Protein Common Interface Database

Clusters with M>=5,SeqId<90 and pair Pfam Architecture

Pfam Architecture	Cluster#	#CFs/Cluster	#Entries/Cluster	#CFs/Group	#Entries/Group	Minimum Seq Identity	Surface Area	In PDBBA(%)	In PISABA(%)	CFs Cluster/Group(%)
(14-3-3);(RBD)_(C1_1)_(PK_Tyr_Ser-Thr)	1	5	5	5	5	83	515	100	0	100
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	72	85	72	91	5	2627	100	39	100
(2Fe-2S_thioredx);(ETC_C1_NDUFA4)	1	10	10	38	38	31	294	100	20	26
(CHCH)_(CHCH);(GRIM-19)	1	6	6	6	6	27	1844	100	33	100
(CI-B14_5a);(Complex1_30kDa)	1	47	47	47	47	83	1282	100	13	100
(CI-B14_5a);(Complex1_49kDa)	1	47	47	47	47	83	1484	100	13	100
(CI-B14_5a);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	41	41	46	46	83	224	100	12	89
(CI-B14_5a);(ETC_C1_NDUFA5)	1	44	44	46	46	83	381	100	11	96
(CI-B14_5a);(Fer4_7)	1	47	47	47	47	83	1001	100	13	100
(CI-B14_5a);(GRIM-19)	1	43	43	46	46	9	474	100	12	93
(CI-B14_5a);(NDUFA12)	1	44	44	46	46	83	495	100	14	96
(Complex1_30kDa);(Complex1_49kDa)	1	83	91	83	91	3	2428	100	30	100
(Complex1_30kDa);(Complex1_LYR)	1	60	60	60	60	17	1054	100	20	100
(Complex1_30kDa);(ETC_C1_NDUFA4)	1	57	57	57	57	29	1327	100	14	100
(Complex1_30kDa);(ETC_C1_NDUFA5)	1	61	61	61	61	30	1410	100	20	100
(Complex1_49kDa);(dNK)	1	42	42	45	45	78	460	100	7	93
(Complex1_49kDa);(ESSS)	1	26	26	37	37	79	228	100	12	70
(Complex1_49kDa);(ETC_C1_NDUFA5)	1	57	57	60	60	30	417	100	21	95
(Complex1_49kDa);(Fer4_7)	1	82	90	82	90	4	1745	100	30	100
(Complex1_49kDa);(GRIM-19)	1	60	60	60	60	22	928	100	20	100
(Complex1_49kDa);(NADHdh)	1	74	79	77	82	3	1097	100	24	96
(Complex1_49kDa);(Oxidored_q2)	1	26	26	43	43	65	255	100	4	60
(Complex1_49kDa);(Oxidored_q4)	1	57	62	69	74	10	460	100	29	83
(Complex1_49kDa);(Oxidored_q5_N)_(Proton_antipo_M)	1	41	41	45	45	66	312	100	7	91
(Complex1_49kDa);(Oxidored_q6)	1	83	91	83	91	1	1456	100	30	100
(Complex1_49kDa);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	48	48	49	49	54	848	100	15	98
(Complex1_49kDa);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_ C)	1	29	29	48	48	64	393	100	10	60
(Complex1_49kDa);(zf-CHCC)	1	39	39	45	45	25	221	100	13	87
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(ETC_C1_NDUFA4)	1	53	53	56	56	29	511	100	15	95
(Complex1_LYR);(ETC_C1_NDUFA4)	1	55	55	55	55	17	656	100	15	100
(Complex1_LYR);(NDUF_B12)	1	51	51	53	53	22	455	100	14	96
(Complex1_LYR);(NDUF_B4)	1	51	51	55	55	61	1305	100	16	93
(Complex1_LYR);(NDUF_B5)	1	48	48	51	51	24	533	100	17	94
(Complex1_LYR);(NDUF_B6)	1	51	51	51	51	25	1017	100	16	100
(Complex1_LYR);(Oxidored_q4)	1	9	9	34	34	63	218	100	0	26
(Complex1_LYR);(Oxidored_q5_N)_(Proton_antipo_M)	1	55	55	59	59	22	410	100	18	93
(Complex1_LYR);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	59	59	59	59	22	1372	100	19	100
(COX1);(COX2_TM)_(COX2)	1	28	86	28	88	15	3567	100	76	100
(COX1);(COX3)	1	29	79	29	79	7	2445	100	73	100
(COX1);(COX4)	1	14	62	18	66	16	1334	100	76	78
(COX1);(COX7a)	1	13	60	15	63	3	263	100	73	87
(COX1);(COX7B)	1	9	55	11	59	84	339	100	76	82
(COX1);(COX7C)	1	20	67	20	68	22	1695	100	67	100
(COX1);(COX8)	1	12	59	12	60	42	1044	100	73	100
(COX2_TM)_(COX2);(COX4)	1	12	59	17	65	16	860	100	78	71
(COX2_TM)_(COX2);(COX6B)	1	20	67	20	68	41	966	100	66	100
(COX2_TM)_(COX2);(COX6C)	1	18	66	18	66	11	1440	100	71	100
(COX3);(COX5B)	1	20	67	20	68	14	899	100	69	100
(COX3);(COX6B)	1	17	64	19	67	41	251	100	70	89
(COX4);(COX5A)	1	14	60	18	66	6	1248	100	73	78
(COX4);(COX6C)	1	9	56	11	59	74	402	100	75	82
(COX4);(COX7B)	1	12	58	12	60	81	1437	100	72	100
(COX4);(COX8)	1	9	55	11	59	42	330	100	78	82
(COX5A);(COX5B)	1	8	8	13	13	35	256	100	38	62
(COX5A);(COX6C)	1	11	57	16	64	17	614	100	70	69
(COX7C);(COX8)	1	10	57	12	60	42	718	100	74	83
(Cytochrom_C1);(UCR_14kD)	1	37	70	40	75	23	402	100	79	92
(Cytochrom_C1);(UCR_hinge)	1	41	74	41	76	2	1087	100	74	100
(Cytochrom_C1);(UCR_UQCRX_QCR9)	1	38	70	41	76	0	845	100	77	93
(Cytochrom_C1);(UcrQ)	1	39	73	39	74	0	730	100	75	100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)	1	36	69	40	75	5	423	100	78	90
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)	1	41	75	41	76	23	1278	100	73	100
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)	1	39	72	39	74	4	1021	100	76	100
(dNK);(ESSS)	1	43	43	47	47	58	413	100	14	91
(dNK);(ETC_C1_NDUFA5)	1	10	10	37	37	78	327	100	0	27
(dNK);(NDUF_C2)	1	50	50	50	50	42	382	100	14	100
(dNK);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	51	51	51	51	54	1583	100	14	100
(ESSS);(NDUF_B5)	1	50	50	51	51	24	891	100	16	98
(ESSS);(NDUFB10)	1	51	51	51	51	31	1518	100	16	100
(ESSS);(Oxidored_q5_N)_(Proton_antipo_M)	1	51	51	51	51	5	1592	100	16	100
(ETC_C1_NDUFA4);(Fer4_7)	1	51	51	54	54	30	248	100	14	94
(ETC_C1_NDUFA4);(NDUFA12)	1	8	8	8	8	26	235	100	12	100
(Fer4_7);(GRIM-19)	1	55	55	59	59	22	357	100	20	93
(Fer4_7);(NDUFA12)	1	58	58	58	58	0	1968	100	19	100
(Fer4_7);(Oxidored_q6)	1	82	90	82	90	1	1281	100	30	100
(Fer4_7);(zf-CHCC)	1	60	60	60	60	4	956	100	18	100
(GRIM-19);(MWFE)	1	58	58	61	61	21	575	100	19	95
(GRIM-19);(NADHdh)	1	62	62	62	62	6	917	100	18	100
(GRIM-19);(NADHdh_A3)	1	54	54	57	57	21	571	100	20	95
(MWFE);(NADHdh)	1	62	62	62	62	2	1536	100	18	100
(MWFE);(Oxidored_q3)	1	53	53	56	56	1	314	100	13	95
(NADH_B2);(NDUF_B7)	1	53	53	53	53	22	686	100	13	100
(NADH_B2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	54	54	54	54	21	1452	100	13	100
(NADH_oxidored);(NDUF_B5)	1	49	49	51	51	24	633	100	16	96
(NADH_oxidored);(NDUFB10)	1	44	44	47	47	9	317	100	9	94
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)	1	50	50	51	51	66	731	100	16	98
(NADHdh);(NADHdh_A3)	1	62	62	62	62	11	660	100	18	100
(NADHdh);(NDUFA12)	1	30	30	41	41	26	228	100	10	73
(NADHdh);(Oxidored_q3)	1	77	82	80	85	0	1032	100	26	96
(NADHdh);(Oxidored_q4)	1	80	85	80	85	3	2690	100	25	100
(NADHdh);(Oxidored_q6)	1	77	82	77	82	0	1168	100	23	100
(NDUF_B12);(PP-binding)	1	52	52	53	53	2	619	100	13	98
(NDUF_B4);(NDUF_B8)	1	47	47	53	53	75	1795	100	9	89
(NDUF_B4);(NDUFB10)	1	48	48	51	51	9	380	100	17	94
(NDUF_B4);(Peptidase_M16)_(Peptidase_M16_C)	1	7	7	7	7	75	305	100	0	100
(NDUF_B5);(NDUF_B6)	1	44	44	47	47	73	255	100	9	94
(NDUF_B5);(NDUF_C2)	1	48	48	51	51	24	682	100	17	94
(NDUF_B5);(NDUFB10)	1	51	51	51	51	9	1077	100	16	100
(NDUF_B5);(Oxidored_q5_N)_(Proton_antipo_M)	1	52	52	52	52	24	1173	100	15	100
(NDUF_B5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	45	45	51	51	54	295	100	11	88
(NDUF_B5);(Tim17)	1	9	9	33	33	67	201	100	0	27
(NDUF_B6);(NDUF_B7)	1	46	46	47	47	69	775	100	9	98
(NDUF_B6);(NDUFB10)	1	47	47	51	51	9	1172	100	9	92
(NDUF_B6);(PP-binding)	1	48	48	51	51	2	526	100	17	94
(NDUF_B6);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	47	47	51	51	64	898	100	9	92
(NDUF_B7);(NDUF_B8)	1	51	51	51	51	21	1298	100	12	100
(NDUF_B7);(NDUFB10)	1	48	48	55	55	9	525	100	10	87
(NDUF_B7);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	54	54	58	58	23	868	100	19	93
(NDUF_B8);(Oxidored_q5_N)_(Proton_antipo_M)	1	49	49	52	52	21	494	100	12	94
(NDUF_B8);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	52	52	52	52	21	1646	100	12	100
(NDUF_C2);(NDUFB10)	1	51	51	51	51	9	703	100	16	100
(NDUF_C2);(Ndufs5)	1	29	29	40	40	70	226	100	7	72
(NDUF_C2);(Oxidored_q5_N)_(Proton_antipo_M)	1	41	41	53	53	66	243	100	10	77
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	52	52	52	52	42	1002	100	15	100
(NDUFA12);(Oxidored_q6)	1	55	55	58	58	26	309	100	20	95
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)	1	49	49	60	60	9	744	100	16	82
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)	2	8	8	60	60	27	967	100	38	13
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	49	49	60	60	9	1069	100	16	82
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	2	8	8	60	60	27	904	100	38	13
(Ndufs5);(Oxidored_q2)	1	61	61	61	61	21	492	100	18	100
(Ndufs5);(Oxidored_q3)	1	48	48	59	59	51	785	100	17	81
(Ndufs5);(Oxidored_q3)	2	8	8	59	59	28	466	100	38	14
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	51	51	51	51	54	873	100	16	100
(Oxidored_q2);(Oxidored_q3)	1	81	86	81	86	0	2831	100	26	100
(Oxidored_q2);(Oxidored_q4)	1	76	81	81	86	1	411	100	27	94
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	52	52	52	52	6	1616	100	15	100
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	56	56	60	60	6	489	100	21	93
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	49	49	52	52	0	753	100	16	94
(Oxidored_q3);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	7	7	7	7	21	367	100	57	100
(Oxidored_q4);(Oxidored_q6)	1	41	46	64	69	24	506	100	26	64
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)	1	52	52	52	52	54	1172	100	15	100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_N)_(Proton_ antipo_M)_(NADH5_C)	1	61	61	61	61	27	2210	100	20	100
(Oxidored_q5_N)_(Proton_antipo_M);(Tim17)	1	42	42	55	55	64	219	100	14	76
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)	1	31	52	40	75	21	398	88	71	78
(Peptidase_M16)_(Peptidase_M16_C);(UCR_6-4kD)	1	10	22	13	26	82	330	100	77	77
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)	1	25	43	34	69	26	257	100	77	74
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)	1	39	73	39	74	21	837	100	75	100
(PP-binding);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	44	44	47	47	2	292	100	16	94
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)	1	47	47	51	51	41	966	100	15	92
(Proton_antipo_M)_(NADH_dehy_S2_C);(Tim17)	1	48	48	50	50	54	513	100	15	96
(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C);(Tim17)	1	47	47	56	56	18	625	100	19	84
(Tim17);(UcrQ)	1	7	7	7	7	69	355	100	0	100
(UCR_14kD);(UcrQ)	1	35	68	38	73	17	465	100	81	92
(UCR_6-4kD);(UCR_UQCRX_QCR9)	1	11	24	14	27	79	556	100	75	79
(UCR_hinge);(UcrQ)	1	17	39	26	55	62	297	100	79	65
(2Fe-2S_thioredx);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Moly bdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	14	14	14	14	52	845	100	36	100
(2Fe-2S_thioredx);(NDUFV3)	1	46	46	46	46	70	992	100	13	100
(CHCH);(GRIM-19)	1	55	55	55	55	22	1706	100	16	100
(CHCH);(MWFE)	1	55	55	55	55	21	929	100	16	100
(CHCH);(NADHdh)	1	36	36	48	48	57	258	100	22	75
(CHCH);(NADHdh_A3)	1	49	49	52	52	39	1098	100	16	94
(CHCH);(NDUF_B5)	1	45	45	49	49	24	618	100	16	92
(CHCH);(NDUF_C2)	1	48	48	49	49	42	639	100	17	98
(CHCH);(Ndufs5)	1	46	46	49	49	57	531	100	17	94
(CHCH);(Oxidored_q5_N)_(Proton_antipo_M)	1	42	42	45	45	67	257	100	10	93
(CHCH);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	42	42	45	45	57	257	100	10	93
(CI-B14_5a);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_F e4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	6	6	7	7	86	460	100	33	86
(Complex1_30kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molyb dop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	14	14	14	14	47	532	100	36	100
(Complex1_30kDa);(NmrA)	1	36	36	39	39	82	544	100	8	92
(Complex1_49kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molyb dop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	14	14	14	14	52	919	100	36	100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(Fer2_4)_(NADH-G_4Fe-4S_ 3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	14	14	14	14	52	1478	100	36	100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(NDUFV3)	1	46	46	46	46	70	1130	100	13	100
(Complex1_LYR);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdo p_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	14	14	14	14	27	467	100	36	100
(Complex1_LYR);(NmrA)	1	36	36	39	39	82	381	100	8	92
(Cytochrom_C1);(UCR_TM)_(Rieske)	1	26	54	30	65	0	785	100	78	87
(dNK);(NADH_dh_m_C1)	1	47	47	50	50	58	577	100	17	94
(ETC_C1_NDUFA4);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybd op_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	13	13	13	13	29	2029	100	31	100
(ETC_C1_NDUFA4);(NDUFV3)	1	38	38	41	41	70	261	100	13	93
(ETC_C1_NDUFA4);(NmrA)	1	36	36	39	39	82	347	100	8	92
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(Fer4_7)	1	14	14	14	14	52	525	100	36	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(L51_S25_CI-B8)	1	14	14	14	14	33	1179	100	36	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(NDUFA12)	1	13	13	13	13	33	698	100	31	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(zf-CHCC)	1	13	13	13	13	26	468	100	31	100
(NADH_dh_m_C1);(NDUF_C2)	1	50	50	50	50	42	850	100	16	100
(NmrA);(Oxidored_q4)	1	9	9	32	32	73	238	100	0	28
(NmrA);(Oxidored_q6)	1	36	36	39	39	82	679	100	8	92
(NmrA);(zf-CHCC)	1	36	36	39	39	82	515	100	8	92
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)	1	29	58	30	65	29	868	100	72	97
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)	1	29	58	30	65	31	632	100	72	97
(UCR_TM)_(Rieske);(UcrQ)	1	26	56	30	65	6	585	100	77	87
(2Fe-2S_thioredx);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4 )_(Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	46	724	100	10	100
(CI-B14_5a);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Mol ybdopterin)_(NADH_dhqG_C)	1	33	33	36	36	84	491	100	12	92
(Complex1_30kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)	1	38	38	39	39	50	682	100	11	97
(Complex1_49kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	54	865	100	10	100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(Fer2_4)_(NADH-G_4Fe-4S_ 3)_(Molybdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	54	1307	100	10	100
(Complex1_LYR);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_( Molybdopterin)_(NADH_dhqG_C)	1	36	36	39	39	32	569	100	11	92
(ETC_C1_NDUFA4);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_ (Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	38	1956	100	10	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(Fer4_7)	1	37	37	39	39	54	522	100	11	95
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(L51_S25_CI-B8)	1	39	39	39	39	39	1196	100	10	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(NDUFA12)	1	39	39	39	39	34	661	100	10	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(zf-CHCC)	1	38	38	39	39	31	470	100	11	97
(Complex1_30kDa);(NAD_binding_10)	1	15	15	15	15	33	588	100	33	100
(Complex1_LYR);(NAD_binding_10)	1	13	13	13	13	29	588	100	38	100
(ETC_C1_NDUFA4);(NAD_binding_10)	1	14	14	14	14	30	374	100	29	100
(NAD_binding_10);(Oxidored_q4)	1	7	7	9	9	31	352	100	29	78
(NAD_binding_10);(Oxidored_q6)	1	15	15	15	15	33	1026	100	33	100
(NAD_binding_10);(zf-CHCC)	1	12	12	12	12	30	569	100	33	100
(NDUF_C2);(Proton_antipo_M)	1	9	9	9	9	21	1201	100	33	100
(Ndufs5);(Proton_antipo_M)	1	9	9	9	9	23	520	100	33	100
(Oxidored_q2);(Proton_antipo_M)	1	22	27	22	27	5	1533	100	48	100
(Oxidored_q3);(Proton_antipo_M)	1	20	25	20	25	14	1119	100	52	100
(Oxidored_q4);(Proton_antipo_M)	1	18	23	20	25	17	327	100	57	90
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)	1	9	9	9	9	17	1502	100	44	100
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)	1	10	10	15	20	17	1663	100	10	67
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)	2	5	10	15	20	27	466	100	70	33
(Proton_antipo_M);(Proton_antipo_N)_(Proton_antipo_M)	1	7	12	7	12	19	1718	100	58	100
(CHCH);(MRP-S35)	1	29	29	29	29	85	376	100	7	100
(CHCH);(Ribosomal_S11)	1	5	5	11	11	79	255	100	0	45
(CHCH);(Ribosomal_S2)	1	9	9	13	13	75	245	100	22	69
(CHCH);(Ribosomal_S21)	1	29	29	32	32	85	919	100	7	91
(CHCH);(Ribosomal_S6)	1	29	29	29	29	85	509	100	7	100
(CHCH);(Ribosomal_S7)	1	29	29	32	32	85	833	100	7	91
(CR6_interact);(Img2)	1	5	5	10	10	76	209	100	20	50
(CR6_interact);(MRP-L51)	1	30	30	30	30	76	421	100	13	100
(CR6_interact);(Ribosomal_L27A)	1	29	29	29	29	76	1068	100	14	100
(CR6_interact);(Ribosomal_L28)	1	29	29	29	29	76	380	100	14	100
(CR6_interact);(Ribosomal_L33)	1	29	29	29	29	76	486	100	14	100
(CR6_interact);(Ribosomal_L4)	1	29	29	29	29	76	460	100	14	100
(DAP3);(MRP-L46)	1	16	16	18	18	85	299	100	0	89
(DAP3);(MRP-S28)	1	28	28	37	37	84	1107	100	7	76
(DAP3);(Ribosomal_S11)	1	5	5	5	5	4	492	100	0	100
(DAP3);(Ribosomal_S7)	1	29	29	36	36	85	914	100	7	81
(DAP3);(Ribosomal_S7)	2	7	7	36	36	23	1099	86	0	19
(DAP3);(Ribosomal_S9)	1	35	35	42	42	17	959	100	6	83
(DAP3);(Ribosomal_S9)	2	7	7	42	42	23	754	86	0	17
(DUF1713);(Ribosomal_S15)	1	29	29	29	29	5	617	100	7	100
(Img2);(MRP-63)	1	30	30	30	30	72	597	100	13	100
(KOW)_(ribosomal_L24);(MRP-L27)	1	30	30	30	30	22	1360	100	13	100
(KOW)_(ribosomal_L24);(MRP-L47)	1	36	36	36	36	7	1718	100	14	100
(KOW)_(ribosomal_L24);(Ribosomal_L23)	1	30	30	35	35	81	772	100	17	86
(L51_S25_CI-B8);(MRP-63)	1	30	30	30	30	72	371	100	13	100
(L51_S25_CI-B8);(MRP-S22)	1	29	29	29	29	68	458	100	7	100
(L51_S25_CI-B8);(MRP-S26)	1	29	29	29	29	75	604	100	7	100
(L51_S25_CI-B8);(MRP-S32)	1	30	30	30	30	8	676	100	17	100
(L51_S25_CI-B8);(Ribosomal_L13)	1	39	39	43	43	18	782	97	13	91
(L51_S25_CI-B8);(Ribosomal_L20)	1	31	31	31	31	22	594	100	13	100
(L51_S25_CI-B8);(Ribosomal_L4)	1	5	5	5	5	3	1530	100	0	100
(L51_S25_CI-B8);(Ribosomal_L50)	1	30	30	39	39	80	690	100	17	77
(L51_S25_CI-B8);(Ribosomal_L50)	2	9	9	39	39	9	753	89	11	23
(L51_S25_CI-B8);(Ribosomal_S16)	1	29	29	29	29	87	631	100	7	100
(L51_S25_CI-B8);(Ribosomal_S17)	1	29	29	29	29	86	1317	100	7	100
(L51_S25_CI-B8);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	82	537	100	7	100
(Mitoc_L55);(MRP-L28)	1	28	28	28	28	70	870	100	14	100
(Mitoc_L55);(MRP-L46)	1	28	28	28	28	70	1207	100	14	100
(Mitoc_L55);(Ribosomal_S10)	1	28	28	28	28	70	960	100	14	100
(MRP_L53);(Ribosomal_L10)	1	29	29	29	29	85	853	100	14	100
(MRP_L53);(Ribosomal_S18)	1	30	30	30	30	85	522	100	13	100
(MRP-63);(MRPL52)	1	30	30	30	30	72	383	100	13	100
(MRP-63);(Ribosomal_L10)	1	29	29	29	29	72	509	100	14	100
(MRP-63);(Ribosomal_L16)	1	29	29	29	29	72	320	100	14	100
(MRP-63);(Ribosomal_L27A)	1	29	29	29	29	72	526	100	14	100
(MRP-63);(Ribosomal_L30)	1	29	29	29	29	72	1217	100	14	100
(MRP-63);(Ribosomal_S18)	1	26	26	26	26	72	247	100	8	100
(MRP-L27);(Ribosomal_L23)	1	38	38	38	38	5	1453	97	13	100
(MRP-L27);(Ribosomal_L28)	1	29	29	29	29	77	504	100	14	100
(MRP-L27);(Ribosomal_L34)	1	38	38	38	38	22	438	97	13	100
(MRP-L28);(MRP-L46)	1	35	35	35	35	11	2266	100	17	100
(MRP-L28);(PBP)	1	9	9	13	13	22	876	89	11	69
(MRP-L28);(Ribosomal_S10)	1	30	30	30	30	72	1822	100	17	100
(MRP-L46);(Ribosomal_S10)	1	30	30	30	30	76	362	100	17	100
(MRP-L47);(MRP-L51)	1	29	29	29	29	82	233	100	14	100
(MRP-L47);(PDCD9)	1	29	29	29	29	83	558	100	14	100
(MRP-L47);(Ribosomal_L28)	1	30	30	30	30	83	453	100	17	100
(MRP-L47);(Ribosomal_L34)	1	30	30	30	30	83	514	100	17	100
(MRP-L51);(Ribonucleas_3_3)_(dsrm)	1	30	30	30	30	82	369	100	13	100
(MRP-L51);(Ribosomal_L27A)	1	29	29	29	29	82	287	100	14	100
(MRP-L51);(Ribosomal_L28)	1	29	29	29	29	82	325	100	14	100
(MRP-L51);(Ribosomal_L35p)	1	29	29	29	29	80	400	100	14	100
(MRP-L51);(Ribosomal_L4)	1	29	29	29	29	82	1832	100	14	100
(MRPL52);(PBP)	1	10	10	15	15	81	503	100	10	67
(MRPL52);(Ribosomal_L20)	1	29	29	29	29	81	395	100	14	100
(MRPL52);(Ribosomal_L21p)	1	31	31	31	31	7	671	100	13	100
(MRPL52);(Ribosomal_L30)	1	29	29	31	31	81	1059	100	14	94
(MRP-S22);(MRP-S34)	1	28	28	29	29	68	261	100	7	97
(MRP-S22);(Ribosomal_S16)	1	29	29	29	29	68	1091	100	7	100
(MRP-S22);(Ribosomal_S18)	1	29	29	29	29	68	2014	100	7	100
(MRP-S22);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	68	1188	100	7	100
(MRP-S23);(MRP-S35)	1	29	29	29	29	82	907	100	7	100
(MRP-S23);(Ribosomal_S18)	1	29	29	29	29	80	463	100	7	100
(MRP-S23);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	82	585	100	7	100
(MRP-S24);(MRP-S28)	1	28	28	28	28	84	1361	100	7	100
(MRP-S24);(MRP-S31)	1	29	29	29	29	75	277	100	7	100
(MRP-S24);(MRP-S33)	1	29	29	29	29	83	536	100	7	100
(MRP-S24);(Ribosomal_S10)	1	29	29	29	29	13	595	100	7	100
(MRP-S24);(Ribosomal_S14)	1	29	29	29	29	86	985	100	7	100
(MRP-S24);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	82	516	100	7	100
(MRP-S24);(Ribosomal_S9)	1	20	20	23	23	78	225	100	10	87
(MRP-S26);(MRP-S34)	1	29	29	29	29	75	731	100	7	100
(MRP-S26);(Ribosomal_S17)	1	27	27	27	27	75	264	100	7	100
(MRP-S26);(Ribosomal_S18)	1	29	29	29	29	75	794	100	7	100
(MRP-S26);(Ribosomal_S18)	2	29	29	29	29	75	605	100	7	100
(MRP-S27);(MRP-S34)	1	27	27	27	27	81	1339	100	7	100
(MRP-S27);(Ribosomal_L19)	1	14	14	14	14	81	529	100	0	100
(MRP-S27);(Ribosomal_S18)	1	27	27	27	27	81	297	100	7	100
(MRP-S28);(MRP-S31)	1	28	28	28	28	75	1161	100	7	100
(MRP-S28);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	7	7	30	1496	86	0	100
(MRP-S28);(Ribosomal_S9)	1	28	28	35	35	78	1313	100	7	80
(MRP-S28);(Ribosomal_S9)	2	7	7	35	35	30	672	86	0	20
(MRP-S31);(MRP-S33)	1	29	29	29	29	75	672	100	7	100
(MRP-S31);(Ribosomal_S10)	1	29	29	29	29	75	250	100	7	100
(MRP-S31);(Ribosomal_S14)	1	29	29	29	29	75	605	100	7	100
(MRP-S32);(Ribonucleas_3_3)_(dsrm)	1	29	29	29	29	69	681	100	17	100
(MRP-S32);(Ribosomal_L13)	1	29	29	29	29	30	295	100	14	100
(MRP-S32);(Ribosomal_L20)	1	28	28	28	28	69	882	100	14	100
(MRP-S32);(Ribosomal_L21p)	1	28	28	28	28	69	821	100	14	100
(MRP-S32);(Ribosomal_L22)	1	29	29	29	29	69	408	100	14	100
(MRP-S32);(TGS)_(tRNA_SAD)	1	17	17	17	17	73	398	100	6	100
(MRP-S33);(Ribosomal_S14)	1	36	36	36	36	22	1209	97	6	100
(MRP-S33);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	82	1026	100	7	100
(MRP-S34);(Ribosomal_S16)	1	23	23	30	30	82	230	100	9	77
(MRP-S34);(Ribosomal_S18)	1	29	29	29	29	82	763	100	7	100
(MRP-S35);(Ribosomal_S18)	1	20	20	24	24	83	218	100	10	83
(MRP-S35);(Ribosomal_S2)	1	29	29	29	29	7	1101	100	7	100
(MRP-S35);(Ribosomal_S21)	1	29	29	29	29	85	698	100	7	100
(PBP);(RF-1)	1	31	31	31	31	77	966	100	13	100
(PBP);(Ribosomal_L18p)	1	30	30	30	30	88	2743	100	13	100
(PBP);(Ribosomal_L27)	1	29	29	36	36	87	1817	100	14	81
(PBP);(Ribosomal_L27A)	1	29	29	34	34	88	256	100	14	85
(PBP);(Ribosomal_L35p)	1	29	29	29	29	80	1115	100	14	100
(PBP);(Ribosomal_S10)	1	30	30	30	30	76	648	100	13	100
(PDCD9);(Ribosomal_L17)	1	27	27	27	27	82	372	100	15	100
(PDCD9);(Ribosomal_L2)_(Ribosomal_L2_C)	1	29	29	29	29	85	788	100	14	100
(PDCD9);(Ribosomal_L23)	1	29	29	29	29	81	537	100	14	100
(PDCD9);(Ribosomal_L28)	1	29	29	29	29	83	826	100	14	100
(RF-1);(Ribosomal_L18p)	1	28	28	28	28	77	442	100	14	100
(RF-1);(Ribosomal_L27A)	1	30	30	30	30	77	1555	100	13	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L13)	1	33	33	33	33	14	805	97	12	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L20)	1	29	29	29	29	87	372	100	14	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L21p)	1	29	29	29	29	77	319	100	14	100
(Ribosom_S12_S23);(Ribosomal_S17)	1	320	545	364	651	0	221	100	16	88
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	2	15	15	33	34	84	591	100	7	45
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	3	15	15	33	34	84	607	100	7	45
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	4	13	13	33	34	84	425	100	8	39
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	5	13	13	33	34	84	346	100	8	39
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	6	12	12	33	34	84	298	100	8	36
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	7	11	11	33	34	84	332	100	9	33
(Ribosomal_L10);(Ribosomal_L16)	1	30	30	30	30	85	1235	100	17	100
(Ribosomal_L10);(Ribosomal_L37)	1	18	18	18	18	76	256	100	11	100
(Ribosomal_L10);(Ribosomal_S18)	1	28	28	28	28	85	236	100	11	100
(Ribosomal_L13);(Ribosomal_L21p)	1	6	6	17	17	23	248	100	17	35
(Ribosomal_L13);(Ribosomal_L22)	1	39	39	44	44	21	532	97	15	89
(Ribosomal_L13);(Ribosomal_S18)	1	29	29	29	29	85	2364	100	14	100
(Ribosomal_L14);(Ribosomal_L3)	1	224	297	232	305	0	437	92	9	97
(Ribosomal_L16);(Ribosomal_L27)	1	53	145	66	181	7	252	100	3	80
(Ribosomal_L16);(Ribosomal_L30)	1	30	30	30	30	81	430	100	17	100
(Ribosomal_L16);(Ribosomal_L37)	1	28	28	28	28	20	419	100	14	100
(Ribosomal_L17);(Ribosomal_L19)	1	28	28	28	28	80	635	100	18	100
(Ribosomal_L17);(Ribosomal_L3)	1	32	32	37	37	29	588	100	16	86
(Ribosomal_L17);(TGS)_(tRNA_SAD)	1	27	27	27	27	89	742	100	15	100
(Ribosomal_L20);(Ribosomal_L21p)	1	423	621	423	621	0	979	100	14	100
(Ribosomal_L20);(Ribosomal_L22)	1	30	30	30	30	86	273	100	17	100
(Ribosomal_L21p);(Ribosomal_L30)	1	9	9	9	9	31	642	89	11	100
(Ribosomal_L21p);(Ribosomal_S18)	1	29	29	29	29	77	540	100	14	100
(Ribosomal_L22);(Ribosomal_L32p)	1	428	626	428	626	0	469	100	15	100
(Ribosomal_L22);(TGS)_(tRNA_SAD)	1	30	30	30	30	78	358	100	13	100
(Ribosomal_L27);(Ribosomal_S10)	1	29	29	29	29	76	396	100	14	100
(Ribosomal_L3);(TGS)_(tRNA_SAD)	1	30	30	30	30	82	577	100	13	100
(Ribosomal_L32p);(TGS)_(tRNA_SAD)	1	29	29	29	29	85	262	100	14	100
(Ribosomal_L33);(Ribosomal_L35p)	1	8	8	15	19	31	219	100	0	53
(Ribosomal_L4);(Ribosomal_L50)	1	29	29	38	38	80	1076	100	14	76
(Ribosomal_L4);(Ribosomal_L50)	2	9	9	38	38	9	1602	89	11	24
(Ribosomal_S10);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	7	7	36	1513	86	0	100
(Ribosomal_S11);(Ribosomal_S9)	1	6	6	6	6	4	1264	100	0	100
(Ribosomal_S16);(Ribosomal_S18)	1	29	29	29	29	84	565	100	7	100
(Ribosomal_S18);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	82	590	100	7	100
(Ribosomal_S18);(Ribosomal_S6)	1	404	667	407	696	0	900	100	10	99
(Ribosomal_S2);(Ribosomal_S21)	1	26	26	36	36	75	236	100	8	72
(Ribosomal_S2);(Ribosomal_S9)	1	36	36	36	36	24	1158	97	6	100
(Ribosomal_S21);(Ribosomal_S9)	1	22	22	25	25	78	233	100	9	88
(G-alpha);(V-set)_(V-set)	1	28	28	28	28	43	547	100	0	100
(G-alpha);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	76	76	76	76	10	1330	100	7	100
(G-gamma);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	83	91	83	92	0	2071	100	20	100
(G-alpha);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	6	7	6	7	51	1184	100	71	100
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	17	29	17	29	31	2229	100	86	100
(G-alpha);(V-set)	1	57	57	57	57	5	844	100	2	100
(GP120);(ig)_(C2-set)	1	34	46	34	46	21	1037	100	39	100
(Ig_3)_(C1-set);(V-set)_(C1-set)	1	12	16	12	16	25	1887	100	75	100
(Ribosomal_L13);(Ribosomal_L6)_(Ribosomal_L6)	1	9	69	14	74	32	272	100	1	64
(Ribosomal_L18p);(Ribosomal_L5)_(Ribosomal_L5_C)	1	12	12	16	16	71	229	100	25	75
(Ribosomal_L29);(SRP54_N)_(SRP54)_(SRP_SPB)	1	6	6	8	8	27	410	83	33	75
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)	1	210	223	210	223	0	764	89	11	100
(SRP14);(SRP9-21)	1	9	11	9	11	81	1354	91	36	100
(A2M_recep)_(NTR);(MG1)_(MG2)_(MG3)_(MG4)_(A2M_BRD)	1	8	12	8	12	25	756	100	100	100
(Sushi)_(Sushi);(Trypsin)	1	5	6	5	6	30	777	100	100	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	1	85	297	85	362	4	619	100	68	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	2	85	355	85	362	8	604	100	72	100
(AAA)_(Cdc6_C);(AAA_16)_(ORC4_C)	2	6	6	13	13	46	2180	100	33	46
(AAA)_(Cdc6_C);(AAA_16)_(ORC5_C)	2	6	6	13	13	34	458	100	33	46
(AAA_16)_(ORC4_C);(AAA_16)_(ORC5_C)	1	24	24	24	24	10	2674	100	8	100
(AAA_16)_(ORC4_C);(ORC3_N)_(ORC3_ins)_(ORC_WH_C)	1	16	16	17	17	11	279	100	6	94
(AAA_16)_(ORC5_C);(ORC2)	1	23	23	23	23	21	883	100	4	100
(AAA_16)_(ORC5_C);(ORC3_N)_(ORC3_ins)_(ORC_WH_C)	1	18	18	18	18	11	1823	100	6	100
(ORC3_N)_(ORC3_ins)_(ORC_WH_C);(ORC6)	1	7	7	8	8	0	676	100	0	88
(BCAS2);(Myb_DNA-binding)_(Myb_DNA-binding)_(Myb_Cef)	1	11	11	11	11	25	1747	100	18	100
(Cwf_Cwc_15);(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EF G_IV)_(EFG_C)	1	12	12	12	12	43	566	100	8	100
(Cwf_Cwc_15);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-s nRNA_bdg)_(PRP8_domainIV)_(JAB)_(PROCT)	1	18	18	18	18	22	1596	100	17	100
(Cwf_Cwc_15);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )	1	15	15	15	15	3	1400	100	13	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(LSM)	1	34	34	34	34	34	490	100	18	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_bdg)_(P RP8_domainIV)_(JAB)_(PROCT)	1	17	17	17	17	34	5834	100	12	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	16	16	16	16	45	994	100	19	100
(G10);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_bd g)_(PRP8_domainIV)_(JAB)_(PROCT)	1	13	13	13	13	54	1461	100	15	100
(G10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	2	11	11	26	26	42	910	100	9	42
(Pro_isomerase);(SKIP_SNW)	1	10	10	10	10	3	968	100	10	100
(Pro_isomerase);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	11	11	11	11	42	732	100	9	100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	12	12	20	20	42	794	100	8	60
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	18	18	18	18	2	1245	100	17	100
(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(WD40)	1	10	10	10	10	42	930	100	0	100
(cwf21);(MIF4G)_(MA3)	1	8	8	8	8	0	339	100	0	100
(cwf21);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_ bdg)_(PRP8_domainIV)_(JAB)_(PROCT)	1	14	14	14	14	0	1196	100	14	100
(Isy1);(Saf4_Yju2)	1	7	7	7	7	3	758	100	0	100
(LRR_9);(RRM_1)	1	24	24	24	24	24	577	100	12	100
(Mago_nashi);(RRM_1)	1	15	15	15	15	0	1187	100	67	100
(MIF4G)_(MA3);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6- snRNA_bdg)_(PRP8_domainIV)_(JAB)_(PROCT)	1	5	5	5	5	28	1919	100	20	100
(RRM_1);(SKIP_SNW)	1	17	17	17	17	21	1283	100	0	100
(Bud13);(RRM_1)	1	12	13	12	13	1	1106	100	8	100
(G10);(RRM_1)	1	6	6	7	7	21	213	100	0	86
(MMS1_N)_(CPSF_A);(PHF5)	1	16	16	16	16	27	608	100	12	100
(MMS1_N)_(CPSF_A);(SF3b1)	1	14	14	14	14	18	1491	100	14	100
(MMS1_N)_(CPSF_A);(SF3b10)	1	24	24	24	24	22	1503	100	21	100
(SF3b1);(SF3b10)	1	12	12	12	12	18	1072	100	17	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM_N)_(MCM_OB)_(MCM)_(MCM _lid)_(MCM6_C)	1	23	23	23	23	44	3222	100	30	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM2_N)_(MCM_N)_(MCM_OB)_( MCM)_(MCM_lid)	1	22	22	23	23	30	2846	100	50	96
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)_(MCM6_C);(MCM2_N)_(MCM_N)_( MCM_OB)_(MCM)_(MCM_lid)	1	27	27	27	27	33	2789	100	41	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_5);(RNA_pol_Rpb6)	1	10	18	10	18	80	2107	100	67	100
(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol _Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	17	38	17	38	80	265	100	68	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)	1	136	173	142	181	41	986	100	39	96
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)	1	71	71	72	72	42	1698	100	15	99
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)	2	69	69	72	72	42	301	100	16	96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	80	97	80	97	42	8076	100	11	100
(eIF-6);(NOG1_N)_(NOG1)_(NOGCT)	1	12	12	12	12	46	2319	100	17	100
(eIF-6);(Ribosomal_L14)	1	38	38	38	38	60	833	100	37	100
(eIF-6);(Ribosomal_L24e)	1	9	9	10	10	23	459	100	33	90
(eIF-6);(Ribosomal_L3)	1	22	22	22	22	61	253	100	32	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	1	177	190	177	190	0	768	87	9	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L34e)	1	5	5	5	5	84	464	100	0	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	131	144	132	145	5	465	83	12	99
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)	1	105	118	105	118	2	491	80	14	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L7Ae)	1	5	5	5	5	71	465	100	0	100
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)	1	201	214	203	216	4	663	88	9	99
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	1	200	213	200	213	3	509	88	9	100
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	2	151	164	200	213	2	276	85	10	76
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L19e)	1	9	9	9	9	46	377	100	11	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L22)	1	8	8	8	8	46	533	100	12	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L22e)	1	10	10	10	10	46	883	100	10	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L24e)	1	5	5	5	5	46	2380	100	0	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L3)	1	12	12	12	12	46	638	100	17	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L31e)	1	10	10	10	10	46	316	100	10	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L39)	1	10	10	10	10	46	919	100	10	100
(Peptidase_M24);(Ribosomal_L23eN)_(Ribosomal_L23)	1	20	20	20	20	26	504	100	30	100
(Ribosomal_L1);(Ribosomal_L36e)	1	10	10	20	20	25	336	100	10	50
(Ribosomal_L13);(Ribosomal_L18A)	1	200	213	200	213	12	691	88	9	100
(Ribosomal_L13);(Ribosomal_L35Ae)	1	156	159	167	180	2	239	91	11	93
(Ribosomal_L13e);(Ribosomal_L15e)	1	201	214	201	214	24	509	88	9	100
(Ribosomal_L13e);(Ribosomal_L18)	1	162	175	169	182	5	234	86	9	96
(Ribosomal_L13e);(Ribosomal_L27A)	1	202	215	202	215	2	1459	88	9	100
(Ribosomal_L13e);(Ribosomal_L29)	1	208	221	208	221	2	910	89	9	100
(Ribosomal_L13e);(Ribosomal_L36e)	1	198	211	198	211	4	642	88	9	100
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	108	108	115	115	31	220	96	6	94
(Ribosomal_L14);(Ribosomal_L24e)	1	212	286	212	286	0	525	91	8	100
(Ribosomal_L15e);(Ribosomal_L29)	1	203	216	203	216	7	355	88	10	100
(Ribosomal_L15e);(Ribosomal_L36e)	1	202	215	202	215	7	528	88	9	100
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	199	212	201	214	37	268	88	9	99
(Ribosomal_L15e);(Ribosomal_L7Ae)	1	186	259	186	259	2	943	90	8	100
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)	1	182	195	183	196	5	257	87	9	99
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	208	221	208	221	0	1115	89	10	100
(Ribosomal_L18A);(Ribosomal_L21e)	1	200	213	200	213	0	889	88	9	100
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)	1	205	218	205	218	22	474	89	10	100
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	97	110	99	112	35	242	78	14	98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)	1	215	288	215	288	0	1254	91	7	100
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)	1	158	171	158	171	1	299	85	11	100
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	201	214	201	214	0	598	88	9	100
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	193	206	193	206	0	856	88	9	100
(Ribosomal_L22);(Ribosomal_L6e)	1	6	6	7	7	82	266	100	0	86
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)	1	173	186	181	194	2	222	87	10	96
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)	1	21	34	23	36	8	342	0	0	91
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)	1	30	30	33	33	47	219	90	17	91
(Ribosomal_L27A);(Ribosomal_L36e)	1	160	173	168	181	4	240	86	9	95
(Ribosomal_L29);(Ribosomal_L37e)	1	55	55	66	66	28	216	100	4	83
(Ribosomal_L32e);(Ribosomal_L6e)	1	99	112	99	112	2	511	79	14	100
(Ribosomal_L35Ae);(Ribosomal_L6e)	1	112	125	112	125	2	858	81	14	100
(Ribosomal_L36e);(Ribosomal_L7Ae)	1	167	180	167	180	4	304	86	11	100
(Ribosomal_L37ae);(Ribosomal_L7Ae)	1	10	10	13	13	58	271	100	20	77
(Ribosomal_L37e);(Ribosomal_L39)	1	135	148	144	157	21	226	83	11	94
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)	1	185	198	188	201	39	240	87	10	98
(NGP1NT)_(MMR_HSR1);(NOG1_N)_(NOG1)_(NOGCT)	1	6	6	6	6	46	1216	100	17	100
(Ribosomal_L7Ae);(WD40)_(WD40)	1	21	21	21	21	33	467	100	5	100
(AARP2CN)_(RIBIOP_C);(Ribosom_S12_S23)	1	6	6	6	6	30	670	100	83	100
(KH_2)_(Ribosomal_S3_C);(S10_plectin)	1	206	219	206	219	0	877	88	6	100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)	1	184	197	188	201	3	487	87	7	98
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)	1	224	237	224	237	2	467	89	10	100
(Ribosom_S12_S23);(Ribosomal_S30)	1	173	186	174	187	10	446	86	9	99
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)	1	77	77	93	93	29	355	99	0	83
(Ribosomal_L7Ae);(S4)	1	18	18	18	18	61	256	100	6	100
(Ribosomal_S11);(Ribosomal_S26e)	1	200	213	200	213	2	1109	88	7	100
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)	1	23	23	25	25	34	256	100	13	92
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)	1	66	66	80	80	2	234	98	12	82
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)	1	63	65	76	78	66	209	78	11	83
(Ribosomal_S14);(S10_plectin)	1	193	206	196	209	0	294	87	6	98
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)	1	235	248	235	248	3	718	90	8	100
(Ribosomal_S17_N)_(Ribosomal_S17);(RS4NT)_(S4)_(Ribosomal_S4 e)_(KOW)_(40S_S4_C)	1	7	7	8	8	78	214	100	29	88
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	1	133	133	133	133	1	1261	99	8	100
(Ribosomal_S17e);(Ribosomal_S3Ae)	1	66	66	71	71	4	232	100	6	93
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	195	208	195	208	10	529	88	8	100
(Ribosomal_S19e);(Ribosomal_S7)	1	7	7	11	11	79	265	100	43	64
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)	1	135	135	135	135	0	1490	99	8	100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	132	132	132	132	3	529	99	8	100
(Ribosomal_S21e);(Ribosomal_S27e)	1	84	97	85	98	36	427	75	9	99
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)	1	215	228	215	228	2	1317	89	8	100
(Ribosomal_S21e);(Ribosomal_S8)	1	184	197	186	199	3	266	87	8	99
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	1	227	240	227	240	0	536	90	9	100
(Ribosomal_S24e);(S4)	1	107	120	117	130	30	227	80	11	91
(Ribosomal_S25);(Ribosomal_S7)	1	213	226	213	226	2	600	88	8	100
(Ribosomal_S26e);(Ribosomal_S28e)	1	11	11	18	18	43	225	91	27	61
(Ribosomal_S26e);(Ribosomal_S3Ae)	1	136	149	148	161	6	265	83	6	92
(Ribosomal_S27e);(Ribosomal_S7e)	1	79	79	88	88	2	332	97	6	90
(Ribosomal_S28e);(Ribosomal_S7)	1	255	268	255	268	0	1107	90	9	100
(Ribosomal_S30);(S4)	1	171	184	171	184	1	506	86	10	100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)	1	188	201	189	202	10	300	88	7	99
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)	1	192	205	192	205	0	369	88	9	100
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)	1	105	105	109	109	5	585	98	7	96
(KH_8)_(KH_1);(Ribosomal_S11)	1	17	17	17	17	50	930	100	29	100
(Ribosomal_S17e);(Ribosomal_S2)	1	78	91	78	91	2	956	73	8	100
(Ribosomal_S2);(Ribosomal_S21e)	1	79	92	79	92	0	1506	73	9	100
(Brix);(MMR_HSR1)_(AARP2CN)_(RIBIOP_C)	1	12	12	12	12	49	261	100	0	100
(Brix);(Mpp10)	1	25	25	27	27	32	1362	100	4	93
(Brix);(Nop14)	1	13	13	13	13	24	993	100	0	100
(Brix);(Ribosomal_S9)	1	22	22	22	22	58	312	100	5	100
(Brix);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)	1	16	16	16	16	55	338	100	6	100
(CBF);(EMG1)	1	13	13	15	15	67	386	100	0	87
(CBF);(Ribosomal_S13)	1	9	9	9	9	35	347	100	0	100
(CBF);(WD40)_(Utp12)	1	14	14	14	14	67	892	100	0	100
(CBF);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)	1	15	15	15	15	30	608	100	0	100
(DUF1726)_(Helicase_RecD)_(GNAT_acetyltr_2)_(tRNA_bind_2);(P ALB2_WD40)_(NUC153)	1	12	12	12	12	43	525	100	0	100
(DUF1726)_(Helicase_RecD)_(GNAT_acetyltr_2)_(tRNA_bind_2);(R ibosomal_S6e)	1	9	9	9	9	63	384	100	0	100
(EMG1);(Nop14)	1	22	22	22	22	24	1159	100	5	100
(EMG1);(Ribosomal_S7)	1	21	21	21	21	69	384	100	5	100
(Fcf1);(Fibrillarin)	1	24	24	24	24	53	670	100	4	100
(Fcf1);(Ribosomal_S8)	1	23	23	23	23	52	364	100	4	100
(Fcf1);(S4)	1	27	27	27	27	52	847	100	4	100
(Fcf1);(Sas10_Utp3)_(Sas10)	1	24	24	24	24	30	679	100	4	100
(Fcf1);(WD40)_(WD40)_(WD40)_(Sof1)	1	20	20	20	20	49	564	100	5	100
(Fcf1);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)	1	10	10	10	10	53	258	100	10	100
(Fcf2);(Fibrillarin)	1	23	23	23	23	30	1460	100	4	100
(Fcf2);(MMR_HSR1)_(AARP2CN)_(RIBIOP_C)	1	12	12	12	12	31	1176	100	8	100
(Fcf2);(Sas10_Utp3)_(Sas10)	1	16	16	16	16	30	278	100	6	100
(Fcf2);(U3_assoc_6)_(TPR_14)	1	15	15	15	15	74	989	100	0	100
(Fibrillarin);(NOP5NT)_(Nop)	1	26	26	26	26	39	1319	100	4	100
(Fibrillarin);(Ribosomal_L7Ae)	1	22	22	27	30	61	456	100	5	81
(Fibrillarin);(Sas10_Utp3)_(Sas10)	1	23	23	23	23	30	1094	100	4	100
(Fibrillarin);(Utp11)	1	22	22	22	22	29	998	100	5	100
(Ge1_WD40)_(WD40)_(BING4CT);(U3_assoc_6)_(TPR_14)	1	14	14	14	14	74	388	100	0	100
(KH_8);(Ribosomal_S11)	1	18	18	21	21	69	860	100	6	86
(KH_8);(Ribosomal_S3Ae)	1	11	11	11	11	69	406	100	9	100
(KH_8);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)	1	9	9	9	9	55	323	100	11	100
(KH_8);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)	2	9	9	9	9	45	382	100	11	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Mpp10)	1	24	24	24	24	32	1827	100	4	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Ribosom_S12_S23)	1	27	27	27	27	49	1252	100	4	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(RTC)_(RTC_insert)_(RTC)	1	28	28	28	28	37	2704	100	4	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Sas10_Utp3)_(Sas10)	1	17	17	17	17	31	713	100	6	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Utp11)	1	14	14	14	14	29	2451	100	7	100
(Mpp10);(Nop14)	1	10	10	10	10	32	615	100	0	100
(Mpp10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	16	16	23	23	32	1586	100	6	70
(Mpp10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(Utp12)	2	15	15	23	23	32	1011	100	7	65
(Nop14);(Ribosom_S12_S23)	1	19	19	19	19	24	625	100	5	100
(Nop14);(Ribosomal_S13)	1	9	9	9	9	75	506	100	0	100
(Nop14);(RTC)_(RTC_insert)_(RTC)	1	17	17	17	17	24	763	100	6	100
(NOP5NT)_(Nop);(Ribosomal_L7Ae)	1	26	26	26	26	39	502	100	4	100
(NOP5NT)_(Nop);(U3_assoc_6)_(TPR_14)	1	23	23	23	23	24	768	100	4	100
(NOP5NT)_(Nop);(U3snoRNP10)_(HEAT)_(BP28CT)	1	6	6	6	6	24	734	100	17	100
(NOP5NT)_(Nop);(Utp11)	1	18	18	18	18	29	278	100	6	100
(NOP5NT)_(Nop);(Utp14)	1	21	21	21	21	28	592	100	5	100
(NOP5NT)_(Nop);(WD40)_(WD40)	1	19	19	19	19	33	415	100	5	100
(NOP5NT)_(Nop);(WD40)_(WD40)_(WD40)_(Sof1)	1	23	23	23	23	49	902	100	4	100
(Nrap)_(Nrap_D2)_(Nrap_D3)_(Nrap_D4)_(Nrap_D5)_(Nrap_D6);(Ri bosomal_S3Ae)	1	18	18	18	18	27	1081	100	0	100
(Nrap)_(Nrap_D2)_(Nrap_D3)_(Nrap_D4)_(Nrap_D5)_(Nrap_D6);(RR M_Rrp7)_(RRP7)	1	23	23	23	23	25	2522	100	4	100
(PALB2_WD40)_(NUC153);(Ribosomal_S6e)	1	14	14	14	14	43	686	100	0	100
(PALB2_WD40)_(NUC153);(Ribosomal_S8e)	1	14	14	14	14	43	759	100	0	100
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)	1	15	15	15	15	34	1107	100	47	100
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)	2	12	12	15	15	23	759	100	50	80
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)	3	10	10	15	15	34	1017	100	40	67
(Ribosomal_L1);(RRT14)	1	7	7	7	7	63	977	100	0	100
(Ribosomal_L7Ae);(Utp11)	1	17	17	17	17	29	592	100	6	100
(Ribosomal_S13);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)	1	15	15	15	15	30	491	100	7	100
(Ribosomal_S24e);(Ribosomal_S4)_(S4)	1	9	9	9	9	31	258	100	22	100
(Ribosomal_S28e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	22	22	22	22	44	607	100	5	100
(Ribosomal_S7);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)	1	20	20	20	20	30	509	100	5	100
(Ribosomal_S7);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	14	14	14	14	55	234	100	7	100
(Ribosomal_S7e);(Utp14)	1	14	14	14	14	30	308	100	7	100
(Ribosomal_S7e);(WD40)_(WD40)_(WD40)_(Sof1)	1	19	19	19	19	49	417	100	5	100
(Ribosomal_S8);(WD40)_(WD40)_(WD40)_(Sof1)	1	19	19	19	19	49	441	100	5	100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	21	21	21	21	55	512	100	5	100
(RNase_PH);(RNase_PH)_(RNase_PH_C)	1	17	17	17	17	3	1604	100	53	100
(RNase_PH);(RNase_PH)_(RNase_PH_C)	2	17	17	17	17	18	1162	100	53	100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)	1	17	17	17	17	28	789	100	53	100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)	2	17	17	17	17	26	1196	100	47	100
(RTC)_(RTC_insert)_(RTC);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_ (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	21	21	21	21	37	473	100	5	100
(S4);(Sas10_Utp3)_(Sas10)	1	22	22	22	22	30	432	100	5	100
(U3_assoc_6)_(TPR_14);(Utp14)	1	21	21	21	21	24	1182	100	5	100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)	1	20	20	20	20	2	565	100	5	100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)_(WD40)_(Sof1)	1	20	20	20	20	24	383	100	5	100
(U3_snoRNA_assoc);(Utp11)	1	21	21	21	21	23	600	100	5	100
(U3_snoRNA_assoc);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	16	16	16	16	88	1233	100	0	100
(U3snoRNP10)_(HEAT)_(BP28CT);(WD40)_(WD40)	1	7	7	7	7	24	1274	100	14	100
(U3snoRNP10)_(HEAT)_(BP28CT);(WD40)_(WD40)_(WD40)_(Sof1)	1	5	5	5	5	24	477	100	20	100
(Utp11);(WD40)_(WD40)	1	9	9	9	9	29	372	100	0	100
(Utp14);(WD40)_(WD40)_(WD40)_(Sof1)	1	21	21	21	21	28	2311	100	5	100
(Ribosomal_S24e);(Sas10_Utp3)	1	11	11	11	11	28	424	100	0	100
(S4);(Sas10_Utp3)	1	11	11	11	11	28	1429	100	0	100
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C)	1	10	10	10	10	23	519	90	0	100
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C)	1	10	10	10	10	36	335	90	0	100
(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C);(S4)	1	5	5	5	5	36	429	80	0	100
(ABC_tran);(FecCD)	1	6	8	6	8	23	1097	100	100	100
(MlaD);(MlaE)	1	12	12	13	13	59	562	100	33	92
(MlaD);(MlaE)	2	11	11	13	13	59	956	100	36	85
(MlaD);(MlaE)	3	9	9	13	13	59	328	100	33	69
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	142	155	149	162	3	260	84	5	95
(Ribosomal_L21e);(Ribosomal_L29e)	1	186	199	186	199	0	478	87	9	100
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	52	52	55	55	82	491	100	2	95
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)	1	93	106	93	106	32	660	77	8	100
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)	1	45	45	61	61	57	228	98	13	74
(Ribosomal_L31);(Ribosomal_S13)	1	134	267	157	300	0	403	100	13	85
(Ribosomal_L31);(Ribosomal_S14)	2	6	6	19	19	23	275	83	0	32
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)	1	32	45	32	45	56	266	47	4	100
(ABC_tran)_(BCA_ABC_TP_C);(LptF_LptG)	1	11	11	11	11	11	984	100	64	100
(ABC_tran)_(CFTR_R);(V-set)	1	5	5	5	5	78	796	100	80	100
(ABC_tran)_(OB_MalK)_(TOBE_2);(BPD_transp_1)	1	7	17	7	17	12	823	100	94	100
(IL12p40_C)_(fn3);(IL23)	1	12	12	12	12	13	957	100	100	100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	1	119	146	134	163	5	504	100	67	89
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	2	118	145	134	163	12	575	100	68	88
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	3	108	136	134	163	5	545	100	71	81
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab)_(T3SS_ATPase_C)	1	152	181	152	182	18	2083	100	61	100
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)	1	91	91	91	91	28	644	99	11	100
(Acetyltransf_1);(TPR_1)_(NARP1)	1	5	5	5	5	30	2635	100	60	100
(DNA_RNApol_7kD);(RNA_pol_A_bac)	1	112	221	112	229	0	584	100	60	100
(DNA_RNApol_7kD);(RNA_pol_N)	1	22	26	48	98	21	199	100	69	46
(RNA_pol_A_bac);(RNA_pol_L_2)	1	111	222	112	229	4	2031	100	68	99
(RNA_pol_A_bac);(RNA_pol_N)	1	112	221	112	229	20	1112	100	74	100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	48	127	52	165	42	361	100	53	92
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	67	172	67	180	42	1683	99	73	100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	66	179	66	179	35	960	99	48	100
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	73	184	75	188	21	454	99	65	97
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	66	179	66	179	45	1538	99	72	100
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	75	188	75	188	25	1334	99	56	100
(RNA_POL_M_15KD)_(TFIIS_C);(TFIIF_alpha)	1	10	10	13	13	19	252	100	0	77
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	67	180	67	180	52	9151	99	58	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)	1	17	60	36	87	51	232	98	50	47
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)	1	67	180	67	180	5	2118	99	72	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	66	177	67	180	4	1903	99	71	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	66	179	67	180	35	1503	99	71	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	59	110	60	111	5	590	99	49	98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)	1	22	23	22	23	33	2193	100	17	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)	1	21	67	35	86	51	289	99	45	60
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(SHS2_Rpb7-N)_(S1)	1	12	12	24	70	24	283	100	33	50
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	23	24	23	24	33	1705	100	12	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_alpha)	1	19	19	19	19	17	1175	100	5	100
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)	1	73	125	73	127	1	2027	99	48	100
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)	1	68	119	69	123	4	433	98	45	99
(SHS2_Rpb7-N)_(S1);(TFIIE_alpha)_(TF_Zn_Ribbon)	1	6	6	6	6	55	516	100	0	100
(TBP)_(TBP);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	12	13	12	13	39	419	100	31	100
(TFIIE_alpha)_(TF_Zn_Ribbon);(TFIIE_beta)_(TFA2_Winged_2)	1	7	7	7	7	11	1318	100	14	100
(TFIIF_alpha);(TFIIF_beta_N)_(TFIIF_beta)	1	11	11	11	11	87	1960	100	9	100
(ACR_tran);(Ank)_(Ank_2)_(Ank_2)	1	7	25	7	25	62	288	100	44	100
(ACR_tran);(Ank)_(Ank_2)_(Ank_2)	2	7	25	7	25	62	809	100	44	100
(ACR_tran);(HlyD_D23)	1	7	7	7	7	58	1248	100	71	100
(ACR_tran);(HlyD_D23)	2	7	7	7	7	58	733	100	71	100
(ACR_tran);(HlyD_D23)	3	6	6	7	7	58	242	100	67	86
(Actin);(ARPC4)	1	8	24	8	24	65	788	100	83	100
(Actin);(P16-Arc)	1	6	22	6	22	25	535	100	91	100
(Actin);(P21-Arc)	1	9	25	9	25	32	796	100	76	100
(Actin);(P34-Arc)	1	10	26	10	26	45	1511	100	81	100
(ARPC4);(P16-Arc)	1	11	27	11	27	25	837	100	78	100
(ARPC4);(P34-Arc)	1	9	25	9	25	11	1991	100	84	100
(P16-Arc);(WD40)_(WD40)_(Lactonase)	1	6	21	6	22	69	619	100	90	100
(Actin);(F_actin_cap_B)	1	7	7	7	7	51	806	100	43	100
(Actin);(F-actin_cap_A)	1	9	9	9	9	51	593	100	44	100
(Actin);(F-actin_cap_A)	2	6	6	9	9	51	403	100	50	67
(F_actin_cap_B);(F-actin_cap_A)	1	25	29	25	29	10	3549	100	76	100
(C1-set);(Ig_2)_(ig)	1	7	9	8	10	81	582	100	11	88
(Ig_2)_(ig);(MHC_I)_(C1-set)	1	8	10	8	10	6	348	100	10	100
(EF-hand_1)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(EzrA)	1	9	11	9	11	33	1253	82	27	100
(EF-hand_7)_(EF-hand_7);(Myosin_head)_(IQ)	1	7	7	7	7	44	1137	100	57	100
(Actin);(Myosin_N)_(Myosin_head)	1	6	6	6	6	38	710	100	0	100
(EF-hand_7)_(EF-hand_7);(Troponin)	1	5	5	6	6	74	1831	100	100	83
(Actin);(Gelsolin)	1	12	41	13	42	72	1189	100	100	92
(Actin);(Gelsolin)	2	6	25	13	42	72	400	0	0	46
(Actin);(Gelsolin)	3	6	25	13	42	72	272	0	0	46
(Actin);(WH2)	1	10	12	10	12	27	982	100	100	100
(GCP_N_terminal)_(GCP_C_terminal);(Tubulin)_(Tubulin_C)	1	6	6	6	6	14	2133	100	17	100
(Actin);(RPEL)	1	6	7	6	7	28	916	100	100	100
(Activin_recp);(TGF_beta)	1	13	17	16	21	12	377	88	88	81
(Activin_recp);(TGF_beta)	2	13	17	16	21	0	746	100	94	81
(Activin_recp);(TGF_beta)	3	8	9	16	21	7	752	100	56	50
(ecTbetaR2);(TGF_beta)	1	5	5	5	5	76	486	80	60	100
(ETF);(ETF)_(ETF_alpha)	1	12	18	12	18	9	3192	100	94	100
(EnY2);(Sgf11_N)_(Sgf11)	1	9	12	9	12	23	1362	100	92	100
(EnY2);(zf-UBP)_(UCH)	1	9	12	9	12	37	918	100	92	100
(Sgf11_N)_(Sgf11);(zf-UBP)_(UCH)	1	9	12	9	12	23	1684	100	92	100
(TAF)_(TAF6_C);(TFIID-31kDa)	1	9	9	9	9	20	1800	100	44	100
(TFIID_20kDa);(TFIID-31kDa)	1	8	8	8	8	12	634	100	38	100
(ubiquitin);(zf-UBP)_(UCH)	1	5	5	5	5	38	1718	100	60	100
(Adaptin_N);(Arf)	1	7	7	7	7	12	857	100	14	100
(Clat_adaptor_s);(Clat_adaptor_s)_(Adap_comp_sub)	1	7	9	9	11	40	494	100	78	78
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)	1	11	17	11	17	21	1231	100	82	100
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)	2	5	11	11	17	82	495	0	0	45
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_Penton_B)	1	7	7	8	8	53	1384	100	29	88
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)	1	6	6	6	6	52	803	100	17	100
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)	2	6	6	6	6	52	1239	100	17	100
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)	3	6	6	6	6	52	1427	100	17	100
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)	4	6	6	6	6	52	417	100	17	100
(AdenylateSensor);(AMPKBI)	1	8	20	8	20	22	1987	100	100	100
(AMPKBI);(CBS)_(CBS)_(CBS)_(CBS)	1	5	12	5	12	88	901	100	100	100
(ECSIT);(Ribosomal_S11)	1	5	5	5	5	4	367	100	0	100
(Cyclin_N);(Pkinase)	1	6	6	7	13	12	1470	100	67	86
(Pkinase);(Tat)	1	5	6	5	6	14	227	100	83	100
(Cyclin_N)_(TFIIB);(Pkinase)	1	5	8	5	8	14	1022	100	75	100
(Globin);(NEAT)	1	6	6	6	6	45	624	100	50	100
(Pkinase);(RIIa)_(cNMP_binding)_(cNMP_binding)	1	6	9	6	9	36	1933	100	78	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	1	8	16	8	16	41	420	100	94	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	2	8	16	8	16	41	691	100	94	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	3	5	13	8	16	43	379	0	0	62
(Alba);(Rpp20)	1	10	10	10	10	7	805	100	30	100
(POP1)_(POPLD);(Rpp20)	1	7	7	7	7	20	1252	100	0	100
(RNase_P_p30);(RNase_P_Rpp14)	1	11	11	11	11	10	951	100	18	100
(RNase_P_p30);(RNase_P_Rpp14)	2	11	11	11	11	10	671	100	18	100
(RNase_P_p30);(RNase_P-MRP_p29)	1	9	9	9	9	12	1500	100	0	100
(RNase_P-MRP_p29);(Rpr2)	1	8	8	11	11	10	1142	100	12	73
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(FAD_binding_5)_(CO_deh_flav_ C)	1	9	26	9	26	13	1187	100	100	100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(Fer2)_(Fer2_2)	1	8	23	8	23	19	2050	100	100	100
(FAD_binding_5)_(CO_deh_flav_C);(Fer2)_(Fer2_2)	1	8	23	8	23	13	1344	100	100	100
(Alpha_E1_glycop);(Alpha_E2_glycop)	1	14	16	15	17	56	808	100	25	93
(Alpha_E1_glycop);(Alpha_E2_glycop)_(Alpha_E1_glycop)	1	19	19	19	19	15	2453	100	0	100
(Alpha_E1_glycop);(Alpha_E2_glycop)_(Alpha_E1_glycop)	2	15	15	19	19	15	529	100	0	79
(Amidase);(GatB_N)_(GatB_Yqey)	1	5	9	5	9	37	1363	100	100	100
(GatB_N)_(GatB_Yqey);(Glu-tRNAGln)	1	5	11	5	11	28	1786	100	100	100
(Aminotran_5);(NifU_N)	1	7	12	8	13	23	913	100	92	88
(ANAPC2);(ANAPC4_WD40)_(ANAPC4)	1	10	10	10	10	79	540	100	40	100
(ANAPC2);(zf-ANAPC11)	1	11	11	11	11	79	1692	100	36	100
(CDC45);(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)	1	17	17	17	17	22	768	100	47	100
(CDC45);(MCM2_N)_(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)	1	16	16	16	16	22	534	100	50	100
(CDC45);(Sld5)	1	15	15	16	16	22	265	100	47	94
(CDC45);(Sld5)_(SLD5_C)	1	13	13	13	13	25	850	100	31	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)	1	17	17	17	17	27	574	100	47	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)	2	17	17	17	17	15	433	100	47	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)	3	13	13	17	17	15	362	100	46	76
(Sld5);(Sld5)_(SLD5_C)	1	15	16	15	16	6	1355	100	44	100
(Sld5);(Sld5)_(SLD5_C)	2	13	14	15	16	18	1973	100	36	87
(Sld5);(Sld5)_(SLD5_C)	4	8	9	15	16	18	259	100	56	53
(ANATO)_(A2M)_(TED_complement)_(A2M_recep)_(NTR);(MG1)_(MG2) _(MG3)_(MG4)_(A2M_BRD)	1	5	7	5	7	28	4482	100	100	100
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan);(PMP22_Claudin)	1	7	7	9	9	67	600	100	43	78
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan);(PMP22_Claudin)	2	5	5	9	9	67	364	100	60	56
(Stathmin);(Tubulin)_(Tubulin_C)	1	7	144	7	144	56	658	100	90	100
(Stathmin);(Tubulin)_(Tubulin_C)	2	7	143	7	144	56	1546	100	87	100
(Skp1_POZ);(ubiquitin)	1	35	76	35	77	2	1089	100	80	100
(CSN8_PSD8_EIF3K);(PCI)_(Rpn3_C)	1	51	51	51	51	10	1939	100	29	100
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)	1	31	31	32	32	66	625	100	19	97
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_I D_OB)_(AAA)_(AAA_lid_3)	1	15	15	15	15	29	2168	100	20	100
(JAB)_(MitMem_reg);(VWA_2)	1	44	44	44	44	4	609	100	20	100
(PCI)_(Rpn3_C);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEA T_2)_(RPN2_C)	1	31	31	32	32	72	594	100	19	97
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_(RPN6_C_he lix)	1	12	12	13	13	43	617	100	33	92
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)	1	58	58	58	58	37	1413	100	28	100
(Thrombin_light);(Trypsin)	1	94	366	94	428	6	1173	100	99	100
(Thrombin_light);(Trypsin)	2	21	44	94	428	75	264	2	14	22
(Thrombin_light);(Trypsin)	4	7	18	94	428	75	349	0	0	7
(Thrombin_light);(Trypsin)	5	6	6	94	428	74	599	0	17	6
(Antistasin);(Trypsin)	1	6	6	6	6	10	625	100	100	100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_( RPN6_C_helix)	2	7	7	19	19	43	387	100	14	37
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)	1	12	12	22	22	37	312	100	33	55
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)	2	7	7	22	22	37	839	100	14	32
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)	1	29	29	29	29	31	321	100	38	100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	1	30	30	30	30	31	1614	100	37	100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	2	18	18	30	30	31	257	100	39	60
(JAB)_(MitMem_reg);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	9	9	16	16	66	278	100	22	56
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(ZapB)_(Prot_ATP_ID_OB)_( AAA)_(AAA_lid_3)	1	31	31	31	31	37	2701	100	35	100
(Proteasome_A_N)_(Proteasome);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)	2	5	5	19	19	61	376	100	0	26
(Proteasome_A_N)_(Proteasome);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)	3	5	5	19	19	51	503	100	0	26
(RPN6_N)_(PCI)_(RPN6_C_helix);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)	1	11	11	19	19	43	405	100	36	58
(RPN6_N)_(PCI)_(RPN6_C_helix);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)	2	6	6	19	19	43	471	100	33	32
(RPN7)_(PCI);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	12	12	22	22	37	850	100	33	55
(RPN7)_(PCI);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	2	8	8	22	22	37	324	100	25	36
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(P C_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)	1	13	13	13	13	74	685	100	8	100
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome _A_N)_(Proteasome)	1	11	11	11	11	60	297	100	27	100
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome _A_N)_(Proteasome)	2	11	11	11	11	52	644	100	27	100
(Proteasom_Rpn13);(ubiquitin)	1	5	8	5	8	32	462	100	0	100
(ubiquitin);(UCH)	1	24	32	27	36	9	1705	100	100	89
(GTP_EFTU)_(GTP_EFTU_D2)_(RF3_C);(Ribosom_S12_S23)	1	8	9	8	9	72	447	100	11	100
(PCRF)_(RF-1);(Ribosomal_L11_N)_(Ribosomal_L11)	1	6	6	8	10	43	268	100	33	75
(Apocytochr_F_N)_(Apocytochr_F_C);(Cytochrom_B_C)	1	5	7	5	14	57	1143	100	100	100
(Cytochrom_B_C);(Cytochrome_B)	1	5	14	5	14	74	3094	100	100	100
(SecE);(SecY)	1	9	9	12	12	10	1697	100	67	75
(Ras);(RBD)	1	5	10	5	10	51	593	100	30	100
(RRM_1);(Torus)_(RRM_1)	1	17	17	17	17	21	1805	100	6	100
(Arabino_trans_N)_(Arabinose_trans)_(Arabino_trans_C);(PP-bi nding)	1	7	7	7	7	41	842	100	0	100
(C1-set);(V-set)_(C1-set)	1	7	7	72	157	29	1625	100	86	10
(BBS1);(PHTB1_N)_(PHTB1_C)	1	5	5	5	5	87	2237	100	0	100
(ArfA);(PCRF)_(RF-1)	1	10	10	10	10	42	1140	100	40	100
(CENP-L);(CENP-N)	1	5	5	5	5	67	1480	100	80	100
(V-set);(V-set)_(C1-set)	1	8	11	43	56	40	598	82	9	19
(V-set);(V-set)_(C1-set)	2	5	5	43	56	24	835	100	40	12
(MIF4G)_(MIF4G_like)_(MIF4G_like_2);(RRM_1)	1	11	13	11	13	13	1470	100	77	100
(ArsA_ATPase);(CHD5)	1	6	7	6	7	9	516	100	57	100
(ASF1_hist_chap);(Histone)	1	7	10	7	10	10	899	100	70	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	225	295	226	297	9	1531	100	51	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	44	66	44	67	47	2772	100	48	100
(SNAP);(Synaptobrevin)	1	5	5	7	7	9	299	100	0	71
(Synaptobrevin);(Syntaxin)_(SNARE)	1	26	29	26	30	0	1402	100	72	100
(ATP-synt);(ATP-synt_Eps)	1	103	114	103	114	10	996	100	75	100
(ATP-synt_DE_N);(ATP-synt_Eps)	1	82	83	82	83	12	1037	100	70	100
(Mt_ATP-synt_B);(Mt_ATP-synt_D)	1	43	43	44	44	3	1393	100	35	98
(ATP_synt_H);(V_ATPase_I)	1	21	21	21	21	22	1953	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	1	15	15	15	15	51	1362	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	2	15	15	15	15	51	922	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_D)	1	10	10	10	10	26	573	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_D)	2	7	7	10	10	26	500	100	0	70
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_D)	3	7	7	10	10	26	494	100	0	70
(ATP-synt_ab_N)_(ATP-synt_ab);(vATP-synt_E)	1	14	14	14	14	34	847	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)	1	22	25	23	29	26	577	100	36	96
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)	2	22	25	23	29	26	481	100	32	96
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)	3	22	25	23	29	26	335	100	36	96
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)	1	17	17	19	19	24	447	100	0	89
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)	2	17	17	19	19	24	956	100	0	89
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)	3	17	17	19	19	24	665	100	0	89
(ATP-synt_D);(ATP-synt_F)	1	41	45	42	48	10	1490	100	31	98
(ATP-synt_S1);(vATP-synt_AC39)	1	17	17	19	19	24	421	100	0	89
(Tetraspanin);(V_ATPase_I)	1	6	6	6	6	52	633	100	0	100
(V_ATPase_I);(V-ATPase_C)	1	13	13	18	18	36	436	100	0	72
(V_ATPase_I);(V-ATPase_G)	1	6	6	6	6	52	468	100	0	100
(V_ATPase_I);(V-ATPase_H_N)_(V-ATPase_H_C)	1	12	12	12	12	23	989	100	0	100
(V_ATPase_I);(vATP-synt_AC39)	1	5	5	5	5	52	846	100	0	100
(V-ATPase_C);(V-ATPase_G)	1	8	9	10	11	36	392	100	22	80
(V-ATPase_C);(vATP-synt_E)	1	12	12	19	20	33	381	100	0	63
(V-ATPase_C);(vATP-synt_E)	2	8	9	19	20	33	452	100	22	42
(V-ATPase_G);(vATP-synt_E)	1	28	29	28	29	31	1622	100	7	100
(V-ATPase_H_N)_(V-ATPase_H_C);(vATP-synt_E)	1	7	7	8	8	23	639	100	0	88
(ATP-synt_S1);(Renin_r)	1	13	13	13	13	83	624	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_D)	1	19	22	20	26	26	650	100	45	95
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_D)	2	19	22	20	26	26	453	100	45	95
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_D)	3	18	21	20	26	26	425	100	38	90
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(V-ATPase_G)	1	10	10	10	10	64	228	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(vATP-synt_E)	1	19	19	20	20	15	1503	95	26	95
(ATP_synth_reg);(ATP-synt_A)	1	18	18	24	24	62	390	100	28	75
(ATP-synt_8);(ATP-synt_A)	1	25	25	25	25	4	927	100	24	100
(ATP-synt_8);(Mit_proteolip)	1	10	10	20	20	4	599	100	50	50
(ATP-synt_8);(Mt_ATP-synt_B)	1	7	7	23	23	89	294	100	57	30
(ATP-synt_A);(Mit_proteolip)	1	10	10	20	20	62	580	100	50	50
(ATP-synt_A);(WRW)	1	20	20	25	25	32	691	100	25	80
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(IATP)	1	11	11	20	20	25	425	100	36	55
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(IATP)	1	23	23	23	23	16	684	100	17	100
(ATP-synt_E);(ATP-synt_G)	1	20	20	20	20	88	646	100	30	100
(ATP-synt_E);(Mt_ATP-synt_B)	1	10	10	20	20	3	258	100	50	50
(ATP-synt_F6);(Mt_ATP-synt_B)	1	17	17	25	25	4	1255	100	41	68
(ATP-synt_F6);(Mt_ATP-synt_D)	1	14	14	23	23	87	404	100	50	61
(ATP-synt_G);(Mt_ATP-synt_B)	1	19	19	20	20	3	456	100	26	95
(ATP-synt_G);(WRW)	1	10	10	20	20	32	500	100	50	50
(Mt_ATP-synt_B);(WRW)	1	20	20	25	25	1	557	100	30	80
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)	1	56	67	61	72	5	1263	100	42	92
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_DE_N )_(ATP-synt_DE)	1	15	16	32	33	5	318	88	12	47
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_DE_N )_(ATP-synt_DE)	1	14	14	32	33	38	317	100	14	44
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_DE_N )_(ATP-synt_DE)	2	11	11	32	33	38	450	100	18	34
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	1	22	23	30	31	5	248	96	4	73
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	2	21	22	30	31	17	250	95	5	70
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)	1	16	26	21	31	21	677	100	85	76
(ATP1G1_PLM_MAT8);(Na_K-ATPase)	1	7	40	8	43	29	360	100	100	88
(Cation_ATPase_N)_(E1-E2_ATPase)_(Cation_ATPase)_(Cation_ATP ase_C);(Na_K-ATPase)	1	9	45	9	46	30	2036	100	100	100
(ATP-grasp_2)_(Ligase_CoA);(CoA_binding)_(Ligase_CoA)	1	10	28	10	30	10	1946	100	100	100
(B1);(V-set)_(C1-set)	1	6	18	6	18	60	642	100	11	100
(B);(C1-set)_(C1-set)	1	8	12	8	12	56	717	92	67	100
(B56);(STPPase_N)_(Metallophos)	1	5	6	5	6	67	887	100	50	100
(Bac_export_1);(Bac_export_3)	1	15	15	15	15	18	1046	100	40	100
(Bac_export_1);(FliP)	1	15	15	15	15	18	1945	100	40	100
(Bac_export_1);(FliP)	2	15	15	15	15	18	2120	100	40	100
(Bac_export_3);(FliP)	1	15	15	15	15	22	1179	100	40	100
(Barstar);(Ribonuclease)	1	5	14	5	14	19	765	100	0	100
(Phage_sheath_1)_(Phage_sheath_1C);(Phage_T4_gp19)	1	5	5	5	5	46	652	100	40	100
(Fer4_7);(PsaA_PsaB)	1	27	30	27	30	0	803	100	40	100
(Fer4_7);(PsaA_PsaB)	2	27	30	27	30	3	400	100	37	100
(Bcl-2);(Bclx_interact)	1	17	27	20	31	0	993	100	100	85
(Bcl-2);(BH4)_(Bcl-2)	1	8	9	8	9	10	1000	100	78	100
(Bcl-2);(BID)	1	5	8	6	9	10	902	100	75	83
(Bcl-2);(PUMA)	1	5	5	7	8	13	978	100	60	71
(Bclx_interact);(BH4)_(Bcl-2)	1	13	14	13	14	10	1006	100	100	100
(eRF1_1)_(eRF1_2)_(eRF1_3);(Ribosom_S12_S23)	1	5	5	5	5	34	342	100	0	100
(Ribosom_S12_S23);(RLI)_(Fer4)_(ABC_tran)_(ABC_tran)	1	7	7	7	7	43	472	100	14	100
(Ribosomal_L10)_(RL10P_insert)_(Ribosomal_60s);(Ribosomal_L1 1_N)_(Ribosomal_L11)	1	9	9	9	9	25	267	100	0	100
(Ribosomal_L13);(Ribosomal_L14e)	1	26	26	26	26	4	926	100	12	100
(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	5	5	5	5	27	227	100	20	100
(Ribosomal_L19e);(Ribosomal_S17_N)_(Ribosomal_S17)	1	8	8	18	18	58	271	100	0	44
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	78	78	79	79	87	500	99	1	99
(Ribosomal_L32e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	68	68	71	71	87	227	99	1	96
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	83	83	83	83	41	870	99	1	100
(Ribosomal_L4)_(Ribos_L4_asso_C);(Ribosomal_L6e_N)_(Ribosoma l_L6e)	1	76	76	77	77	44	352	99	1	99
(Ribosomal_L6)_(Ribosomal_L6);(RLI)_(Fer4)_(ABC_tran)_(ABC_t ran)	1	8	8	8	8	51	291	100	0	100
(CSN8_PSD8_EIF3K);(PCI)	2	7	8	15	16	3	1498	100	38	47
(eIF-1a);(Ribosom_S12_S23)	1	33	33	33	33	8	388	97	18	100
(eIF-1a);(Ribosomal_S19)	1	5	5	5	5	24	352	100	0	100
(eIF-3_zeta);(Ribosomal_S28e)	1	9	9	9	9	60	545	100	0	100
(eIF-3_zeta);(Ribosomal_S7)	1	9	9	9	9	60	721	100	0	100
(eIF-3c_N)_(PCI);(PCI)	1	8	8	10	10	14	1704	100	38	80
(eIF-3c_N)_(PCI);(Ribosomal_S27e)	1	13	13	14	14	28	572	100	15	93
(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C);(S1)_(EIF_2_alpha)	1	17	17	17	17	25	688	100	24	100
(bCoV_S1_N)_(bCoV_S1_RBD);(Peptidase_M2)	1	5	5	5	5	9	902	100	40	100
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	1	14	17	37	40	10	575	6	6	38
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	2	6	7	37	40	13	623	100	43	16
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	3	6	6	37	40	87	564	100	50	16
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	5	5	6	37	40	13	411	100	50	14
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)	1	18	24	34	41	9	556	0	0	53
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)	2	14	20	34	41	9	763	100	15	41
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)	3	10	15	34	41	9	385	100	20	29
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	1	5	5	28	28	74	238	100	0	18
(Beta-lactamase2);(BLIP)	1	7	14	7	14	37	1214	100	100	100
(BH3);(BH4)_(Bcl-2)	1	5	7	5	7	9	987	100	86	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	1	10	42	10	42	25	1733	100	100	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	2	10	42	10	42	25	1584	100	100	100
(BIR);(Nbl1_Borealin_N)	1	5	6	5	6	88	1238	100	100	100
(Pescadillo_N)_(BRCT_2);(Ribosomal_L30_N)_(Ribosomal_L30)	1	13	13	13	13	89	1275	100	15	100
(Bot1p);(Ribosomal_S16)	1	7	7	7	7	23	1603	86	0	100
(Bot1p);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	7	7	23	978	86	0	100
(Bot1p);(Ribosomal_S8)	1	7	7	7	7	23	296	86	0	100
(DAP3);(Ribosomal_S13)	1	7	7	7	7	23	455	86	0	100
(ECH_2);(MRP-S25)	1	7	7	7	7	36	446	86	0	100
(ECH_2);(Ribosomal_S2)	1	8	8	8	8	24	561	88	0	100
(KOW);(Mitoc_mL59)	1	9	9	9	9	24	1009	89	11	100
(KOW);(MRP-L47)	1	9	9	9	9	24	1377	89	11	100
(L31);(Ribosomal_L16)	1	9	9	9	9	40	707	89	11	100
(L31);(Ribosomal_L30)	1	10	10	10	10	22	915	90	10	100
(L51_S25_CI-B8);(MRP-L20)	1	9	9	9	9	24	455	89	11	100
(Mit_ribos_Mrp51);(MRP-S25)	1	7	7	7	7	22	3228	86	0	100
(Mit_ribos_Mrp51);(Ribosomal_S18)	1	7	7	7	7	22	1384	86	0	100
(Mit_ribos_Mrp51);(Ribosomal_S2)	1	7	7	7	7	22	1214	86	0	100
(Mit_ribos_Mrp51);(Ribosomal_S21)	1	7	7	7	7	22	398	86	0	100
(Mit_ribos_Mrp51);(Sod_Fe_N)_(Sod_Fe_C)	1	7	7	7	7	22	589	86	0	100
(Mitoc_mL59);(Ribosomal_L27A)	1	9	9	9	9	33	854	89	11	100
(Mitoc_mL59);(Ribosomal_L33)	1	10	10	10	10	26	657	90	10	100
(MRP-L20);(Ribosomal_L21p)	1	9	9	9	9	24	1024	89	11	100
(MRP-L20);(Ribosomal_L22)	1	9	9	9	9	24	613	89	11	100
(MRP-L28);(Ribosomal_L31)	1	9	9	9	9	22	881	89	11	100
(MRP-L28);(Ribosomal_L5)_(Ribosomal_L5_C)	1	9	9	9	9	22	2239	89	11	100
(MRP-S25);(Ribosomal_S18)	1	7	7	7	7	27	610	86	0	100
(MRP-S25);(Ribosomal_S2)	1	7	7	7	7	36	2213	86	0	100
(MRP-S25);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	7	7	36	436	86	0	100
(MRP-S25);(Ribosomal_S8)	1	7	7	7	7	36	878	86	0	100
(MRP-S25);(Sod_Fe_N)_(Sod_Fe_C)	1	7	7	7	7	25	1344	86	0	100
(Ribosomal_S2);(Sod_Fe_N)_(Sod_Fe_C)	1	7	7	7	7	25	1234	86	0	100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	1	5	10	5	10	34	666	100	100	100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	2	5	10	5	10	34	420	100	100	100
(Ribosomal_L14e);(Ribosomal_L6e)	1	5	5	5	5	21	507	100	20	100
(Ribosomal_L23);(Ribosomal_L39)	1	11	71	11	71	34	276	100	1	100
(MPP6);(Rrp40_N)_(KH_6)	1	7	7	7	7	12	1379	100	14	100
(Fibrillarin);(Nop)	1	9	13	9	13	2	1480	100	85	100
(Nop);(Ribosomal_L7Ae)	1	12	15	12	15	24	607	100	73	100
(Brix);(RRS1)	1	8	8	8	8	34	2440	100	50	100
(TFIID_NTD2)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(TFII D-31kDa)	1	5	5	5	5	65	1202	100	0	100
(TFIIA);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	23	24	23	24	3	2241	100	25	100
(LON_substr_bdg)_(Yippee-Mis18);(MMS1_N)_(CPSF_A)	1	10	16	10	16	61	2336	100	94	100
(MHC_I)_(C1-set);(V-set)	1	7	7	12	12	15	651	100	0	58
(MHC_I)_(C1-set);(V-set)	2	7	7	12	12	23	458	100	0	58
(MHC_I)_(C1-set);(V-set)	3	5	5	12	12	27	374	100	20	42
(MHC_I)_(C1-set);(V-set)	4	5	5	12	12	24	322	100	20	42
(DIM1);(Nop)_(Prp31_C)	1	10	10	10	10	25	414	100	50	100
(Nop)_(Prp31_C);(Ribosomal_L7Ae)	1	10	10	10	10	25	502	100	50	100
(PRP4)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(Rib osomal_L7Ae)	1	8	8	8	8	32	712	100	50	100
(CBF_beta);(Runt)	1	5	13	5	13	10	1085	100	100	100
(Inhibitor_I9);(Peptidase_S8)	1	13	28	14	29	10	1194	100	100	93
(ig)_(ig)_(ig);(MHC_I)_(C1-set)	1	7	8	7	9	88	923	88	50	100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)	2	7	8	7	9	88	599	12	25	100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)	3	7	8	7	9	88	375	0	0	100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)	4	7	8	7	9	88	597	0	0	100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)	5	6	7	7	9	88	268	0	0	86
(C1-set);(MHC_I_3)_(C1-set)	1	43	139	43	142	11	1243	100	99	100
(MHC_I_3)_(C1-set);(V-set)_(C1-set)	1	9	59	22	77	64	316	98	80	41
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	1	10	15	10	15	48	365	93	7	100
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	2	10	15	10	15	48	484	93	7	100
(Ig_J_chain);(V-set)_(V-set)_(V-set)_(V-set)	1	9	9	9	9	67	429	100	0	100
(DUF5089);(Synaptobrevin)	1	11	14	15	19	10	319	100	93	73
(DUF5089);(Syntaxin)_(SNARE)	1	18	21	19	23	6	1501	100	95	95
(DUF5089);(TolA_bind_tri)	1	9	12	9	13	10	1430	100	92	100
(Syntaxin)_(SNARE);(TolA_bind_tri)	1	9	12	9	13	19	354	100	83	100
(Synaphin);(Synaptobrevin)	1	6	6	6	6	52	321	100	67	100
(Synaphin);(Syntaxin)_(SNARE)	1	6	6	6	6	10	271	100	67	100
(Ca_chan_IQ);(EF-hand_7)_(EF-hand_7)	1	9	15	12	20	10	1178	100	80	75
(VEFS-Box);(WD40)_(WD40)_(WD40)_(WD40)	1	9	12	9	12	17	640	100	50	100
(EZH2_WD-Binding)_(PRC2_HTH_1)_(preSET_CXC)_(SET);(VEFS-Box)	1	7	10	7	10	17	2621	100	70	100
(G-alpha);(HRM)_(7tm_2)	1	36	36	36	36	24	1059	100	0	100
(HRM)_(7tm_2);(RAMP)	1	6	6	6	6	40	1919	100	0	100
(HRM)_(7tm_2);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	18	18	22	22	26	251	100	0	82
(Calici_coat);(CRPV_capsid)	1	29	30	29	30	7	4513	100	23	100
(Calici_coat);(Waikav_capsid_1)	1	5	6	5	6	21	1270	100	17	100
(CRPV_capsid);(Waikav_capsid_1)	1	6	7	6	7	18	1178	100	14	100
(HAV_VP);(Rhv)	1	14	15	14	15	5	1257	100	13	100
(HAV_VP);(Rhv)	2	11	11	14	15	7	3398	100	0	79
(Calici_coat)_(Calici_coat_C);(V-set)	1	5	5	20	24	56	725	100	100	25
(EF-hand_7)_(EF-hand_7);(KCNQ_channel)	1	5	7	6	8	29	1527	100	100	83
(Reovirus_L2);(Sigma_1_2)	1	6	6	6	6	21	416	100	17	100
(RbpA);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	16	21	16	21	81	1287	100	38	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)	1	20	53	20	53	35	2594	100	45	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4 )	1	5	7	5	7	82	2329	100	43	100
(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol _Rpb2_6)_(RNA_pol_Rpb2_7);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma 70_r3)_(Sigma70_r4)	1	10	25	11	26	81	2125	100	76	91
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	46	100	46	100	30	1837	100	82	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	2	39	92	46	100	30	273	100	86	85
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (RNA_pol_Rpb6)	1	28	68	37	93	10	212	100	74	76
(Cas_Cas5d);(Cas_CT1975)	1	8	9	8	9	30	2029	100	78	100
(Cas_Cmr3);(RAMPs)	1	8	8	8	8	24	1104	100	88	100
(Cas_Cmr5);(RAMPs)	1	8	8	8	8	21	521	100	88	100
(Cas_Cmr5);(RAMPs)	2	8	8	8	8	21	289	100	88	100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	1	145	199	145	199	8	2619	100	99	100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	2	21	25	145	199	56	381	12	12	14
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	3	9	10	145	199	88	338	0	0	6
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	4	7	7	145	199	54	294	14	14	5
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	5	6	11	145	199	20	298	18	9	4
(CCDC23);(Vasohibin)	1	17	23	17	23	3	1216	100	96	100
(Me-amine-dh_H);(Me-amine-dh_L)	1	15	66	15	69	12	1513	100	95	100
(Me-amine-dh_H);(Me-amine-dh_L)	2	15	66	15	69	12	1149	94	95	100
(DNA_pol_B_exo1)_(DNA_pol_B)_(zf-C4pol);(DNA_pol_D_N)_(DNA_p ol_E_B)	1	9	9	9	9	25	2078	100	67	100
(DNA_pol_B_exo1)_(DNA_pol_B)_(zf-C4pol);(PCNA_N)_(PCNA_C)	1	6	6	6	6	36	1034	100	83	100
(Sld5);(SLD5_C)	1	6	6	6	6	37	1716	100	100	100
(CDC50);(PhoLip_ATPase_N)_(E1-E2_ATPase)_(Cation_ATPase)_(Ph oLip_ATPase_C)	1	15	15	15	15	37	3850	100	7	100
(CDI);(Pkinase)	1	7	8	8	10	35	1104	100	100	88
(CKS);(Pkinase)	1	9	13	9	13	65	710	100	62	100
(F-box-like);(Skp1_POZ)_(Skp1)	1	13	15	13	15	4	1243	100	93	100
(Cyclin_N)_(Cyclin_C);(Pkinase)	1	37	150	37	167	3	1564	99	92	100
(CENP-S);(CENP-X)	1	13	16	13	16	10	2300	100	100	100
(CENP-S);(CENP-X)	2	5	5	13	16	65	221	0	0	38
(Spc24);(Spindle_Spc25)	1	6	6	6	6	10	1284	100	83	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom _S12_S23)	1	37	41	39	43	4	341	100	0	95
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L11_N)_(Ribosomal_L11)	1	10	10	15	15	22	247	100	0	67
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L12_N)_(Ribosomal_L12)	1	6	6	7	7	30	300	100	0	86
(Ribosom_S12_S23);(RRF)	1	7	9	7	9	10	434	100	0	100
(Chloroa_b-bind);(PSI_PsaF)	1	17	17	22	26	42	348	100	12	77
(Fer4_21);(PsaA_PsaB)	1	21	22	21	25	74	402	100	14	100
(Fer4_21);(PsaA_PsaB)	2	21	25	21	25	0	834	100	24	100
(Fer4_21);(PsaD)	1	21	21	21	25	21	1436	100	10	100
(Fer4_21);(PSI_PsaE)	1	21	25	21	25	53	482	100	24	100
(PsaA_PsaB);(PsaD)	1	48	51	48	55	5	789	100	27	100
(PsaA_PsaB);(PsaD)	2	48	51	48	55	5	681	100	29	100
(PsaA_PsaB);(PsaM)	1	30	33	30	33	34	954	100	33	100
(PsaA_PsaB);(PSI_8)	1	44	51	44	51	0	733	100	31	100
(PsaA_PsaB);(PSI_PsaE)	1	44	48	47	54	0	409	100	27	94
(PsaA_PsaB);(PSI_PsaE)	2	42	46	47	54	45	286	100	26	89
(PsaA_PsaB);(PSI_PsaF)	1	44	48	44	51	21	929	100	29	100
(PsaA_PsaB);(PSI_PsaF)	2	44	48	44	51	21	1061	100	31	100
(PsaA_PsaB);(PSI_PsaJ)	1	41	45	41	45	27	347	100	31	100
(PsaD);(PsaL)	1	35	38	36	43	5	464	100	32	97
(PsaL);(PSI_8)	1	30	33	32	35	0	249	100	30	94
(PsaL);(PSI_8)	2	13	16	32	35	41	252	94	50	41
(PsaM);(PSI_8)	1	22	25	24	27	0	226	100	40	92
(PSI_PsaF);(PSI_PsaJ)	1	44	48	44	51	9	707	100	29	100
(Chloroa_b-bind);(PSI_PSAK)	1	13	13	15	19	30	416	100	8	87
(Chloroa_b-bind);(PSI_PSAK)	2	8	8	15	19	23	287	100	0	53
(Fer4_7);(PsaD)	1	27	30	27	30	2	1388	100	40	100
(Fer4_7);(PSI_PsaE)	1	27	30	27	30	40	534	100	33	100
(PsaD);(PSI_PsaH)	1	10	10	11	15	36	547	100	10	91
(PsaL);(PSI_PsaH)	1	13	13	13	17	22	1653	100	8	100
(PSI_8);(PSI_PsaH)	1	13	13	13	17	7	318	100	8	100
(Chloroa_b-bind);(Photo_RC)	1	7	7	7	7	55	249	100	14	100
(Chloroa_b-bind);(PsbH)	1	7	7	7	7	55	520	100	14	100
(Chloroa_b-bind);(PSII)	1	7	7	8	8	55	862	100	14	88
(Chloroa_b-bind);(PSII)	2	5	5	8	8	52	238	100	0	62
(Chloroa_b-bind);(Ycf9)	1	8	8	8	8	52	300	100	0	100
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)	1	30	53	30	73	7	733	100	43	100
(Cytochrom_B559);(Photo_RC)	1	30	48	30	73	0	463	100	42	100
(Cytochrom_B559);(PsbJ)	1	25	48	25	68	7	377	100	35	100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	1	29	48	29	72	62	1316	100	40	100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	2	28	49	29	72	62	306	100	45	97
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)	1	24	48	24	67	0	372	100	33	100
(MSP);(Photo_RC)	1	26	42	26	69	35	701	100	29	100
(MSP);(Photo_RC)	2	25	44	26	69	36	666	100	34	96
(MSP);(PsbQ)	1	7	7	7	7	11	274	100	0	100
(MSP);(PsbW)	1	8	8	8	8	38	495	100	12	100
(MSP);(PSII)	1	26	42	26	69	35	1301	100	31	100
(MSP);(PSII)	2	23	42	26	69	36	783	100	31	88
(MSP);(PSII)	3	23	41	26	69	39	398	83	7	88
(Photo_RC);(PsbH)	1	28	47	28	71	55	269	100	36	100
(Photo_RC);(PsbI)	1	28	49	28	71	12	862	100	27	100
(Photo_RC);(PsbL)	1	28	47	28	71	68	403	100	30	100
(Photo_RC);(PsbL)	2	25	46	28	71	76	256	100	41	89
(Photo_RC);(PsbT)	1	28	49	28	71	40	511	100	39	100
(Photo_RC);(PsbT)	2	24	42	28	71	40	219	100	31	86
(Photo_RC);(PsbW)	1	11	11	11	11	26	476	100	9	100
(Photo_RC);(PsbX)	1	27	45	27	70	3	588	100	38	100
(Photo_RC);(PSII)	1	30	49	30	73	9	2884	100	49	100
(Photo_RC);(PSII)	2	29	53	30	73	16	793	100	53	97
(PsbH);(PsbX)	1	26	54	26	69	3	300	100	33	100
(PsbH);(PSII)	1	28	57	28	71	55	1881	100	40	100
(PsbI);(PsbW)	1	11	11	11	11	9	796	100	0	100
(PsbI);(PSII)	1	28	44	28	71	64	426	100	30	100
(PsbK);(PSII)	1	29	47	29	72	17	795	100	34	100
(PsbK);(PSII_Ycf12)	1	19	37	19	62	4	495	100	30	100
(PsbK);(Ycf9)	1	26	46	26	69	6	266	100	26	100
(PsbL);(PsbM)	1	27	57	27	70	4	811	100	40	100
(PsbL);(PsbT)	1	28	58	28	71	12	591	100	41	100
(PsbL);(PSII)	1	28	52	28	71	12	603	100	38	100
(PsbM);(PsbT)	1	17	37	21	64	4	243	100	11	81
(PsbQ);(PSII)	1	8	8	8	8	11	1402	100	0	100
(PsbW);(PSII)	1	11	11	11	11	26	790	100	9	100
(PSII);(Ycf9)	1	27	44	27	70	6	424	100	25	100
(PSII_Ycf12);(Ycf9)	1	19	37	19	62	0	394	100	27	100
(Cytochrom_C550);(Photo_RC)	1	19	36	19	62	54	567	100	56	100
(Cytochrom_C550);(Photo_RC)	2	10	25	19	62	55	211	100	48	53
(Cytochrom_C550);(PsbU)	1	18	37	18	61	31	640	100	41	100
(Cytochrom_C550);(PSII)	1	20	36	20	63	35	921	100	53	100
(MSP);(PsbU)	1	18	36	18	61	31	518	100	31	100
(PsbU);(PSII)	1	18	33	18	61	31	428	100	33	100
(PsbU);(PSII)	2	18	35	18	61	31	472	100	40	100
(Ion_trans)_(Ion_trans)_(Ion_trans)_(Ion_trans)_(GPHH)_(Ca_c han_IQ);(VWA_N)_(VWA_3)_(VGCC_alpha2)	1	12	12	12	12	70	1822	100	25	100
(Ion_trans)_(Ion_trans)_(Ion_trans)_(Ion_trans)_(GPHH)_(Ca_c han_IQ);(VGCC_beta4Aa_N)_(Guanylate_kin)	1	5	5	5	5	82	1073	100	20	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_ Rpb2_6)_(RNA_pol_Rpb2_7)	1	34	60	35	62	50	7920	100	67	97
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_ (RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	61	78	68	85	26	235	100	8	90
(Como_LCP);(Como_SCP)	1	9	11	9	12	37	1792	100	55	100
(CoV_NSP7);(CoV_NSP8)	1	22	24	28	32	11	1301	100	42	79
(CoV_NSP7);(CoV_RPol_N)_(RdRP_1)	1	20	20	21	21	11	776	100	25	95
(CoV_NSP8);(CoV_RPol_N)_(RdRP_1)	1	21	21	22	22	13	2441	100	24	95
(CoV_peptidase);(ubiquitin)	1	13	16	13	16	10	1006	100	94	100
(QCR10);(UCR_14kD)	1	5	5	5	5	70	333	100	60	100
(QCR10);(UCR_UQCRX_QCR9)	1	5	5	5	5	81	624	100	60	100
(COX1);(COX2_TM)_(COX2)_(COX_ARM)	1	5	5	5	5	31	3284	100	80	100
(COX2-transmemb)_(COX2);(CoxIIa)	1	6	30	6	36	17	852	90	100	100
(Cpn10);(Cpn60_TCP1)	1	14	20	15	21	11	414	100	80	93
(Prefoldin);(Prefoldin_2)	1	7	7	7	7	18	814	100	29	100
(Prefoldin);(Prefoldin_2)	2	7	7	7	7	19	758	100	29	100
(HRM)_(7tm_2);(ZapB)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)	1	8	8	13	13	28	318	100	0	62
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)	1	28	53	37	62	84	929	100	40	76
(Rhv);(VP4_2)	1	19	25	24	36	13	561	100	60	79
(Rhv);(VP4_2)	2	19	22	24	36	22	242	100	45	79
(Rhv);(VP4_2)	3	10	12	24	36	16	677	92	42	42
(CsgF);(CsgG)	1	5	5	6	6	10	228	100	0	83
(CsgF);(CsgG)	2	5	5	6	6	10	1023	100	0	83
(CsgF);(CsgG)	3	5	5	6	6	10	377	100	0	83
(Csm4_C);(RAMPs)	1	10	10	10	10	21	1537	100	0	100
(JAB)_(CSN5_C);(PCI)_(CSN4_RPN5_eIF3a)	1	5	6	5	6	67	509	100	50	100
(PCI);(RPN7)_(PCI)	1	5	6	5	6	3	2024	100	50	100
(PCI)_(CSN4_RPN5_eIF3a);(PCI)_(CSN7a_helixI)	1	5	6	5	6	60	941	100	50	100
(DSS1_SEM1);(PCI)	1	6	6	6	6	21	2173	100	100	100
(SH2)_(SOCS_box);(Skp1_POZ)	1	7	8	7	8	31	916	100	100	100
(Cullin_binding);(Cullin_Nedd8)	1	5	5	5	5	27	553	60	0	100
(Ribosomal_S10);(Ribosomal_S3_C)	1	6	6	6	6	76	551	100	67	100
(CybS);(Fer2_3)_(Fer4_17)	1	7	50	9	60	8	677	100	96	78
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_17)	1	9	58	9	60	48	2535	100	97	100
(Fer2_3)_(Fer4_17);(Sdh_cyt)	1	5	24	9	60	19	1445	100	92	56
(Cyclin_N)_(Cyclin_C_2);(Pkinase)	1	7	8	7	8	27	1296	100	62	100
(DEAD_2)_(HBB)_(Helicase_C_2);(zf-C3HC4_5)_(MAT1)	1	7	7	7	7	30	782	100	14	100
(Helicase_C_3)_(ResIII)_(ERCC3_RAD25_C);(Tfb5)	1	13	13	13	13	26	492	100	15	100
(Med11);(Med17)	1	10	10	12	12	8	1175	100	30	83
(Med11);(Med18)	1	6	6	6	6	11	369	100	33	100
(Med11);(Med22)	1	11	11	11	11	5	1557	100	36	100
(Med11);(Med8)	1	5	5	5	5	21	893	100	40	100
(Med17);(Med22)	1	11	11	12	12	8	1140	100	27	92
(Med17);(Med8)	1	8	8	9	9	6	1250	100	25	89
(Med18);(Med20)	1	13	13	13	13	5	1394	100	38	100
(Med18);(Med8)	1	9	9	9	9	11	607	100	22	100
(Med21);(Med7)	1	7	8	7	8	22	1690	100	38	100
(Med31);(Med7)	1	7	8	7	8	25	969	100	38	100
(Tfb2)_(Tfb2_C);(Tfb4)	1	8	8	13	13	24	1055	100	25	62
(Tfb2)_(Tfb2_C);(Tfb5)	1	14	14	14	14	24	995	100	14	100
(Med26)_(TFIIS_M)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2 )_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_po l_Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	8	8	8	8	29	2397	100	12	100
(Cys_knot);(Hormone_6)	1	5	7	5	7	9	2136	100	100	100
(Cystatin);(Peptidase_C1)	1	6	7	6	7	11	894	100	100	100
(CytoC_RC);(Photo_RC)	1	14	32	14	44	21	1655	100	91	100
(CytoC_RC);(Photo_RC)	2	14	32	14	44	21	2502	100	94	100
(LHC);(Photo_RC)	1	9	12	9	12	22	517	100	67	100
(LHC);(Photo_RC)	2	9	12	9	12	22	629	100	67	100
(LHC);(Photo_RC)	3	9	12	9	12	5	355	100	67	100
(LHC);(Photo_RC)	4	9	12	9	12	22	301	100	67	100
(LHC);(Photo_RC)	5	8	11	9	12	25	270	100	73	89
(LHC);(PRCH)_(PRC)	1	6	9	8	11	28	309	100	89	75
(LHC);(PRCH)_(PRC)	2	5	6	8	11	39	279	100	67	62
(Photo_RC);(PRCH)_(PRC)	1	21	130	21	145	35	1609	100	95	100
(Photo_RC);(PRCH)_(PRC)	2	21	130	21	145	35	2675	100	97	100
(Cytochrom_B562)_(7tm_1);(G-alpha)	1	6	6	6	6	38	1113	100	0	100
(Cytochrom_C);(peroxidase)	1	7	19	8	26	37	558	100	32	88
(OST3_OST6);(STT3)	1	7	7	7	7	8	2013	100	43	100
(Ost4);(STT3)	1	7	7	7	7	35	1553	100	43	100
(DDA1);(MMS1_N)_(CPSF_A)	1	5	5	6	8	60	2363	100	80	83
(DCP1);(DCP2)_(NUDIX)	1	9	10	9	10	19	1074	100	70	100
(DCP1);(PNRC)	1	6	7	7	8	19	788	100	100	86
(DDDD);(MCU)	1	9	9	9	9	12	624	100	0	100
(DDDD);(MCU)	2	8	8	9	9	87	799	100	0	89
(LSM);(U1snRNP70_N)_(RRM_1)	1	7	7	7	7	22	303	100	14	100
(LSM);(zf-U1)	1	7	7	7	7	38	664	100	14	100
(ECR1_N)_(EXOSC1);(RNase_PH)	1	14	14	14	14	18	1019	100	64	100
(ECR1_N)_(EXOSC1);(RNase_PH)_(RNase_PH_C)	1	11	13	11	13	14	762	100	85	100
(ECR1_N)_(EXOSC1);(Rrp40_N)_(KH_6)	1	13	13	13	13	28	444	100	69	100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	12	12	12	12	23	1423	100	67	100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	2	12	12	12	12	34	1180	100	67	100
(TBP)_(TBP);(TFIIA)	1	11	12	11	12	50	343	100	25	100
(Dehydratase_LU);(Dehydratase_SU)	1	5	13	5	13	54	2717	100	77	100
(DHR-2);(Ras)	1	7	10	8	11	18	2041	100	100	88
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Gar1)	1	7	7	7	7	24	837	100	86	100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Nop10p)	1	12	17	12	17	10	1351	100	100	100
(DNA_primase_lrg);(DNA_primase_S)	1	5	7	5	7	7	845	71	57	100
(DNA_RNApol_7kD);(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)	1	14	17	14	17	25	582	100	53	100
(RNA_pol_3_Rpc31);(RNA_pol_Rpc34)	1	14	14	24	24	66	539	100	57	58
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_L_2)	1	15	18	15	18	23	1799	100	56	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_N)	1	14	17	14	17	28	998	100	53	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb2_1)_(RN A_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb 2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	10	10	10	10	30	1755	100	60	100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	65	72	65	72	22	925	100	76	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_R pb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	10	10	10	10	38	8318	100	60	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_Rpb5_C)	1	60	64	60	64	28	2411	100	67	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	60	64	60	64	28	1671	100	67	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	25	25	25	25	44	1235	100	60	100
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	27	27	27	27	30	1723	100	63	100
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	25	25	25	25	44	426	100	60	100
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7)	1	23	26	23	26	23	957	100	62	100
(HTH_9)_(RNA_pol_Rpc82)_(TFIIE_alpha);(RNA_pol_3_Rpc31)	1	16	16	16	16	66	1616	100	62	100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	15	15	16	16	28	769	100	67	94
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)	1	17	20	23	26	26	249	100	50	74
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_(RNA_p ol_Rpb2_7)	1	23	26	23	26	37	1573	100	62	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_R pb2_6)_(RNA_pol_Rpb2_7)	1	19	22	20	23	36	8705	100	68	95
(Myb_DNA-bind_7);(TBP)_(TBP)	1	6	6	6	6	29	620	100	83	100
(RNA_pol_I_A49);(RNA_polI_A34)	1	31	35	31	35	38	2028	100	83	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb1_5)	1	5	8	5	8	45	4533	100	88	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_C)	1	5	8	5	8	41	683	100	88	100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7)	1	7	10	7	10	48	938	100	60	100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_C)	1	8	11	8	11	41	1088	100	64	100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	8	11	8	11	45	957	91	64	100
(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	8	11	8	11	45	499	100	55	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);( SHS2_Rpb7-N)_(S1)	1	6	9	6	9	48	266	100	44	100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	1	11	39	11	39	42	1390	100	72	100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	2	10	38	11	39	42	609	100	71	91
(DnaJ)_(Sec63);(Plug_translocon)_(SecY)	1	18	18	18	18	28	1244	100	0	100
(DnaJ)_(Sec63);(Sec61_beta)	1	17	17	17	17	28	320	100	0	100
(DnaJ)_(Sec63);(Sec66)	1	18	18	18	18	26	876	100	0	100
(DnaJ)_(Sec63);(SecE)	1	16	16	17	17	28	465	100	0	94
(Plug_translocon)_(SecY);(Sec61_beta)	1	36	38	36	38	0	990	95	32	100
(Plug_translocon)_(SecY);(Sec66)	1	5	5	17	17	26	355	100	0	29
(Plug_translocon)_(SecY);(SecE)	1	42	44	42	44	3	1648	95	32	100
(Sec61_beta);(Sec66)	1	5	5	17	17	26	407	100	0	29
(NMD3);(Ribosomal_L44)	1	14	14	15	15	44	568	100	29	93
(Ribosomal_L22);(zf-C2H2_2)	1	8	8	8	8	33	475	100	100	100
(Ribosomal_L39);(zf-C2H2_2)	1	8	8	8	8	33	362	100	100	100
(Ribosomal_L4)_(Ribos_L4_asso_C);(zf-C2H2_2)	1	6	6	6	6	34	246	100	100	100
(DUF1077);(EMC1_C)	1	5	5	6	6	21	1396	100	40	83
(DUF1077);(EMC3_TMCO1)	1	5	5	6	6	23	484	100	40	83
(EMC1_C);(EMC3_TMCO1)	1	6	6	7	7	21	1650	100	33	86
(EMC1_C);(TPR_19)	1	5	5	6	6	13	396	100	40	83
(EMC3_TMCO1);(EMC6)	1	6	6	7	7	23	976	100	33	86
(EMC3_TMCO1);(TPR_19)	1	6	6	6	6	13	1404	100	33	100
(TPR_19);(UPF0172)	1	5	5	5	5	45	1069	100	60	100
(Ribosomal_L23eN)_(Ribosomal_L23);(SecE)	1	6	6	8	8	63	232	100	17	75
(Gtr1_RagA);(LAMTOR)	1	5	5	7	7	10	714	100	40	71
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	1	12	45	12	48	12	4564	100	98	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	2	12	45	12	48	51	1317	100	98	100
(Fer4_NifH);(Oxidored_nitro)	1	6	8	7	10	10	428	100	75	86
(Fer4_NifH);(Oxidored_nitro)	2	5	8	7	10	10	517	100	88	71
(Ribosomal_S24e);(RS4NT)_(Ribosomal_S4e)_(KOW)_(40S_S4_C)	1	5	5	5	5	53	584	100	0	100
(Ribosomal_S6e);(RS4NT)_(Ribosomal_S4e)_(KOW)_(40S_S4_C)	1	5	5	5	5	54	373	100	0	100
(RS4NT)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)	1	5	5	5	5	57	357	100	0	100
(DUF3585);(Ras)	1	6	7	6	7	27	862	100	86	100
(DUF5601)_(VPS9);(Ras)	1	5	7	5	7	24	1042	100	100	100
(E3_binding);(Pyr_redox_2)_(Pyr_redox_dim)	1	6	6	6	6	22	454	100	17	100
(EccE);(YukD)_(EccD)	1	5	5	5	5	13	611	100	60	100
(Ecotin);(Trypsin)	1	13	18	13	18	26	939	100	100	100
(Ecotin);(Trypsin)	2	11	16	13	18	26	505	94	100	85
(Gla)_(EGF)_(FXa_inhibition);(Trypsin)	1	8	76	8	76	38	904	95	97	100
(EF-hand_1)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(Myosin_tai l_1)	1	7	7	7	7	39	2109	100	29	100
(EF-hand_7)_(EF-hand_7);(Metallophos)	1	9	13	9	13	54	2159	100	100	100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	4	801	41	5	100
(Ribosomal_60s);(Ribosomal_L10)_(RL10P_insert)_(Ribosomal_60 s)	1	5	5	5	5	10	786	80	20	100
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	571	41	5	100
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	1	12	25	21	34	77	260	32	0	57
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	533	41	5	100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	10	418	41	5	100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	252	41	5	100
(S10_plectin);(Stm1_N)_(HABP4_PAI-RBP1)	1	5	7	8	10	82	205	57	14	62
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)	1	9	9	9	9	56	529	33	0	100
(Ribosomal_L7Ae);(Stm1_N)	1	6	6	8	8	87	276	50	0	75
(Ribosomal_S13);(Stm1_N)	1	9	9	9	9	56	482	33	0	100
(Ribosomal_S19);(Stm1_N)	1	9	9	9	9	56	422	33	0	100
(EGF)_(FXa_inhibition);(Trypsin)	1	11	32	11	32	10	878	100	100	100
(eIF_4EBP);(IF4E)	1	10	13	13	20	0	1056	100	100	77
(HVO_2753_ZBP);(Ribosomal_S2)	1	7	7	7	7	84	786	100	29	100
(HVO_2753_ZBP);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	7	7	84	727	100	29	100
(IBN_N)_(Xpo1)_(CRM1_repeat)_(CRM1_repeat_2)_(CRM1_repeat_3) _(CRM1_C);(Ras)	1	16	62	16	72	45	2007	100	68	100
(Ran_BP1);(Ras)	1	14	61	14	67	22	2087	100	93	100
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)_(W2)	1	23	24	23	24	28	1212	100	33	100
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)_(W2)	2	13	13	23	24	28	239	100	31	57
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)_(W2)	3	9	9	23	24	28	298	100	44	39
(IF-2B);(S1)_(LZ3wCH)_(EIF_2_alpha)	1	9	10	9	10	47	874	100	60	100
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)	1	15	16	15	16	32	676	100	25	100
(NTP_transferase)_(Hexapep)_(Hexapep);(NTP_transferase)_(Hex apep)_(Hexapep)_(W2)	1	15	16	15	16	32	906	100	25	100
(Ribosomal_L21e);(Ribosomal_L5e)	1	13	73	13	73	21	526	100	1	100
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)	1	11	71	11	71	38	225	100	1	100
(Ribosomal_L28e);(Ribosomal_L6e)	1	6	6	6	6	21	444	100	17	100
(Enterotoxin_a);(Enterotoxin_b)	1	6	15	6	15	60	399	100	67	100
(Ephrin);(Ephrin_lbd)	1	10	10	10	10	25	1100	100	100	100
(Ephrin);(HN)	1	5	5	8	8	26	1335	100	100	62
(Herpes_glycop_H)_(Herpes_glycoH_C);(Phage_glycop_gL)	1	7	7	7	7	11	2312	100	86	100
(eRF1_1)_(eRF1_2)_(eRF1_3);(HBS1_N)_(GTP_EFTU)_(GTP_EFTU_D2) _(GTP_EFTU_D3)	1	7	7	7	7	30	1763	100	0	100
(HBS1_N)_(GTP_EFTU)_(GTP_EFTU_D2)_(GTP_EFTU_D3);(Ribosom_S12 _S23)	1	5	5	5	5	33	322	100	0	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	62	62	62	62	4	464	98	0	100
(PE);(PPE)	1	6	8	6	8	26	2048	100	100	100
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_8)	1	8	19	8	19	25	2661	100	89	100
(PsaA_PsaB);(PsaX)	1	12	15	12	15	61	400	100	53	100
(FeThRed_A);(FeThRed_B)	1	8	9	8	9	41	799	89	56	100
(FeThRed_B);(Thioredoxin)	1	6	6	6	6	26	771	100	100	100
(PPTA)_(PPTA)_(PPTA)_(PPTA)_(PPTA);(Prenyltrans)_(Prenyltran s)_(Prenyltrans)_(Prenyltrans)_(Prenyltrans)	1	5	75	5	75	19	3038	93	100	100
(FGF);(I-set)_(I-set)	1	12	15	12	15	17	1383	100	100	100
(FG-GAP)_(FG-GAP)_(FG-GAP)_(Integrin_alpha2);(PSI_integrin)_ (Integrin_beta)_(I-EGF_1)	1	6	7	6	7	44	1764	100	86	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	1	15	30	15	32	27	1734	100	87	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	2	13	24	15	32	27	905	100	96	87
(Filo_glycop);(TLV_coat)	1	24	38	24	38	12	2479	97	82	100
(Filo_glycop);(TLV_coat)	2	24	38	24	38	12	415	84	79	100
(Filo_glycop);(TLV_coat)	3	24	38	24	38	13	454	84	79	100
(Fimbrial);(PapD_N)_(PapD_C)	1	15	17	15	17	5	1653	100	88	100
(PapC_N)_(Usher)_(PapC_C);(PapD_N)_(PapD_C)	1	5	5	5	5	26	1039	100	60	100
(FKBP_C);(FRB_dom)	1	8	12	8	12	40	365	100	25	100
(Flavi_glycoprot)_(Flavi_glycop_C);(V-set)	1	5	5	27	28	51	449	100	0	19
(Flavi_glycop_C);(V-set)_(C1-set)	1	5	5	16	17	22	431	100	0	31
(Flavi_glycop_C);(V-set)_(V-set)	1	6	6	6	6	46	914	100	0	100
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	1	39	39	40	40	8	1107	100	3	98
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	2	25	25	40	40	14	917	100	0	62
(Flavi_glycoprot)_(Flavi_glycop_C);(V-set)_(C1-set)	1	5	5	27	29	33	469	100	20	19
(Flavi_NS2B);(Peptidase_S7)_(Flavi_DEAD)	1	5	7	6	9	68	1429	100	14	83
(Flu_PA);(Flu_PB1)	1	47	56	47	57	3	7848	100	64	100
(Flu_PA);(Flu_PB2)	1	38	47	40	50	21	1820	100	70	95
(Flu_PB1);(Flu_PB2)	1	40	51	40	51	10	5907	100	69	100
(fn3);(HH_signal)	1	5	6	5	6	74	667	100	17	100
(RGM_N);(TGF_beta)	1	8	8	8	9	37	553	88	88	100
(RGM_N);(TGF_beta)	2	8	8	8	9	37	415	88	88	100
(MAPKK1_Int);(Robl_LC7)	1	14	18	14	18	13	1267	100	72	100
(F-protein);(SH3_1)	1	7	9	7	9	13	656	100	100	100
(Furin-like_2);(ZNRF_3_ecto)	1	9	9	9	9	9	1004	100	89	100
(FXa_inhibition);(Trypsin)	1	19	154	19	159	35	899	96	99	100
(Serpin);(Trypsin)	1	11	12	12	13	23	1134	100	92	92
(UQ_con);(zf-RING_2)	1	11	11	12	12	27	564	100	18	92
(MHC_II_alpha)_(C1-set);(Stap_Strp_toxin)_(Stap_Strp_tox_C)	1	9	18	12	21	31	680	100	0	75
(Hormone_2);(HRM)_(7tm_2)	1	17	17	17	17	4	1539	100	6	100
(G-alpha);(Phage_lysozyme)_(7tm_1)	1	6	6	6	6	41	1139	100	0	100
(Ras);(RhoGEF)_(PH)	1	7	8	7	8	19	1492	100	100	100
(G-alpha);(RGS)	1	9	9	9	9	33	893	100	11	100
(Gamma-thionin);(GP120)	1	11	18	11	18	70	693	100	39	100
(GDNF)_(GDNF);(TGF_beta)	1	6	6	7	7	22	736	100	83	86
(GDNF)_(GDNF)_(GDNF);(TGF_beta)	1	5	5	7	7	44	832	100	40	71
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_ Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	7	36	7	36	77	2326	100	97	100
(GP120);(V-set_2)_(C1-set)	1	44	62	96	128	12	974	100	53	46
(GP120);(V-set_2)_(C1-set)	2	14	20	96	128	72	307	90	45	15
(GP120);(V-set_2)_(C1-set)	3	12	24	96	128	12	249	0	4	12
(GP120);(V-set_2)_(C1-set)	4	5	5	96	128	55	751	100	40	5
(GP120);(V-set_2)_(C1-set)	5	5	5	96	128	68	558	100	20	5
(GP120);(V-set_2)_(C1-set)	6	5	5	96	128	31	539	100	20	5
(V-set)_(C1-set);(V-set_2)_(C1-set)_(C1-set)_(C1-set)	1	5	5	5	5	25	1619	100	80	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb 2_6)_(RNA_pol_Rpb2_7)	1	11	27	11	27	32	1870	100	70	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb 2_6)_(RNA_pol_Rpb2_7)	2	6	22	11	27	37	246	100	86	55
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L10)_(RL10P_insert)	1	11	11	11	11	56	568	100	0	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L6)_(Ribosomal_L6)	1	8	8	17	17	38	243	100	0	47
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L6)_(Ribosomal_L6)	2	7	7	17	17	46	232	100	0	41
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_S30)	1	10	10	16	16	58	271	100	0	62
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L10)_(RL10P_insert)_(Ribosomal_60s)	1	7	7	7	7	52	550	100	0	100
(Rhv);(V-set)_(C1-set)	1	5	5	12	12	8	678	100	0	42
(IgG_binding_B);(V-set)_(C1-set)	1	8	8	8	8	50	528	100	12	100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)_(C1-set)	1	8	10	12	14	19	694	100	40	67
(Herpes_capsid);(Herpes_MCP)	1	11	11	11	11	26	1813	100	0	100
(Herpes_capsid);(Herpes_MCP)	2	11	11	11	11	26	587	100	0	100
(Herpes_UL17);(Herpes_UL25)	1	5	5	11	11	82	1431	100	0	45
(Herpes_UL17);(Herpes_UL25)	2	5	5	11	11	82	2351	100	0	45
(Herpes_MCP);(Herpes_UL35)	1	10	10	10	10	25	1587	100	0	100
(Herpes_MCP);(Herpes_UL35)	2	9	9	10	10	25	1376	100	0	90
(Hirudin);(Trypsin)	1	5	9	11	254	87	1286	100	89	45
(MMS1_N)_(CPSF_A);(WD40)_(WD40)_(WD40)	1	8	11	8	11	49	2448	100	100	100
(Histone);(PHD)_(PHD)	1	6	11	8	15	10	937	100	82	75
(HLH)_(PAS)_(PAS_11);(HLH)_(PAS)_(PAS_3)	1	5	5	5	5	26	3866	100	100	100
(RAG1_imp_bd)_(zf-C3HC4)_(zf-RAG1)_(RAG1);(RAG2)_(RAG2_PHD)	1	14	14	14	14	52	1918	100	0	100
(RAG1_imp_bd)_(zf-C3HC4)_(zf-RAG1)_(RAG1);(RAG2)_(RAG2_PHD)	2	5	5	14	14	52	589	100	0	36
(Hormone_recep);(SRC-1)	1	12	22	57	401	10	666	100	95	21
(IGFBP);(Insulin)	1	5	5	5	5	58	820	100	100	100
(IL10);(Tissue_fac)_(Interfer-bind)	1	5	8	5	8	14	757	100	12	100
(IL2RB_N1)_(fn3);(IL6Ra-bind)_(fn3)	1	6	6	6	6	59	893	100	50	100
(Inhibitor_I42);(Peptidase_C1)	1	5	5	6	6	26	1071	100	100	83
(NusB);(Ribosomal_S10)	1	9	10	9	10	23	804	100	30	100
(NusG)_(KOW);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1 _3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	34	34	34	34	4	662	100	6	100
(Ion_trans)_(Na_trans_cytopl)_(Ion_trans)_(Na_trans_assoc)_( Ion_trans)_(Ion_trans)_(GPHH);(V-set)	1	5	5	5	5	79	267	100	0	100
(Rad60-SLD);(UQ_con)	1	7	7	11	13	14	565	71	14	64
(RanGAP1_C);(UQ_con)	1	5	11	5	11	81	569	100	9	100
(JAB);(JAB)_(MitMem_reg)	1	6	7	6	8	89	1987	100	100	100
(JAB);(ubiquitin)	1	7	11	7	11	10	1198	82	82	100
(Kazal_1);(Trypsin)	1	11	36	11	36	3	645	100	97	100
(KOW)_(Ribosomal_L14e);(KOW)_(Ribosomal_L6e)	1	10	10	10	10	21	536	100	10	100
(KOW)_(Ribosomal_L6e);(Ribosomal_L35Ae)	1	10	10	10	10	21	876	100	10	100
(Kunitz_legume);(Trypsin)	1	9	11	10	12	28	999	100	73	90
(Lipoprotein_18);(YfiO)	1	12	14	12	14	84	2225	100	86	100
(Lys);(V-set)_(C1-set)	1	7	16	15	27	84	386	100	12	47
(Lys);(V-set)_(C1-set)	2	7	16	15	27	84	521	100	12	47
(Lys);(tRNA_anti-codon)	1	5	5	5	5	86	864	100	0	100
(Lys);(V-set)	1	6	10	25	60	18	743	100	70	24
(Lys);(V-set)	2	5	23	25	60	77	382	100	22	20
(Lys);(V-set)	3	5	23	25	60	75	526	100	22	20
(MCR_alpha_N)_(MCR_alpha);(MCR_gamma)	1	7	8	9	23	47	2537	100	100	78
(MCR_alpha_N)_(MCR_alpha);(MCR_gamma)	2	6	7	9	23	47	572	100	100	67
(MCR_beta_N)_(MCR_beta);(MCR_gamma)	1	9	23	9	23	17	2595	100	100	100
(MeMO_Hyd_G);(Phenol_Hydrox)	1	7	39	7	39	13	1383	100	100	100
(MeMO_Hyd_G);(Phenol_Hydrox)_(YHS)	1	5	30	5	30	10	2144	100	100	100
(MHC_II_alpha)_(C1-set);(MHC2-interact)	1	5	5	10	11	15	673	100	100	50
(MHC_II_beta)_(C1-set);(MHC2-interact)	1	5	5	10	11	15	683	100	100	50
(Phenol_Hydrox)_(YHS);(TmoB)	1	6	37	6	37	52	1322	100	100	100
(MoaE);(ThiS)	1	7	9	8	10	19	919	100	78	88
(MotA_ExbB);(MotB_plug)_(OmpA)	1	5	5	5	5	24	541	100	60	100
(TBP)_(TBP);(TFIIB)_(TFIIB)	1	6	8	6	8	15	1190	100	88	100
(Neur_chan_LBD);(Toxin_8)	1	5	8	7	10	34	445	100	88	71
(Neur_chan_LBD);(Toxin_8)	2	5	8	7	10	34	438	100	88	71
(NHase_alpha);(NHase_beta)	1	9	55	9	56	7	3153	100	98	100
(NHase_alpha);(NHase_beta)	2	5	31	9	56	29	296	13	58	56
(Nucleoporin_C);(Nup84_Nup100)	1	5	5	5	5	5	796	100	60	100
(OTCace_N)_(OTCace);(PyrI)_(PyrI_C)	1	6	63	7	65	45	674	100	98	86
(Pacifastin_I);(Trypsin)	1	7	7	7	7	10	902	100	100	100
(PBD);(Ras)	1	6	7	6	8	16	1127	100	71	100
(Peptidase_C12);(ubiquitin)	1	7	9	7	9	19	1114	100	89	100
(Peptidase_C48);(Rad60-SLD)	1	11	15	11	15	14	1028	100	87	100
(Peptidase_C65);(ubiquitin)	1	10	11	10	11	10	1039	100	91	100
(Peptidase_M10);(TIMP)	1	9	11	9	11	39	1081	100	91	100
(Peptidase_S8);(potato_inhibit)	1	11	29	11	29	32	835	100	100	100
(PhdYeFM_antitox);(YoeB_toxin)	1	5	5	6	6	35	1617	100	100	83
(Pico_P1A)_(Rhv);(Rhv)	1	14	19	14	19	10	1732	95	11	100
(Pico_P1A)_(Rhv);(Rhv)	2	12	15	14	19	10	2065	93	7	86
(Plexin_cytopl);(Ras)	1	5	5	6	6	40	676	100	100	83
(potato_inhibit);(Trypsin)	1	5	7	5	7	33	874	100	100	100
(PRELI);(UPF0203)	1	7	8	7	8	31	1324	100	75	100
(Ras);(RasGEF_N)_(RasGEF)	1	6	50	8	57	16	1634	100	56	75
(Ras);(Rho_GDI)	1	6	6	7	7	53	1456	100	100	86
(Ras);(zf-RanBP)	1	5	5	5	5	38	520	100	20	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	11	13	11	13	84	8022	100	62	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(zf-dskA_traR)	1	14	14	14	14	21	1680	100	14	100
(RnaseA);(V-set)	1	8	12	8	12	89	581	100	75	100
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)	1	34	261	35	326	13	2640	100	95	97
(Sec1);(Vps16_C)	1	5	5	5	5	28	2079	100	80	100
(Sec1);(Syntaxin)_(SNARE)	1	5	7	5	7	5	2175	100	100	100
(SipA_VBS);(Vinculin)	1	6	6	6	6	10	1157	100	100	100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)	1	5	9	5	9	43	626	100	44	100
(T2SSI);(T2SSJ)	1	6	6	6	6	24	738	100	100	100
(T6SS_VipA);(VipB)_(VipB_2)	1	8	8	8	8	15	2803	100	50	100
(T6SS_VipA);(VipB)_(VipB_2)	2	5	5	8	8	26	718	100	60	62
(ThiF)_(E1_FCCH)_(E1_4HB)_(ThiF)_(ThiF)_(UBA_e1_thiolCys)_(T hiF)_(E1_UFD);(ubiquitin)	1	11	14	11	14	10	1605	100	100	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	1	8	10	8	11	19	611	100	80	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	2	8	10	8	11	19	491	100	80	100
(ubiquitin);(zf-C3HC4_3)	1	8	8	8	9	26	385	100	50	100
(UQ_con);(zf-C3HC4_3)	1	10	10	10	11	26	512	100	40	100
(ubiquitin);(zf-RanBP)	1	5	8	5	8	34	376	88	38	100
(UCH);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(DUF3337)	1	6	7	6	7	83	713	100	0	100
(C1-set);(MHC_I)_(C1-set)	1	500	1043	501	1055	8	1247	100	93	100
(C1-set);(MHC_I)_(C1-set)	2	39	94	501	1055	18	262	0	3	8
(C1-set);(MHC_I)_(C1-set)	3	31	45	501	1055	23	269	0	9	6
(C1-set);(MHC_I)_(C1-set)	4	26	56	501	1055	83	262	0	0	5
(C1-set);(MHC_I)_(C1-set)	5	24	57	501	1055	19	336	0	7	5
(C1-set);(MHC_I)_(C1-set)	6	23	56	501	1055	72	334	0	0	5
(C1-set);(MHC_I)_(C1-set)	7	19	27	501	1055	85	340	0	0	4
(C1-set);(MHC_I)_(C1-set)	8	18	52	501	1055	68	225	0	0	4
(C1-set);(MHC_I)_(C1-set)	10	17	22	501	1055	24	256	0	5	3
(C1-set);(MHC_I)_(C1-set)	11	13	19	501	1055	65	240	0	0	3
(C1-set);(MHC_I)_(C1-set)	12	13	20	501	1055	68	367	0	0	3
(C1-set);(MHC_I)_(C1-set)	13	12	169	501	1055	84	207	1	0	2
(C1-set);(MHC_I)_(C1-set)	14	12	22	501	1055	17	299	0	0	2
(C1-set);(MHC_I)_(C1-set)	15	12	15	501	1055	65	326	0	0	2
(C1-set);(MHC_I)_(C1-set)	16	11	36	501	1055	83	536	0	3	2
(C1-set);(MHC_I)_(C1-set)	17	11	18	501	1055	65	418	0	0	2
(C1-set);(MHC_I)_(C1-set)	18	9	19	501	1055	67	282	0	5	2
(C1-set);(MHC_I)_(C1-set)	19	9	14	501	1055	41	258	0	7	2
(C1-set);(MHC_I)_(C1-set)	20	9	15	501	1055	67	236	0	0	2
(C1-set);(MHC_I)_(C1-set)	21	8	13	501	1055	22	308	0	15	2
(C1-set);(MHC_I)_(C1-set)	22	7	9	501	1055	24	261	0	0	1
(C1-set);(MHC_I)_(C1-set)	23	6	10	501	1055	73	225	0	20	1
(C1-set);(MHC_I)_(C1-set)	24	6	7	501	1055	65	270	0	0	1
(C1-set);(MHC_I)_(C1-set)	25	5	30	501	1055	29	199	0	0	1
(C1-set);(MHC_I)_(C1-set)	26	5	7	501	1055	20	264	0	29	1
(C1-set);(MHC_I)_(C1-set)	28	5	5	501	1055	24	471	0	0	1
(C1-set);(MHC_I)_(C1-set)	29	5	5	501	1055	22	347	0	0	1
(Complex1_30kDa);(Fer4_7)	1	57	57	69	77	19	271	100	21	83
(Complex1_30kDa);(Oxidored_q6)	1	69	77	80	88	19	638	100	34	86
(Complex1_LYR);(NDUF_B8)	1	43	43	52	52	83	421	100	7</