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nterface
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PDBfam
Clusters with M>=5,SeqId<90 and pair Pfam Architecture
Pfam Architecture
Cluster#
#CFs/Cluster
#Entries/Cluster
#CFs/Group
#Entries/Group
Minimum Seq Identity
Surface Area
In PDBBA(%)
In PISABA(%)
CFs Cluster/Group(%)
(Proteasome);(Proteasome)_(Pr_beta_C)
1
64
332
68
411
13
1127
100
77
94
(Proteasome);(Proteasome)_(Pr_beta_C)
2
53
269
68
411
13
880
100
75
78
(Proteasome);(Proteasome)_(Pr_beta_C)
3
51
316
68
411
13
1396
100
78
75
(Proteasome);(Proteasome_A_N)_(Proteasome)
1
88
379
88
445
3
427
100
69
100
(Proteasome);(Proteasome_A_N)_(Proteasome)
2
88
379
88
445
2
494
100
71
100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)
1
68
285
68
411
0
627
100
71
100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)
2
68
333
68
411
13
622
100
73
100
(ACR_tran);(HlyD_D23)
1
6
12
6
12
15
1142
100
83
100
(ACR_tran);(HlyD_D23)
2
6
12
6
12
15
1363
100
83
100
(Actin);(ARPC4)
2
7
20
8
21
59
417
100
95
88
(Actin);(P21-Arc)
1
8
21
8
21
32
831
100
86
100
(Actin);(P34-Arc)
1
8
21
8
21
45
1563
100
95
100
(ARPC4);(P16-Arc)
1
8
21
8
21
29
874
100
95
100
(ARPC4);(P34-Arc)
1
8
21
8
21
11
1984
100
90
100
(C1-set);(Ig_2)_(ig)
1
5
7
7
8
81
574
100
14
71
(C1-set);(MHC_I)_(C1-set)
1
425
866
426
884
10
1279
100
91
100
(C1-set);(MHC_I)_(C1-set)
2
35
64
426
884
18
349
0
6
8
(C1-set);(MHC_I)_(C1-set)
3
29
87
426
884
18
262
0
0
7
(C1-set);(MHC_I)_(C1-set)
5
27
73
426
884
19
262
0
1
6
(C1-set);(MHC_I)_(C1-set)
6
24
46
426
884
72
334
0
0
6
(C1-set);(MHC_I)_(C1-set)
4
28
39
426
884
36
269
3
8
7
(C1-set);(MHC_I)_(C1-set)
10
14
47
426
884
83
515
0
4
3
(C1-set);(MHC_I)_(C1-set)
7
18
127
426
884
84
210
1
0
4
(C1-set);(MHC_I)_(C1-set)
9
17
41
426
884
22
230
0
0
4
(C1-set);(MHC_I)_(C1-set)
11
14
21
426
884
69
344
0
0
3
(C1-set);(MHC_I)_(C1-set)
13
11
19
426
884
77
307
0
0
3
(C1-set);(MHC_I)_(C1-set)
19
6
17
426
884
82
410
0
0
1
(C1-set);(MHC_I)_(C1-set)
12
14
19
426
884
22
320
21
26
3
(C1-set);(MHC_I)_(C1-set)
15
8
17
426
884
84
245
0
0
2
(C1-set);(MHC_I)_(C1-set)
14
9
12
426
884
69
259
0
0
2
(C1-set);(MHC_I)_(C1-set)
18
7
12
426
884
68
271
0
8
2
(C1-set);(MHC_I)_(C1-set)
16
8
11
426
884
68
383
9
0
2
(C1-set);(MHC_I)_(C1-set)
20
6
10
426
884
43
301
0
0
1
(C1-set);(MHC_I)_(C1-set)
17
8
10
426
884
68
304
0
0
2
(C1-set);(MHC_I)_(C1-set)
22
5
8
426
884
69
248
0
12
1
(C1-set);(MHC_I)_(C1-set)
23
5
6
426
884
70
296
0
0
1
(Ig_2)_(ig);(MHC_I)_(C1-set)
1
5
7
7
8
23
355
100
14
71
(Actin);(Gelsolin)
1
15
30
16
31
75
1183
100
100
94
(Actin);(Gelsolin)
2
10
24
16
31
80
399
0
0
62
(Actin);(Gelsolin)
3
10
24
16
31
80
274
0
0
62
(Actin);(WH2)
1
10
10
11
10
6
942
100
90
91
(Actin);(RPEL)
1
6
7
6
7
28
916
100
100
100
(Activin_recp);(TGF_beta)
1
8
12
12
17
15
784
100
92
67
(Activin_recp);(TGF_beta)
2
8
12
12
17
15
366
83
83
67
(Activin_recp);(TGF_beta)
3
7
8
12
17
41
753
100
50
58
(ecTbetaR2);(TGF_beta)
1
5
5
5
5
64
486
80
60
100
(ETF);(ETF)_(ETF_alpha)
1
10
17
10
17
9
3126
100
94
100
(Adaptin_N);(Clat_adaptor_s)
1
14
16
14
16
11
2689
100
69
100
(Adaptin_N);(Clat_adaptor_s)_(Adap_comp_sub)
1
11
13
11
13
40
3522
100
62
100
(AdenylateSensor);(AMPKBI)
1
6
20
6
21
22
1975
100
100
100
(AdenylateSensor);(CBS)_(CBS)_(CBS)_(CBS)
1
5
17
5
18
22
579
100
100
100
(AMPKBI);(CBS)_(CBS)_(CBS)_(CBS)
1
6
18
6
19
33
1111
100
100
100
(AF-4);(Cyclin_N)_(Cyclin_N)
1
5
5
5
5
23
1523
100
80
100
(Cyclin_N)_(Cyclin_N);(Pkinase)
1
6
7
6
7
14
1034
100
71
100
(Pkinase);(Tat)
1
5
6
6
6
10
227
100
67
83
(Globin);(NEAT)
1
5
5
5
5
45
630
80
60
100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)
1
9
16
9
17
41
419
100
94
100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)
2
9
16
9
17
41
692
100
94
100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)
3
7
14
9
17
43
381
7
7
78
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(FAD_binding_5)_(CO_deh_flav_ C)
1
10
27
10
27
13
1144
100
100
100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(Fer2)_(Fer2_2)
1
9
25
9
25
19
2063
100
100
100
(FAD_binding_5)_(CO_deh_flav_C);(Fer2)_(Fer2_2)
1
9
25
9
25
13
1341
100
100
100
(Alpha_E1_glycop);(Alpha_E2_glycop)
1
5
7
5
7
34
2364
100
57
100
(Amidase);(GatB_N)_(GatB_Yqey)
1
6
12
6
12
37
1326
100
100
100
(Amidase);(Glu-tRNAGln)
1
5
11
5
11
25
2486
100
100
100
(GatB_N)_(GatB_Yqey);(Glu-tRNAGln)
1
5
11
5
11
25
1786
100
100
100
(AMO);(Monooxygenase_B)
1
5
8
5
8
46
3780
100
88
100
(AmoC);(Monooxygenase_B)
1
5
8
5
8
46
806
100
88
100
(Thrombin_light);(Trypsin)
1
109
375
109
435
10
1160
100
97
100
(Thrombin_light);(Trypsin)
2
21
32
109
435
75
260
3
16
19
(Thrombin_light);(Trypsin)
4
6
17
109
435
75
323
0
0
6
(Antistasin);(Trypsin)
1
6
6
6
6
10
625
100
100
100
(Cytochrom_B_C);(Cytochrome_B)
1
5
13
5
13
11
3070
100
100
100
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)
1
9
15
9
15
66
1236
100
80
100
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)
2
5
11
9
15
82
495
0
0
56
(ArsA_ATPase);(CHD5)
1
6
6
6
6
88
516
100
50
100
(ATP1G1_PLM_MAT8);(Na_K-ATPase)
1
5
30
6
37
20
408
100
100
83
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)
1
33
42
41
50
5
868
100
74
80
(ATP-synt_D);(ATP-synt_F)
1
15
18
24
29
18
1495
100
44
62
(Aurora-A_bind);(Pkinase)
1
5
5
5
5
84
1213
100
100
100
(B);(C1-set)_(C1-set)
1
7
11
7
11
56
718
91
64
100
(Skp1_POZ);(ubiquitin)
1
20
58
20
59
10
1076
100
83
100
(SecE);(SecY)
1
5
6
12
9
10
1682
100
100
42
(Histone);(Histone)_(Histone_H2A_C)
1
85
215
85
227
12
2486
100
76
100
(Histone);(Histone)_(Histone_H2A_C)
2
77
197
85
227
40
667
99
74
91
(Histone);(TAF)
1
96
227
97
247
13
2448
100
76
99
(Histone);(TAF)
2
78
193
97
247
9
507
99
73
80
(Histone);(TAF)
3
77
201
97
247
65
264
99
73
79
(Histone);(TAF)
4
8
118
97
247
88
256
0
3
8
(Histone)_(Histone_H2A_C);(TAF)
1
78
203
78
220
12
413
99
74
100
(Bcl-2);(Bclx_interact)
1
8
14
18
27
10
981
100
100
44
(Bcl-2);(Bclx_interact)
2
7
10
18
27
12
1012
100
100
39
(Bcl-2);(BID)
1
7
10
7
10
10
902
100
80
100
(Bclx_interact);(BH4)_(Bcl-2)
1
13
14
13
14
10
1006
100
100
100
(Beta-lactamase2);(BLIP)
1
7
14
7
14
37
1214
93
100
100
(BH3);(BH4)_(Bcl-2)
1
5
7
5
7
9
987
100
57
100
(E1_dh);(Transket_pyr)_(Transketolase_C)
1
11
42
11
42
25
1733
100
95
100
(E1_dh);(Transket_pyr)_(Transketolase_C)
2
11
42
11
42
25
1585
100
95
100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)
1
5
10
5
10
34
666
100
100
100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)
2
5
10
5
10
34
420
100
100
100
(Bowman-Birk_leg)_(Bowman-Birk_leg);(Trypsin)
1
5
7
6
8
41
588
100
71
83
(Bowman-Birk_leg)_(Bowman-Birk_leg);(Trypsin)
2
5
6
6
8
63
706
83
33
83
(Mago_nashi);(RRM_1)
1
8
9
8
9
69
1315
100
100
100
(MHC_I)_(C1-set);(V-set)_(C1-set)
1
78
151
91
171
10
431
97
40
86
(MHC_I)_(C1-set);(V-set)_(C1-set)
2
15
27
91
171
10
292
0
4
16
(MHC_I)_(C1-set);(V-set)_(C1-set)
3
5
14
91
171
53
303
0
21
5
(MHC_I)_(C1-set);(V-set)_(DUF1968)
1
78
155
82
167
10
477
97
43
95
(V-set)_(C1-set);(V-set)_(DUF1968)
1
208
380
208
390
7
2044
100
86
100
(V-set)_(C1-set);(V-set)_(DUF1968)
2
15
22
208
390
18
764
0
0
7
(V-set)_(C1-set);(V-set)_(DUF1968)
3
7
9
208
390
60
316
0
0
3
(V-set)_(C1-set);(V-set)_(DUF1968)
5
5
8
208
390
59
671
0
0
2
(V-set)_(C1-set);(V-set)_(DUF1968)
4
7
8
208
390
55
396
0
0
3
(V-set)_(C1-set);(V-set)_(DUF1968)
6
5
5
208
390
45
317
0
40
2
(C1-set);(MHC_I_3)_(C1-set)
1
40
134
40
137
12
1251
100
78
100
(MHC_I_3)_(C1-set);(V-set)_(C1-set)
1
10
61
21
76
23
313
98
59
48
(MHC_I_3)_(C1-set);(V-set)_(C1-set)
2
6
7
21
76
48
416
100
43
29
(MHC_I_3)_(C1-set);(V-set)_(DUF1968)
1
9
59
19
74
62
456
98
58
47
(MHC_I_3)_(C1-set);(V-set)_(DUF1968)
2
7
8
19
74
48
489
100
50
37
(C1-set)_(C1-set);(Ig_2)_(Ig_2)
2
10
15
11
16
48
485
93
7
91
(C1-set)_(C1-set);(Ig_2)_(Ig_2)
1
11
16
11
16
43
364
94
6
100
(Pico_P1A);(Rhv)
1
58
137
63
148
10
999
100
61
92
(Pico_P1A);(Rhv)
2
54
134
63
148
0
782
100
56
86
(Pico_P1A);(Rhv)
3
47
114
63
148
10
521
100
55
75
(Ca_chan_IQ);(EF-hand_7)_(EF-hand_7)
1
7
11
9
15
10
1209
91
73
78
(Calici_coat)_(Calici_coat_C);(V-set)
1
5
5
15
18
56
725
100
100
33
(Cas_Cas5d);(Cas_CT1975)
1
8
9
8
9
30
2029
100
78
100
(Cas_Cas5d);(CRISPR_Cse1)
1
8
9
8
9
10
1518
100
78
100
(Cas_CT1975);(CRISPR_assoc)
1
5
6
8
9
80
1004
100
83
62
(Cas_CT1975);(CRISPR_Cse1)
1
8
9
8
9
10
524
100
78
100
(Cas_CT1975);(CRISPR_Cse2)
1
8
9
8
9
17
402
100
78
100
(Cas_CT1975);(CRISPR_Cse2)
2
5
6
8
9
17
250
100
67
62
(CRISPR_Cse1);(CRISPR_Cse2)
1
8
9
8
9
10
476
100
67
100
(ubiquitin);(UQ_con)
1
31
37
48
46
1
646
95
46
65
(ubiquitin);(UQ_con)
2
12
15
48
46
4
645
53
33
25
(Me-amine-dh_H);(Me-amine-dh_L)
1
18
69
18
70
12
1509
99
94
100
(Me-amine-dh_H);(Me-amine-dh_L)
2
18
69
18
70
12
1139
94
96
100
(Cyclin_N)_(Cyclin_C);(Pkinase)
1
35
166
37
183
10
1544
99
93
95
(CENP-S);(CENP-X)
1
6
13
6
13
10
2295
100
100
100
(Spc24);(Spindle_Spc25)
1
6
6
6
6
10
1284
100
83
100
(Chloroa_b-bind);(PsaA_PsaB)
1
5
7
11
7
53
585
100
29
45
(Chloroa_b-bind);(PSI_PSAK)
1
5
6
11
12
30
434
100
17
45
(Fer4_7);(PsaA_PsaB)
1
15
19
15
22
80
410
100
32
100
(Fer4_7);(PsaA_PsaB)
2
15
22
15
22
0
838
100
41
100
(Fer4_7);(PsaD)
1
15
18
15
22
59
1498
100
28
100
(Fer4_7);(PSI_PsaE)
1
15
22
15
22
44
507
100
36
100
(PsaA_PsaB);(PsaD)
1
17
20
17
24
58
785
100
30
100
(PsaA_PsaB);(PsaD)
2
17
20
17
24
58
731
100
30
100
(PsaA_PsaB);(PsaL)
1
14
17
16
23
39
494
100
29
88
(PsaA_PsaB);(PsaL)
2
8
11
16
23
39
332
100
45
50
(PsaA_PsaB);(PSI_8)
1
16
23
16
23
7
641
100
39
100
(PsaA_PsaB);(PSI_PsaE)
1
17
21
17
24
44
406
100
24
100
(PsaA_PsaB);(PSI_PsaE)
2
14
18
17
24
45
285
100
28
82
(PsaA_PsaB);(PSI_PsaF)
1
16
20
16
23
42
937
100
30
100
(PsaA_PsaB);(PSI_PsaF)
2
16
20
16
23
42
1004
100
30
100
(PsaA_PsaB);(PSI_PsaH)
1
5
7
7
11
32
829
100
29
71
(PsaA_PsaB);(PSI_PsaJ)
1
14
18
17
22
45
324
100
33
82
(PsaA_PsaB);(PSI_PSAK)
1
17
21
17
24
4
657
100
14
100
(PsaD);(PsaL)
1
8
11
16
17
39
433
100
45
50
(PsaL);(PSI_8)
1
8
11
16
17
37
230
100
45
50
(PSI_8);(PSI_PsaH)
1
6
7
7
11
40
340
100
14
86
(PSI_PsaE);(PSI_PsaF)
1
12
14
16
14
42
255
100
29
75
(PSI_PsaF);(PSI_PsaJ)
1
16
20
16
23
42
679
100
25
100
(CKS);(Pkinase)
1
8
11
8
11
65
713
100
55
100
(Como_LCP);(Como_SCP)
1
8
10
8
11
37
1743
100
50
100
(Copper-bind);(Me-amine-dh_L)
1
5
9
8
12
62
486
100
89
62
(COX1);(COX2_TM)_(COX2)
1
23
75
23
77
16
3564
100
71
100
(COX1);(COX3)
1
22
65
22
66
19
2494
100
68
100
(COX1);(COX4)
1
15
56
17
57
81
1329
100
70
88
(COX1);(COX5B)
1
15
55
17
57
86
1239
100
65
88
(COX1);(COX6A)
1
14
54
17
59
30
358
100
61
82
(COX1);(COX7a)
1
16
56
17
59
25
257
100
68
94
(COX1);(COX7B)
1
15
55
15
57
82
331
100
69
100
(COX1);(COX7C)
1
16
56
17
59
30
1700
100
62
94
(COX1);(COX8)
1
15
55
15
57
42
1043
100
67
100
(COX2_TM)_(COX2);(COX4)
1
13
54
17
57
72
860
100
70
76
(COX2_TM)_(COX2);(COX5A)
1
16
56
17
59
36
276
100
64
94
(COX2_TM)_(COX2);(COX6B)
1
17
58
17
59
41
957
100
62
100
(COX2_TM)_(COX2);(COX6C)
1
16
57
17
59
41
1457
100
68
94
(COX3);(COX5B)
1
15
55
17
57
86
889
100
65
88
(COX3);(COX6A)
1
17
57
17
59
6
1606
100
58
100
(COX3);(COX6B)
1
17
58
17
59
43
245
100
64
100
(COX3);(COX7a)
1
16
56
17
59
25
1302
100
68
94
(COX4);(COX5A)
1
15
55
17
57
81
1257
100
67
88
(COX4);(COX6C)
1
13
54
17
57
74
399
100
70
76
(COX4);(COX7B)
1
15
55
15
57
81
1436
100
69
100
(COX4);(COX8)
1
15
55
15
57
42
323
100
67
100
(COX5A);(COX5B)
1
12
52
17
56
86
165
100
67
71
(COX5A);(COX6C)
1
15
55
17
57
73
607
100
65
88
(COX6A);(COX6B)
1
14
54
17
59
30
207
100
57
82
(COX7C);(COX8)
1
15
55
15
57
42
707
100
65
100
(CP12);(Gp_dh_N)_(Gp_dh_C)
1
6
7
7
10
38
695
86
71
86
(CP12);(Gp_dh_N)_(Gp_dh_C)
2
5
6
7
10
38
274
83
83
71
(Cpn10);(Cpn60_TCP1)
1
11
17
12
18
34
412
100
88
92
(CRCB);(fn3)
1
5
12
5
12
36
381
75
100
100
(Cullin)_(Cullin_Nedd8);(zf-rbx1)
1
7
7
7
7
10
1959
100
100
100
(F-box-like);(Skp1_POZ)_(Skp1)
1
6
7
6
7
21
1028
100
57
100
(CybS);(Fer2_3)_(Fer4_17)
1
6
41
6
42
37
735
100
100
100
(CybS);(Sdh_cyt)
1
6
41
6
42
27
1519
100
100
100
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_17)
1
8
51
8
52
10
2566
100
100
100
(Fer2_3)_(Fer4_17);(Sdh_cyt)
1
8
51
8
52
19
1596
100
100
100
(Cys_knot);(Hormone_6)
1
5
7
5
7
10
2132
100
100
100
(Cystatin);(Peptidase_C1)
1
6
7
6
7
11
894
100
100
100
(CytoC_RC);(Photo_RC)
1
13
34
13
37
21
1671
100
94
100
(CytoC_RC);(Photo_RC)
2
13
34
13
37
21
2540
100
97
100
(CytoC_RC);(PRCH)_(PRC)
1
9
29
12
36
45
308
100
100
75
(LHC);(Photo_RC)
1
6
7
6
7
30
635
100
86
100
(LHC);(Photo_RC)
2
6
7
6
7
39
529
100
86
100
(LHC);(Photo_RC)
3
6
7
6
7
39
278
100
86
100
(LHC);(Photo_RC)
4
6
7
6
7
39
315
100
86
100
(LHC);(Photo_RC)
5
5
6
6
7
39
377
100
83
83
(LHC);(PRCH)_(PRC)
1
5
6
6
7
39
316
100
83
83
(Photo_RC);(PRCH)_(PRC)
1
23
131
23
137
38
1618
100
97
100
(Photo_RC);(PRCH)_(PRC)
2
23
131
23
137
38
2677
100
98
100
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)
1
18
47
18
51
16
766
100
57
100
(Cytochrom_B559);(Photo_RC)
1
18
46
18
51
3
471
100
61
100
(Cytochrom_B559);(PsbJ)
1
15
45
15
48
6
380
100
44
100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)
1
16
45
18
50
10
316
100
58
89
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)
2
16
38
18
50
63
1330
100
50
89
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)
1
15
45
15
48
10
376
100
40
100
(Cytochrom_C550);(Photo_RC)
1
13
42
14
46
54
572
100
69
93
(Cytochrom_C550);(Photo_RC)
2
8
33
14
46
31
206
100
70
57
(Cytochrom_C550);(PsbU)
1
12
41
12
45
35
644
100
51
100
(Cytochrom_C550);(PSII)
1
14
41
14
47
54
915
100
68
100
(MSP);(Photo_RC)
1
16
44
16
49
10
707
100
41
100
(MSP);(Photo_RC)
2
15
44
16
49
31
676
100
45
94
(MSP);(PsbU)
1
12
40
12
45
35
521
100
42
100
(MSP);(PSII)
1
16
43
16
49
43
1307
100
47
100
(MSP);(PSII)
2
14
43
16
49
43
769
100
42
88
(MSP);(PSII)
3
13
42
16
49
45
394
74
10
81
(Photo_RC);(PsbH)
1
16
45
16
49
31
271
100
53
100
(Photo_RC);(PsbI)
1
16
45
16
49
10
864
100
38
100
(Photo_RC);(PsbL)
1
16
45
16
49
10
399
100
47
100
(Photo_RC);(PsbL)
2
16
45
16
49
10
257
100
49
100
(Photo_RC);(PsbT)
1
16
45
16
49
42
518
100
49
100
(Photo_RC);(PsbT)
2
12
33
16
49
42
220
100
33
75
(Photo_RC);(PsbX)
1
15
43
15
48
7
602
100
51
100
(Photo_RC);(PSII)
1
18
47
18
51
10
2947
100
64
100
(Photo_RC);(PSII)
2
17
47
18
51
17
814
100
68
94
(PsbH);(PsbX)
1
14
43
15
47
31
299
100
47
93
(PsbH);(PSII)
1
16
47
16
49
61
1879
100
60
100
(PsbI);(PSII)
1
16
43
16
49
61
446
100
40
100
(PsbK);(PSII)
1
17
45
17
50
17
799
100
53
100
(PsbK);(PSII_Ycf12)
1
10
38
10
43
4
490
100
47
100
(PsbK);(Ycf9)
1
16
46
16
49
12
274
100
39
100
(PsbL);(PsbM)
1
15
46
15
48
10
811
100
61
100
(PsbL);(PsbT)
1
16
47
16
49
10
599
100
64
100
(PsbL);(PSII)
1
16
47
16
49
10
596
100
51
100
(PsbM);(PsbT)
1
15
45
15
48
33
218
100
24
100
(PsbU);(PSII)
1
12
38
12
45
35
438
100
47
100
(PsbU);(PSII)
2
12
41
12
45
35
449
100
51
100
(PSII);(Ycf9)
1
16
43
16
49
10
441
100
42
100
(PSII_Ycf12);(Ycf9)
1
10
38
10
43
10
402
100
42
100
(Cytochrom_C);(peroxidase)
1
13
19
14
23
37
558
100
32
93
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)
1
34
71
34
81
10
1604
100
83
100
(Cytochrom_C1);(UCR_14kD)
1
30
63
30
73
34
376
100
81
100
(Cytochrom_C1);(UCR_hinge)
1
30
63
30
73
3
1083
100
81
100
(Cytochrom_C1);(UCR_TM)_(Rieske)
1
22
50
22
65
4
747
100
80
100
(Cytochrom_C1);(UCR_UQCRX_QCR9)
1
27
60
30
73
31
842
100
85
90
(Cytochrom_C1);(UcrQ)
1
30
64
30
73
21
726
100
80
100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)
1
30
63
30
73
26
380
100
81
100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)
1
30
64
30
73
34
1218
100
80
100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)
1
22
51
22
65
49
486
100
78
100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)
2
19
40
22
65
49
814
90
75
86
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)
1
30
63
30
73
21
1004
100
81
100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)
1
26
46
30
73
21
381
87
74
87
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)
1
22
51
22
65
26
877
100
78
100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)
1
27
52
30
73
26
231
100
83
90
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)
1
30
64
30
73
21
826
100
80
100
(UCR_14kD);(UcrQ)
1
27
60
30
73
21
459
100
85
90
(UCR_hinge);(UcrQ)
1
20
41
30
67
21
271
100
88
67
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)
1
22
51
22
65
31
639
100
78
100
(UCR_TM)_(Rieske);(UcrQ)
1
22
51
22
65
12
558
100
78
100
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)
1
19
46
19
56
0
1308
100
78
100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_6-4kD)
1
11
23
14
34
82
321
100
74
79
(UCR_14kD);(UCR_6-4kD)
1
5
5
14
29
86
192
100
0
36
(UCR_6-4kD);(UCR_UQCRX_QCR9)
1
14
27
14
34
79
496
100
63
100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)
1
364
624
383
651
0
419
94
15
95
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)
1
368
635
383
648
0
772
94
15
96
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S5)_(Ribosomal_S5_C)
1
58
58
384
129
4
141
98
14
15
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S5)_(Ribosomal_S5_C)
2
11
11
384
129
4
164
100
36
3
(KOW)_(ribosomal_L24);(Ribosomal_L23)
1
10
10
279
12
80
727
90
30
4
(Ribosom_S12_S23);(Ribosomal_S17)
1
237
476
267
509
3
219
100
22
89
(Ribosomal_L13);(Ribosomal_L20)
1
269
433
280
439
0
522
100
17
96
(Ribosomal_L13);(Ribosomal_L21p)
1
32
129
279
159
39
102
100
9
11
(Ribosomal_L13);(Ribosomal_L21p)
2
5
5
279
159
21
208
100
0
2
(Ribosomal_L13);(Ribosomal_L22)
1
14
14
866
19
21
547
86
21
2
(Ribosomal_L13);(Ribosomal_L3)
1
200
293
862
418
3
294
87
10
23
(Ribosomal_L13);(Ribosomal_L3)
2
5
5
862
418
32
787
80
40
1
(Ribosomal_L13);(Ribosomal_L6)_(Ribosomal_L6)
1
11
71
410
71
32
265
100
1
3
(Ribosomal_L13);(Ribosomal_S18)
1
9
9
231
9
85
2383
89
22
4
(Ribosomal_L14);(Ribosomal_L19)
1
270
436
277
440
0
801
100
15
97
(Ribosomal_L14);(Ribosomal_L3)
1
278
487
864
515
0
242
92
11
32
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)
1
96
234
100
239
5
1094
100
10
96
(Ribosomal_L16);(Ribosomal_L27)
1
108
212
273
261
7
189
100
14
40
(Ribosomal_L16);(Ribosomal_L30)
1
10
10
282
10
88
422
90
30
4
(Ribosomal_L17);(Ribosomal_L3)
1
95
130
274
288
26
112
100
24
35
(Ribosomal_L17);(Ribosomal_L3)
2
33
107
274
288
27
119
99
7
12
(Ribosomal_L17);(Ribosomal_L32p)
1
260
426
268
429
0
349
100
16
97
(Ribosomal_L18p);(Ribosomal_L27)
1
12
13
266
28
0
233
100
8
5
(Ribosomal_L18p);(Ribosomal_L27)
2
10
10
266
28
87
1087
90
30
4
(Ribosomal_L18p);(Ribosomal_L5)_(Ribosomal_L5_C)
1
7
7
256
9
71
216
100
14
3
(Ribosomal_L19);(Ribosomal_L3)
1
268
434
278
439
0
712
100
16
96
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)
1
51
51
208
100
40
206
100
45
25
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_S6)
1
14
14
227
39
17
360
86
7
6
(Ribosomal_L20);(Ribosomal_L21p)
1
270
437
275
440
0
969
100
15
98
(Ribosomal_L20);(Ribosomal_L22)
1
10
10
280
10
86
270
90
30
4
(Ribosomal_L21p);(Ribosomal_L27A)
1
94
128
279
241
40
163
100
21
34
(Ribosomal_L21p);(Ribosomal_S18)
1
9
9
225
9
77
490
89
22
4
(Ribosomal_L22);(Ribosomal_L32p)
1
269
436
280
439
0
468
100
17
96
(Ribosomal_L23);(Ribosomal_L29)
1
269
493
284
499
0
491
100
14
95
(Ribosomal_L27);(Ribosomal_S10)
1
9
9
225
9
76
410
89
22
4
(Ribosomal_L27A);(Ribosomal_L35p)
1
264
427
271
433
0
781
100
16
97
(Ribosomal_L27A);(Ribosomal_L4)
1
271
429
296
442
0
464
100
17
92
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)
1
163
293
188
315
0
262
100
14
87
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)
1
152
268
179
283
0
960
100
14
85
(Ribosomal_L31);(Ribosomal_S13)
1
98
207
168
238
0
401
100
16
58
(Ribosomal_L31);(Ribosomal_S13)
2
7
7
168
238
49
449
100
0
4
(Ribosomal_L31);(Ribosomal_S19)
1
89
178
166
230
9
436
99
20
54
(Ribosomal_L31);(Ribosomal_S19)
2
21
23
166
230
5
388
100
0
13
(Ribosomal_L33);(Ribosomal_L35p)
1
13
17
264
34
31
196
100
0
5
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)
1
176
275
318
380
1
289
98
12
55
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)
2
32
52
318
380
6
334
96
2
10
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)
1
29
43
317
43
56
265
40
5
9
(Ribosomal_S10);(Ribosomal_S14)
1
384
648
398
664
0
789
94
17
96
(Ribosomal_S10);(Ribosomal_S9)
1
63
161
398
317
5
187
98
12
16
(Ribosomal_S11);(Ribosomal_S18)
1
133
369
271
399
0
296
100
7
49
(Ribosomal_S11);(Ribosomal_S7)
1
219
449
410
498
2
240
99
19
53
(Ribosomal_S13);(Ribosomal_S19)
1
380
649
392
661
0
439
94
11
97
(Ribosomal_S14);(Ribosomal_S19)
1
129
156
388
167
10
316
99
20
33
(Ribosomal_S15);(Ribosomal_S17)
1
9
9
271
12
71
367
89
0
3
(Ribosomal_S15);(Ribosomal_S6)
1
15
15
276
15
6
446
87
0
5
(Ribosomal_S16);(Ribosomal_S18)
1
10
10
270
10
84
580
90
0
4
(Ribosomal_S18);(Ribosomal_S5)_(Ribosomal_S5_C)
1
10
10
271
10
82
596
90
0
4
(Ribosomal_S18);(Ribosomal_S6)
1
258
506
272
526
0
925
100
12
95
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)
1
22
22
279
36
2
417
91
9
8
(Ribosomal_S2);(Ribosomal_S8)
1
93
313
269
331
41
260
100
8
35
(Ribosomal_S2);(Ribosomal_S9)
1
13
13
279
13
24
1170
85
0
5
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)
1
294
557
338
594
0
331
94
19
87
(Ribosomal_S4)_(S4);(Ribosomal_S6)
1
31
80
259
199
28
366
5
0
12
(Ribosomal_S4)_(S4);(Ribosomal_S6)
2
10
28
259
199
10
260
4
0
4
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)
1
386
649
400
666
0
571
94
16
96
(Ribosomal_S7);(Ribosomal_S9)
1
349
585
408
622
0
460
93
13
86
(DCP1);(DCP2)_(NUDIX)
1
7
8
7
8
19
1047
100
75
100
(Dehydratase_LU);(Dehydratase_SU)
1
6
13
6
13
55
2718
100
77
100
(Dioxygenase_C);(PCDO_beta_N)_(Dioxygenase_C)
1
6
52
6
52
53
3609
100
100
100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Gar1)
1
5
5
5
5
24
855
100
100
100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Nop10p)
1
10
17
10
17
10
1351
100
100
100
(DNA_RNApol_7kD);(RNA_pol_A_bac)
1
111
205
112
228
0
582
100
52
99
(DNA_RNApol_7kD);(RNA_pol_N)
1
37
38
119
120
40
176
100
45
31
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
91
189
92
208
16
997
99
53
99
(HTH_9)_(RNA_pol_Rpc82)_(TFIIE_alpha);(RNA_pol_3_Rpc31)
1
11
11
11
11
66
1483
100
82
100
(RNA_pol_3_Rpc31);(RNA_pol_Rpc34)
1
9
9
11
11
66
537
100
78
82
(RNA_pol_A_bac);(RNA_pol_L_2)
1
111
207
112
228
4
2026
100
61
99
(RNA_pol_A_bac);(RNA_pol_N)
1
111
205
112
228
3
1113
100
69
99
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
84
177
85
200
21
1695
99
71
99
(RNA_pol_A_bac);(RNA_pol_Rpb8)
2
5
5
112
149
39
207
100
80
4
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
91
187
92
208
22
433
99
63
99
(RNA_pol_L_2);(RNA_pol_Rpb8)
1
31
117
112
160
57
194
99
55
28
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
84
180
85
200
26
1310
99
58
99
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
91
189
92
208
37
1536
99
71
99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
117
164
118
165
10
1628
99
62
99
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)
1
28
67
84
99
45
275
99
43
33
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)
1
13
13
13
13
30
1694
100
85
100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
56
146
70
174
49
357
99
63
80
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
69
166
70
185
35
960
99
49
99
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
70
166
70
186
44
1545
99
69
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
70
167
70
186
54
9191
99
60
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)
1
24
59
62
99
51
217
98
42
39
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)
1
70
167
70
186
4
2107
99
69
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
69
164
70
186
4
1902
99
68
99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)
1
69
166
70
186
29
1482
99
68
99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)
1
60
105
62
119
5
596
99
47
97
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(SHS2_Rpb7-N)_(S1)
1
20
21
69
91
17
250
100
38
29
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)
1
72
117
73
131
2
2058
99
48
99
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)
1
67
110
69
127
4
440
98
44
97
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)
1
10
39
10
39
42
1390
100
67
100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)
2
9
38
10
39
42
609
100
66
90
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)
1
10
33
10
33
16
4540
100
94
100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)
2
10
33
10
33
51
1304
100
94
100
(Fer4_NifH);(Oxidored_nitro)
1
6
8
7
10
10
428
100
75
86
(Fer4_NifH);(Oxidored_nitro)
2
5
8
7
10
10
517
100
88
71
(DUF5089);(Synaptobrevin)
1
10
15
13
18
10
1147
100
87
77
(DUF5089);(Synaptobrevin)
2
9
12
13
18
10
315
100
92
69
(DUF5089);(Syntaxin)_(SNARE)
1
14
18
14
19
7
1478
100
94
100
(DUF5089);(Syntaxin)_(SNARE)
2
10
14
14
19
19
339
100
86
71
(Synaptobrevin);(Syntaxin)_(SNARE)
1
25
29
25
30
4
1398
100
72
100
(E3_binding);(Pyr_redox_2)_(Pyr_redox_dim)
1
6
6
6
6
22
454
100
17
100
(Ecotin);(Trypsin)
1
12
17
12
17
27
952
100
100
100
(Ecotin);(Trypsin)
2
10
15
12
17
27
512
93
100
83
(Gla)_(EGF)_(FXa_inhibition);(Trypsin)
1
9
74
11
85
38
901
95
97
82
(ECR1_N)_(EXOSC1);(RNase_PH)_(RNase_PH_C)
1
11
13
15
17
14
762
100
85
73
(ECR1_N)_(EXOSC1);(RNase_PH)_(RNase_PH_C)
3
5
7
15
17
23
950
100
57
33
(EF-hand_7);(Lectin_leg-like)
1
6
9
6
9
82
763
100
100
100
(EF-hand_7)_(EF-hand_7);(Myosin_head)_(IQ)
1
6
6
6
6
45
1145
100
50
100
(EGF);(Recep_L_domain)_(Furin-like)_(Recep_L_domain)_(GF_rec ep_IV)
1
8
9
8
9
29
1430
100
100
100
(EGF)_(FXa_inhibition);(Trypsin)
1
12
26
12
26
38
876
100
100
100
(eIF_4EBP);(IF4E)
1
9
12
12
20
0
1000
100
100
75
(eIF-1a);(Ribosom_S12_S23)
1
12
12
12
12
10
429
92
25
100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)
1
119
133
127
135
8
493
71
6
94
(KH_2)_(Ribosomal_S3_C);(S10_plectin)
1
119
133
119
133
0
881
71
6
100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)
1
7
7
11
10
52
379
86
29
64
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)
1
131
145
138
145
2
460
72
9
95
(Ribosom_S12_S23);(Ribosomal_S30)
1
105
119
111
119
10
458
68
8
95
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)
1
43
43
134
50
32
361
79
0
32
(Ribosomal_L7Ae);(S10_plectin)
1
25
25
119
30
3
292
72
0
21
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)
1
9
9
9
9
31
568
78
11
100
(Ribosomal_S11);(Ribosomal_S26e)
1
117
131
117
131
10
1108
70
7
100
(Ribosomal_S11);(Ribosomal_S28e)
1
50
50
136
61
4
291
94
4
37
(Ribosomal_S11);(Ribosomal_S3Ae)
1
130
144
133
146
5
861
74
8
98
(Ribosomal_S13);(Ribosomal_S19e)
1
127
141
132
141
2
433
72
8
96
(Ribosomal_S13);(Ribosomal_S25)
1
122
136
126
138
0
462
71
7
97
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)
1
22
22
137
23
35
244
77
9
16
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)
1
133
147
133
147
0
707
73
7
100
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)
1
60
60
130
70
27
199
95
8
46
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)
1
114
128
137
130
10
194
70
8
83
(Ribosomal_S14);(S10_plectin)
1
113
127
119
129
0
290
70
6
95
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)
1
133
147
135
147
5
716
73
9
99
(Ribosomal_S17e);(Ribosomal_S3Ae)
1
27
27
128
29
4
220
100
7
21
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
11
11
11
11
10
529
82
18
100
(Ribosomal_S19e);(Ribosomal_S9)
1
112
125
132
129
28
228
71
8
85
(Ribosomal_S21e);(Ribosomal_S27e)
1
95
109
126
111
10
360
68
8
75
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)
1
124
138
126
138
2
1315
72
8
98
(Ribosomal_S21e);(Ribosomal_S8)
1
120
134
126
134
0
263
72
8
95
(Ribosomal_S24e);(Ribosomal_S4)_(S4)
1
68
82
80
83
8
229
61
7
85
(Ribosomal_S25);(Ribosomal_S7)
1
125
139
126
139
4
597
71
7
99
(Ribosomal_S26e);(Ribosomal_S28e)
1
9
9
116
15
44
227
56
11
8
(Ribosomal_S26e);(Ribosomal_S3Ae)
1
114
128
117
131
10
256
71
6
97
(Ribosomal_S27e);(Ribosomal_S7e)
1
90
104
127
110
29
226
69
9
71
(Ribosomal_S27e);(Ribosomal_S8)
1
129
143
133
143
10
482
73
8
97
(Ribosomal_S28e);(Ribosomal_S7)
1
135
149
137
149
0
1125
73
7
99
(Ribosomal_S30);(Ribosomal_S4)_(S4)
1
70
84
72
84
0
507
61
8
97
(Ribosomal_S7e);(Ribosomal_S8)
1
130
144
131
144
2
465
73
8
99
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
11
11
11
11
10
283
82
18
100
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)
1
110
124
115
124
4
1033
70
7
96
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)
1
112
126
115
126
0
1515
71
8
97
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)
1
112
126
117
128
6
534
71
8
96
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)
1
131
145
133
145
6
533
74
8
98
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )
1
120
134
128
134
5
310
72
8
94
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)
1
8
8
8
8
11
261
88
25
100
(Enterotoxin_a);(Enterotoxin_b)
1
5
15
5
15
61
389
100
67
100
(Ephrin);(Ephrin_lbd)
1
10
10
10
10
27
1100
100
100
100
(EpoR_lig-bind)_(fn3);(Hormone_1)
1
7
17
7
17
20
1189
100
100
100
(eRF1_1)_(eRF1_2)_(eRF1_3);(GTP_EFTU)_(GTP_EFTU_D2)_(GTP_EFT U_D3)
1
5
5
5
5
13
1556
100
60
100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)
1
15
32
15
32
10
1737
100
88
100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)
2
13
30
15
32
27
841
100
97
87
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_8)
1
8
18
8
18
25
2688
100
94
100
(PPTA)_(PPTA)_(PPTA)_(PPTA)_(PPTA);(Prenyltrans)_(Prenyltran s)_(Prenyltrans)_(Prenyltrans)_(Prenyltrans)
1
6
79
6
79
19
3063
94
100
100
(FGF);(Ig_3)_(I-set)
1
9
11
9
11
21
1425
100
100
100
(Fibrillarin);(Nop)
1
7
9
7
9
6
1575
100
78
100
(Nop);(Ribosomal_L7Ae)
1
8
10
8
10
26
604
100
80
100
(Filo_glycop);(TLV_coat)
1
15
29
15
29
15
2430
97
52
100
(Filo_glycop);(TLV_coat)
2
15
29
15
29
23
469
79
48
100
(Filo_glycop);(TLV_coat)
3
15
29
15
29
23
419
79
48
100
(Fimbrial);(PapD_N)_(PapD_C)
1
14
16
14
16
10
1636
100
88
100
(PapC_N)_(Usher)_(PapC_C);(PapD_N)_(PapD_C)
1
5
5
5
5
26
1039
100
40
100
(FKBP_C);(FRB_dom)
1
8
10
8
10
40
352
100
20
100
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)
1
24
24
26
25
12
884
100
8
92
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)
2
12
12
26
25
14
866
100
8
46
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_propep)_(Flavi_M)
1
5
6
5
6
63
366
100
0
100
(Flu_PA);(Flu_PB1)
1
16
19
16
19
3
7786
100
74
100
(Flu_PA);(Flu_PB2)
1
14
17
14
17
24
2103
100
71
100
(Flu_PB1);(Flu_PB2)
1
14
18
14
18
10
5688
100
78
100
(Inhibitor_I9);(Peptidase_S8)
1
8
12
10
13
14
1201
100
100
80
(F-protein);(SH3_1)
1
5
7
5
7
13
642
100
100
100
(FXa_inhibition);(Trypsin)
1
18
154
18
176
35
906
96
97
100
(Kunitz_BPTI);(Trypsin)
1
40
95
42
96
0
670
100
94
95
(Serpin);(Trypsin)
1
10
10
14
15
23
1094
100
100
71
(G-alpha);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
6
7
7
7
41
1247
100
100
86
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
39
57
39
57
10
2193
100
67
100
(G-alpha);(RGS)
1
9
9
9
9
33
893
100
11
100
(Gamma-thionin);(GP120)
1
5
6
6
10
10
707
100
17
83
(GP120);(V-set)_(C1-set)
1
45
67
156
221
10
280
99
64
29
(GP120);(V-set)_(C1-set)
2
30
41
156
221
4
850
98
51
19
(GP120);(V-set)_(C1-set)
3
21
44
156
221
3
315
93
16
13
(GP120);(V-set)_(C1-set)
4
20
22
156
221
0
627
100
41
13
(GP120);(V-set)_(C1-set)
5
14
33
156
221
56
296
94
15
9
(GP120);(V-set)_(C1-set)
6
12
26
156
221
49
557
100
27
8
(GP120);(V-set)_(C1-set)
7
9
12
156
221
67
283
0
0
6
(GP120);(V-set)_(C1-set)
8
6
21
156
221
72
308
95
38
4
(GDNF)_(GDNF);(TGF_beta)
1
5
5
5
5
23
776
100
100
100
(Glyco_transf_7N)_(Glyco_transf_7C);(Lys)
1
5
13
5
13
68
610
100
23
100
(GP120);(GP41)
1
40
65
40
67
16
2426
98
40
100
(GP120);(GP41)
2
18
31
40
67
16
216
81
16
45
(GP41);(V-set)_(C1-set)
1
31
50
65
89
0
444
98
42
48
(GP41);(V-set)_(C1-set)
2
8
10
65
89
79
292
100
20
12
(GP41);(V-set)_(C1-set)
3
5
6
65
89
0
250
67
33
8
(GP120);(ig)_(C2-set)
1
9
10
9
10
56
1001
100
40
100
(GP120);(V-set)
1
5
5
11
15
43
1084
100
0
45
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosom_ S12_S23)
1
8
11
12
12
10
297
100
0
67
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)
1
39
39
102
42
3
261
97
23
38
(Ribosomal_L10);(Ribosomal_L16)
1
10
10
109
10
85
1212
90
30
9
(Ribosomal_L10);(Ribosomal_S18)
1
9
9
91
9
85
240
89
22
10
(Ribosomal_L16);(Ribosomal_L25p)
1
133
159
149
169
24
385
100
20
89
(Ribosomal_S11);(Ribosomal_S21)
1
136
160
149
176
0
1060
99
19
91
(Ribosomal_S18);(Ribosomal_S21)
1
107
131
149
156
0
257
98
19
72
(Ribosomal_S2);(Ribosomal_S21)
2
7
7
149
16
75
242
86
0
5
(Ribosomal_S21);(Ribosomal_S6)
1
9
9
149
12
85
222
89
0
6
(Ribosomal_S21);(Ribosomal_S9)
1
7
7
149
7
78
236
86
0
5
(Colicin_Pyocin);(HNH)
1
10
19
10
20
58
769
100
63
100
(LON_substr_bdg)_(Yippee-Mis18);(MMS1_N)_(CPSF_A)
1
11
14
11
14
82
2369
100
50
100
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)
1
11
11
18
15
19
1659
100
82
61
(HECT);(ubiquitin)
1
6
6
9
10
51
834
83
83
67
(Hemagglutinin);(V-set)_(C1-set)
1
10
11
87
92
10
581
100
27
11
(Hemagglutinin);(V-set)_(C1-set)
2
7
8
87
92
35
273
100
38
8
(Hemagglutinin);(V-set)_(C1-set)
3
7
9
87
92
6
501
89
22
8
(Hemagglutinin);(V-set)_(C1-set)
5
5
7
87
92
10
691
100
14
6
(Hemagglutinin);(V-set)_(C1-set)
4
6
6
87
92
38
508
100
67
7
(Hemagglutinin);(V-set)_(C1-set)
6
5
5
87
92
54
535
60
60
6
(Histone);(PHD)_(PHD)
1
5
9
8
14
50
968
100
100
62
(Hormone_recep);(SRC-1)
1
13
21
52
260
10
666
100
95
25
(Hpt);(Response_reg)
1
5
7
6
8
10
730
100
100
83
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)_(W2)
1
6
7
6
7
33
1184
100
29
100
(IGFBP);(Insulin)
1
5
5
5
5
58
820
100
100
100
(Inhibitor_I42);(Peptidase_C1)
1
5
5
6
6
26
1074
100
100
83
(Ion_trans_2);(V-set)_(C1-set)
1
6
54
7
63
0
470
96
46
86
(Ion_trans_2);(V-set)_(C1-set)
2
6
54
7
63
88
404
96
46
86
(Rad60-SLD);(UQ_con)
1
7
7
12
13
14
568
71
14
58
(Rad60-SLD);(UQ_con)
2
5
6
12
13
47
586
100
83
42
(RanGAP1_C);(UQ_con)
1
6
11
6
11
81
569
100
9
100
(JAB);(JAB)_(MitMem_reg)
1
31
33
31
33
11
3073
100
52
100
(Kazal_1);(Trypsin)
1
9
35
9
35
10
639
100
97
100
(PCRF)_(RF-1);(Ribosomal_L11_N)_(Ribosomal_L11)
1
6
7
19
10
42
292
100
29
32
(Ribosom_S12_S23);(RRF)
1
6
8
10
8
10
453
100
0
60
(Ribosomal_L7Ae);(Ribosomal_S27)
1
47
61
52
66
3
517
61
8
90
(Ribosomal_S4)_(S4);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_ S4_C)
1
64
78
76
78
10
388
59
9
84
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)
1
48
62
57
62
10
475
50
6
84
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)
1
53
67
56
67
22
535
52
7
95
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)
1
52
66
58
68
36
314
52
6
90
(Kinesin);(Tubulin)_(Tubulin_C)
1
20
20
43
43
29
651
100
30
47
(Kinesin);(Tubulin)_(Tubulin_C)
2
16
16
43
43
29
636
100
38
37
(Kunitz_legume);(Trypsin)
1
7
10
8
11
30
995
100
70
88
(Ran_BP1);(Ras)
1
12
44
12
44
22
2101
100
86
100
(Lys);(tRNA_anti-codon)
1
5
5
5
5
86
864
100
0
100
(Lys);(V-set)
1
5
23
25
58
75
526
100
22
20
(Lys);(V-set)
2
5
23
25
58
77
382
100
22
20
(Lys);(V-set)_(C1-set)
1
5
14
14
25
84
518
100
14
36
(Lys);(V-set)_(C1-set)
2
5
14
14
25
84
391
100
14
36
(MCR_alpha_N)_(MCR_alpha);(MCR_beta_N)_(MCR_beta)
1
6
22
7
23
47
2201
100
100
86
(MCR_alpha_N)_(MCR_alpha);(MCR_beta_N)_(MCR_beta)
2
5
19
7
23
47
1213
100
100
71
(MCR_alpha_N)_(MCR_alpha);(MCR_gamma)
1
5
18
7
23
47
2441
100
100
71
(MCR_beta_N)_(MCR_beta);(MCR_gamma)
1
7
23
7
23
47
2596
100
100
100
(MeMO_Hyd_G);(Phenol_Hydrox)
1
5
29
5
33
51
1392
100
100
100
(MeMO_Hyd_G);(Phenol_Hydrox)_(YHS)
1
5
29
5
33
10
2150
100
100
100
(MmoB_DmpM);(Phenol_Hydrox)_(YHS)
1
5
18
5
19
17
1822
100
94
100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)
1
15
69
15
75
10
4697
100
100
100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)
2
7
32
15
75
10
424
100
100
47
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)
1
128
178
128
178
10
2628
100
90
100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)
2
19
22
128
178
21
382
14
9
15
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)
3
9
10
128
178
23
324
0
0
7
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)
5
6
7
128
178
53
294
14
14
5
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)
6
5
9
128
178
56
264
0
0
4
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)
4
6
11
128
178
54
300
18
9
5
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)
1
30
40
39
49
10
320
95
22
77
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)
1
18
26
39
43
50
265
92
19
46
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)
2
5
7
39
43
61
453
100
57
13
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)
1
28
32
39
45
20
370
94
22
72
(Phenol_Hydrox)_(YHS);(TmoB)
1
8
37
8
39
52
1323
100
100
100
(MoaE);(ThiS)
1
6
7
9
10
19
980
100
100
67
(Neur_chan_LBD);(Toxin_TOLIP)
1
5
7
6
15
24
711
100
71
83
(NHase_alpha);(NHase_beta)
1
8
46
9
56
16
3087
100
100
89
(NHase_alpha);(NHase_beta)
2
5
31
9
56
29
296
16
58
56
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)
1
11
40
23
105
19
3507
100
100
48
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)
2
9
33
23
105
11
820
94
64
39
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)
3
8
39
23
105
11
3883
100
64
35
(OTCace_N)_(OTCace);(PyrI)_(PyrI_C)
1
8
60
9
84
45
672
100
98
89
(OTU);(ubiquitin)
1
12
14
13
14
10
1021
100
93
92
(Pacifastin_I);(Trypsin)
1
7
7
7
7
10
903
100
100
100
(PALP);(Trp_syntA)
1
7
67
12
100
24
1321
100
88
58
(PAS_11);(PAS_3)
1
6
16
7
17
74
947
75
62
86
(PAS_11);(PAS_3)
2
5
15
7
17
75
361
0
0
71
(PBD);(Ras)
1
6
7
6
8
16
1127
100
71
100
(Peptidase_C12);(ubiquitin)
1
6
8
6
8
19
1106
100
88
100
(Peptidase_C48);(Rad60-SLD)
1
11
15
11
15
14
1028
100
80
100
(Peptidase_M10);(TIMP)
1
8
9
8
9
39
1075
100
89
100
(Peptidase_S8);(potato_inhibit)
1
11
29
11
29
32
835
100
100
100
(Pico_P1A)_(Rhv);(Rhv)
1
10
15
14
19
39
1714
93
7
71
(Pico_P1A)_(Rhv);(Rhv)
2
6
7
14
19
72
2136
86
0
43
(PKI);(Pkinase)
1
17
180
17
249
77
954
96
77
100
(PKI);(Pkinase)
2
12
181
17
249
0
389
0
0
71
(Pkinase);(Pkinase_Tyr)
1
5
5
8
9
26
798
80
0
62
(Plexin_cytopl);(Ras)
1
5
5
6
6
40
676
100
100
83
(Plug_translocon)_(SecY);(Sec61_beta)
1
10
13
11
14
10
1134
85
85
91
(Plug_translocon)_(SecY);(SecE)
1
12
15
12
15
17
1587
87
87
100
(Polyketide_cyc2);(PP2C)
1
12
29
16
35
10
869
97
93
75
(Ras);(RasGEF_N)_(RasGEF)
1
5
43
7
50
16
1632
100
47
71
(Ras);(RBD-FIP)
1
7
8
8
10
32
523
100
75
88
(Ras);(Rho_GDI)
1
6
6
7
7
53
1261
100
100
86
(Ras);(RhoGAP)
1
7
7
7
7
19
1099
100
100
100
(Ras);(RhoGEF)_(PH)
1
6
7
6
7
22
1505
100
100
100
(Rhv);(VP4_2)
1
17
27
22
33
13
584
100
70
77
(Rhv);(VP4_2)
2
13
20
22
33
65
240
100
65
59
(Rhv);(VP4_2)
3
9
11
22
33
16
677
91
36
41
(Rhv);(Rhv)_(Rhv)
1
8
16
13
21
50
960
100
69
62
(Rhv);(Rhv)_(Rhv)
2
6
6
13
21
67
2897
100
83
46
(Rhv);(Rhv)_(Rhv)
3
6
6
13
21
76
1270
100
83
46
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)
1
129
143
135
143
2
761
73
10
96
(Ribosomal_L37ae);(Ribosomal_L7Ae)
1
12
12
139
15
58
259
67
0
9
(Ricin_B_lectin)_(Ricin_B_lectin);(RIP)
1
10
39
10
39
28
1546
100
95
100
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)
1
13
50
13
50
20
1775
100
96
100
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)
2
8
16
13
50
24
312
100
100
62
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)
1
44
75
49
84
11
998
100
59
90
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
23
60
23
60
80
1937
100
88
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
2
21
57
23
60
80
255
100
93
91
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (RNA_pol_Rpb6)
1
13
28
22
53
84
161
100
96
59
(RnaseA);(V-set)
1
7
12
7
12
89
581
100
75
100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)
1
23
50
23
51
9
1753
100
90
100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)
2
22
48
23
51
9
664
98
85
96
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)
3
7
11
23
51
47
267
100
82
30
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)
1
19
171
22
226
12
2615
100
85
86
(Sec1);(Vps16_C)
1
5
5
5
5
28
2079
100
80
100
(Squash);(Trypsin)
1
7
10
7
10
33
812
100
100
100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)
1
5
9
5
9
43
626
100
44
100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)_(C1-set)
1
7
9
14
12
19
689
100
44
50
(Stathmin);(Tubulin)_(Tubulin_C)
1
13
115
13
123
56
656
100
79
100
(Stathmin);(Tubulin)_(Tubulin_C)
2
13
114
13
123
56
1538
100
78
100
(Stathmin);(Tubulin)_(Tubulin_C)
3
11
112
13
123
3
778
100
76
85
(T2SSI);(T2SSJ)
1
5
5
5
5
24
757
100
80
100
(T6SS_VipA);(VipB)
1
8
8
8
8
15
2803
100
50
100
(T6SS_VipA);(VipB)
2
5
5
8
8
26
718
100
60
62
(TBP)_(TBP);(TFIIB)_(TFIIB)
1
6
8
6
8
15
1190
100
88
100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)
1
6
9
6
9
19
497
100
78
100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)
2
6
9
6
9
19
621
100
78
100
(ubiquitin);(UCH)
1
15
18
22
32
15
1704
94
83
68
(ubiquitin);(UCH)
2
5
11
22
32
21
1830
100
100
23
(UQ_con);(zf-C3HC4_3)
1
5
5
5
5
26
496
100
20
100
(UQ_con);(zf-RING_2)
1
6
6
7
7
33
542
100
33
86
(ubiquitin);(Viral_protease)
1
5
6
9
12
10
1098
100
83
56
(MHC_II_alpha)_(C1-set);(Stap_Strp_toxin)_(Stap_Strp_tox_C)
1
8
18
12
21
31
680
100
0
67
(DUF3585);(Ras)
1
5
5
5
5
42
913
100
80
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)
1
126
140
137
140
3
765
73
8
92
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)
1
125
139
136
142
1
955
73
9
92
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)
1
113
127
133
133
3
417
72
9
85
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)
1
123
137
129
139
10
664
72
8
95
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)
1
123
137
129
139
3
508
72
8
95
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)
2
110
124
129
139
13
281
73
8
85
(Ribosomal_L13);(Ribosomal_L18A)
1
123
137
136
137
12
680
72
8
90
(Ribosomal_L13);(Ribosomal_L35Ae)
1
128
131
134
144
2
225
79
8
96
(Ribosomal_L13e);(Ribosomal_L15e)
1
129
143
132
143
31
501
73
8
98
(Ribosomal_L13e);(Ribosomal_L18)
1
109
123
132
125
10
229
70
7
83
(Ribosomal_L13e);(Ribosomal_L27A)
1
124
138
125
138
10
1466
72
8
99
(Ribosomal_L13e);(Ribosomal_L29)
1
129
143
130
143
2
900
73
8
99
(Ribosomal_L13e);(Ribosomal_L36e)
1
121
135
132
135
10
641
72
8
92
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
118
132
132
133
31
203
73
9
89
(Ribosomal_L14);(Ribosomal_L24e)
1
140
215
146
215
0
516
82
7
96
(Ribosomal_L15e);(Ribosomal_L29)
1
126
140
146
140
20
355
72
9
86
(Ribosomal_L15e);(Ribosomal_L36e)
1
125
139
134
139
10
529
73
9
93
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
124
138
137
139
10
267
72
9
91
(Ribosomal_L15e);(Ribosomal_L7Ae)
1
139
213
148
213
3
933
82
6
94
(Ribosomal_L16);(Ribosomal_L21e)
1
85
99
128
103
10
201
64
7
66
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)
1
98
112
133
115
49
256
67
6
74
(Ribosomal_L18);(Ribosomal_L27A)
1
124
138
141
141
10
880
72
8
88
(Ribosomal_L18);(Ribosomal_L29e)
1
5
5
120
5
41
496
80
0
4
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)
1
121
135
137
135
10
255
72
7
88
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
130
144
137
144
10
1108
73
8
95
(Ribosomal_L18A);(Ribosomal_L21e)
1
121
135
131
135
1
893
73
8
92
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)
1
128
142
134
142
1
475
73
8
96
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
67
81
134
81
36
243
62
14
50
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)
1
121
135
132
138
21
305
72
9
92
(Ribosomal_L19e);(Ribosomal_S17_N)_(Ribosomal_S17)
1
5
5
93
10
58
271
60
0
5
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)
1
135
209
138
209
0
1227
82
5
98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)
1
118
132
140
132
4
300
72
8
84
(Ribosomal_L21e);(Ribosomal_L29e)
1
116
130
120
130
10
475
71
7
97
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)
1
123
137
131
137
10
594
72
8
94
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)
1
120
134
140
204
10
850
71
7
86
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)
2
10
70
140
204
21
524
100
1
7
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)
1
127
141
131
142
10
215
74
9
97
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)
1
116
130
131
132
6
366
71
8
89
(Ribosomal_L24e);(Ribosomal_L3)
1
130
204
145
204
0
482
81
7
90
(Ribosomal_L24e);(Ribosomal_S6e)
1
50
64
84
68
1
815
58
3
60
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)
1
20
34
154
36
8
342
0
0
13
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)
1
127
141
140
141
10
191
72
9
91
(Ribosomal_L27A);(Ribosomal_L36e)
1
117
131
127
131
10
228
72
8
92
(Ribosomal_L29);(Ribosomal_L37e)
1
94
108
146
111
38
174
73
9
64
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)
1
20
20
120
23
82
481
100
0
17
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)
1
123
137
136
139
37
1031
72
9
90
(Ribosomal_L34e);(Ribosomal_L7Ae)
1
124
138
132
140
10
261
72
8
94
(Ribosomal_L36e);(Ribosomal_L7Ae)
1
124
138
134
138
9
307
72
9
93
(Ribosomal_L37e);(Ribosomal_L39)
1
118
137
139
175
29
220
73
7
85
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)
1
93
107
123
112
10
188
67
6
76
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)
1
132
206
144
206
1
235
81
5
92
(MHC_II_alpha)_(C1-set);(MHC2-interact)
1
5
5
10
11
10
673
100
100
50
(MHC_II_beta)_(C1-set);(MHC2-interact)
1
5
5
10
11
10
683
100
100
50
(TNF);(TNFR_c6)_(TNFR_c6)
1
8
11
8
11
12
805
91
45
100
(RbpA);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)
1
8
11
8
11
81
1218
100
27
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2 _45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
21
36
21
37
11
1877
100
42
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_ Rpb2_7)
1
21
36
21
37
90
7940
100
42
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)
1
17
30
18
31
36
2434
100
60
94
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_ Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)
1
21
36
21
37
80
261
100
42
100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_ Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(Sigma70_r1_2)_(S igma70_r2)_(Sigma70_r3)_(Sigma70_r4)
1
16
27
16
28
81
2038
100
56
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma54_AID)_(Sigma54_CBD)_(Sigma5 4_DBD)
1
5
5
7
6
87
1261
100
60
71
(Herpes_MCP);(Herpes_V23)
1
5
5
5
5
21
550
100
0
100
(Herpes_MCP);(Herpes_V23)
2
5
5
5
5
21
893
100
0
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)
1
71
85
79
85
36
489
61
13
90
(Ribosomal_L22);(Ribosomal_L6e)
1
16
16
79
19
82
107
75
12
20
(Ribosomal_L32e);(Ribosomal_L6e)
1
63
77
79
77
41
519
60
13
80
(Ribosomal_L35Ae);(Ribosomal_L6e)
1
75
89
78
89
40
843
63
12
96
(V-set)_(C1-set);(V-set_2)_(C1-set)
1
59
85
61
86
12
1655
100
88
97
(V-set)_(C1-set);(V-set_2)_(C1-set)
3
5
12
61
86
62
344
0
0
8
(V-set)_(C1-set);(V-set_2)_(C1-set)
2
6
6
61
86
23
373
0
0
10
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _POL_M_15KD)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1 _3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)
1
12
43
13
46
74
1189
100
93
92
(RNA_POL_M_15KD)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_ Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
13
45
13
46
74
8591
100
98
100
(RNA_POL_M_15KD)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_ Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
13
45
13
46
74
2311
100
98
100
(RNA_POL_M_15KD)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_ Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Si gma70_r2)_(Sigma70_r3)_(Sigma70_r4)
1
8
36
9
38
74
3863
100
97
89
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)
1
15
45
15
45
67
1925
100
93
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
22
42
22
42
84
7932
100
76
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)
1
14
37
14
38
78
2771
100
76
100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_ (RNA_pol_Rpb2_7);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigma70_ner) _(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)
1
10
25
10
25
89
2122
100
92
100
(Ribosomal_L23);(Ribosomal_L39)
1
9
69
11
69
38
272
100
1
82
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)
1
21
29
21
29
84
938
100
62
100
(SipA_VBS);(Vinculin)
1
6
6
6
6
10
1157
100
100
100
(A2M_recep)_(NTR);(MG1)_(MG2)_(MG3)_(MG4)_(A2M_BRD)
1
9
12
11
12
20
756
100
100
82
(ACR_tran);(Ank_2)_(Ank_2)_(Ank)
1
5
20
5
20
63
274
100
35
100
(ACR_tran);(Ank_2)_(Ank_2)_(Ank)
2
5
20
5
20
63
791
100
35
100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
1
45
62
57
65
6
571
100
76
79
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
2
40
56
57
65
19
255
100
75
70
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
3
35
48
57
65
19
261
100
79
61
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)
1
46
63
57
65
10
481
100
76
81
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)
2
45
62
57
65
19
547
100
76
79
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)
3
44
60
57
65
19
513
100
78
77
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab)_(T3SS_ATPase_C)
1
60
79
60
80
18
1947
100
76
100
(ATP-synt);(ATP-synt_Eps)
1
29
37
29
37
10
795
100
84
100
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)
1
24
32
26
34
21
659
100
81
92
(ATP-synt);(IATP)
1
8
9
8
9
10
267
100
67
100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(IATP)
1
8
9
8
9
16
813
100
67
100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)
1
13
21
13
21
45
1683
95
52
100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)
2
13
21
13
21
45
1135
95
48
100
(DUF5601)_(VPS9);(Ras)
1
5
7
5
7
24
1042
100
100
100
(EF-hand_7)_(EF-hand_7);(STPPase_N)_(Metallophos)
1
8
10
8
10
59
2075
100
100
100
(EZH2_WD-Binding)_(PRC2_HTH_1)_(preSET_CXC)_(SET);(VEFS-Box)
1
6
8
6
8
17
2659
100
75
100
(VEFS-Box);(WD40)_(WD40)_(WD40)_(WD40)
1
6
8
6
8
17
622
100
75
100
(GP120);(V-set_2)_(C1-set)
1
17
31
25
36
12
994
100
68
68
(GP120);(V-set_2)_(C1-set)
2
7
19
25
36
12
251
0
5
28
(Ribosomal_L10)_(RL10P_insert)_(Ribosomal_60s);(Ribosomal_L1 1_N)_(Ribosomal_L11)
1
9
9
32
9
25
267
44
0
28
(IBN_N)_(Xpo1)_(CRM1_repeat)_(CRM1_repeat_2)_(CRM1_repeat_3) _(CRM1_C);(Ras)
1
13
46
13
47
45
2019
100
80
100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
25
39
25
39
4
801
33
5
100
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)
1
59
73
61
73
34
662
67
7
97
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
25
39
25
39
71
570
33
5
100
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)
1
20
33
25
38
71
255
24
3
80
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)
2
5
5
25
38
75
262
40
0
20
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)
1
25
39
25
39
71
531
33
5
100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)
1
25
39
25
39
10
418
33
5
100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
25
38
25
39
71
252
34
5
100
(S10_plectin);(Stm1_N)_(HABP4_PAI-RBP1)
1
16
30
25
30
74
192
23
7
64
(Lig_chan-Glu_bd)_(Lig_chan);(SBP_bac_3)
1
6
12
6
15
38
1044
100
100
100
(CRPV_capsid);(Rhv)
1
21
21
24
25
6
1219
100
29
88
(CRPV_capsid);(Rhv)
2
5
6
24
25
14
4300
100
50
21
(AAA_23);(SMC_N)
1
5
6
5
6
88
2728
100
100
100
(ATP-synt);(ATP-synt_DE_N)
1
6
6
6
6
21
685
100
67
100
(Ig_6)_(Ig_2)_(Ig_3);(IL1)
1
7
7
7
7
12
1689
100
86
100
(EF-hand_6)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(EzrA)
1
15
16
17
21
35
1540
94
19
88
(EF-hand_6)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(EzrA)
2
13
16
17
21
34
1306
100
25
76
(Cohesin);(Dockerin_1)
1
9
9
16
15
8
908
100
100
56
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)
1
12
12
28
13
22
246
92
8
43
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)
2
11
11
28
13
22
247
91
9
39
(IL2RB_N1)_(fn3);(IL6Ra-bind)_(fn3)
1
5
6
5
6
59
893
100
33
100
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)
1
18
21
18
21
6
2474
100
57
100
(Complex1_30kDa);(Oxidored_q6)
1
18
21
25
25
28
552
100
57
72
(Complex1_30kDa);(Fer4_7)
1
8
8
18
15
88
236
100
62
44
(Complex1_30kDa);(Complex1_49kDa)
1
25
28
25
28
5
2460
100
43
100
(Fer4_7);(Oxidored_q6)
1
17
20
21
24
10
1290
100
60
81
(Complex1_49kDa);(Oxidored_q6)
1
21
24
25
28
7
1297
100
50
84
(Complex1_49kDa);(Fer4_7)
1
21
24
21
24
17
1503
100
50
100
(ASF1_hist_chap);(TAF)
1
6
9
6
9
54
504
100
78
100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)
1
11
11
11
11
28
870
100
82
100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)
2
11
11
11
11
26
1296
100
73
100
(ECR1_N)_(EXOSC1);(Rrp40_N)_(KH_6)
1
11
11
11
11
28
449
100
82
100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)
1
14
14
14
14
34
1195
100
64
100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)
2
14
14
14
14
20
1421
100
64
100
(Inhibitor_I9);(Peptidase_S8)_(PCSK9_C1)_(PCSK9_C2)_(PCSK9_C 3)
1
10
14
10
14
10
1314
100
100
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb1_5)
1
7
8
7
8
45
4533
100
88
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_C)
1
7
8
7
8
41
683
100
88
100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
7
8
7
8
45
932
100
88
100
(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)
1
7
8
7
8
45
509
100
75
100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_C)
1
7
8
7
8
41
1097
100
88
100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
7
8
7
8
45
998
88
88
100
(ABC_tran)_(OB_MalK)_(TOBE_2);(BPD_transp_1)
1
8
17
8
17
12
823
100
94
100
(ABC_tran)_(OB_MalK)_(TOBE_2);(MalF_P2)_(BPD_transp_1)
1
5
12
5
12
58
748
100
92
100
(BPD_transp_1);(MalF_P2)_(BPD_transp_1)
1
5
12
5
12
58
3837
100
83
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_RpbG)
1
5
6
5
6
84
1434
100
83
100
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)
1
15
15
25
24
22
501
100
13
60
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)
2
15
15
25
24
22
571
100
0
60
(eIF-6);(Ribosomal_L14)
1
18
18
24
18
60
830
100
39
75
(eIF-6);(Ribosomal_L24e)
1
5
5
14
6
47
434
100
100
36
(fn3);(HH_signal)
1
5
6
5
6
74
667
100
17
100
(ATP-synt_D);(vATP-synt_AC39)
1
13
13
17
16
12
795
100
0
76
(Ribosomal_L6)_(Ribosomal_L6);(RLI)_(Fer4)_(ABC_tran)_(ABC_t ran)
1
7
7
7
7
52
295
100
0
100
(Med18);(Med8)
1
9
9
9
9
10
607
100
22
100
(Med6);(Med8)
1
9
9
9
9
4
917
100
22
100
(Med11);(Med18)
1
5
6
10
6
11
369
100
33
50
(Med17);(Med8)
1
9
9
9
9
6
1175
100
22
100
(Med17);(Med6)
1
10
11
10
11
4
707
100
18
100
(Clp_N)_(Clp_N)_(AAA)_(AAA_lid_9)_(AAA_2)_(ClpB_D2-small);(M ecA)
1
5
5
5
5
85
1282
100
20
100
(Clp_N)_(Clp_N)_(AAA)_(AAA_lid_9)_(AAA_2)_(ClpB_D2-small);(M ecA)
2
5
5
5
5
85
567
100
0
100
(Img2);(Ribosomal_L4)
1
14
14
16
16
17
974
86
14
88
(Ribosomal_L4);(Ribosomal_L50)
1
13
13
13
13
5
1185
85
15
100
(MRP-L27);(Ribosomal_L23)
1
13
13
13
13
6
1458
85
15
100
(MRP-L27);(MRP-L47)
1
13
13
13
13
15
1736
85
15
100
(MRP-L27);(Ribosomal_L34)
1
13
13
13
13
22
423
85
15
100
(L51_S25_CI-B8);(Ribosomal_L13)
1
13
13
15
15
20
773
85
15
87
(L51_S25_CI-B8);(Ribosomal_L50)
1
10
10
14
14
80
694
90
30
71
(L51_S25_CI-B8);(Ribosomal_L21p)
1
13
13
15
15
3
1285
85
15
87
(L51_S25_CI-B8);(Ribosomal_L22)
1
6
6
15
6
21
298
83
0
40
(Img2);(Ribosomal_L27A)
1
9
9
16
11
87
1386
89
22
56
(KOW)_(Ribosomal_L6e);(Ribosomal_L35Ae)
1
11
11
11
11
21
862
91
9
100
(KOW)_(Ribosomal_L14e);(KOW)_(Ribosomal_L6e)
1
11
11
11
11
21
534
91
9
100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosoma l_L10)_(RL10P_insert)
1
11
11
11
11
56
568
100
0
100
(Ribosomal_L3);(TGS)_(tRNA_SAD)
1
10
10
10
10
82
576
90
20
100
(Img2);(MRP-63)
1
10
10
10
10
72
603
90
20
100
(MRPL52);(Ribosomal_L20)
1
9
9
11
11
81
400
89
22
82
(MRPL52);(Ribosomal_L21p)
1
9
9
11
11
77
633
89
22
82
(MRP-L51);(Ribosomal_L28)
1
9
9
9
9
82
328
89
22
100
(CR6_interact);(MRP-L51)
1
10
10
10
10
76
424
90
20
100
(MRP-L47);(MRP-L51)
1
9
9
9
9
82
242
89
22
100
(MRP-63);(MRPL52)
1
10
10
10
10
72
386
90
20
100
(MRPL52);(Ribosomal_L30)
1
9
9
11
11
81
1038
89
22
82
(PDCD9);(Ribosomal_L23)
1
9
9
9
9
80
511
89
22
100
(MRP_L53);(Ribosomal_S18)
1
10
10
10
10
85
519
90
20
100
(MRP-63);(Ribosomal_S18)
1
8
8
10
8
72
264
88
0
80
(MRP-63);(Ribosomal_L30)
1
9
9
9
9
72
1221
89
22
100
(CR6_interact);(Ribosomal_L28)
1
9
9
9
9
76
375
89
22
100
(CR6_interact);(Ribosomal_L33)
1
9
9
9
9
76
509
89
22
100
(PDCD9);(Ribosomal_L28)
1
9
9
9
9
83
840
89
22
100
(MRP-L47);(PDCD9)
1
9
9
9
9
83
553
89
22
100
(MRP-L51);(Ribosomal_L4)
1
9
9
9
9
82
1824
89
22
100
(CR6_interact);(Ribosomal_L4)
1
9
9
9
9
76
472
89
22
100
(PBP);(Ribosomal_L27A)
1
9
9
9
9
88
273
89
22
100
(PBP);(Ribosomal_L35p)
1
9
9
9
9
80
1103
89
22
100
(PBP);(Ribosomal_L18p)
1
10
10
10
10
87
2540
90
20
100
(PBP);(Ribosomal_S10)
1
10
10
10
10
76
681
90
20
100
(PBP);(Ribosomal_L27)
1
9
9
11
11
87
1808
89
22
82
(PBP);(RF-1)
1
11
11
11
11
77
905
91
18
100
(Ribosomal_L22);(TGS)_(tRNA_SAD)
1
10
10
10
10
78
364
90
20
100
(Ribosomal_L32p);(TGS)_(tRNA_SAD)
1
9
9
10
9
85
264
89
22
90
(MRP_L53);(Ribosomal_L10)
1
9
9
9
9
85
863
89
22
100
(MRP-63);(Ribosomal_L10)
1
9
9
9
9
72
513
89
22
100
(MRP-L28);(MRP-L46)_(NUDIX)
1
12
12
14
14
21
2278
83
17
86
(MRP-L28);(Ribosomal_S10)
1
10
10
10
10
72
1358
90
30
100
(KOW)_(ribosomal_L24);(MRP-L27)
1
9
9
9
9
77
1367
89
22
100
(MRP-L27);(Ribosomal_L28)
1
9
9
9
9
77
496
89
22
100
(MRP-S32);(Ribosomal_L13)
1
9
9
9
9
69
294
89
22
100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L13)
1
12
12
13
12
14
745
83
17
92
(MRP-L51);(Ribosomal_L35p)
1
9
9
9
9
80
394
89
22
100
(L51_S25_CI-B8);(MRP-S32)
1
10
10
10
10
69
652
90
30
100
(MRP-S32);(Ribonucleas_3_3)_(dsrm)
1
9
9
10
9
69
686
89
33
90
(MRP-S32);(Ribosomal_L20)
1
8
8
9
8
69
903
88
25
89
(MRP-S32);(Ribosomal_L22)
1
9
9
9
9
69
423
89
22
100
(L51_S25_CI-B8);(Ribonucleas_3_3)_(dsrm)
1
13
13
13
13
14
1512
85
23
100
(L51_S25_CI-B8);(Ribosomal_L20)
1
9
9
11
11
87
593
89
22
82
(L51_S25_CI-B8);(MRP-63)
1
10
10
10
10
72
381
90
20
100
(MRP-L51);(Ribosomal_L27A)
1
9
9
9
9
82
282
89
22
100
(MRP-63);(Ribosomal_L27A)
1
9
9
9
9
72
529
89
22
100
(RF-1);(Ribosomal_L27A)
1
10
10
10
10
77
1422
90
20
100
(PDCD9);(Ribosomal_L2)_(Ribosomal_L2_C)
1
9
9
9
9
85
783
89
22
100
(CR6_interact);(Ribosomal_L27A)
1
9
9
9
9
76
1089
89
22
100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L20)
1
9
9
10
9
87
381
89
22
90
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L21p)
1
9
9
13
9
77
329
89
22
69
(MRP-L51);(Ribonucleas_3_3)_(dsrm)
1
10
10
10
10
82
373
90
20
100
(MRP-63);(Ribosomal_L16)
1
9
9
9
9
72
335
89
22
100
(MRP-L46)_(NUDIX);(Ribosomal_S10)
1
9
9
9
9
76
383
89
22
100
(Ribosomal_S7);(S1)_(EIF_2_alpha)
1
7
7
7
7
57
665
100
14
100
(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C);(S1)_(EIF_2_alpha)
1
9
9
9
9
54
803
100
11
100
(MRP-S26);(Ribosomal_S6)
1
13
13
13
13
3
983
85
0
100
(DAP3);(Ribosomal_S7)
1
10
10
13
13
85
949
90
0
77
(MRP-S32);(Ribosomal_L21p)
1
8
8
8
8
69
820
88
25
100
(DAP3);(Ribosomal_S9)
1
16
16
16
16
21
1033
88
0
100
(Ribosomal_L16);(Ribosomal_L37)
1
8
8
8
8
76
354
88
25
100
(MRP-S24);(MRP-S33)
1
10
10
10
10
10
553
90
0
100
(Mitoc_L55);(MRP-L46)_(NUDIX)
1
7
7
7
7
70
1277
86
14
100
(MRP-S33);(Ribosomal_S5)_(Ribosomal_S5_C)
1
10
10
10
10
82
946
90
0
100
(RF-1);(Ribosomal_L18p)
1
8
8
8
8
77
451
88
25
100
(Mitoc_L55);(Ribosomal_S10)
1
8
8
8
8
70
926
88
25
100
(MRP-S26);(Ribosomal_S15)
1
12
12
12
12
10
555
83
0
100
(MRP-S22);(Ribosomal_S16)
1
10
10
10
10
68
1073
90
0
100
(L51_S25_CI-B8);(Ribosomal_S16)
1
10
10
10
10
87
635
90
0
100
(MRP-S26);(Ribosomal_S16)
1
13
13
13
13
3
823
85
0
100
(L51_S25_CI-B8);(Ribosomal_S17)
1
10
10
10
10
86
1296
90
0
100
(MRP-S33);(Ribosomal_S14)
1
13
13
13
13
22
1197
85
0
100
(MRP-S26);(Ribosomal_S17)
1
8
8
10
8
75
250
88
0
80
(MRP-S22);(Ribosomal_S18)
1
10
10
10
10
68
1990
90
0
100
(MRP-S26);(Ribosomal_S18)
1
10
10
13
10
75
795
90
0
77
(MRP-S26);(Ribosomal_S18)
2
10
10
13
10
75
589
90
0
77
(MRP-S27);(Ribosomal_S18)
1
8
8
8
8
81
310
100
0
100
(MRP-S23);(Ribosomal_S18)
1
10
10
10
10
80
460
90
0
100
(MRP-S35);(Ribosomal_S18)
1
8
8
10
9
83
228
88
0
80
(MRP-S35);(Ribosomal_S21)
1
10
10
10
10
85
693
90
0
100
(L51_S25_CI-B8);(MRP-S22)
1
10
10
10
10
68
449
90
0
100
(MRP-S23);(MRP-S35)
1
10
10
10
10
82
932
90
0
100
(L51_S25_CI-B8);(MRP-S26)
1
10
10
10
10
75
594
90
0
100
(MRP-S34);(Ribosomal_S16)
1
8
8
13
11
82
232
88
0
62
(MRP-S34);(Ribosomal_S18)
1
10
10
10
10
82
846
90
0
100
(MRP-S22);(MRP-S34)
1
10
10
10
10
68
283
90
0
100
(MRP-S26);(MRP-S34)
1
10
10
10
10
75
766
90
0
100
(MRP-S27);(MRP-S34)
1
8
8
8
8
81
1372
100
0
100
(MRP-S31);(MRP-S33)
1
10
10
10
10
75
702
90
0
100
(MRP-S23);(Ribosomal_S2)
1
10
10
10
10
75
1806
90
0
100
(MRP-S35);(Ribosomal_S2)
1
10
10
10
10
75
1118
90
0
100
(MRP-S24);(MRP-S31)
1
10
10
10
10
75
277
90
0
100
(MRP-S24);(Ribosomal_S5)_(Ribosomal_S5_C)
1
10
10
10
10
82
493
90
0
100
(MRP-S24);(Ribosomal_S9)
1
9
9
10
9
78
217
100
0
90
(MRP-S24);(Ribosomal_S10)
1
10
10
10
10
86
610
90
0
100
(MRP-S24);(Ribosomal_S14)
1
10
10
10
10
86
984
90
0
100
(CHCH);(Ribosomal_S6)
1
10
10
10
10
85
502
90
0
100
(CHCH);(Ribosomal_S7)
1
10
10
13
13
85
896
90
0
77
(CHCH);(Ribosomal_S21)
1
10
10
13
13
7
941
90
0
77
(CHCH);(MRP-S35)
1
10
10
10
10
85
385
90
0
100
(MRP-S31);(Ribosomal_S10)
1
10
10
10
10
75
257
90
0
100
(MRP-S22);(Ribosomal_S5)_(Ribosomal_S5_C)
1
10
10
10
10
68
1174
90
0
100
(MRP-S23);(Ribosomal_S5)_(Ribosomal_S5_C)
1
10
10
10
10
82
620
90
0
100
(L51_S25_CI-B8);(Ribosomal_S5)_(Ribosomal_S5_C)
1
10
10
10
10
82
557
90
0
100
(MRP-S31);(Ribosomal_S14)
1
10
10
10
10
75
624
90
0
100
(Mitoc_L55);(MRP-L28)
1
8
8
8
8
70
732
88
25
100
(V_ATPase_I);(V-ATPase_G)
1
6
6
9
9
52
468
100
0
67
(V_ATPase_I);(V-ATPase_H_N)_(V-ATPase_H_C)
1
6
6
9
9
52
1014
100
0
67
(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_bdg)_(PR P8_domainIV)_(JAB)_(PROCT);(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )_(WD40)_(WD40)
1
13
13
32
13
39
1721
100
15
41
(G10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
11
11
11
11
42
910
100
0
100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C); (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
24
24
28
28
34
1048
100
17
86
(Cwf_Cwc_15);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )
1
28
28
28
28
22
1299
100
7
100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
29
29
29
29
4
1580
100
10
100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
2
10
10
29
29
42
842
100
0
34
(Pro_isomerase);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(W D40)
1
10
10
11
10
42
719
100
0
91
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)
1
56
56
56
56
37
1426
100
29
100
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
1
41
41
56
56
43
501
100
15
73
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
2
26
26
56
56
43
574
100
38
46
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)
1
54
54
54
54
31
1638
100
26
100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)
2
23
23
54
54
31
253
100
22
43
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)
1
51
51
54
51
27
314
100
27
94
(PRP4)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(Rib osomal_L7Ae)
1
8
8
11
8
32
712
100
50
73
(Nop)_(Prp31_C);(Ribosomal_L7Ae)
1
10
10
12
10
25
502
100
50
83
(DIM1);(Nop)_(Prp31_C)
1
10
10
10
10
25
414
100
50
100
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)
1
52
52
52
52
27
623
100
27
100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)
1
43
43
47
43
38
2558
100
26
91
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(P C_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)
1
37
37
42
42
43
778
100
22
88
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_( RPN6_C_helix)
1
9
9
38
25
43
448
100
33
24
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_( RPN6_C_helix)
3
8
8
38
25
43
320
100
25
21
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(DASH_Hsk3)_(Pro t_ATP_ID_OB)_(AAA)_(AAA_lid_3)
1
19
19
20
20
36
3249
100
21
95
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)
1
18
18
40
36
37
319
100
28
45
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)
2
10
10
40
36
37
894
100
30
25
(JAB)_(MitMem_reg);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_ (HEAT_2)_(RPN2_C)
1
32
32
50
38
60
888
100
22
64
(PCI)_(Rpn9_C);(VWA_2)
1
24
24
36
36
31
552
100
21
67
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)
1
29
29
39
36
22
376
100
17
74
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)
2
29
29
39
36
28
454
100
17
74
(Proteasome_A_N)_(Proteasome);(RPN6_N)_(PCI)_(RPN6_C_helix)
1
29
29
44
43
43
662
100
31
66
(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteasome)
1
24
24
27
26
34
428
100
29
89
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(PC_rep)_(P C_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)
1
31
31
46
45
43
1077
100
13
67
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(PC_rep)_(P C_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)
3
6
6
46
45
44
444
100
100
13
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_(RPN6_C_he lix)
1
10
10
30
13
43
518
100
20
33
(Pescadillo_N)_(BRCT_2);(Ribosomal_L30_N)_(Ribosomal_L30)
1
9
9
9
9
89
1113
100
22
100
(eIF-6);(Ribosomal_L3)
1
11
11
22
11
61
267
100
45
50
(MRP-S28)_(TBCA);(Ribosomal_S9)
1
7
7
7
7
81
1290
86
0
100
(DAP3);(MRP-S28)_(TBCA)
1
7
7
7
7
87
1102
86
0
100
(MRP-S28)_(TBCA);(MRP-S31)
1
7
7
7
7
82
1135
86
0
100
(Sgf11_N)_(Sgf11);(zf_C2H2_13)
1
5
10
5
10
10
318
100
90
100
(Calici_coat);(CRPV_capsid)
1
20
20
20
20
7
4578
100
20
100
(Furin-like_2);(ZNRF_3_ecto)
1
9
9
9
9
9
1004
100
89
100
(JAB)_(MitMem_reg);(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)
1
23
23
35
24
60
432
100
9
66
(Complex1_49kDa);(Oxidored_q4)
1
18
18
20
18
25
439
100
33
90
(Complex1_49kDa);(NADHdh)
1
21
21
21
21
21
1143
100
29
100
(NADHdh);(Oxidored_q6)
1
17
17
21
21
21
1214
100
35
81
(Fer4_7);(NADHdh)
1
18
18
18
18
21
704
100
33
100
(Oxidored_q4);(Oxidored_q6)
1
9
9
20
10
25
483
100
22
45
(Acetyltransf_1);(ANAPC3)_(TPR_1)_(NARP1)
1
5
7
6
9
90
3095
100
71
83
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_beta_N)_(TFIIF_beta)
1
17
17
19
17
24
1367
100
6
89
(TBP)_(TBP);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)
1
18
18
19
18
33
506
100
6
95
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosoma l_L10)_(RL10P_insert)_(Ribosomal_60s)
1
7
7
7
7
52
550
29
0
100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosoma l_S30)
1
8
8
15
13
60
267
75
0
53
(AAA_16)_(ORC4_C);(AAA_16)_(ORC5_C)
1
5
5
5
5
10
2690
100
60
100
(Actin);(Dynamitin)
1
7
7
7
7
31
623
100
29
100
(ATP-synt_A);(Mt_ATP-synt_B)
1
10
10
16
13
22
813
100
40
62
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_alpha)
1
15
15
17
17
17
1236
100
0
88
(TFIIF_alpha);(TFIIF_beta_N)_(TFIIF_beta)
1
17
17
17
17
8
2204
100
6
100
(SHS2_Rpb7-N)_(S1);(TFIIE_alpha)_(TF_Zn_Ribbon)
1
6
6
6
6
55
516
100
0
100
(RNA_POL_M_15KD)_(TFIIS_C);(TFIIF_alpha)
1
9
9
15
13
19
237
100
0
60
(bZIP_1)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)
1
17
17
17
17
89
2310
100
12
100
(bZIP_1)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(JAB)_(MitMem_re g)
1
8
8
16
14
60
403
100
12
50
(JIP_LZII)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_ N)_(Proteasome)
1
27
27
27
27
4
695
100
26
100
(bZIP_1)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(JIP_LZII)_(Prot _ATP_ID_OB)_(AAA)_(AAA_lid_3)
1
17
17
17
17
89
3746
100
12
100
(RPN7)_(PCI);(TPR_2)_(PCI)_(Rpn3_C)
1
31
31
31
31
72
1304
100
26
100
(CSN8_PSD8_EIF3K);(TPR_2)_(PCI)_(Rpn3_C)
1
30
30
30
30
66
1870
100
23
100
(JAB)_(MitMem_reg);(TPR_2)_(PCI)_(Rpn3_C)
1
27
27
31
31
72
784
100
11
87
(DSS1_SEM1);(TPR_2)_(PCI)_(Rpn3_C)
1
21
21
30
25
34
983
100
0
70
(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C);( TPR_2)_(PCI)_(Rpn3_C)
1
29
29
29
29
72
607
100
21
100
(MMS1_N)_(CPSF_A);(PHF5)
1
13
13
18
13
10
636
100
8
72
(Fer4_7);(zf-CHCC)
1
10
10
10
10
28
849
100
50
100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(ETC_C1_NDUFA4)
1
10
10
11
10
29
486
100
20
91
(NADHdh);(NADHdh_A3)
1
13
13
13
13
38
664
100
38
100
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)
1
12
12
13
12
54
925
100
33
92
(Proton_antipo_M)_(NADH_dehy_S2_C);(Tim17)
1
11
11
12
11
54
522
100
36
92
(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C);(Tim17)
1
11
11
13
11
64
522
100
36
85
(Complex1_LYR);(ETC_C1_NDUFA4)
1
10
10
11
10
28
480
100
20
91
(NDUF_B5);(NDUFB10)
1
12
12
13
12
24
952
100
42
92
(NDUF_B5);(NDUF_C2)
1
12
12
13
12
24
665
100
42
92
(dNK);(NDUF_C2)
1
11
11
13
11
42
316
100
36
85
(MWFE);(NADHdh)
1
14
14
14
14
30
1506
100
36
100
(GRIM-19);(NADHdh)
1
14
14
14
14
22
881
100
36
100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)
1
13
13
13
13
54
1194
100
38
100
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
13
13
13
13
54
1618
100
38
100
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
13
13
13
13
51
644
100
38
100
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
12
12
13
12
54
810
100
42
92
(dNK);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
12
12
13
12
54
1332
100
33
92
(NDUF_B5);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
11
11
13
12
24
255
100
36
85
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
13
13
13
13
42
1002
100
38
100
(NADHdh_A3);(Oxidored_q4)
1
12
12
13
12
38
362
100
42
92
(NDUF_B5);(Oxidored_q5_N)_(Proton_antipo_M)
1
13
13
13
13
24
1066
100
38
100
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)
1
13
13
14
13
31
648
100
38
93
(Complex1_LYR);(Oxidored_q5_N)_(Proton_antipo_M)
1
13
13
14
14
22
331
100
31
93
(Ndufs5);(Oxidored_q2)
1
14
14
14
14
21
433
100
36
100
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
13
13
14
13
31
953
100
38
93
(Complex1_LYR);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
14
14
14
14
22
1294
100
36
100
(Ndufs5);(Oxidored_q3)
1
12
12
14
12
51
717
100
42
86
(GRIM-19);(NADHdh_A3)
1
12
12
13
12
38
515
100
42
92
(NDUF_B5);(Ndufs5)
1
12
12
13
12
24
873
100
42
92
(Complex1_30kDa);(ETC_C1_NDUFA5)
1
14
14
14
14
7
1317
100
36
100
(Complex1_49kDa);(ETC_C1_NDUFA5)
1
13
13
14
13
34
352
100
38
93
(Complex1_30kDa);(Complex1_LYR)
1
14
14
14
14
28
1019
100
36
100
(Complex1_LYR);(NDUF_B5)
1
12
12
13
12
24
455
100
42
92
(Complex1_30kDa);(ETC_C1_NDUFA4)
1
11
11
11
11
29
1266
100
18
100
(NADH_dh_m_C1);(NDUF_C2)
1
13
13
13
13
42
741
100
38
100
(NDUF_B5);(NDUF_B6)
1
8
8
12
8
77
258
100
12
67
(NDUF_B6);(NDUFB10)
1
8
8
12
12
70
1107
100
12
67
(NDUF_B6);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
8
8
12
12
64
892
100
12
67
(NDUF_B6);(NDUF_B7)
1
8
8
12
8
70
757
100
12
67
(NDUF_B6);(PP-binding)
1
12
12
12
12
25
461
100
42
100
(Complex1_49kDa);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
10
10
10
10
54
780
100
40
100
(Complex1_49kDa);(Oxidored_q2)
1
5
5
15
5
65
273
100
0
33
(Complex1_49kDa);(Oxidored_q5_N)_(Proton_antipo_M)
1
6
6
10
6
66
319
100
0
60
(Complex1_49kDa);(dNK)
1
6
6
10
6
78
462
100
0
60
(Complex1_49kDa);(GRIM-19)
1
13
13
13
13
22
894
100
38
100
(NDUF_B8);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
8
8
8
8
64
1504
100
12
100
(NDUF_B8);(Oxidored_q5_N)_(Proton_antipo_M)
1
7
7
8
7
66
407
100
0
88
(ESSS);(Oxidored_q5_N)_(Proton_antipo_M)
1
12
12
12
12
72
1579
100
42
100
(NDUF_C2);(Ndufs5)
1
5
5
12
5
70
206
100
20
42
(NDUF_C2);(Oxidored_q5_N)_(Proton_antipo_M)
1
8
8
12
8
66
254
100
12
67
(Fer4_7);(NDUFA12)
1
8
8
9
8
33
1770
100
62
89
(Fer4_7);(NADHdh_A3)
1
8
8
8
8
38
293
100
62
100
(Fer4_7);(GRIM-19)
1
9
9
9
9
37
334
100
56
100
(CI-B14_5a);(ETC_C1_NDUFA5)
1
8
8
9
8
83
386
100
12
89
(CI-B14_5a);(GRIM-19)
1
8
8
9
8
9
439
100
12
89
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)
1
12
12
12
12
66
773
100
42
100
(NDUF_B4);(Oxidored_q5_N)_(Proton_antipo_M)
1
13
13
13
13
22
1305
100
38
100
(Complex1_LYR);(NDUF_B12)
1
9
9
9
9
4
462
100
11
100
(Oxidored_q5_N)_(Proton_antipo_M);(Tim17)
1
11
11
12
11
64
227
100
36
92
(NADH_B2);(NDUF_B12)
1
8
8
8
8
7
860
100
12
100
(ESSS);(NDUF_B5)
1
12
12
12
12
24
868
100
42
100
(NADH_oxidored);(NDUF_B5)
1
12
12
12
12
24
502
100
42
100
(CI-B14_5a);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)
1
8
8
9
8
83
220
100
12
89
(Complex1_LYR);(NDUF_B6)
1
12
12
12
12
25
930
100
42
100
(CI-B14_5a);(Complex1_49kDa)
1
9
9
9
9
83
1527
100
22
100
(NDUF_B4);(NDUF_B8)
1
7
7
8
7
75
1844
100
0
88
(Complex1_LYR);(NDUF_B8)
1
7
7
8
7
84
329
100
0
88
(NDUF_B7);(NDUF_B8)
1
6
6
8
6
82
1116
100
0
75
(CI-B14_5a);(Complex1_30kDa)
1
9
9
9
9
83
1262
100
22
100
(ESSS);(NDUFB10)
1
12
12
12
12
31
1431
100
42
100
(NDUF_C2);(NDUFB10)
1
12
12
12
12
31
605
100
42
100
(NADH_oxidored);(NDUFB10)
1
8
8
12
8
74
315
100
12
67
(NDUF_B4);(NDUFB10)
1
12
12
12
12
31
330
100
42
100
(NDUF_B7);(NDUFB10)
1
8
8
13
8
81
433
100
12
62
(dNK);(ESSS)
1
6
6
11
8
58
306
100
50
55
(dNK);(NADH_dh_m_C1)
1
11
11
12
11
58
423
100
45
92
(CI-B14_5a);(Fer4_7)
1
5
5
5
5
83
985
100
40
100
(GRIM-19);(Ndufs5)
1
13
13
13
13
22
1133
100
38
100
(NDUFA12);(Oxidored_q6)
1
12
12
13
12
33
304
100
42
92
(CI-B14_5a);(NDUFA12)
1
8
8
9
8
83
446
100
25
89
(NDUF_B4);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
12
12
13
12
61
860
100
42
92
(NDUF_B7);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
12
12
13
13
24
677
100
33
92
(NADH_B2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
8
8
8
8
7
1471
100
12
100
(NDUF_B12);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
9
9
9
9
4
733
100
11
100
(MWFE);(Oxidored_q3)
1
8
8
13
8
51
243
100
12
62
(GRIM-19);(Oxidored_q3)
1
13
13
13
13
12
659
100
38
100
(Complex1_LYR);(NDUF_B4)
1
12
12
13
12
61
1055
100
42
92
(GRIM-19);(MWFE)
1
13
13
13
13
22
542
100
38
100
(NADH_B2);(NDUF_B7)
1
6
6
8
8
7
687
100
17
75
(NDUF_B12);(PP-binding)
1
8
8
9
8
82
658
100
12
89
(DUF5323);(Ribosomal_L21p)
1
7
7
7
7
3
560
100
57
100
(ArfA);(PCRF)_(RF-1)
1
10
10
10
10
42
1140
100
40
100
(Helicase_C_3)_(ResIII)_(ERCC3_RAD25_C);(Tfb5)
1
9
9
10
9
5
468
100
0
90
(Tfb2)_(Tfb2_C);(Tfb5)
1
10
10
10
10
5
954
100
0
100
(Fcf1);(Ribosomal_S4)_(S4)
1
5
5
5
5
52
632
100
0
100
(Fcf1);(Ribosomal_S8)
1
5
5
5
5
52
318
100
0
100
(EMG1);(Ribosomal_S7)
1
5
5
6
5
69
362
100
0
83
(KH_8)_(KH_1);(Ribosomal_S11)
1
8
8
13
13
51
826
100
25
62
(KH_8)_(KH_1);(Ribosomal_S11)
2
5
5
13
13
69
564
100
0
38
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan);(PMP22_Claudin)
1
6
6
9
7
68
580
100
33
67
(ABC_tran)_(BCA_ABC_TP_C);(LptF_LptG)
1
7
7
7
7
21
968
100
29
100
(CX9C)_(CHCH);(MWFE)
1
9
9
9
9
60
776
100
56
100
(CX9C)_(CHCH);(NADHdh_A3)
1
9
9
9
9
43
952
100
56
100
(CX9C)_(CHCH);(NDUF_C2)
1
9
9
9
9
45
574
100
56
100
(CX9C)_(CHCH);(Ndufs5)
1
9
9
9
9
60
417
100
56
100
(CX9C)_(CHCH);(NADHdh)
1
9
9
9
9
60
245
100
56
100
(CX9C)_(CHCH);(NDUF_B5)
1
9
9
9
9
24
475
100
56
100
(CX9C)_(CHCH);(Oxidored_q5_N)_(Proton_antipo_M)
1
5
5
9
5
75
256
100
20
56
(CX9C)_(CHCH);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
5
5
9
5
63
268
100
20
56
(NDUFA12);(zf-CHCC)
1
9
9
12
9
31
631
100
22
75
(CX9C)_(CHCH);(GRIM-19)
1
9
9
9
9
42
1590
100
56
100
(CI-B14_5a);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_15)_(Molybdop_F e4S4)_(Molybdopterin)_(NADH_dhqG_C)
1
8
8
8
8
83
467
100
25
100
(NAD_binding_10);(Oxidored_q6)
1
8
8
8
8
32
773
100
12
100
(NAD_binding_10);(Oxidored_q4)
1
5
5
7
6
30
273
100
0
71
(NAD_binding_10);(zf-CHCC)
1
8
8
8
8
31
485
100
12
100
(Complex1_LYR);(NAD_binding_10)
1
8
8
8
8
27
500
100
12
100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(NDUFV3)
1
8
8
8
8
74
1028
100
25
100
(2Fe-2S_thioredx);(NDUFV3)
1
8
8
8
8
74
871
100
25
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_15)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(zf-CHCC)
1
8
8
8
8
81
447
100
25
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_15)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(L51_S25_CI-B8)
1
8
8
8
8
84
1175
100
25
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_15)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(NDUFA12)
1
8
8
8
8
87
587
100
25
100
(Complex1_30kDa);(NAD_binding_10)
1
8
8
8
8
32
490
100
12
100
(ETC_C1_NDUFA4);(NAD_binding_10)
1
8
8
8
8
31
311
100
12
100
(Ribosomal_L7Ae);(Stm1_N)
1
6
6
6
6
87
276
50
0
100
(HBS1_N)_(GTP_EFTU)_(GTP_EFTU_D2)_(GTP_EFTU_D3);(Ribosom_S12 _S23)
1
5
5
5
5
33
322
100
0
100
(ATP-synt_A);(ATP-synt_B)
1
7
7
10
10
23
1600
100
0
70
(G-alpha);(HRM)_(7tm_2)
1
8
8
8
8
26
1047
100
0
100
(HRM)_(7tm_2);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(W D40)
1
8
8
8
8
26
269
100
0
100
(G-alpha);(V-set)_(V-set)
1
5
5
5
5
55
535
100
0
100
(Csm2_III-A);(RAMPs)
1
15
15
15
15
22
341
100
0
100
(Csm2_III-A);(RAMPs)
2
14
14
15
15
22
512
100
0
93
(Cas_Cmr3)_(Csm4_C);(RAMPs)
1
7
7
7
7
21
1465
100
0
100