75
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)	1	124	138	126	138	2	1315	72	8	98
(Ribosomal_S21e);(Ribosomal_S8)	1	120	134	126	134	0	263	72	8	95
(Ribosomal_S24e);(Ribosomal_S4)_(S4)	1	68	82	80	83	8	229	61	7	85
(Ribosomal_S25);(Ribosomal_S7)	1	125	139	126	139	4	597	71	7	99
(Ribosomal_S26e);(Ribosomal_S28e)	1	9	9	116	15	44	227	56	11	8
(Ribosomal_S26e);(Ribosomal_S3Ae)	1	114	128	117	131	10	256	71	6	97
(Ribosomal_S27e);(Ribosomal_S7e)	1	90	104	127	110	29	226	69	9	71
(Ribosomal_S27e);(Ribosomal_S8)	1	129	143	133	143	10	482	73	8	97
(Ribosomal_S28e);(Ribosomal_S7)	1	135	149	137	149	0	1125	73	7	99
(Ribosomal_S30);(Ribosomal_S4)_(S4)	1	70	84	72	84	0	507	61	8	97
(Ribosomal_S7e);(Ribosomal_S8)	1	130	144	131	144	2	465	73	8	99
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	11	11	11	11	10	283	82	18	100
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	1	110	124	115	124	4	1033	70	7	96
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)	1	112	126	115	126	0	1515	71	8	97
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	112	126	117	128	6	534	71	8	96
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	1	131	145	133	145	6	533	74	8	98
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )	1	120	134	128	134	5	310	72	8	94
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)	1	8	8	8	8	11	261	88	25	100
(Enterotoxin_a);(Enterotoxin_b)	1	5	15	5	15	61	389	100	67	100
(Ephrin);(Ephrin_lbd)	1	10	10	10	10	27	1100	100	100	100
(EpoR_lig-bind)_(fn3);(Hormone_1)	1	7	17	7	17	20	1189	100	100	100
(eRF1_1)_(eRF1_2)_(eRF1_3);(GTP_EFTU)_(GTP_EFTU_D2)_(GTP_EFT U_D3)	1	5	5	5	5	13	1556	100	60	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	1	15	32	15	32	10	1737	100	88	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	2	13	30	15	32	27	841	100	97	87
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_8)	1	8	18	8	18	25	2688	100	94	100
(PPTA)_(PPTA)_(PPTA)_(PPTA)_(PPTA);(Prenyltrans)_(Prenyltran s)_(Prenyltrans)_(Prenyltrans)_(Prenyltrans)	1	6	79	6	79	19	3063	94	100	100
(FGF);(Ig_3)_(I-set)	1	9	11	9	11	21	1425	100	100	100
(Fibrillarin);(Nop)	1	7	9	7	9	6	1575	100	78	100
(Nop);(Ribosomal_L7Ae)	1	8	10	8	10	26	604	100	80	100
(Filo_glycop);(TLV_coat)	1	15	29	15	29	15	2430	97	52	100
(Filo_glycop);(TLV_coat)	2	15	29	15	29	23	469	79	48	100
(Filo_glycop);(TLV_coat)	3	15	29	15	29	23	419	79	48	100
(Fimbrial);(PapD_N)_(PapD_C)	1	14	16	14	16	10	1636	100	88	100
(PapC_N)_(Usher)_(PapC_C);(PapD_N)_(PapD_C)	1	5	5	5	5	26	1039	100	40	100
(FKBP_C);(FRB_dom)	1	8	10	8	10	40	352	100	20	100
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	1	24	24	26	25	12	884	100	8	92
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	2	12	12	26	25	14	866	100	8	46
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_propep)_(Flavi_M)	1	5	6	5	6	63	366	100	0	100
(Flu_PA);(Flu_PB1)	1	16	19	16	19	3	7786	100	74	100
(Flu_PA);(Flu_PB2)	1	14	17	14	17	24	2103	100	71	100
(Flu_PB1);(Flu_PB2)	1	14	18	14	18	10	5688	100	78	100
(Inhibitor_I9);(Peptidase_S8)	1	8	12	10	13	14	1201	100	100	80
(F-protein);(SH3_1)	1	5	7	5	7	13	642	100	100	100
(FXa_inhibition);(Trypsin)	1	18	154	18	176	35	906	96	97	100
(Kunitz_BPTI);(Trypsin)	1	40	95	42	96	0	670	100	94	95
(Serpin);(Trypsin)	1	10	10	14	15	23	1094	100	100	71
(G-alpha);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	6	7	7	7	41	1247	100	100	86
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	39	57	39	57	10	2193	100	67	100
(G-alpha);(RGS)	1	9	9	9	9	33	893	100	11	100
(Gamma-thionin);(GP120)	1	5	6	6	10	10	707	100	17	83
(GP120);(V-set)_(C1-set)	1	45	67	156	221	10	280	99	64	29
(GP120);(V-set)_(C1-set)	2	30	41	156	221	4	850	98	51	19
(GP120);(V-set)_(C1-set)	3	21	44	156	221	3	315	93	16	13
(GP120);(V-set)_(C1-set)	4	20	22	156	221	0	627	100	41	13
(GP120);(V-set)_(C1-set)	5	14	33	156	221	56	296	94	15	9
(GP120);(V-set)_(C1-set)	6	12	26	156	221	49	557	100	27	8
(GP120);(V-set)_(C1-set)	7	9	12	156	221	67	283	0	0	6
(GP120);(V-set)_(C1-set)	8	6	21	156	221	72	308	95	38	4
(GDNF)_(GDNF);(TGF_beta)	1	5	5	5	5	23	776	100	100	100
(Glyco_transf_7N)_(Glyco_transf_7C);(Lys)	1	5	13	5	13	68	610	100	23	100
(GP120);(GP41)	1	40	65	40	67	16	2426	98	40	100
(GP120);(GP41)	2	18	31	40	67	16	216	81	16	45
(GP41);(V-set)_(C1-set)	1	31	50	65	89	0	444	98	42	48
(GP41);(V-set)_(C1-set)	2	8	10	65	89	79	292	100	20	12
(GP41);(V-set)_(C1-set)	3	5	6	65	89	0	250	67	33	8
(GP120);(ig)_(C2-set)	1	9	10	9	10	56	1001	100	40	100
(GP120);(V-set)	1	5	5	11	15	43	1084	100	0	45
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosom_ S12_S23)	1	8	11	12	12	10	297	100	0	67
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	1	39	39	102	42	3	261	97	23	38
(Ribosomal_L10);(Ribosomal_L16)	1	10	10	109	10	85	1212	90	30	9
(Ribosomal_L10);(Ribosomal_S18)	1	9	9	91	9	85	240	89	22	10
(Ribosomal_L16);(Ribosomal_L25p)	1	133	159	149	169	24	385	100	20	89
(Ribosomal_S11);(Ribosomal_S21)	1	136	160	149	176	0	1060	99	19	91
(Ribosomal_S18);(Ribosomal_S21)	1	107	131	149	156	0	257	98	19	72
(Ribosomal_S2);(Ribosomal_S21)	2	7	7	149	16	75	242	86	0	5
(Ribosomal_S21);(Ribosomal_S6)	1	9	9	149	12	85	222	89	0	6
(Ribosomal_S21);(Ribosomal_S9)	1	7	7	149	7	78	236	86	0	5
(Colicin_Pyocin);(HNH)	1	10	19	10	20	58	769	100	63	100
(LON_substr_bdg)_(Yippee-Mis18);(MMS1_N)_(CPSF_A)	1	11	14	11	14	82	2369	100	50	100
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)	1	11	11	18	15	19	1659	100	82	61
(HECT);(ubiquitin)	1	6	6	9	10	51	834	83	83	67
(Hemagglutinin);(V-set)_(C1-set)	1	10	11	87	92	10	581	100	27	11
(Hemagglutinin);(V-set)_(C1-set)	2	7	8	87	92	35	273	100	38	8
(Hemagglutinin);(V-set)_(C1-set)	3	7	9	87	92	6	501	89	22	8
(Hemagglutinin);(V-set)_(C1-set)	5	5	7	87	92	10	691	100	14	6
(Hemagglutinin);(V-set)_(C1-set)	4	6	6	87	92	38	508	100	67	7
(Hemagglutinin);(V-set)_(C1-set)	6	5	5	87	92	54	535	60	60	6
(Histone);(PHD)_(PHD)	1	5	9	8	14	50	968	100	100	62
(Hormone_recep);(SRC-1)	1	13	21	52	260	10	666	100	95	25
(Hpt);(Response_reg)	1	5	7	6	8	10	730	100	100	83
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)_(W2)	1	6	7	6	7	33	1184	100	29	100
(IGFBP);(Insulin)	1	5	5	5	5	58	820	100	100	100
(Inhibitor_I42);(Peptidase_C1)	1	5	5	6	6	26	1074	100	100	83
(Ion_trans_2);(V-set)_(C1-set)	1	6	54	7	63	0	470	96	46	86
(Ion_trans_2);(V-set)_(C1-set)	2	6	54	7	63	88	404	96	46	86
(Rad60-SLD);(UQ_con)	1	7	7	12	13	14	568	71	14	58
(Rad60-SLD);(UQ_con)	2	5	6	12	13	47	586	100	83	42
(RanGAP1_C);(UQ_con)	1	6	11	6	11	81	569	100	9	100
(JAB);(JAB)_(MitMem_reg)	1	31	33	31	33	11	3073	100	52	100
(Kazal_1);(Trypsin)	1	9	35	9	35	10	639	100	97	100
(PCRF)_(RF-1);(Ribosomal_L11_N)_(Ribosomal_L11)	1	6	7	19	10	42	292	100	29	32
(Ribosom_S12_S23);(RRF)	1	6	8	10	8	10	453	100	0	60
(Ribosomal_L7Ae);(Ribosomal_S27)	1	47	61	52	66	3	517	61	8	90
(Ribosomal_S4)_(S4);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_ S4_C)	1	64	78	76	78	10	388	59	9	84
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)	1	48	62	57	62	10	475	50	6	84
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	53	67	56	67	22	535	52	7	95
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)	1	52	66	58	68	36	314	52	6	90
(Kinesin);(Tubulin)_(Tubulin_C)	1	20	20	43	43	29	651	100	30	47
(Kinesin);(Tubulin)_(Tubulin_C)	2	16	16	43	43	29	636	100	38	37
(Kunitz_legume);(Trypsin)	1	7	10	8	11	30	995	100	70	88
(Ran_BP1);(Ras)	1	12	44	12	44	22	2101	100	86	100
(Lys);(tRNA_anti-codon)	1	5	5	5	5	86	864	100	0	100
(Lys);(V-set)	1	5	23	25	58	75	526	100	22	20
(Lys);(V-set)	2	5	23	25	58	77	382	100	22	20
(Lys);(V-set)_(C1-set)	1	5	14	14	25	84	518	100	14	36
(Lys);(V-set)_(C1-set)	2	5	14	14	25	84	391	100	14	36
(MCR_alpha_N)_(MCR_alpha);(MCR_beta_N)_(MCR_beta)	1	6	22	7	23	47	2201	100	100	86
(MCR_alpha_N)_(MCR_alpha);(MCR_beta_N)_(MCR_beta)	2	5	19	7	23	47	1213	100	100	71
(MCR_alpha_N)_(MCR_alpha);(MCR_gamma)	1	5	18	7	23	47	2441	100	100	71
(MCR_beta_N)_(MCR_beta);(MCR_gamma)	1	7	23	7	23	47	2596	100	100	100
(MeMO_Hyd_G);(Phenol_Hydrox)	1	5	29	5	33	51	1392	100	100	100
(MeMO_Hyd_G);(Phenol_Hydrox)_(YHS)	1	5	29	5	33	10	2150	100	100	100
(MmoB_DmpM);(Phenol_Hydrox)_(YHS)	1	5	18	5	19	17	1822	100	94	100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)	1	15	69	15	75	10	4697	100	100	100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)	2	7	32	15	75	10	424	100	100	47
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	1	128	178	128	178	10	2628	100	90	100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	2	19	22	128	178	21	382	14	9	15
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	3	9	10	128	178	23	324	0	0	7
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	5	6	7	128	178	53	294	14	14	5
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	6	5	9	128	178	56	264	0	0	4
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	4	6	11	128	178	54	300	18	9	5
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)	1	30	40	39	49	10	320	95	22	77
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)	1	18	26	39	43	50	265	92	19	46
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)	2	5	7	39	43	61	453	100	57	13
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)	1	28	32	39	45	20	370	94	22	72
(Phenol_Hydrox)_(YHS);(TmoB)	1	8	37	8	39	52	1323	100	100	100
(MoaE);(ThiS)	1	6	7	9	10	19	980	100	100	67
(Neur_chan_LBD);(Toxin_TOLIP)	1	5	7	6	15	24	711	100	71	83
(NHase_alpha);(NHase_beta)	1	8	46	9	56	16	3087	100	100	89
(NHase_alpha);(NHase_beta)	2	5	31	9	56	29	296	16	58	56
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	1	11	40	23	105	19	3507	100	100	48
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	2	9	33	23	105	11	820	94	64	39
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	3	8	39	23	105	11	3883	100	64	35
(OTCace_N)_(OTCace);(PyrI)_(PyrI_C)	1	8	60	9	84	45	672	100	98	89
(OTU);(ubiquitin)	1	12	14	13	14	10	1021	100	93	92
(Pacifastin_I);(Trypsin)	1	7	7	7	7	10	903	100	100	100
(PALP);(Trp_syntA)	1	7	67	12	100	24	1321	100	88	58
(PAS_11);(PAS_3)	1	6	16	7	17	74	947	75	62	86
(PAS_11);(PAS_3)	2	5	15	7	17	75	361	0	0	71
(PBD);(Ras)	1	6	7	6	8	16	1127	100	71	100
(Peptidase_C12);(ubiquitin)	1	6	8	6	8	19	1106	100	88	100
(Peptidase_C48);(Rad60-SLD)	1	11	15	11	15	14	1028	100	80	100
(Peptidase_M10);(TIMP)	1	8	9	8	9	39	1075	100	89	100
(Peptidase_S8);(potato_inhibit)	1	11	29	11	29	32	835	100	100	100
(Pico_P1A)_(Rhv);(Rhv)	1	10	15	14	19	39	1714	93	7	71
(Pico_P1A)_(Rhv);(Rhv)	2	6	7	14	19	72	2136	86	0	43
(PKI);(Pkinase)	1	17	180	17	249	77	954	96	77	100
(PKI);(Pkinase)	2	12	181	17	249	0	389	0	0	71
(Pkinase);(Pkinase_Tyr)	1	5	5	8	9	26	798	80	0	62
(Plexin_cytopl);(Ras)	1	5	5	6	6	40	676	100	100	83
(Plug_translocon)_(SecY);(Sec61_beta)	1	10	13	11	14	10	1134	85	85	91
(Plug_translocon)_(SecY);(SecE)	1	12	15	12	15	17	1587	87	87	100
(Polyketide_cyc2);(PP2C)	1	12	29	16	35	10	869	97	93	75
(Ras);(RasGEF_N)_(RasGEF)	1	5	43	7	50	16	1632	100	47	71
(Ras);(RBD-FIP)	1	7	8	8	10	32	523	100	75	88
(Ras);(Rho_GDI)	1	6	6	7	7	53	1261	100	100	86
(Ras);(RhoGAP)	1	7	7	7	7	19	1099	100	100	100
(Ras);(RhoGEF)_(PH)	1	6	7	6	7	22	1505	100	100	100
(Rhv);(VP4_2)	1	17	27	22	33	13	584	100	70	77
(Rhv);(VP4_2)	2	13	20	22	33	65	240	100	65	59
(Rhv);(VP4_2)	3	9	11	22	33	16	677	91	36	41
(Rhv);(Rhv)_(Rhv)	1	8	16	13	21	50	960	100	69	62
(Rhv);(Rhv)_(Rhv)	2	6	6	13	21	67	2897	100	83	46
(Rhv);(Rhv)_(Rhv)	3	6	6	13	21	76	1270	100	83	46
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)	1	129	143	135	143	2	761	73	10	96
(Ribosomal_L37ae);(Ribosomal_L7Ae)	1	12	12	139	15	58	259	67	0	9
(Ricin_B_lectin)_(Ricin_B_lectin);(RIP)	1	10	39	10	39	28	1546	100	95	100
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	1	13	50	13	50	20	1775	100	96	100
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	2	8	16	13	50	24	312	100	100	62
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)	1	44	75	49	84	11	998	100	59	90
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	23	60	23	60	80	1937	100	88	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	2	21	57	23	60	80	255	100	93	91
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (RNA_pol_Rpb6)	1	13	28	22	53	84	161	100	96	59
(RnaseA);(V-set)	1	7	12	7	12	89	581	100	75	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	1	23	50	23	51	9	1753	100	90	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	2	22	48	23	51	9	664	98	85	96
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	3	7	11	23	51	47	267	100	82	30
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)	1	19	171	22	226	12	2615	100	85	86
(Sec1);(Vps16_C)	1	5	5	5	5	28	2079	100	80	100
(Squash);(Trypsin)	1	7	10	7	10	33	812	100	100	100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)	1	5	9	5	9	43	626	100	44	100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)_(C1-set)	1	7	9	14	12	19	689	100	44	50
(Stathmin);(Tubulin)_(Tubulin_C)	1	13	115	13	123	56	656	100	79	100
(Stathmin);(Tubulin)_(Tubulin_C)	2	13	114	13	123	56	1538	100	78	100
(Stathmin);(Tubulin)_(Tubulin_C)	3	11	112	13	123	3	778	100	76	85
(T2SSI);(T2SSJ)	1	5	5	5	5	24	757	100	80	100
(T6SS_VipA);(VipB)	1	8	8	8	8	15	2803	100	50	100
(T6SS_VipA);(VipB)	2	5	5	8	8	26	718	100	60	62
(TBP)_(TBP);(TFIIB)_(TFIIB)	1	6	8	6	8	15	1190	100	88	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	1	6	9	6	9	19	497	100	78	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	2	6	9	6	9	19	621	100	78	100
(ubiquitin);(UCH)	1	15	18	22	32	15	1704	94	83	68
(ubiquitin);(UCH)	2	5	11	22	32	21	1830	100	100	23
(UQ_con);(zf-C3HC4_3)	1	5	5	5	5	26	496	100	20	100
(UQ_con);(zf-RING_2)	1	6	6	7	7	33	542	100	33	86
(ubiquitin);(Viral_protease)	1	5	6	9	12	10	1098	100	83	56
(MHC_II_alpha)_(C1-set);(Stap_Strp_toxin)_(Stap_Strp_tox_C)	1	8	18	12	21	31	680	100	0	67
(DUF3585);(Ras)	1	5	5	5	5	42	913	100	80	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	1	126	140	137	140	3	765	73	8	92
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)	1	125	139	136	142	1	955	73	9	92
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	113	127	133	133	3	417	72	9	85
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)	1	123	137	129	139	10	664	72	8	95
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	1	123	137	129	139	3	508	72	8	95
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	2	110	124	129	139	13	281	73	8	85
(Ribosomal_L13);(Ribosomal_L18A)	1	123	137	136	137	12	680	72	8	90
(Ribosomal_L13);(Ribosomal_L35Ae)	1	128	131	134	144	2	225	79	8	96
(Ribosomal_L13e);(Ribosomal_L15e)	1	129	143	132	143	31	501	73	8	98
(Ribosomal_L13e);(Ribosomal_L18)	1	109	123	132	125	10	229	70	7	83
(Ribosomal_L13e);(Ribosomal_L27A)	1	124	138	125	138	10	1466	72	8	99
(Ribosomal_L13e);(Ribosomal_L29)	1	129	143	130	143	2	900	73	8	99
(Ribosomal_L13e);(Ribosomal_L36e)	1	121	135	132	135	10	641	72	8	92
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	118	132	132	133	31	203	73	9	89
(Ribosomal_L14);(Ribosomal_L24e)	1	140	215	146	215	0	516	82	7	96
(Ribosomal_L15e);(Ribosomal_L29)	1	126	140	146	140	20	355	72	9	86
(Ribosomal_L15e);(Ribosomal_L36e)	1	125	139	134	139	10	529	73	9	93
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	124	138	137	139	10	267	72	9	91
(Ribosomal_L15e);(Ribosomal_L7Ae)	1	139	213	148	213	3	933	82	6	94
(Ribosomal_L16);(Ribosomal_L21e)	1	85	99	128	103	10	201	64	7	66
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	98	112	133	115	49	256	67	6	74
(Ribosomal_L18);(Ribosomal_L27A)	1	124	138	141	141	10	880	72	8	88
(Ribosomal_L18);(Ribosomal_L29e)	1	5	5	120	5	41	496	80	0	4
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)	1	121	135	137	135	10	255	72	7	88
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	130	144	137	144	10	1108	73	8	95
(Ribosomal_L18A);(Ribosomal_L21e)	1	121	135	131	135	1	893	73	8	92
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)	1	128	142	134	142	1	475	73	8	96
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	67	81	134	81	36	243	62	14	50
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)	1	121	135	132	138	21	305	72	9	92
(Ribosomal_L19e);(Ribosomal_S17_N)_(Ribosomal_S17)	1	5	5	93	10	58	271	60	0	5
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)	1	135	209	138	209	0	1227	82	5	98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)	1	118	132	140	132	4	300	72	8	84
(Ribosomal_L21e);(Ribosomal_L29e)	1	116	130	120	130	10	475	71	7	97
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	123	137	131	137	10	594	72	8	94
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	120	134	140	204	10	850	71	7	86
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	2	10	70	140	204	21	524	100	1	7
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)	1	127	141	131	142	10	215	74	9	97
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)	1	116	130	131	132	6	366	71	8	89
(Ribosomal_L24e);(Ribosomal_L3)	1	130	204	145	204	0	482	81	7	90
(Ribosomal_L24e);(Ribosomal_S6e)	1	50	64	84	68	1	815	58	3	60
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)	1	20	34	154	36	8	342	0	0	13
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)	1	127	141	140	141	10	191	72	9	91
(Ribosomal_L27A);(Ribosomal_L36e)	1	117	131	127	131	10	228	72	8	92
(Ribosomal_L29);(Ribosomal_L37e)	1	94	108	146	111	38	174	73	9	64
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	20	20	120	23	82	481	100	0	17
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)	1	123	137	136	139	37	1031	72	9	90
(Ribosomal_L34e);(Ribosomal_L7Ae)	1	124	138	132	140	10	261	72	8	94
(Ribosomal_L36e);(Ribosomal_L7Ae)	1	124	138	134	138	9	307	72	9	93
(Ribosomal_L37e);(Ribosomal_L39)	1	118	137	139	175	29	220	73	7	85
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)	1	93	107	123	112	10	188	67	6	76
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)	1	132	206	144	206	1	235	81	5	92
(MHC_II_alpha)_(C1-set);(MHC2-interact)	1	5	5	10	11	10	673	100	100	50
(MHC_II_beta)_(C1-set);(MHC2-interact)	1	5	5	10	11	10	683	100	100	50
(TNF);(TNFR_c6)_(TNFR_c6)	1	8	11	8	11	12	805	91	45	100
(RbpA);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	8	11	8	11	81	1218	100	27	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2 _45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	21	36	21	37	11	1877	100	42	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_ Rpb2_7)	1	21	36	21	37	90	7940	100	42	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)	1	17	30	18	31	36	2434	100	60	94
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_ Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	21	36	21	37	80	261	100	42	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_ Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(Sigma70_r1_2)_(S igma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	16	27	16	28	81	2038	100	56	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma54_AID)_(Sigma54_CBD)_(Sigma5 4_DBD)	1	5	5	7	6	87	1261	100	60	71
(Herpes_MCP);(Herpes_V23)	1	5	5	5	5	21	550	100	0	100
(Herpes_MCP);(Herpes_V23)	2	5	5	5	5	21	893	100	0	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)	1	71	85	79	85	36	489	61	13	90
(Ribosomal_L22);(Ribosomal_L6e)	1	16	16	79	19	82	107	75	12	20
(Ribosomal_L32e);(Ribosomal_L6e)	1	63	77	79	77	41	519	60	13	80
(Ribosomal_L35Ae);(Ribosomal_L6e)	1	75	89	78	89	40	843	63	12	96
(V-set)_(C1-set);(V-set_2)_(C1-set)	1	59	85	61	86	12	1655	100	88	97
(V-set)_(C1-set);(V-set_2)_(C1-set)	3	5	12	61	86	62	344	0	0	8
(V-set)_(C1-set);(V-set_2)_(C1-set)	2	6	6	61	86	23	373	0	0	10
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _POL_M_15KD)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1 _3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	12	43	13	46	74	1189	100	93	92
(RNA_POL_M_15KD)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_ Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	13	45	13	46	74	8591	100	98	100
(RNA_POL_M_15KD)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_ Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	13	45	13	46	74	2311	100	98	100
(RNA_POL_M_15KD)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_ Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Si gma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	8	36	9	38	74	3863	100	97	89
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	15	45	15	45	67	1925	100	93	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	22	42	22	42	84	7932	100	76	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	14	37	14	38	78	2771	100	76	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_ (RNA_pol_Rpb2_7);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigma70_ner) _(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	10	25	10	25	89	2122	100	92	100
(Ribosomal_L23);(Ribosomal_L39)	1	9	69	11	69	38	272	100	1	82
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)	1	21	29	21	29	84	938	100	62	100
(SipA_VBS);(Vinculin)	1	6	6	6	6	10	1157	100	100	100
(A2M_recep)_(NTR);(MG1)_(MG2)_(MG3)_(MG4)_(A2M_BRD)	1	9	12	11	12	20	756	100	100	82
(ACR_tran);(Ank_2)_(Ank_2)_(Ank)	1	5	20	5	20	63	274	100	35	100
(ACR_tran);(Ank_2)_(Ank_2)_(Ank)	2	5	20	5	20	63	791	100	35	100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	1	45	62	57	65	6	571	100	76	79
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	2	40	56	57	65	19	255	100	75	70
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	3	35	48	57	65	19	261	100	79	61
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	1	46	63	57	65	10	481	100	76	81
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	2	45	62	57	65	19	547	100	76	79
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	3	44	60	57	65	19	513	100	78	77
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab)_(T3SS_ATPase_C)	1	60	79	60	80	18	1947	100	76	100
(ATP-synt);(ATP-synt_Eps)	1	29	37	29	37	10	795	100	84	100
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)	1	24	32	26	34	21	659	100	81	92
(ATP-synt);(IATP)	1	8	9	8	9	10	267	100	67	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(IATP)	1	8	9	8	9	16	813	100	67	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	1	13	21	13	21	45	1683	95	52	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	2	13	21	13	21	45	1135	95	48	100
(DUF5601)_(VPS9);(Ras)	1	5	7	5	7	24	1042	100	100	100
(EF-hand_7)_(EF-hand_7);(STPPase_N)_(Metallophos)	1	8	10	8	10	59	2075	100	100	100
(EZH2_WD-Binding)_(PRC2_HTH_1)_(preSET_CXC)_(SET);(VEFS-Box)	1	6	8	6	8	17	2659	100	75	100
(VEFS-Box);(WD40)_(WD40)_(WD40)_(WD40)	1	6	8	6	8	17	622	100	75	100
(GP120);(V-set_2)_(C1-set)	1	17	31	25	36	12	994	100	68	68
(GP120);(V-set_2)_(C1-set)	2	7	19	25	36	12	251	0	5	28
(Ribosomal_L10)_(RL10P_insert)_(Ribosomal_60s);(Ribosomal_L1 1_N)_(Ribosomal_L11)	1	9	9	32	9	25	267	44	0	28
(IBN_N)_(Xpo1)_(CRM1_repeat)_(CRM1_repeat_2)_(CRM1_repeat_3) _(CRM1_C);(Ras)	1	13	46	13	47	45	2019	100	80	100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	4	801	33	5	100
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)	1	59	73	61	73	34	662	67	7	97
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	71	570	33	5	100
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	1	20	33	25	38	71	255	24	3	80
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	2	5	5	25	38	75	262	40	0	20
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	71	531	33	5	100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	10	418	33	5	100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	38	25	39	71	252	34	5	100
(S10_plectin);(Stm1_N)_(HABP4_PAI-RBP1)	1	16	30	25	30	74	192	23	7	64
(Lig_chan-Glu_bd)_(Lig_chan);(SBP_bac_3)	1	6	12	6	15	38	1044	100	100	100
(CRPV_capsid);(Rhv)	1	21	21	24	25	6	1219	100	29	88
(CRPV_capsid);(Rhv)	2	5	6	24	25	14	4300	100	50	21
(AAA_23);(SMC_N)	1	5	6	5	6	88	2728	100	100	100
(ATP-synt);(ATP-synt_DE_N)	1	6	6	6	6	21	685	100	67	100
(Ig_6)_(Ig_2)_(Ig_3);(IL1)	1	7	7	7	7	12	1689	100	86	100
(EF-hand_6)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(EzrA)	1	15	16	17	21	35	1540	94	19	88
(EF-hand_6)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(EzrA)	2	13	16	17	21	34	1306	100	25	76
(Cohesin);(Dockerin_1)	1	9	9	16	15	8	908	100	100	56
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	1	12	12	28	13	22	246	92	8	43
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	2	11	11	28	13	22	247	91	9	39
(IL2RB_N1)_(fn3);(IL6Ra-bind)_(fn3)	1	5	6	5	6	59	893	100	33	100
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	18	21	18	21	6	2474	100	57	100
(Complex1_30kDa);(Oxidored_q6)	1	18	21	25	25	28	552	100	57	72
(Complex1_30kDa);(Fer4_7)	1	8	8	18	15	88	236	100	62	44
(Complex1_30kDa);(Complex1_49kDa)	1	25	28	25	28	5	2460	100	43	100
(Fer4_7);(Oxidored_q6)	1	17	20	21	24	10	1290	100	60	81
(Complex1_49kDa);(Oxidored_q6)	1	21	24	25	28	7	1297	100	50	84
(Complex1_49kDa);(Fer4_7)	1	21	24	21	24	17	1503	100	50	100
(ASF1_hist_chap);(TAF)	1	6	9	6	9	54	504	100	78	100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)	1	11	11	11	11	28	870	100	82	100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)	2	11	11	11	11	26	1296	100	73	100
(ECR1_N)_(EXOSC1);(Rrp40_N)_(KH_6)	1	11	11	11	11	28	449	100	82	100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	14	14	14	14	34	1195	100	64	100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	2	14	14	14	14	20	1421	100	64	100
(Inhibitor_I9);(Peptidase_S8)_(PCSK9_C1)_(PCSK9_C2)_(PCSK9_C 3)	1	10	14	10	14	10	1314	100	100	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb1_5)	1	7	8	7	8	45	4533	100	88	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_C)	1	7	8	7	8	41	683	100	88	100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	7	8	7	8	45	932	100	88	100
(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	7	8	7	8	45	509	100	75	100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_C)	1	7	8	7	8	41	1097	100	88	100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	7	8	7	8	45	998	88	88	100
(ABC_tran)_(OB_MalK)_(TOBE_2);(BPD_transp_1)	1	8	17	8	17	12	823	100	94	100
(ABC_tran)_(OB_MalK)_(TOBE_2);(MalF_P2)_(BPD_transp_1)	1	5	12	5	12	58	748	100	92	100
(BPD_transp_1);(MalF_P2)_(BPD_transp_1)	1	5	12	5	12	58	3837	100	83	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_RpbG)	1	5	6	5	6	84	1434	100	83	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	1	15	15	25	24	22	501	100	13	60
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	2	15	15	25	24	22	571	100	0	60
(eIF-6);(Ribosomal_L14)	1	18	18	24	18	60	830	100	39	75
(eIF-6);(Ribosomal_L24e)	1	5	5	14	6	47	434	100	100	36
(fn3);(HH_signal)	1	5	6	5	6	74	667	100	17	100
(ATP-synt_D);(vATP-synt_AC39)	1	13	13	17	16	12	795	100	0	76
(Ribosomal_L6)_(Ribosomal_L6);(RLI)_(Fer4)_(ABC_tran)_(ABC_t ran)	1	7	7	7	7	52	295	100	0	100
(Med18);(Med8)	1	9	9	9	9	10	607	100	22	100
(Med6);(Med8)	1	9	9	9	9	4	917	100	22	100
(Med11);(Med18)	1	5	6	10	6	11	369	100	33	50
(Med17);(Med8)	1	9	9	9	9	6	1175	100	22	100
(Med17);(Med6)	1	10	11	10	11	4	707	100	18	100
(Clp_N)_(Clp_N)_(AAA)_(AAA_lid_9)_(AAA_2)_(ClpB_D2-small);(M ecA)	1	5	5	5	5	85	1282	100	20	100
(Clp_N)_(Clp_N)_(AAA)_(AAA_lid_9)_(AAA_2)_(ClpB_D2-small);(M ecA)	2	5	5	5	5	85	567	100	0	100
(Img2);(Ribosomal_L4)	1	14	14	16	16	17	974	86	14	88
(Ribosomal_L4);(Ribosomal_L50)	1	13	13	13	13	5	1185	85	15	100
(MRP-L27);(Ribosomal_L23)	1	13	13	13	13	6	1458	85	15	100
(MRP-L27);(MRP-L47)	1	13	13	13	13	15	1736	85	15	100
(MRP-L27);(Ribosomal_L34)	1	13	13	13	13	22	423	85	15	100
(L51_S25_CI-B8);(Ribosomal_L13)	1	13	13	15	15	20	773	85	15	87
(L51_S25_CI-B8);(Ribosomal_L50)	1	10	10	14	14	80	694	90	30	71
(L51_S25_CI-B8);(Ribosomal_L21p)	1	13	13	15	15	3	1285	85	15	87
(L51_S25_CI-B8);(Ribosomal_L22)	1	6	6	15	6	21	298	83	0	40
(Img2);(Ribosomal_L27A)	1	9	9	16	11	87	1386	89	22	56
(KOW)_(Ribosomal_L6e);(Ribosomal_L35Ae)	1	11	11	11	11	21	862	91	9	100
(KOW)_(Ribosomal_L14e);(KOW)_(Ribosomal_L6e)	1	11	11	11	11	21	534	91	9	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosoma l_L10)_(RL10P_insert)	1	11	11	11	11	56	568	100	0	100
(Ribosomal_L3);(TGS)_(tRNA_SAD)	1	10	10	10	10	82	576	90	20	100
(Img2);(MRP-63)	1	10	10	10	10	72	603	90	20	100
(MRPL52);(Ribosomal_L20)	1	9	9	11	11	81	400	89	22	82
(MRPL52);(Ribosomal_L21p)	1	9	9	11	11	77	633	89	22	82
(MRP-L51);(Ribosomal_L28)	1	9	9	9	9	82	328	89	22	100
(CR6_interact);(MRP-L51)	1	10	10	10	10	76	424	90	20	100
(MRP-L47);(MRP-L51)	1	9	9	9	9	82	242	89	22	100
(MRP-63);(MRPL52)	1	10	10	10	10	72	386	90	20	100
(MRPL52);(Ribosomal_L30)	1	9	9	11	11	81	1038	89	22	82
(PDCD9);(Ribosomal_L23)	1	9	9	9	9	80	511	89	22	100
(MRP_L53);(Ribosomal_S18)	1	10	10	10	10	85	519	90	20	100
(MRP-63);(Ribosomal_S18)	1	8	8	10	8	72	264	88	0	80
(MRP-63);(Ribosomal_L30)	1	9	9	9	9	72	1221	89	22	100
(CR6_interact);(Ribosomal_L28)	1	9	9	9	9	76	375	89	22	100
(CR6_interact);(Ribosomal_L33)	1	9	9	9	9	76	509	89	22	100
(PDCD9);(Ribosomal_L28)	1	9	9	9	9	83	840	89	22	100
(MRP-L47);(PDCD9)	1	9	9	9	9	83	553	89	22	100
(MRP-L51);(Ribosomal_L4)	1	9	9	9	9	82	1824	89	22	100
(CR6_interact);(Ribosomal_L4)	1	9	9	9	9	76	472	89	22	100
(PBP);(Ribosomal_L27A)	1	9	9	9	9	88	273	89	22	100
(PBP);(Ribosomal_L35p)	1	9	9	9	9	80	1103	89	22	100
(PBP);(Ribosomal_L18p)	1	10	10	10	10	87	2540	90	20	100
(PBP);(Ribosomal_S10)	1	10	10	10	10	76	681	90	20	100
(PBP);(Ribosomal_L27)	1	9	9	11	11	87	1808	89	22	82
(PBP);(RF-1)	1	11	11	11	11	77	905	91	18	100
(Ribosomal_L22);(TGS)_(tRNA_SAD)	1	10	10	10	10	78	364	90	20	100
(Ribosomal_L32p);(TGS)_(tRNA_SAD)	1	9	9	10	9	85	264	89	22	90
(MRP_L53);(Ribosomal_L10)	1	9	9	9	9	85	863	89	22	100
(MRP-63);(Ribosomal_L10)	1	9	9	9	9	72	513	89	22	100
(MRP-L28);(MRP-L46)_(NUDIX)	1	12	12	14	14	21	2278	83	17	86
(MRP-L28);(Ribosomal_S10)	1	10	10	10	10	72	1358	90	30	100
(KOW)_(ribosomal_L24);(MRP-L27)	1	9	9	9	9	77	1367	89	22	100
(MRP-L27);(Ribosomal_L28)	1	9	9	9	9	77	496	89	22	100
(MRP-S32);(Ribosomal_L13)	1	9	9	9	9	69	294	89	22	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L13)	1	12	12	13	12	14	745	83	17	92
(MRP-L51);(Ribosomal_L35p)	1	9	9	9	9	80	394	89	22	100
(L51_S25_CI-B8);(MRP-S32)	1	10	10	10	10	69	652	90	30	100
(MRP-S32);(Ribonucleas_3_3)_(dsrm)	1	9	9	10	9	69	686	89	33	90
(MRP-S32);(Ribosomal_L20)	1	8	8	9	8	69	903	88	25	89
(MRP-S32);(Ribosomal_L22)	1	9	9	9	9	69	423	89	22	100
(L51_S25_CI-B8);(Ribonucleas_3_3)_(dsrm)	1	13	13	13	13	14	1512	85	23	100
(L51_S25_CI-B8);(Ribosomal_L20)	1	9	9	11	11	87	593	89	22	82
(L51_S25_CI-B8);(MRP-63)	1	10	10	10	10	72	381	90	20	100
(MRP-L51);(Ribosomal_L27A)	1	9	9	9	9	82	282	89	22	100
(MRP-63);(Ribosomal_L27A)	1	9	9	9	9	72	529	89	22	100
(RF-1);(Ribosomal_L27A)	1	10	10	10	10	77	1422	90	20	100
(PDCD9);(Ribosomal_L2)_(Ribosomal_L2_C)	1	9	9	9	9	85	783	89	22	100
(CR6_interact);(Ribosomal_L27A)	1	9	9	9	9	76	1089	89	22	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L20)	1	9	9	10	9	87	381	89	22	90
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L21p)	1	9	9	13	9	77	329	89	22	69
(MRP-L51);(Ribonucleas_3_3)_(dsrm)	1	10	10	10	10	82	373	90	20	100
(MRP-63);(Ribosomal_L16)	1	9	9	9	9	72	335	89	22	100
(MRP-L46)_(NUDIX);(Ribosomal_S10)	1	9	9	9	9	76	383	89	22	100
(Ribosomal_S7);(S1)_(EIF_2_alpha)	1	7	7	7	7	57	665	100	14	100
(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C);(S1)_(EIF_2_alpha)	1	9	9	9	9	54	803	100	11	100
(MRP-S26);(Ribosomal_S6)	1	13	13	13	13	3	983	85	0	100
(DAP3);(Ribosomal_S7)	1	10	10	13	13	85	949	90	0	77
(MRP-S32);(Ribosomal_L21p)	1	8	8	8	8	69	820	88	25	100
(DAP3);(Ribosomal_S9)	1	16	16	16	16	21	1033	88	0	100
(Ribosomal_L16);(Ribosomal_L37)	1	8	8	8	8	76	354	88	25	100
(MRP-S24);(MRP-S33)	1	10	10	10	10	10	553	90	0	100
(Mitoc_L55);(MRP-L46)_(NUDIX)	1	7	7	7	7	70	1277	86	14	100
(MRP-S33);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	10	10	82	946	90	0	100
(RF-1);(Ribosomal_L18p)	1	8	8	8	8	77	451	88	25	100
(Mitoc_L55);(Ribosomal_S10)	1	8	8	8	8	70	926	88	25	100
(MRP-S26);(Ribosomal_S15)	1	12	12	12	12	10	555	83	0	100
(MRP-S22);(Ribosomal_S16)	1	10	10	10	10	68	1073	90	0	100
(L51_S25_CI-B8);(Ribosomal_S16)	1	10	10	10	10	87	635	90	0	100
(MRP-S26);(Ribosomal_S16)	1	13	13	13	13	3	823	85	0	100
(L51_S25_CI-B8);(Ribosomal_S17)	1	10	10	10	10	86	1296	90	0	100
(MRP-S33);(Ribosomal_S14)	1	13	13	13	13	22	1197	85	0	100
(MRP-S26);(Ribosomal_S17)	1	8	8	10	8	75	250	88	0	80
(MRP-S22);(Ribosomal_S18)	1	10	10	10	10	68	1990	90	0	100
(MRP-S26);(Ribosomal_S18)	1	10	10	13	10	75	795	90	0	77
(MRP-S26);(Ribosomal_S18)	2	10	10	13	10	75	589	90	0	77
(MRP-S27);(Ribosomal_S18)	1	8	8	8	8	81	310	100	0	100
(MRP-S23);(Ribosomal_S18)	1	10	10	10	10	80	460	90	0	100
(MRP-S35);(Ribosomal_S18)	1	8	8	10	9	83	228	88	0	80
(MRP-S35);(Ribosomal_S21)	1	10	10	10	10	85	693	90	0	100
(L51_S25_CI-B8);(MRP-S22)	1	10	10	10	10	68	449	90	0	100
(MRP-S23);(MRP-S35)	1	10	10	10	10	82	932	90	0	100
(L51_S25_CI-B8);(MRP-S26)	1	10	10	10	10	75	594	90	0	100
(MRP-S34);(Ribosomal_S16)	1	8	8	13	11	82	232	88	0	62
(MRP-S34);(Ribosomal_S18)	1	10	10	10	10	82	846	90	0	100
(MRP-S22);(MRP-S34)	1	10	10	10	10	68	283	90	0	100
(MRP-S26);(MRP-S34)	1	10	10	10	10	75	766	90	0	100
(MRP-S27);(MRP-S34)	1	8	8	8	8	81	1372	100	0	100
(MRP-S31);(MRP-S33)	1	10	10	10	10	75	702	90	0	100
(MRP-S23);(Ribosomal_S2)	1	10	10	10	10	75	1806	90	0	100
(MRP-S35);(Ribosomal_S2)	1	10	10	10	10	75	1118	90	0	100
(MRP-S24);(MRP-S31)	1	10	10	10	10	75	277	90	0	100
(MRP-S24);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	10	10	82	493	90	0	100
(MRP-S24);(Ribosomal_S9)	1	9	9	10	9	78	217	100	0	90
(MRP-S24);(Ribosomal_S10)	1	10	10	10	10	86	610	90	0	100
(MRP-S24);(Ribosomal_S14)	1	10	10	10	10	86	984	90	0	100
(CHCH);(Ribosomal_S6)	1	10	10	10	10	85	502	90	0	100
(CHCH);(Ribosomal_S7)	1	10	10	13	13	85	896	90	0	77
(CHCH);(Ribosomal_S21)	1	10	10	13	13	7	941	90	0	77
(CHCH);(MRP-S35)	1	10	10	10	10	85	385	90	0	100
(MRP-S31);(Ribosomal_S10)	1	10	10	10	10	75	257	90	0	100
(MRP-S22);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	10	10	68	1174	90	0	100
(MRP-S23);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	10	10	82	620	90	0	100
(L51_S25_CI-B8);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	10	10	82	557	90	0	100
(MRP-S31);(Ribosomal_S14)	1	10	10	10	10	75	624	90	0	100
(Mitoc_L55);(MRP-L28)	1	8	8	8	8	70	732	88	25	100
(V_ATPase_I);(V-ATPase_G)	1	6	6	9	9	52	468	100	0	67
(V_ATPase_I);(V-ATPase_H_N)_(V-ATPase_H_C)	1	6	6	9	9	52	1014	100	0	67
(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_bdg)_(PR P8_domainIV)_(JAB)_(PROCT);(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )_(WD40)_(WD40)	1	13	13	32	13	39	1721	100	15	41
(G10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	11	11	11	11	42	910	100	0	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C); (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	24	24	28	28	34	1048	100	17	86
(Cwf_Cwc_15);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )	1	28	28	28	28	22	1299	100	7	100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	29	29	29	29	4	1580	100	10	100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	2	10	10	29	29	42	842	100	0	34
(Pro_isomerase);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(W D40)	1	10	10	11	10	42	719	100	0	91
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)	1	56	56	56	56	37	1426	100	29	100
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	1	41	41	56	56	43	501	100	15	73
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	2	26	26	56	56	43	574	100	38	46
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	1	54	54	54	54	31	1638	100	26	100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	2	23	23	54	54	31	253	100	22	43
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)	1	51	51	54	51	27	314	100	27	94
(PRP4)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(Rib osomal_L7Ae)	1	8	8	11	8	32	712	100	50	73
(Nop)_(Prp31_C);(Ribosomal_L7Ae)	1	10	10	12	10	25	502	100	50	83
(DIM1);(Nop)_(Prp31_C)	1	10	10	10	10	25	414	100	50	100
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)	1	52	52	52	52	27	623	100	27	100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)	1	43	43	47	43	38	2558	100	26	91
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(P C_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)	1	37	37	42	42	43	778	100	22	88
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_( RPN6_C_helix)	1	9	9	38	25	43	448	100	33	24
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_( RPN6_C_helix)	3	8	8	38	25	43	320	100	25	21
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(DASH_Hsk3)_(Pro t_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	19	19	20	20	36	3249	100	21	95
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)	1	18	18	40	36	37	319	100	28	45
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)	2	10	10	40	36	37	894	100	30	25
(JAB)_(MitMem_reg);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_ (HEAT_2)_(RPN2_C)	1	32	32	50	38	60	888	100	22	64
(PCI)_(Rpn9_C);(VWA_2)	1	24	24	36	36	31	552	100	21	67
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	1	29	29	39	36	22	376	100	17	74
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	2	29	29	39	36	28	454	100	17	74
(Proteasome_A_N)_(Proteasome);(RPN6_N)_(PCI)_(RPN6_C_helix)	1	29	29	44	43	43	662	100	31	66
(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteasome)	1	24	24	27	26	34	428	100	29	89
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(PC_rep)_(P C_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)	1	31	31	46	45	43	1077	100	13	67
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(PC_rep)_(P C_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)	3	6	6	46	45	44	444	100	100	13
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_(RPN6_C_he lix)	1	10	10	30	13	43	518	100	20	33
(Pescadillo_N)_(BRCT_2);(Ribosomal_L30_N)_(Ribosomal_L30)	1	9	9	9	9	89	1113	100	22	100
(eIF-6);(Ribosomal_L3)	1	11	11	22	11	61	267	100	45	50
(MRP-S28)_(TBCA);(Ribosomal_S9)	1	7	7	7	7	81	1290	86	0	100
(DAP3);(MRP-S28)_(TBCA)	1	7	7	7	7	87	1102	86	0	100
(MRP-S28)_(TBCA);(MRP-S31)	1	7	7	7	7	82	1135	86	0	100
(Sgf11_N)_(Sgf11);(zf_C2H2_13)	1	5	10	5	10	10	318	100	90	100
(Calici_coat);(CRPV_capsid)	1	20	20	20	20	7	4578	100	20	100
(Furin-like_2);(ZNRF_3_ecto)	1	9	9	9	9	9	1004	100	89	100
(JAB)_(MitMem_reg);(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	23	23	35	24	60	432	100	9	66
(Complex1_49kDa);(Oxidored_q4)	1	18	18	20	18	25	439	100	33	90
(Complex1_49kDa);(NADHdh)	1	21	21	21	21	21	1143	100	29	100
(NADHdh);(Oxidored_q6)	1	17	17	21	21	21	1214	100	35	81
(Fer4_7);(NADHdh)	1	18	18	18	18	21	704	100	33	100
(Oxidored_q4);(Oxidored_q6)	1	9	9	20	10	25	483	100	22	45
(Acetyltransf_1);(ANAPC3)_(TPR_1)_(NARP1)	1	5	7	6	9	90	3095	100	71	83
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_beta_N)_(TFIIF_beta)	1	17	17	19	17	24	1367	100	6	89
(TBP)_(TBP);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	18	18	19	18	33	506	100	6	95
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosoma l_L10)_(RL10P_insert)_(Ribosomal_60s)	1	7	7	7	7	52	550	29	0	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosoma l_S30)	1	8	8	15	13	60	267	75	0	53
(AAA_16)_(ORC4_C);(AAA_16)_(ORC5_C)	1	5	5	5	5	10	2690	100	60	100
(Actin);(Dynamitin)	1	7	7	7	7	31	623	100	29	100
(ATP-synt_A);(Mt_ATP-synt_B)	1	10	10	16	13	22	813	100	40	62
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_alpha)	1	15	15	17	17	17	1236	100	0	88
(TFIIF_alpha);(TFIIF_beta_N)_(TFIIF_beta)	1	17	17	17	17	8	2204	100	6	100
(SHS2_Rpb7-N)_(S1);(TFIIE_alpha)_(TF_Zn_Ribbon)	1	6	6	6	6	55	516	100	0	100
(RNA_POL_M_15KD)_(TFIIS_C);(TFIIF_alpha)	1	9	9	15	13	19	237	100	0	60
(bZIP_1)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)	1	17	17	17	17	89	2310	100	12	100
(bZIP_1)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(JAB)_(MitMem_re g)	1	8	8	16	14	60	403	100	12	50
(JIP_LZII)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_ N)_(Proteasome)	1	27	27	27	27	4	695	100	26	100
(bZIP_1)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(JIP_LZII)_(Prot _ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	17	17	17	17	89	3746	100	12	100
(RPN7)_(PCI);(TPR_2)_(PCI)_(Rpn3_C)	1	31	31	31	31	72	1304	100	26	100
(CSN8_PSD8_EIF3K);(TPR_2)_(PCI)_(Rpn3_C)	1	30	30	30	30	66	1870	100	23	100
(JAB)_(MitMem_reg);(TPR_2)_(PCI)_(Rpn3_C)	1	27	27	31	31	72	784	100	11	87
(DSS1_SEM1);(TPR_2)_(PCI)_(Rpn3_C)	1	21	21	30	25	34	983	100	0	70
(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C);( TPR_2)_(PCI)_(Rpn3_C)	1	29	29	29	29	72	607	100	21	100
(MMS1_N)_(CPSF_A);(PHF5)	1	13	13	18	13	10	636	100	8	72
(Fer4_7);(zf-CHCC)	1	10	10	10	10	28	849	100	50	100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(ETC_C1_NDUFA4)	1	10	10	11	10	29	486	100	20	91
(NADHdh);(NADHdh_A3)	1	13	13	13	13	38	664	100	38	100
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)	1	12	12	13	12	54	925	100	33	92
(Proton_antipo_M)_(NADH_dehy_S2_C);(Tim17)	1	11	11	12	11	54	522	100	36	92
(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C);(Tim17)	1	11	11	13	11	64	522	100	36	85
(Complex1_LYR);(ETC_C1_NDUFA4)	1	10	10	11	10	28	480	100	20	91
(NDUF_B5);(NDUFB10)	1	12	12	13	12	24	952	100	42	92
(NDUF_B5);(NDUF_C2)	1	12	12	13	12	24	665	100	42	92
(dNK);(NDUF_C2)	1	11	11	13	11	42	316	100	36	85
(MWFE);(NADHdh)	1	14	14	14	14	30	1506	100	36	100
(GRIM-19);(NADHdh)	1	14	14	14	14	22	881	100	36	100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)	1	13	13	13	13	54	1194	100	38	100
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	13	13	13	13	54	1618	100	38	100
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	13	13	13	13	51	644	100	38	100
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	12	12	13	12	54	810	100	42	92
(dNK);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	12	12	13	12	54	1332	100	33	92
(NDUF_B5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	11	11	13	12	24	255	100	36	85
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	13	13	13	13	42	1002	100	38	100
(NADHdh_A3);(Oxidored_q4)	1	12	12	13	12	38	362	100	42	92
(NDUF_B5);(Oxidored_q5_N)_(Proton_antipo_M)	1	13	13	13	13	24	1066	100	38	100
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)	1	13	13	14	13	31	648	100	38	93
(Complex1_LYR);(Oxidored_q5_N)_(Proton_antipo_M)	1	13	13	14	14	22	331	100	31	93
(Ndufs5);(Oxidored_q2)	1	14	14	14	14	21	433	100	36	100
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	13	13	14	13	31	953	100	38	93
(Complex1_LYR);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	14	14	14	14	22	1294	100	36	100
(Ndufs5);(Oxidored_q3)	1	12	12	14	12	51	717	100	42	86
(GRIM-19);(NADHdh_A3)	1	12	12	13	12	38	515	100	42	92
(NDUF_B5);(Ndufs5)	1	12	12	13	12	24	873	100	42	92
(Complex1_30kDa);(ETC_C1_NDUFA5)	1	14	14	14	14	7	1317	100	36	100
(Complex1_49kDa);(ETC_C1_NDUFA5)	1	13	13	14	13	34	352	100	38	93
(Complex1_30kDa);(Complex1_LYR)	1	14	14	14	14	28	1019	100	36	100
(Complex1_LYR);(NDUF_B5)	1	12	12	13	12	24	455	100	42	92
(Complex1_30kDa);(ETC_C1_NDUFA4)	1	11	11	11	11	29	1266	100	18	100
(NADH_dh_m_C1);(NDUF_C2)	1	13	13	13	13	42	741	100	38	100
(NDUF_B5);(NDUF_B6)	1	8	8	12	8	77	258	100	12	67
(NDUF_B6);(NDUFB10)	1	8	8	12	12	70	1107	100	12	67
(NDUF_B6);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	8	8	12	12	64	892	100	12	67
(NDUF_B6);(NDUF_B7)	1	8	8	12	8	70	757	100	12	67
(NDUF_B6);(PP-binding)	1	12	12	12	12	25	461	100	42	100
(Complex1_49kDa);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	10	10	10	10	54	780	100	40	100
(Complex1_49kDa);(Oxidored_q2)	1	5	5	15	5	65	273	100	0	33
(Complex1_49kDa);(Oxidored_q5_N)_(Proton_antipo_M)	1	6	6	10	6	66	319	100	0	60
(Complex1_49kDa);(dNK)	1	6	6	10	6	78	462	100	0	60
(Complex1_49kDa);(GRIM-19)	1	13	13	13	13	22	894	100	38	100
(NDUF_B8);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	8	8	8	8	64	1504	100	12	100
(NDUF_B8);(Oxidored_q5_N)_(Proton_antipo_M)	1	7	7	8	7	66	407	100	0	88
(ESSS);(Oxidored_q5_N)_(Proton_antipo_M)	1	12	12	12	12	72	1579	100	42	100
(NDUF_C2);(Ndufs5)	1	5	5	12	5	70	206	100	20	42
(NDUF_C2);(Oxidored_q5_N)_(Proton_antipo_M)	1	8	8	12	8	66	254	100	12	67
(Fer4_7);(NDUFA12)	1	8	8	9	8	33	1770	100	62	89
(Fer4_7);(NADHdh_A3)	1	8	8	8	8	38	293	100	62	100
(Fer4_7);(GRIM-19)	1	9	9	9	9	37	334	100	56	100
(CI-B14_5a);(ETC_C1_NDUFA5)	1	8	8	9	8	83	386	100	12	89
(CI-B14_5a);(GRIM-19)	1	8	8	9	8	9	439	100	12	89
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)	1	12	12	12	12	66	773	100	42	100
(NDUF_B4);(Oxidored_q5_N)_(Proton_antipo_M)	1	13	13	13	13	22	1305	100	38	100
(Complex1_LYR);(NDUF_B12)	1	9	9	9	9	4	462	100	11	100
(Oxidored_q5_N)_(Proton_antipo_M);(Tim17)	1	11	11	12	11	64	227	100	36	92
(NADH_B2);(NDUF_B12)	1	8	8	8	8	7	860	100	12	100
(ESSS);(NDUF_B5)	1	12	12	12	12	24	868	100	42	100
(NADH_oxidored);(NDUF_B5)	1	12	12	12	12	24	502	100	42	100
(CI-B14_5a);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	8	8	9	8	83	220	100	12	89
(Complex1_LYR);(NDUF_B6)	1	12	12	12	12	25	930	100	42	100
(CI-B14_5a);(Complex1_49kDa)	1	9	9	9	9	83	1527	100	22	100
(NDUF_B4);(NDUF_B8)	1	7	7	8	7	75	1844	100	0	88
(Complex1_LYR);(NDUF_B8)	1	7	7	8	7	84	329	100	0	88
(NDUF_B7);(NDUF_B8)	1	6	6	8	6	82	1116	100	0	75
(CI-B14_5a);(Complex1_30kDa)	1	9	9	9	9	83	1262	100	22	100
(ESSS);(NDUFB10)	1	12	12	12	12	31	1431	100	42	100
(NDUF_C2);(NDUFB10)	1	12	12	12	12	31	605	100	42	100
(NADH_oxidored);(NDUFB10)	1	8	8	12	8	74	315	100	12	67
(NDUF_B4);(NDUFB10)	1	12	12	12	12	31	330	100	42	100
(NDUF_B7);(NDUFB10)	1	8	8	13	8	81	433	100	12	62
(dNK);(ESSS)	1	6	6	11	8	58	306	100	50	55
(dNK);(NADH_dh_m_C1)	1	11	11	12	11	58	423	100	45	92
(CI-B14_5a);(Fer4_7)	1	5	5	5	5	83	985	100	40	100
(GRIM-19);(Ndufs5)	1	13	13	13	13	22	1133	100	38	100
(NDUFA12);(Oxidored_q6)	1	12	12	13	12	33	304	100	42	92
(CI-B14_5a);(NDUFA12)	1	8	8	9	8	83	446	100	25	89
(NDUF_B4);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	12	12	13	12	61	860	100	42	92
(NDUF_B7);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	12	12	13	13	24	677	100	33	92
(NADH_B2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	8	8	8	8	7	1471	100	12	100
(NDUF_B12);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	9	9	9	9	4	733	100	11	100
(MWFE);(Oxidored_q3)	1	8	8	13	8	51	243	100	12	62
(GRIM-19);(Oxidored_q3)	1	13	13	13	13	12	659	100	38	100
(Complex1_LYR);(NDUF_B4)	1	12	12	13	12	61	1055	100	42	92
(GRIM-19);(MWFE)	1	13	13	13	13	22	542	100	38	100
(NADH_B2);(NDUF_B7)	1	6	6	8	8	7	687	100	17	75
(NDUF_B12);(PP-binding)	1	8	8	9	8	82	658	100	12	89
(DUF5323);(Ribosomal_L21p)	1	7	7	7	7	3	560	100	57	100
(ArfA);(PCRF)_(RF-1)	1	10	10	10	10	42	1140	100	40	100
(Helicase_C_3)_(ResIII)_(ERCC3_RAD25_C);(Tfb5)	1	9	9	10	9	5	468	100	0	90
(Tfb2)_(Tfb2_C);(Tfb5)	1	10	10	10	10	5	954	100	0	100
(Fcf1);(Ribosomal_S4)_(S4)	1	5	5	5	5	52	632	100	0	100
(Fcf1);(Ribosomal_S8)	1	5	5	5	5	52	318	100	0	100
(EMG1);(Ribosomal_S7)	1	5	5	6	5	69	362	100	0	83
(KH_8)_(KH_1);(Ribosomal_S11)	1	8	8	13	13	51	826	100	25	62
(KH_8)_(KH_1);(Ribosomal_S11)	2	5	5	13	13	69	564	100	0	38
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan);(PMP22_Claudin)	1	6	6	9	7	68	580	100	33	67
(ABC_tran)_(BCA_ABC_TP_C);(LptF_LptG)	1	7	7	7	7	21	968	100	29	100
(CX9C)_(CHCH);(MWFE)	1	9	9	9	9	60	776	100	56	100
(CX9C)_(CHCH);(NADHdh_A3)	1	9	9	9	9	43	952	100	56	100
(CX9C)_(CHCH);(NDUF_C2)	1	9	9	9	9	45	574	100	56	100
(CX9C)_(CHCH);(Ndufs5)	1	9	9	9	9	60	417	100	56	100
(CX9C)_(CHCH);(NADHdh)	1	9	9	9	9	60	245	100	56	100
(CX9C)_(CHCH);(NDUF_B5)	1	9	9	9	9	24	475	100	56	100
(CX9C)_(CHCH);(Oxidored_q5_N)_(Proton_antipo_M)	1	5	5	9	5	75	256	100	20	56
(CX9C)_(CHCH);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	5	5	9	5	63	268	100	20	56
(NDUFA12);(zf-CHCC)	1	9	9	12	9	31	631	100	22	75
(CX9C)_(CHCH);(GRIM-19)	1	9	9	9	9	42	1590	100	56	100
(CI-B14_5a);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_15)_(Molybdop_F e4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	8	8	8	8	83	467	100	25	100
(NAD_binding_10);(Oxidored_q6)	1	8	8	8	8	32	773	100	12	100
(NAD_binding_10);(Oxidored_q4)	1	5	5	7	6	30	273	100	0	71
(NAD_binding_10);(zf-CHCC)	1	8	8	8	8	31	485	100	12	100
(Complex1_LYR);(NAD_binding_10)	1	8	8	8	8	27	500	100	12	100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(NDUFV3)	1	8	8	8	8	74	1028	100	25	100
(2Fe-2S_thioredx);(NDUFV3)	1	8	8	8	8	74	871	100	25	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_15)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(zf-CHCC)	1	8	8	8	8	81	447	100	25	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_15)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(L51_S25_CI-B8)	1	8	8	8	8	84	1175	100	25	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_15)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(NDUFA12)	1	8	8	8	8	87	587	100	25	100
(Complex1_30kDa);(NAD_binding_10)	1	8	8	8	8	32	490	100	12	100
(ETC_C1_NDUFA4);(NAD_binding_10)	1	8	8	8	8	31	311	100	12	100
(Ribosomal_L7Ae);(Stm1_N)	1	6	6	6	6	87	276	50	0	100
(HBS1_N)_(GTP_EFTU)_(GTP_EFTU_D2)_(GTP_EFTU_D3);(Ribosom_S12 _S23)	1	5	5	5	5	33	322	100	0	100
(ATP-synt_A);(ATP-synt_B)	1	7	7	10	10	23	1600	100	0	70
(G-alpha);(HRM)_(7tm_2)	1	8	8	8	8	26	1047	100	0	100
(HRM)_(7tm_2);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(W D40)	1	8	8	8	8	26	269	100	0	100
(G-alpha);(V-set)_(V-set)	1	5	5	5	5	55	535	100	0	100
(Csm2_III-A);(RAMPs)	1	15	15	15	15	22	341	100	0	100
(Csm2_III-A);(RAMPs)	2	14	14	15	15	22	512	100	0	93
(Cas_Cmr3)_(Csm4_C);(RAMPs)	1	7	7	7	7	21	1465	100	0	100