Protein Common Interface Database

Clusters with M>=5,SeqId<90 and pair Pfam Architecture

Pfam Architecture	Cluster#	#CFs/Cluster	#Entries/Cluster	#CFs/Group	#Entries/Group	Minimum Seq Identity	Surface Area	In PDBBA(%)	In PISABA(%)	CFs Cluster/Group(%)
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(CaM_bdg_C0);(AN F_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(NMDAR2_C)	1	8	8	8	8	62	1592	100	38	100
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(CaM_bdg_C0);(AN F_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(NMDAR2_C)	2	8	8	8	8	68	1088	100	38	100
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	10	12	10	12	34	2339	83	83	100
(Complex1_30kDa);(Complex1_49kDa)	1	7	9	10	12	28	2658	78	78	70
(Complex1_30kDa);(Oxidored_q6)	1	7	9	11	13	28	392	78	78	64
(Complex1_49kDa);(Fer4_7)	1	7	9	7	9	34	1211	78	78	100
(Complex1_49kDa);(Oxidored_q6)	1	11	13	11	13	38	1197	77	77	100
(COX1);(COX2_TM)_(COX2)	1	13	51	13	52	33	3541	92	86	100
(COX1);(COX3)	1	11	41	11	42	19	2514	90	85	100
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)	1	20	59	22	62	10	1596	93	92	91
(Cytochrom_C1);(UCR_14kD)	1	15	49	18	53	36	401	98	96	83
(Cytochrom_C1);(UCR_hinge)	1	19	53	19	54	30	1066	91	89	100
(Cytochrom_C1);(UCR_TM)_(Rieske)	1	10	33	14	49	51	783	100	97	71
(Cytochrom_C1);(UCR_UQCRX_QCR9)	1	16	50	19	54	32	840	96	94	84
(Cytochrom_C1);(UcrQ)	1	19	54	19	54	21	723	91	87	100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)	1	13	47	18	53	26	406	100	98	72
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)	1	19	54	19	54	36	1198	91	87	100
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)	1	29	29	35	35	10	369	0	0	83
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	1	10	33	14	49	51	505	100	97	71
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	2	8	30	14	49	51	917	93	97	57
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)	1	18	52	18	53	21	974	90	88	100
(Fer4_7);(Oxidored_q6)	1	7	9	7	9	34	1324	78	78	100
(Ribosomal_S11);(Ribosomal_S28e)	1	21	21	36	36	46	295	24	5	58
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	1	7	23	11	39	45	1631	96	91	64
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	2	7	23	11	39	45	789	96	91	64
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)	1	11	32	18	53	10	397	84	94	61
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)	1	11	28	14	49	71	920	89	86	79
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)	1	6	24	11	31	26	266	100	100	55
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)	1	19	54	19	54	21	816	91	87	100
(UCR_14kD);(UcrQ)	1	15	49	18	53	21	468	98	96	83
(UCR_6-4kD);(UCR_UQCRX_QCR9)	1	6	19	9	22	10	546	95	84	67
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)	1	13	36	14	49	32	645	92	89	93
(Ribosomal_S11);(Ribosomal_S3Ae)	1	73	87	83	97	10	870	26	6	88
(UCR_TM)_(Rieske);(UcrQ)	1	8	25	14	49	65	600	100	96	57
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)	1	17	17	18	18	35	264	35	6	94
(Oxidored_q2);(Oxidored_q4)	1	8	8	8	8	16	397	75	75	100
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	7	7	7	7	32	498	71	71	100
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)	1	22	22	27	27	34	232	32	14	81
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)	1	30	32	31	33	10	211	12	9	97
(Ribosomal_L10)_(Ribosomal_60s);(Ribosomal_L11_N)_(Ribosomal _L11)	1	8	8	8	8	46	267	12	0	100
(Ribosomal_L28);(Ribosomal_L9_N)	1	6	6	9	9	10	296	100	0	67
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)	1	74	88	82	96	10	733	20	6	90
(Ribosomal_S24e);(Ribosomal_S4)_(S4)	1	42	56	43	57	10	232	14	4	98
(Ribosomal_S28e);(Ribosomal_S7)	1	83	97	85	99	10	1145	24	4	98
(Ribosomal_S7e);(Ribosomal_S8)	1	81	95	81	95	10	469	23	5	100
(C1-set);(MHC_I)_(C1-set)	1	109	161	115	203	13	1245	100	98	95
(TBP)_(TBP);(TFIIA)	1	15	16	15	16	36	667	100	25	100
(TFIIA);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	15	16	15	16	34	2109	100	31	100
(Mago_nashi);(RRM_1)	1	10	10	10	10	68	1277	100	100	100
(C1-set);(MHC_I)_(C1-set)	2	10	12	115	203	66	274	0	0	9
(C1-set);(MHC_I)_(C1-set)	3	6	7	115	203	69	282	0	29	5
(C1-set);(MHC_I)_(C1-set)	4	6	10	115	203	90	240	0	0	5
(C1-set);(MHC_I)_(C1-set)	5	5	6	115	203	78	303	0	17	4
(C1-set);(MHC_I)_(C1-set)	6	5	6	115	203	66	399	0	0	4
(C1-set);(MHC_I)_(C1-set)	7	5	6	115	203	69	219	0	0	4
(FGF);(Ig_3)_(I-set)	1	8	8	8	8	33	1374	100	100	100
(Filo_glycop);(TLV_coat)	1	8	10	8	10	34	2351	90	50	100
(Filo_glycop);(TLV_coat)	2	8	10	8	10	34	452	50	40	100
(Filo_glycop);(TLV_coat)	3	8	10	8	10	34	397	50	40	100
(Ig_3)_(C1-set);(V-set)_(C1-set)	1	21	27	21	27	19	1682	100	85	100
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	1	16	16	17	17	33	723	94	0	94
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	2	6	6	17	17	33	880	100	0	35
(Flu_PA);(Flu_PB1)	1	12	13	12	13	10	7495	100	85	100
(Flu_PA);(Flu_PB2)	1	8	9	10	11	35	2045	100	89	80
(Flu_PB1);(Flu_PB2)	1	7	9	10	12	42	5448	78	78	70
(FXa_inhibition);(Trypsin)	1	17	121	17	145	35	887	95	100	100
(ABC_tran)_(TOBE_2);(BPD_transp_1)	1	6	16	6	16	12	821	100	94	100
(IL23);(V-set)_(IL12p40_C)_(fn3)	1	6	6	6	6	88	1008	100	100	100
(G-alpha);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	8	9	8	9	34	1299	100	89	100
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	18	34	18	36	10	2253	100	97	100
(GP120);(V-set)_(C1-set)	1	33	59	109	163	10	925	98	61	30
(GP120);(V-set)_(C1-set)	2	19	34	109	163	35	263	100	71	17
(GP120);(V-set)_(C1-set)	3	10	24	109	163	58	243	0	4	9
(GP120);(V-set)_(C1-set)	4	10	13	109	163	56	300	100	15	9
(GP120);(V-set)_(C1-set)	5	8	23	109	163	50	511	100	26	7
(GP120);(V-set)_(C1-set)	6	7	9	109	163	56	294	100	22	6
(GP120);(V-set)_(C1-set)	7	6	6	109	163	10	388	100	83	6
(GP120);(V-set)_(C1-set)	8	6	6	109	163	58	382	100	100	6
(GP120);(V-set)_(C1-set)	9	5	7	109	163	77	321	86	29	5
(GP120);(V-set)_(C1-set)	10	5	7	109	163	57	768	100	43	5
(EF-hand_8)_(EF-hand_7);(Troponin)	1	6	7	6	7	44	1893	100	100	100
(GP120);(GP41)	1	16	21	16	21	71	2559	95	43	100
(GP120);(GP41)	2	5	6	16	21	71	244	83	17	31
(GP41);(V-set)_(C1-set)	2	5	7	35	65	75	367	100	14	14
(GP120);(ig)_(C2-set)	1	6	6	6	6	82	993	100	17	100
(GP120);(ig)_(C2-set)_(CD4-extracel)	1	14	26	14	26	23	1040	100	62	100
(GP120);(Ig_3)_(C1-set)	1	5	5	9	11	52	256	80	40	56
(GP120);(Toxin_2)	1	6	10	6	10	10	715	100	30	100
(Actin);(Gelsolin)	1	11	29	11	29	10	1216	100	100	100
(Actin);(Gelsolin)	2	6	24	11	29	10	397	0	0	55
(Actin);(Gelsolin)	3	5	23	11	29	80	273	0	0	45
(Actin);(WH2)	1	8	9	8	9	30	962	100	100	100
(Actin);(RPEL)	1	7	7	7	7	31	914	100	100	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosom_ S12_S23)	1	18	18	22	24	10	352	50	0	82
(Activin_recp);(TGF_beta)	1	7	11	12	17	15	772	100	91	58
(Activin_recp);(TGF_beta)	2	7	11	12	17	15	361	91	82	58
(Activin_recp);(TGF_beta)	3	7	8	12	17	41	753	100	50	58
(ETF);(ETF)_(ETF_alpha)	1	9	15	9	15	10	3097	100	100	100
(LON_substr_bdg)_(Yippee-Mis18);(MMS1_N)_(CPSF_A)	1	5	7	5	7	86	2246	100	86	100
(Adaptin_N);(Clat_adaptor_s)	1	5	7	7	9	19	2666	100	100	71
(AdenylateSensor);(CBS)_(CBS)_(CBS)_(CBS)	1	7	21	7	21	22	779	100	100	100
(AdenylateSensor);(AMPKBI)	1	6	20	6	20	22	1987	100	100	100
(AMPKBI);(CBS)_(CBS)_(CBS)_(CBS)	1	7	21	7	21	33	1108	100	100	100
(Pico_P1A)_(Rhv);(Rhv)	1	8	13	9	15	15	1695	62	8	89
(Pico_P1A)_(Rhv);(Rhv)	2	7	12	9	15	10	1173	58	8	78
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)	1	11	11	13	13	16	1659	100	82	85
(Plug_translocon)_(SecY);(SecE)	1	15	17	17	19	21	1594	82	65	88
(Hormone_recep);(SRC-1)	1	10	17	51	219	25	677	100	100	20
(Peptidase_C12);(ubiquitin)	1	8	10	8	10	11	1133	100	100	100
(IBN_N)_(Xpo1)_(B56)_(CRM1_C);(Ras)	1	5	18	5	20	45	2053	100	100	100
(Ran_BP1);(Ras)	1	14	38	14	38	22	2110	100	97	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	1	7	15	7	15	42	420	100	93	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	2	7	15	7	15	42	684	100	93	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	3	5	13	7	15	47	379	0	0	71
(Plug_translocon)_(SecY);(Sec61_beta)	1	7	9	14	16	69	1332	67	56	50
(PCRF)_(RF-1);(Ribosomal_L11_N)_(Ribosomal_L11)	1	6	6	7	8	43	268	100	33	86
(Amidase);(GatB_N)_(GatB_Yqey)	1	6	12	6	12	37	1326	100	100	100
(Amidase);(Glu-tRNAGln)	1	5	11	5	11	25	2486	100	100	100
(GatB_N)_(GatB_Yqey);(Glu-tRNAGln)	1	5	11	5	11	25	1786	100	100	100
(Ribosomal_L13);(Ribosomal_L3)	1	76	90	94	167	10	409	20	7	81
(Ribosomal_L13);(Ribosomal_L3)	2	10	68	94	167	16	249	100	3	11
(Ribosomal_L14);(Ribosomal_L3)	1	95	167	102	175	10	411	54	7	93
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)	1	82	96	85	99	10	756	25	10	96
(Synaptobrevin);(Syntaxin)_(SNARE)	1	18	22	18	23	10	1392	100	68	100
(CBFD_NFYB_HMF);(MCM2_N)	1	5	6	5	6	83	1186	100	100	100
(Histone);(MCM2_N)	1	5	6	5	6	83	843	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_beta_N)_(MCR_beta)	1	9	13	9	13	10	1211	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_beta_N)_(MCR_beta)	2	9	13	9	13	47	2210	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_gamma)	1	9	13	9	13	47	595	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_gamma)	2	9	13	9	13	47	2482	100	100	100
(MCR_beta_N)_(MCR_beta);(MCR_gamma)	1	9	13	9	13	47	2699	100	100	100
(Med21);(Med7)	1	5	6	5	6	23	1731	100	50	100
(Med31);(Med7)	1	5	6	5	6	10	1045	100	50	100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)	1	13	68	13	71	10	4673	100	100	100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)	2	6	32	13	71	10	422	100	100	46
(Pico_P1A);(Rhv)	1	38	122	41	126	32	1016	100	42	93
(Pico_P1A);(Rhv)	2	30	114	41	126	10	814	100	38	73
(Pico_P1A);(Rhv)	3	29	100	41	126	36	533	100	37	71
(Phenol_Hydrox)_(YHS);(TmoB)	1	7	37	7	39	52	1321	100	100	100
(Calici_coat);(CRPV_capsid)	1	5	5	5	5	12	1073	100	20	100
(Calici_coat);(CRPV_capsid)	2	5	5	5	5	19	1392	100	20	100
(HAV_VP);(Rhv)	1	9	9	12	13	10	1432	100	22	75
(Antistasin);(Trypsin)	1	5	5	5	5	13	572	100	100	100
(eIF-6);(Ribosomal_L14)	1	6	6	6	6	60	877	100	50	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	1	51	65	79	93	10	774	14	2	65
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)	1	60	74	77	91	23	957	24	9	78
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)	2	15	15	77	91	10	989	0	0	19
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	48	62	63	77	10	482	16	10	76
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	2	13	13	63	77	10	237	23	8	21
(Ribosomal_L13);(Ribosomal_L18A)	1	53	67	75	89	35	682	13	1	71
(Ribosomal_L13);(Ribosomal_L18A)	2	22	22	75	89	15	668	36	23	29
(Ribosomal_L13);(Ribosomal_L35Ae)	1	46	48	65	79	10	239	17	2	71
(Ribosomal_L13);(Ribosomal_L35Ae)	2	19	19	65	79	37	243	32	21	29
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	22	54	22	54	80	1931	100	83	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	2	20	51	22	54	80	256	100	88	91
(Cytochrom_B_C);(Cytochrome_B)	1	5	13	5	13	11	3070	100	100	100
(Ribosomal_L14);(Ribosomal_L24e)	1	94	166	99	173	10	514	54	7	95
(Ribosomal_L14);(Ribosomal_L24e)	2	5	6	99	173	29	524	83	17	5
(Ribosomal_L15e);(Ribosomal_L29)	1	78	92	78	92	20	356	21	8	100
(Ribosomal_L15e);(Ribosomal_L7Ae)	1	90	162	90	163	10	908	54	5	100
(Ribosomal_L18);(Ribosomal_L27A)	1	80	94	83	97	10	894	23	7	96
(Ribosomal_L18A);(Ribosomal_L21e)	1	74	88	77	91	10	905	20	8	96
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)	1	73	87	76	90	10	302	18	8	96
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)	1	91	163	93	166	10	1209	55	5	98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)	1	68	82	76	90	10	297	23	9	89
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	79	93	85	99	10	850	22	8	93
(Me-amine-dh_H);(Me-amine-dh_L)	1	14	69	14	69	12	1511	99	94	100
(Me-amine-dh_H);(Me-amine-dh_L)	2	14	69	14	69	12	1142	94	96	100
(MCM_N)_(MCM_OB)_(MCM);(MCM2_N)_(MCM_N)_(MCM_OB)_(MCM)	1	10	10	10	10	18	2592	100	40	100
(Sld5);(Sld5)_(SLD5_C)	1	7	8	7	8	18	2007	100	62	100
(Sld5);(Sld5)_(SLD5_C)	2	7	8	7	8	16	1428	100	62	100
(Sld5);(Sld5)_(SLD5_C)	3	7	8	7	8	18	243	100	62	100
(Ribosomal_L24e);(Ribosomal_L3)	1	81	95	86	100	10	589	21	9	94
(Ribosomal_L29);(Ribosomal_L37e)	1	17	17	17	17	45	205	18	0	100
(Ribosomal_L34e);(Ribosomal_L7Ae)	1	76	90	82	96	10	263	20	8	93
(Ribosomal_L37ae);(Ribosomal_L7Ae)	1	8	8	10	10	18	247	12	0	80
(Ribosomal_L37e);(Ribosomal_L39)	1	66	80	69	83	39	230	20	9	96
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)	1	74	88	80	94	10	244	19	8	92
(Cyclin_N)_(Cyclin_C);(Pkinase)	1	23	102	24	139	10	1578	98	97	96
(ATP1G1_PLM_MAT8);(Na_K-ATPase)	1	6	30	7	32	20	397	100	100	86
(MRP-L47);(Ribosomal_L23)	1	5	5	8	8	16	1663	60	20	62
(PBP);(RF-1)	1	5	5	5	5	79	780	60	0	100
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	1	21	55	22	75	27	3609	98	98	95
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	2	6	16	22	75	47	856	81	94	27
(Fer4_7);(PsaA_PsaB)	1	8	14	8	14	78	405	100	50	100
(Fer4_7);(PsaA_PsaB)	2	8	14	8	14	10	854	100	50	100
(Fer4_7);(PsaD)	1	8	14	8	14	56	1450	100	50	100
(Fer4_7);(PSI_PsaE)	1	8	14	8	14	10	474	100	50	100
(PsaA_PsaB);(PsaD)	1	8	14	8	14	56	762	100	50	100
(PsaA_PsaB);(PsaD)	2	8	14	8	14	56	734	100	50	100
(PsaA_PsaB);(PsaL)	1	7	13	7	13	39	312	100	54	100
(PsaA_PsaB);(PsaL)	2	6	12	7	13	39	461	100	58	86
(PsaA_PsaB);(PSI_8)	1	6	12	7	13	41	580	100	58	86
(PsaA_PsaB);(PSI_PsaE)	1	8	14	8	14	43	374	100	50	100
(PsaA_PsaB);(PSI_PsaE)	2	6	9	8	14	43	285	100	44	75
(PsaA_PsaB);(PSI_PsaF)	1	7	13	7	13	42	865	100	54	100
(PsaA_PsaB);(PSI_PsaF)	2	7	13	7	13	42	813	100	54	100
(PsaA_PsaB);(PSI_PSAK)	1	5	8	8	14	23	396	100	12	62
(NusB);(Ribosomal_S10)	1	6	7	6	7	23	806	86	14	100
(PsaD);(PsaL)	1	7	13	7	13	39	478	100	54	100
(Bclx_interact);(BH4)_(Bcl-2)	1	11	13	11	13	10	996	100	100	100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	1	173	373	264	504	10	406	99	18	66
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	2	80	94	264	504	10	474	21	4	30
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	1	177	383	262	502	10	863	99	20	68
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	2	80	94	262	502	10	411	21	4	31
(Ribosom_S12_S23);(Ribosomal_S17)	1	151	334	166	390	10	220	99	25	91
(Ribosomal_S10);(Ribosomal_S14)	1	181	382	273	513	10	800	99	22	66
(Ribosomal_S10);(Ribosomal_S14)	2	89	103	273	513	10	756	22	5	33
(Ribosomal_S10);(Ribosomal_S9)	1	16	16	34	41	17	288	81	0	47
(Ribosomal_S11);(Ribosomal_S18)	1	82	255	108	312	41	313	100	9	76
(Ribosomal_S11);(Ribosomal_S7)	1	141	310	168	382	10	243	98	22	84
(Ribosomal_S13);(Ribosomal_S19)	1	258	477	270	510	10	433	84	11	96
(Ribosomal_S14);(Ribosomal_S19)	1	88	115	106	134	10	296	98	20	83
(PSI_PsaF);(PSI_PsaJ)	1	7	13	7	13	38	662	100	54	100
(OTU);(ubiquitin)	1	12	14	12	14	10	1021	100	93	100
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)	1	16	36	16	38	16	761	100	67	100
(PALP);(Trp_syntA)	1	6	67	6	67	24	1343	100	97	100
(Cytochrom_B559);(Photo_RC)	1	16	35	16	38	10	466	100	74	100
(Beta-lactamase2);(BLIP)	1	7	14	7	14	39	1214	93	100	100
(Cytochrom_B559);(PsbJ)	1	14	34	14	36	10	373	100	50	100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	1	15	34	16	38	31	1328	100	71	94
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	2	15	35	16	38	10	311	100	71	94
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)	1	14	34	14	36	10	390	100	50	100
(MSP);(Photo_RC)	1	15	34	15	37	31	680	100	53	100
(MSP);(Photo_RC)	2	14	33	15	37	10	709	100	48	93
(MSP);(PSII)	1	15	34	15	37	43	767	100	50	100
(MSP);(PSII)	2	15	33	15	37	43	1297	100	55	100
(MSP);(PSII)	3	13	26	15	37	10	393	65	8	87
(Photo_RC);(PsbH)	1	15	34	15	37	31	271	100	68	100
(Photo_RC);(PsbI)	1	15	35	15	37	10	863	100	49	100
(Photo_RC);(PsbL)	1	15	35	15	37	10	253	100	57	100
(Photo_RC);(PsbL)	2	13	26	15	37	10	396	100	50	87
(Photo_RC);(PsbT)	1	15	35	15	37	48	517	100	60	100
(Photo_RC);(PsbT)	2	11	23	15	37	48	208	100	52	73
(Photo_RC);(PsbX)	1	14	32	14	36	31	589	100	62	100
(Photo_RC);(PSII)	1	16	36	16	38	17	798	100	81	100
(Photo_RC);(PSII)	2	16	35	16	38	31	2744	100	77	100
(Photo_RC);(PSII)	3	15	33	16	38	79	3177	100	70	94
(PsbH);(PsbX)	1	14	32	14	36	31	296	100	53	100
(PsbH);(PSII)	1	15	35	15	37	61	1891	100	71	100
(PsbI);(PSII)	1	15	33	15	37	67	451	100	52	100
(PsbK);(PSII)	1	15	33	15	37	14	819	100	67	100
(PsbK);(Ycf9)	1	15	35	15	37	12	273	100	51	100
(PsbL);(PsbM)	1	14	34	14	36	10	804	100	74	100
(PsbL);(PsbT)	1	14	34	14	36	10	603	100	74	100
(PsbL);(PSII)	1	15	35	15	37	10	600	100	60	100
(PsbM);(PsbT)	1	9	18	12	34	44	217	100	28	75
(PSII);(Ycf9)	1	15	32	15	37	10	437	100	50	100
(Ribosomal_S18);(Ribosomal_S6)	1	180	378	191	417	10	933	99	13	94
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	13	13	20	474	57	0	54
(Ribosomal_S2);(Ribosomal_S8)	1	72	242	77	274	82	258	100	8	94
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	1	140	340	220	460	10	320	99	23	64
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	1	5	10	5	10	34	666	100	100	100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	2	5	10	5	10	34	420	100	100	100
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	2	47	61	220	460	10	370	18	5	21
(Ribosomal_S4)_(S4);(Ribosomal_S6)	2	8	26	54	123	10	257	0	0	15
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	1	168	368	275	515	10	569	95	20	61
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	2	70	84	275	515	10	543	26	7	25
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	3	20	20	275	515	10	542	95	0	7
(Ribosomal_S7);(Ribosomal_S9)	1	211	393	244	460	10	447	81	14	86
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	45	74	48	77	12	1564	100	92	94
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	7	35	7	35	65	1846	100	94	100
(Cohesin);(Dockerin_1)_(Dockerin_1)	1	6	6	10	10	10	916	100	100	60
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	1	7	12	7	12	43	364	92	8	100
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	2	7	12	7	12	43	460	92	8	100
(MHC_I)_(C1-set);(V-set)_(DUF1968)	1	13	42	16	55	22	593	88	38	81
(MHC_I)_(C1-set);(V-set)_(C1-set)	1	5	7	15	54	67	389	100	14	33
(MHC_I)_(C1-set);(V-set)_(C1-set)	2	5	6	15	54	40	446	83	33	33
(V-set)_(C1-set);(V-set)_(DUF1968)	1	157	261	163	279	10	2041	99	91	96
(V-set)_(C1-set);(V-set)_(DUF1968)	2	6	9	163	279	65	251	0	11	4
(V-set)_(C1-set);(V-set)_(DUF1968)	3	5	8	163	279	66	309	0	0	3
(V-set)_(C1-set);(V-set)_(DUF1968)	4	5	6	163	279	58	674	0	0	3
(Ras);(RhoGEF)_(PH)	1	13	15	14	16	10	1508	100	100	93
(CENP-S);(CENP-X)	1	7	13	7	13	10	2295	100	100	100
(C1-set);(MHC_I_3)_(C1-set)	1	15	62	15	67	28	1296	100	94	100
(MHC_I_3)_(C1-set);(V-set)_(C1-set)	1	5	33	7	37	67	306	100	79	71
(MHC_I_3)_(C1-set);(V-set)_(DUF1968)	1	5	33	7	37	67	449	100	79	71
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	1	13	52	13	52	20	1776	100	96	100
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	2	10	24	13	52	29	316	100	100	77
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)	1	17	127	18	146	60	2603	100	99	94
(CRPV_capsid);(Rhv)	1	7	9	8	10	10	894	67	33	88
(CRPV_capsid);(Rhv)	2	5	5	8	10	10	1082	40	20	62
(Rhv);(VP4_2)	1	8	18	10	22	23	587	94	17	80
(Rhv);(VP4_2)	2	6	14	10	22	47	231	100	14	60
(Cullin)_(Cullin_Nedd8);(zf-rbx1)	1	12	12	12	12	10	2009	100	100	100
(Cullin_binding);(Cullin_Nedd8)	1	5	5	5	5	24	554	80	0	100
(Cys_knot);(Hormone_6)	1	5	7	5	7	10	2132	100	100	100
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)	1	15	23	26	35	52	302	91	35	58
(CytoC_RC);(Photo_RC)	1	9	29	9	33	45	1707	100	97	100
(CytoC_RC);(Photo_RC)	2	8	27	9	33	45	2608	100	100	89
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)	1	28	32	31	41	20	354	97	25	90
(Ribosomal_L16);(Ribosomal_L21e)	1	34	47	39	53	10	214	13	11	87
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	42	56	63	77	50	257	12	7	67
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)	1	39	39	47	47	38	634	38	18	83
(Hemagglutinin);(V-set)_(C1-set)	1	5	7	53	62	15	507	100	29	9
(Photo_RC);(PRCH)_(PRC)	1	14	126	14	131	38	1616	100	97	100
(Photo_RC);(PRCH)_(PRC)	2	14	126	14	131	38	2676	100	98	100
(TBP)_(TBP);(TFIIB)_(TFIIB)	1	6	8	6	8	15	1190	100	88	100
(MMS1_N)_(CPSF_A);(WD40)_(WD40)_(WD40)_(WD40)	1	6	11	6	11	50	2103	100	100	100
(Hemagglutinin);(V-set)_(C1-set)	2	5	5	53	62	45	524	100	60	9
(Cupin_1);(Cupin_2)	1	5	6	5	6	89	1148	100	100	100
(Cupin_1);(Cupin_2)	2	5	6	5	6	15	1967	100	100	100
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_17)	1	7	51	7	51	10	2566	100	100	100
(Fer2_3)_(Fer4_17);(Sdh_cyt)	1	5	22	7	51	19	1518	100	100	71
(Cytochrom_C550);(Photo_RC)	1	15	35	15	37	54	564	100	80	100
(Cytochrom_C550);(Photo_RC)	2	8	15	15	37	54	204	100	87	53
(Cytochrom_C550);(PsbU)	1	14	34	14	36	35	635	100	62	100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)_(C1-set)	1	7	9	12	14	22	689	100	44	58
(Cystatin);(Peptidase_C1)	1	6	7	6	7	21	894	100	100	100
(Cytochrom_C550);(PSII)	1	16	34	16	38	54	903	100	76	100
(MSP);(PsbU)	1	14	33	14	36	35	518	100	52	100
(PsbK);(PSII_Ycf12)	1	12	30	12	34	10	485	100	57	100
(PsbU);(PSII)	1	14	34	14	36	35	447	100	62	100
(PsbU);(PSII)	2	14	32	14	36	35	437	100	56	100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	1	107	138	110	145	10	2639	100	97	97
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	2	19	21	110	145	21	380	14	14	17
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	3	10	11	110	145	23	325	0	0	9
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	4	6	6	110	145	53	291	17	17	5
(PSII_Ycf12);(Ycf9)	1	12	30	12	34	10	395	100	53	100
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)	1	23	31	31	41	10	343	94	26	74
(MHC_II_beta)_(C1-set);(MHC2-interact)	1	5	5	10	11	55	683	100	100	50
(ubiquitin);(Viral_protease)	1	6	8	7	9	29	958	100	100	86
(UQ_con);(zf-RING_2)	1	8	8	8	8	27	608	100	38	100
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)	1	60	154	67	188	10	1137	100	12	90
(Ribosomal_L31);(Ribosomal_S13)	1	42	119	73	172	40	429	100	12	58
(Ribosomal_L31);(Ribosomal_S13)	2	14	14	73	172	16	330	100	57	19
(Ribosomal_L31);(Ribosomal_S19)	1	45	103	73	161	10	449	100	22	62
(C1-set);(MHC_I)_(C2-set_2)	1	16	22	16	22	39	1301	100	100	100
(CRPV_capsid);(Waikav_capsid_1)	1	8	10	8	10	16	1353	20	10	100
(CRPV_capsid);(Waikav_capsid_1)	2	8	10	8	10	16	1324	20	10	100
(DUF331);(PCRF)_(RF-1)	1	6	6	6	6	43	1009	100	33	100
(DUF331);(Ribosom_S12_S23)	1	7	7	9	9	10	403	100	29	78
(CX9C)_(CHCH);(MWFE)	1	5	5	5	5	64	726	80	80	100
(CX9C)_(CHCH);(NADHdh_A3)	1	5	5	5	5	64	844	80	80	100
(DCP1);(DCP2)_(NUDIX)	1	7	8	7	8	19	1047	100	75	100
(CX9C)_(CHCH);(Ndufs5)	1	5	5	5	5	64	366	80	80	100
(DCP1);(PNRC)	1	5	6	6	7	31	785	100	100	83
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Gar1)	1	5	5	5	5	24	855	100	100	100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Nop10p)	1	10	10	10	10	27	1331	100	100	100
(Tfb2);(Tfb5)	1	5	5	5	5	10	982	100	0	100
(NADHdh);(Oxidored_q6)	1	6	6	8	8	25	1249	83	83	75
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	5	5	5	5	47	1718	100	80	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	2	8	8	25	25	10	444	0	0	32
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	3	6	6	25	25	10	472	33	0	24
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)	1	78	92	80	94	10	665	21	8	98
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	1	77	91	79	93	10	512	20	8	97
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	2	70	84	79	93	10	282	20	8	89
(Ribosomal_L15e);(Ribosomal_L36e)	1	77	91	77	91	10	528	21	8	100
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)	1	63	77	75	89	10	261	21	9	84
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)	1	67	81	78	92	10	462	23	9	86
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	63	77	76	90	34	591	23	9	83
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)	1	68	82	73	87	10	224	23	10	93
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)	1	71	85	71	85	10	373	20	7	100
(Ribosomal_L27A);(Ribosomal_L36e)	1	62	76	65	79	10	230	18	8	95
(Ribosomal_L36e);(Ribosomal_L7Ae)	1	67	81	75	89	10	307	23	9	89
(Ribosomal_L36e);(Ribosomal_L7Ae)	2	8	8	75	89	10	349	0	0	11
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)	1	13	13	20	20	70	222	15	15	65
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)	1	41	55	41	55	38	493	18	11	100
(Ribosomal_L13e);(Ribosomal_L15e)	1	76	90	76	90	10	515	21	8	100
(Ribosomal_L13e);(Ribosomal_L18)	1	61	75	65	79	10	235	19	9	94
(Ribosomal_L13e);(Ribosomal_L27A)	1	79	93	79	93	10	1478	24	8	100
(Ribosomal_L13e);(Ribosomal_L29)	1	78	92	78	92	10	910	24	8	100
(Ribosomal_L13e);(Ribosomal_L36e)	1	75	89	75	89	10	649	20	8	100
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	38	38	43	43	10	221	18	5	88
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	74	88	76	90	10	269	22	8	97
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	77	91	79	93	10	1116	22	8	97
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	37	51	41	55	46	235	22	14	90
(Ribosomal_L22)_(Ribosomal_L22);(Ribosomal_L6e)	1	5	5	6	6	82	278	0	0	83
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)	1	19	19	23	23	47	226	16	5	83
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)	1	63	77	74	88	10	1069	22	9	85
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)	2	11	11	74	88	52	891	9	0	15
(Ribosomal_L32e);(Ribosomal_L6e)	1	38	52	38	52	78	527	17	12	100
(Ribosomal_L35Ae);(Ribosomal_L6e)	1	41	55	41	55	40	868	18	11	100
(E3_binding);(Pyr_redox_2)_(Pyr_redox_dim)	1	6	6	6	6	22	478	100	17	100
(E3_binding);(Pyr_redox_2)_(Pyr_redox_dim)	2	6	6	6	6	22	409	100	17	100
(ECR1_N)_(EXOSC1);(RNase_PH)_(RNase_PH_C)	1	8	10	9	11	15	789	100	90	89
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	8	8	8	8	33	1195	100	88	100
(Ecotin);(Trypsin)	1	12	17	12	17	27	952	100	100	100
(Ecotin);(Trypsin)	2	10	15	12	17	27	512	93	100	83
(RNA_pol_I_A49);(RNA_polI_A34)	1	15	19	15	19	38	2125	100	95	100
(Ribosomal_L18);(Ribosomal_L28e)	1	36	36	36	36	10	232	22	3	100
(RNA_polI_A14);(SHS2_Rpb7-N)	1	14	18	14	18	84	1620	100	67	100
(EF-hand_7);(Lectin_leg-like)	1	6	9	6	9	88	763	100	100	100
(EGF);(Recep_L_domain)_(Furin-like)_(Recep_L_domain)_(GF_rec ep_IV)	1	6	7	6	7	33	1554	100	100	100
(DUF5089);(Synaptobrevin)	1	8	13	12	17	10	1108	100	77	67
(DUF5089);(Synaptobrevin)	2	7	8	12	17	10	311	100	100	58
(Ribosomal_S2);(Ribosomal_S21e)	1	8	8	8	8	32	1464	25	12	100
(DUF5089);(Syntaxin)_(SNARE)	1	11	12	11	12	10	1466	100	100	100
(C1-set);(MHC_I)_(Ig_3)	1	256	503	257	507	22	1283	99	94	100
(C1-set);(MHC_I)_(Ig_3)	2	30	81	257	507	83	258	0	0	12
(C1-set);(MHC_I)_(Ig_3)	3	20	62	257	507	19	261	0	2	8
(C1-set);(MHC_I)_(Ig_3)	4	20	36	257	507	74	333	3	0	8
(C1-set);(MHC_I)_(Ig_3)	5	20	36	257	507	74	344	3	11	8
(C1-set);(MHC_I)_(Ig_3)	6	20	28	257	507	41	267	0	11	8
(C1-set);(MHC_I)_(Ig_3)	7	16	65	257	507	84	214	2	0	6
(C1-set);(MHC_I)_(Ig_3)	9	11	36	257	507	84	510	0	6	4
(C1-set);(MHC_I)_(Ig_3)	10	11	37	257	507	69	224	0	0	4
(C1-set);(MHC_I)_(Ig_3)	11	10	15	257	507	86	335	0	0	4
(C1-set);(MHC_I)_(Ig_3)	12	8	13	257	507	12	238	0	0	3
(C1-set);(MHC_I)_(Ig_3)	13	7	10	257	507	82	436	0	0	3
(C1-set);(MHC_I)_(Ig_3)	14	6	8	257	507	28	309	38	50	2
(C1-set);(MHC_I)_(Ig_3)	16	5	9	257	507	11	401	0	0	2
(Enterotoxin_a);(Enterotoxin_b)	1	6	15	6	15	61	310	100	67	100
(Enterotoxin_a);(Enterotoxin_b)	2	6	15	6	15	61	529	100	67	100
(Ephrin);(Ephrin_lbd)	1	7	7	10	10	29	1124	100	100	70
(C1-set);(MHC_I)_(Ig_3)	18	5	6	257	507	23	238	0	17	2
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	1	14	32	14	32	31	1737	100	88	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	2	12	27	14	32	31	853	100	96	86
(EF-hand_1)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(IQ)_(IQ)	1	5	7	5	7	32	1636	86	57	100
(EF-hand_7)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(IQ)	1	5	6	7	8	10	1573	100	83	71
(MHC_I)_(Ig_3);(V-set)_(DUF1968)	1	24	48	49	82	37	410	100	69	49
(MHC_I)_(Ig_3);(V-set)_(DUF1968)	2	7	11	49	82	40	464	100	45	14
(MHC_I)_(Ig_3);(V-set)_(DUF1968)	3	6	8	49	82	11	335	88	0	12
(EF-hand_7)_(EF-hand_7);(PPP5)_(Metallophos)	1	9	13	9	13	59	2168	100	100	100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)	1	76	90	76	90	10	493	20	4	100
(Ribosomal_L28e);(Ribosomal_L32e)	1	34	34	39	39	10	755	24	0	87
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	15	15	24	24	83	518	20	0	62
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	2	8	8	24	24	10	512	0	0	33
(Ribosomal_L32e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	15	15	24	24	83	232	20	0	62
(KH_2)_(Ribosomal_S3_C);(S10_plectin)	1	75	89	75	89	10	890	20	4	100
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)	2	8	8	26	26	10	881	0	0	31
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)	1	30	44	30	44	10	480	5	2	100
(CSN8_PSD8_EIF3K);(TPR_19)_(PCI)	1	9	9	11	11	86	305	100	89	82
(JAB);(PPR)_(DUF410)_(PCI)	1	6	6	11	11	84	479	100	67	55
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)	1	85	99	85	99	10	464	21	7	100
(JAB);(Prot_ATP_ID_OB)_(AAA)	2	5	5	12	12	60	542	100	20	42
(JAB)_(MitMem_reg);(PPR)_(DUF410)_(PCI)	1	8	8	11	11	77	430	100	50	73
(JAB)_(MitMem_reg);(TPR_19)_(PCI)	1	11	11	11	11	77	1471	100	73	100
(Ig_3)_(C1-set);(V-set)_(DUF1968)	1	7	19	7	19	15	2039	100	79	100
(Ribosomal_L21e);(Ribosomal_L29e)	1	77	91	77	91	10	472	20	8	100
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	8	8	8	8	10	480	0	0	100
(MHC_II_alpha)_(C1-set);(Stap_Strp_toxin)_(Stap_Strp_tox_C)	1	8	17	11	20	29	683	100	0	73
(MHC_II_alpha)_(C1-set);(MHC2-interact)	1	5	5	10	11	55	673	100	100	50
(PPR)_(DUF410)_(PCI);(RPN7)_(PCI)	1	11	11	11	11	84	1376	100	64	100
(CSN8_PSD8_EIF3K);(TPR_2)_(PCI)_(Rpn3_C)	1	8	8	8	8	72	1899	100	38	100
(DSS1_SEM1);(TPR_2)_(PCI)_(Rpn3_C)	1	5	5	5	5	89	975	100	0	100
(DUF410)_(PCI);(JAB)_(MitMem_reg)	1	5	5	7	7	43	560	100	40	71
(RPN7)_(PCI);(TPR_2)_(PCI)_(Rpn3_C)	1	8	8	8	8	72	1212	100	38	100
(Ribosom_S12_S23);(Ribosomal_S30)	1	67	81	68	82	10	474	23	6	99
(CSN8_PSD8_EIF3K);(TPR_19)_(PCI)_(Rpn3_C)	1	10	10	10	10	86	2061	100	80	100
(PPTA)_(PPTA)_(PPTA)_(PPTA)_(PPTA);(Prenyltrans)_(Prenyltran s)_(Prenyltrans)_(Prenyltrans)_(Prenyltrans)	1	6	79	6	79	19	3063	94	100	100
(JAB)_(MitMem_reg);(TPR_19)_(PCI)_(Rpn3_C)	1	6	6	10	10	77	697	100	67	60
(Prot_ATP_ID_OB)_(AAA);(TarH)_(Prot_ATP_ID_OB)_(AAA)	1	5	5	5	5	38	3189	100	80	100
(Ribosomal_L24e);(Ribosomal_S6e)	1	32	46	35	49	10	814	0	0	91
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)	1	30	44	30	44	46	659	7	7	100
(Ribosomal_L7Ae);(Ribosomal_S27)	1	27	41	31	45	10	508	12	7	87
(Nop);(Ribosomal_L7Ae)	1	6	7	6	7	26	543	100	86	100
(Ribosomal_L7Ae);(S10_plectin)	1	16	16	20	20	31	288	19	0	80
(Ribosomal_S11);(Ribosomal_S26e)	1	71	85	79	93	10	1097	22	6	90
(Ribosomal_S13);(Ribosomal_S19e)	1	79	93	82	96	10	444	22	6	96
(Ribosomal_S13);(Ribosomal_S25)	1	70	84	75	89	10	470	20	5	93
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)	1	84	98	86	100	10	716	23	5	98
(Ribosomal_S14);(S10_plectin)	1	74	88	76	90	10	289	20	5	97
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	1	67	81	74	88	10	997	16	5	91
(Fimbrial);(PapD_N)_(PapD_C)	1	12	14	12	14	10	1663	100	100	100
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	32	46	32	46	10	541	4	2	100
(Ribosomal_S19e);(Ribosomal_S9)	1	45	45	51	51	10	291	22	11	88
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)	1	74	88	74	88	10	1522	19	6	100
(IL23);(Izumo-Ig)_(IL12p40_C)_(fn3)	1	5	5	5	5	88	1010	100	100	100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	9	9	9	9	26	1487	89	0	100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	75	89	75	89	10	543	19	6	100
(Ribosomal_S21e);(Ribosomal_S27e)	1	39	53	39	53	55	438	17	4	100
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)	1	78	92	78	92	10	1322	21	5	100
(Ribosomal_S21e);(Ribosomal_S8)	1	67	81	68	82	10	282	20	5	99
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	1	76	90	83	97	10	540	22	6	92
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	2	7	7	83	97	29	525	29	0	8
(fn3);(HH_signal)_(Hint)	1	5	6	5	6	78	667	100	17	100
(Ribosomal_S25);(Ribosomal_S7)	1	73	87	77	91	10	611	21	5	95
(Ribosomal_S26e);(Ribosomal_S28e)	1	7	7	12	12	64	233	29	0	58
(MHC_I)_(Ig_3);(V-set)_(C1-set)	1	38	62	47	73	10	406	98	48	81
(MHC_I)_(Ig_3);(V-set)_(C1-set)	2	7	16	47	73	10	268	0	0	15
(Serpin);(Trypsin)	1	10	10	14	14	24	1122	100	100	71
(Ribosomal_S26e);(Ribosomal_S3Ae)	1	63	77	69	83	10	271	22	4	91
(Ribosomal_S27e);(Ribosomal_S7e)	1	31	31	33	33	31	350	26	6	94
(Ribosomal_S27e);(Ribosomal_S8)	1	82	96	82	96	10	487	23	5	100
(Ribosomal_S30);(Ribosomal_S4)_(S4)	1	44	58	44	58	10	503	14	3	100
(Ribosomal_S4)_(S4);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_ S4_C)	1	39	53	39	53	10	385	9	4	100
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )	1	75	89	75	89	10	313	20	6	100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)	1	33	47	37	51	44	311	6	2	89
(eIF-5_eIF-2B);(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C)	1	8	9	8	9	31	1041	100	56	100
(eIF_4EBP);(IF4E)	1	7	10	11	19	33	840	100	100	64
(eIF-1a);(Ribosom_S12_S23)	1	13	13	22	22	20	462	100	23	59
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	33	33	37	37	10	486	36	9	89
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)	1	39	39	41	41	10	579	33	3	95
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	40	40	40	40	10	554	38	8	100
(Ribosomal_S24e);(S4)	1	10	10	11	11	10	224	70	20	91
(Ribosomal_S30);(S4)	1	22	22	22	22	10	485	45	14	100
(Ribosomal_S5)_(Ribosomal_S5_C);(S4)	1	35	35	40	40	10	372	23	9	88
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	36	36	36	36	10	284	42	8	100
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)	1	37	37	37	37	10	345	35	8	100
(Ribosom_S12_S23);(ubiquitin)_(Ribosomal_S30)	1	15	15	15	15	55	399	20	0	100
(S4);(ubiquitin)_(Ribosomal_S30)	1	15	15	15	15	55	524	20	0	100
(C1-set);(MHC_I_3)_(Ig_3)	1	22	32	22	32	23	1243	100	94	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(zf- RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(R NA_pol_Rpb1_5)	1	11	24	14	43	74	1162	100	75	79
(Ribosomal_L23);(Ribosomal_L39)	1	8	66	8	67	49	275	98	2	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (zf-RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4 )_(RNA_pol_Rpb1_5)	1	11	24	14	43	74	8592	100	88	79
(RNA_pol_Rpb6);(zf-RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_ (RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	12	25	14	43	74	2315	100	88	86
(G-alpha);(RGS)	1	10	10	10	10	37	875	100	10	100
(GDI);(Ras)	1	5	6	5	6	20	1161	100	83	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(Sig ma70_r1_1)_(Sigma70_r1_2)_(Sigma70_ner)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)	1	5	12	6	18	10	340	100	100	83
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	13	25	13	26	78	2778	100	84	100
(Colicin_Pyocin);(HNH)	1	6	20	6	20	58	762	95	60	100
(CPSase_sm_chain);(Furin-like_2)	1	6	7	6	7	36	1002	100	100	100
(ECR1_N)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	7	7	7	7	84	905	100	86	100
(DUF5323);(Ribosomal_L20)	1	6	6	6	6	10	223	100	50	100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	14	28	17	31	77	771	0	0	82
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	14	28	17	31	77	566	0	0	82
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	1	8	21	17	31	86	262	0	0	47
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	2	5	5	17	31	77	262	0	0	29
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)	1	14	28	17	31	77	527	0	0	82
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)	1	14	28	17	31	77	419	0	0	82
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	14	27	17	31	77	256	0	0	82
(Ribosomal_L28e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	32	32	37	37	10	934	22	0	86
(Ribosomal_L4)_(Ribos_L4_asso_C);(Ribosomal_L6e_N)_(Ribosoma l_L6e)	1	21	21	22	22	10	351	14	0	95
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosoma l_L10)_(Ribosomal_60s)	1	6	6	6	6	54	582	0	0	100
(KOW)_(Ribosomal_L6e);(Ribosomal_L35Ae)	1	7	7	9	9	33	866	29	0	78
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)	1	11	17	11	17	84	897	100	100	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_ Rpb2_7)	1	6	13	6	13	90	8165	100	100	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)	1	7	16	7	16	36	2607	100	100	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_ Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	6	13	6	13	86	268	100	100	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7)	1	11	29	11	29	78	7766	100	90	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_( RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(Sigma70_ r1_1)_(Sigma70_r1_2)_(Sigma70_ner)_(Sigma70_r2)_(Sigma70_r3) _(Sigma70_r4)	1	5	16	6	19	89	1916	100	100	83
(HECT);(ubiquitin)	1	6	6	7	8	51	834	83	83	86
(IGFBP);(Insulin)	1	5	5	5	5	58	820	100	100	100
(IL4Ra_N)_(fn3);(IL6Ra-bind)_(fn3)	1	5	5	5	5	18	882	100	40	100
(Inhibitor_I42);(Peptidase_C1)	1	5	5	6	6	36	1074	100	100	83
(RanGAP1_C);(UQ_con)	1	6	11	6	11	81	569	100	9	100
(Kazal_1);(Trypsin)	1	10	35	10	35	10	639	100	97	100
(Kunitz_legume);(Trypsin)	1	6	7	7	8	32	986	100	100	86
(Ribosomal_L13);(Ribosomal_L20)	1	172	299	186	334	10	520	99	18	92
(Ribosomal_L13);(Ribosomal_L20)	2	10	10	186	334	29	459	80	20	5
(Ribosomal_L14);(Ribosomal_L19)	1	179	307	194	342	10	801	99	16	92
(Ribosomal_L14);(Ribosomal_L19)	2	6	8	194	342	54	745	100	25	3
(Ribosomal_L16);(Ribosomal_L27)	1	36	82	45	115	22	263	100	4	80
(Ribosomal_L17);(Ribosomal_L32p)	1	173	300	185	330	10	353	99	15	94
(Ribosomal_L18p);(Ribosomal_L27)	1	7	8	13	14	43	242	100	12	54
(Ribosomal_L19);(Ribosomal_L3)	1	175	302	193	341	10	716	98	17	91
(Ribosomal_L19);(Ribosomal_L3)	3	6	8	193	341	54	727	100	25	3
(Ribosomal_L20);(Ribosomal_L21p)	1	186	317	191	340	10	967	99	15	97
(Ribosomal_L22);(Ribosomal_L32p)	1	183	314	189	338	10	464	98	17	97
(Ribosomal_L23);(Ribosomal_L29)	1	184	369	196	404	10	479	99	13	94
(Ribosomal_L23);(Ribosomal_L29)	2	9	10	196	404	10	503	100	10	5
(Ribosomal_L27A);(Ribosomal_L35p)	1	170	292	189	337	10	780	98	15	90
(Ribosomal_L27A);(Ribosomal_L35p)	2	9	14	189	337	46	509	100	64	5
(Ribosomal_L27A);(Ribosomal_L4)	1	145	246	187	334	10	455	97	18	78
(Ribosomal_L27A);(Ribosomal_L4)	2	22	29	187	334	10	430	100	0	12
(Ribosomal_L27A);(Ribosomal_L4)	3	12	22	187	334	10	355	100	41	6
(Ribosomal_L27A);(Ribosomal_L4)	4	6	6	187	334	10	498	100	50	3
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	1	72	153	101	205	10	962	100	15	71
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	2	10	11	101	205	10	659	100	18	10
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	4	5	5	101	205	27	603	100	20	5
(Lys);(V-set)	1	5	23	23	54	79	526	91	22	22
(Lys);(V-set)	2	5	23	23	54	79	382	91	22	22
(AAA);(Proteasome_A_N)_(Proteasome)	1	11	11	16	16	61	398	100	82	69
(AAA);(Proteasome_A_N)_(Proteasome)	2	9	9	16	16	35	307	100	44	56
(CSN8_PSD8_EIF3K);(JAB)	1	9	9	15	15	32	288	100	67	60
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)	1	6	6	13	13	32	315	100	67	46
(CSN8_PSD8_EIF3K);(RPN7)_(PCI)	1	8	8	8	8	73	321	100	25	100
(DSS1_SEM1);(RPN7)_(PCI)	1	16	16	21	21	10	684	100	56	76
(DSS1_SEM1);(RPN7)_(PCI)	2	5	5	21	21	89	917	100	0	24
(JAB);(JAB)_(MitMem_reg)	1	21	23	27	30	19	2958	100	70	78
(JAB)_(MitMem_reg);(RPN7)_(PCI)	1	17	18	24	25	10	489	100	50	71
(Proteasome);(Proteasome)_(Pr_beta_C)	1	34	278	34	334	15	1109	100	82	100
(Proteasome);(Proteasome)_(Pr_beta_C)	2	23	227	34	334	17	891	100	77	68
(Proteasome);(Proteasome)_(Pr_beta_C)	3	23	265	34	334	17	1406	100	82	68
(Proteasome);(Proteasome_A_N)_(Proteasome)	1	44	295	44	349	10	424	100	76	100
(Proteasome);(Proteasome_A_N)_(Proteasome)	2	44	295	44	349	10	493	100	77	100
(Proteasome);(Proteasome_A_N)_(Proteasome)	3	9	9	44	349	18	590	100	22	20
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	1	34	235	34	334	10	634	100	72	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	2	34	274	34	334	15	637	100	76	100
(NHase_alpha);(NHase_beta)	1	8	46	9	56	16	3087	100	100	89
(NHase_alpha);(NHase_beta)	2	5	31	9	56	37	296	16	58	56
(AAA);(Prot_ATP_ID_OB)_(AAA)	1	12	12	12	12	34	3014	100	33	100
(DSS1_SEM1);(PCI)	1	6	6	6	6	21	2173	100	100	100
(JAB)_(MitMem_reg);(VWA_2)	1	14	14	14	14	48	628	100	57	100
(Prot_ATP_ID_OB)_(AAA);(Proteasome_A_N)_(Proteasome)	1	12	12	15	15	36	417	100	58	80
(Prot_ATP_ID_OB)_(AAA);(Proteasome_A_N)_(Proteasome)	2	7	7	15	15	54	391	100	43	47
(Prot_ATP_ID_OB)_(AAA);(Proteasome_A_N)_(Proteasome)	3	5	5	15	15	16	350	100	40	33
(ubiquitin);(UCH)	1	10	16	10	16	10	1810	100	88	100
(AAA_16)_(ORC4_C);(AAA_16)_(ORC5_C)	1	5	5	5	5	16	2675	100	80	100
(ORC2);(ORC3_N)	1	5	5	5	5	12	1929	100	80	100
(AAA_21);(AAA_23)	1	7	9	7	9	16	2862	100	100	100
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	1	13	13	30	30	10	251	100	38	43
(OTCace_N)_(OTCace);(PyrI)_(PyrI_C)	1	7	62	7	63	32	677	100	98	100
(Pacifastin_I);(Trypsin)	1	7	7	7	7	10	903	100	100	100
(PBD);(Ras)	1	5	6	5	7	16	1121	100	67	100
(Peptidase_C48);(Rad60-SLD)	1	10	14	10	14	15	1026	100	86	100
(Peptidase_M10);(TIMP)	1	8	9	8	9	42	1075	100	89	100
(Peptidase_S8);(potato_inhibit)	1	11	29	11	29	32	835	100	100	100
(Ras);(RBD-FIP)	1	5	6	7	9	35	668	100	83	71
(DNA_RNApol_7kD);(RNA_pol_A_bac)	1	50	149	50	150	20	572	100	60	100
(DNA_RNApol_7kD);(RNA_pol_N)	1	9	13	27	75	40	187	100	69	33
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	40	141	40	141	16	1004	100	57	100
(RNA_pol_A_bac);(RNA_pol_L_2)	1	50	150	50	150	10	2027	100	70	100
(RNA_pol_A_bac);(RNA_pol_N)	1	50	150	50	150	20	1104	100	81	100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	22	100	25	121	51	360	100	70	88
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	37	133	37	133	22	1697	100	80	100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	34	130	34	130	37	958	100	54	100
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	38	136	40	141	23	443	100	70	95
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	35	131	35	131	44	1539	100	77	100
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	34	130	37	133	44	1370	100	65	92
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	40	141	40	141	37	1528	100	80	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	32	128	34	130	53	9073	100	68	94
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)	1	35	131	35	131	43	2106	100	76	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	34	128	35	131	53	1893	100	75	97
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	34	130	35	131	29	1465	100	75	97
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	27	76	28	77	10	591	100	57	96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)	1	16	17	16	17	33	2020	100	18	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(SHS2_Rpb7-N)_(S1)	1	9	14	19	68	17	261	100	50	47
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	16	17	16	17	33	1742	100	12	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_beta)	1	12	12	12	12	33	1378	100	8	100
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)	1	33	86	35	89	10	2042	100	58	94
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)	1	29	68	31	85	17	443	99	49	94
(TBP)_(TBP);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	13	13	13	13	33	516	100	8	100
(TBP)_(TBP);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	16	17	16	17	40	454	100	29	100
(TFIIF_alpha);(TFIIF_beta)	1	11	11	15	15	16	2113	100	9	73
(ACR_tran);(AcrZ)	1	5	5	5	5	10	1230	80	80	100
(Plexin_cytopl);(Ras)	1	5	5	6	6	49	676	100	100	83
(Actin);(P21-Arc)	1	7	18	7	18	32	854	100	89	100
(Actin);(P34-Arc)	1	7	18	7	18	45	1648	100	100	100
(ARPC4);(P16-Arc)	1	7	18	7	18	29	911	100	100	100
(ARPC4);(P34-Arc)	1	7	18	7	18	11	2111	100	94	100
(EF-hand_6)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(IQ)_(IQ)	1	12	12	14	15	40	1540	100	8	86
(ecTbetaR2);(TGF_beta)	1	5	5	6	6	59	486	80	60	83
(Ras);(RasGEF_N)_(RasGEF)	1	5	20	5	20	16	1622	100	100	100
(Ras);(Rho_GDI)	1	7	7	7	7	53	1312	100	100	100
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_Penton_B)	1	5	5	5	5	10	1059	100	0	100
(AMPK1_CBM)_(AMPKBI);(CBS)_(CBS)_(CBS)_(CBS)	1	6	13	6	13	30	1148	92	92	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	1	11	44	11	44	31	890	98	91	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	2	11	44	11	44	31	1789	100	95	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	3	11	44	11	44	31	453	98	89	100
(Sec1);(Vps16_C)	1	5	5	5	5	28	2079	100	80	100
(Squash);(Trypsin)	1	7	10	7	10	40	812	100	100	100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)	1	5	9	5	9	43	626	100	44	100
(Cyclin_N)_(Cyclin_N);(Pkinase)	1	8	43	8	44	11	1308	100	98	100
(ubiquitin);(zf-A20)	1	5	7	7	10	30	385	57	0	71
(A2M_N)_(A2M_N_2);(A2M_recep)_(NTR)	1	6	9	6	9	20	716	100	100	100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(FAD_binding_5)_(CO_deh_flav_ C)	1	7	23	7	23	13	1174	100	100	100
(Kinesin);(Tubulin)_(Tubulin_C)	1	16	16	31	31	28	549	94	12	52
(Kinesin);(Tubulin)_(Tubulin_C)	2	16	16	31	31	28	616	94	12	52
(ATP-synt);(ATP-synt_DE_N)	1	5	5	5	5	54	509	100	40	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	1	7	8	7	8	52	1542	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	2	7	8	7	8	52	1070	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	1	7	14	7	14	45	2288	100	79	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	2	7	14	7	14	45	1500	100	79	100
(Aurora-A_bind);(Pkinase)	1	5	5	5	5	12	1213	100	100	100
(Bcl-2);(BID)	1	6	9	6	9	10	910	100	78	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	1	7	40	7	42	26	1736	100	100	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	2	7	40	7	42	26	1582	100	100	100
(Inhibitor_I9);(Peptidase_S8)	1	16	25	16	25	10	1266	96	100	100
(EGF)_(FXa_inhibition);(Trypsin)	1	8	14	8	14	38	888	100	100	100
(Ribosomal_S17e);(Ribosomal_S2)	1	8	8	8	8	47	1274	25	12	100
(RGM_N);(TGF_beta)	1	5	5	5	5	44	512	80	80	100
(RGM_N);(TGF_beta)	2	5	5	5	5	44	421	80	80	100
(Kunitz_BPTI);(Trypsin)	1	36	90	37	91	16	677	100	99	97
(Kunitz_BPTI);(Trypsin)	2	5	13	37	91	40	312	0	8	14
(Spc24);(Spindle_Spc25)	1	8	8	8	8	10	1310	100	88	100
(Rad60-SLD);(UQ_con)	1	7	7	12	13	18	568	71	14	58
(Rad60-SLD);(UQ_con)	2	5	6	12	13	47	586	100	83	42
(MazE_antitoxin);(PIN)	1	5	5	5	5	18	1289	100	100	100
(Cytochrom_C);(peroxidase)	1	7	19	8	21	37	562	100	32	88
(Med26)_(TFIIS_M)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2 )_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_po l_Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	7	7	7	7	31	2368	100	0	100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	1	6	31	6	32	42	1426	100	68	100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	2	6	31	6	32	42	641	100	68	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	1	10	29	10	31	12	4534	100	97	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	2	10	29	10	31	53	1302	100	97	100
(PKI);(Pkinase)	1	14	109	15	163	85	986	94	96	93
(PKI);(Pkinase)	2	11	132	15	163	79	400	2	2	73
(Polyketide_cyc2);(PP2C)	1	11	17	12	20	39	874	100	100	92
(Gla)_(EGF)_(FXa_inhibition);(Trypsin)	1	12	91	12	93	37	896	96	98	100
(Ras);(RhoGAP)	1	7	7	7	7	53	1099	100	100	100
(Ricin_B_lectin)_(Ricin_B_lectin);(RIP)	1	11	39	11	39	29	1551	100	97	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	1	10	15	10	17	10	504	100	80	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	2	10	15	10	17	10	654	100	80	100
(Mis12);(Nnf1)	1	5	5	5	5	12	3366	100	100	100
(DUF3585);(Ras)	1	5	5	5	5	42	913	100	80	100
(CBS)_(CBS)_(CBS)_(CBS);(Pkinase)_(UBA_2)_(AdenylateSensor)	1	5	12	5	12	79	975	92	92	100
(CBS)_(CBS)_(CBS)_(CBS);(Pkinase)_(UBA_2)_(AdenylateSensor)	2	5	12	5	12	10	449	0	0	100
(Skp1_POZ);(ubiquitin)	1	16	38	16	39	10	1060	100	92	100
(Stathmin);(Tubulin)_(Tubulin_C)	1	5	66	5	70	56	647	97	83	100
(Stathmin);(Tubulin)_(Tubulin_C)	2	5	66	5	70	56	1545	97	82	100
(CBFD_NFYB_HMF);(Histone)	1	45	164	45	177	14	2446	100	97	100
(CBFD_NFYB_HMF);(Histone)	2	19	90	45	177	10	496	98	96	42
(CBFD_NFYB_HMF);(Histone)	3	19	94	45	177	76	270	98	94	42
(CBFD_NFYB_HMF);(Histone)	4	7	63	45	177	15	252	0	3	16
(Thrombin_light);(Trypsin)	1	99	292	102	492	10	1183	100	99	97
(Thrombin_light);(Trypsin)	2	20	33	102	492	74	265	3	15	20
(Thrombin_light);(Trypsin)	5	6	15	102	492	76	327	0	0	6
(Thrombin_light);(Trypsin)	6	5	5	102	492	74	641	0	20	5
(Med11);(Med17)	1	9	9	11	11	10	1186	100	33	82
(Med11);(Med18)	1	6	6	6	6	11	369	100	33	100
(Med11);(Med22)	1	8	8	8	8	10	1620	100	38	100
(Med17);(Med22)	1	6	6	11	11	10	693	100	17	55
(Med17);(Med6)	1	10	10	10	10	10	740	100	20	100
(ubiquitin);(UQ_con)	1	14	14	32	39	29	797	100	71	44
(ubiquitin);(UQ_con)	2	9	11	32	39	10	665	73	45	28
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	2	35	109	120	239	10	242	98	8	29
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	1	76	121	156	228	10	304	100	17	49
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	2	24	24	156	228	67	293	0	0	15
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	4	7	8	156	228	35	253	100	12	4
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)	1	17	31	19	33	59	274	0	0	89
(Ribosomal_S11);(Ribosomal_S21)	1	87	111	107	135	10	1039	96	18	81
(Ribosomal_S18);(Ribosomal_S21)	1	51	74	83	110	10	253	95	15	61
(SecE);(SecY)	1	6	7	13	14	10	1843	86	86	46
(LRR_9);(RRM_1)	1	7	7	7	7	24	556	100	29	100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	1	21	50	21	51	10	495	100	94	100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	2	19	49	21	51	23	566	100	94	90
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	3	17	46	21	51	23	521	100	98	81
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	1	19	49	21	51	10	580	100	94	90
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	2	17	47	21	51	23	250	100	94	81
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	3	15	31	21	51	31	270	100	97	71
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)	1	11	24	28	42	10	813	100	100	39
(ATP-synt);(ATP-synt_Eps)	1	17	30	20	33	10	769	100	100	85
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab)_ (ATP-synt_ab_C)	1	31	62	38	69	53	2007	100	94	82
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	1	5	5	15	15	22	399	100	40	33
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)	1	14	27	19	32	10	649	100	89	74
(C1-set);(MHC_I)_(ig)	1	8	10	8	10	50	1256	100	100	100
(ATP-synt_ab_N)_(ATP-synt_ab);(vATP-synt_E)	1	6	6	6	6	16	766	100	0	100
(B);(C1-set)_(C1-set)	1	5	9	5	9	59	719	89	67	100
(Med18);(Med20)	1	8	8	10	10	80	1518	100	50	80
(CBFD_NFYB_HMF);(Histone)_(Histone_H2A_C)	1	25	140	26	150	12	423	99	96	96
(CBFD_NFYB_HMF);(Histone)_(Histone_H2A_C)	2	8	48	26	150	62	2507	100	98	31
(CBFD_NFYB_HMF);(Histone)_(Histone_H2A_C)	3	5	53	26	150	15	238	0	0	19
(Histone);(Histone)_(Histone_H2A_C)	1	28	147	35	163	44	676	99	96	80
(Histone);(Histone)_(Histone_H2A_C)	2	28	103	35	163	10	2500	100	92	80
(SKIP_SNW);(SYF2)	1	6	6	6	6	10	526	83	0	100
(Bowman-Birk_leg)_(Bowman-Birk_leg);(Trypsin)	1	5	7	6	8	41	588	100	71	83
(Bowman-Birk_leg)_(Bowman-Birk_leg);(Trypsin)	2	5	6	6	8	56	706	83	33	83