Protein Common Interface Database

Clusters with M>=5,SeqId<90 and pair Pfam Architecture

Pfam Architecture	Cluster#	#CFs/Cluster	#Entries/Cluster	#CFs/Group	#Entries/Group	Minimum Seq Identity	Surface Area	In PDBBA(%)	In PISABA(%)	CFs Cluster/Group(%)
(Proteasome);(Proteasome)_(Pr_beta_C)	1	39	281	43	349	14	1115	100	94	91
(Proteasome);(Proteasome)_(Pr_beta_C)	2	28	227	43	349	18	887	100	92	65
(Proteasome);(Proteasome)_(Pr_beta_C)	3	28	267	43	349	13	1404	100	95	65
(Proteasome);(Proteasome_A_N)_(Proteasome)	1	50	298	54	365	6	492	100	88	93
(Proteasome);(Proteasome_A_N)_(Proteasome)	2	50	298	54	365	3	426	100	88	93
(Proteasome);(Proteasome_A_N)_(Proteasome)	3	9	9	54	365	18	590	100	22	17
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	1	43	280	43	349	15	635	100	89	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	2	43	239	43	349	10	633	100	85	100
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(CaM_bdg_C0);(AN F_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(NMDAR2_C)	1	8	8	8	8	62	1592	100	38	100
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(CaM_bdg_C0);(AN F_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(NMDAR2_C)	2	8	8	8	8	68	1088	100	38	100
(TBP)_(TBP);(TFIIA)	1	15	16	15	16	36	667	100	25	100
(TFIIA);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	15	16	15	16	34	2109	100	31	100
(KOW)_(ribosomal_L24);(Ribosomal_L23)	1	6	6	6	6	80	748	67	50	100
(Ribosomal_L13);(Ribosomal_L20)	1	215	361	218	372	10	524	99	20	99
(Ribosomal_L13);(Ribosomal_L3)	1	93	107	109	183	10	407	32	8	85
(Ribosomal_L13);(Ribosomal_L3)	2	9	69	109	183	16	249	100	3	8
(Ribosomal_L14);(Ribosomal_L19)	1	210	357	226	380	0	802	99	18	93
(Ribosomal_L14);(Ribosomal_L19)	2	7	9	226	380	26	743	100	33	3
(Ribosomal_L14);(Ribosomal_L3)	1	113	187	120	194	10	416	59	9	94
(Ribosomal_L16);(Ribosomal_L27)	1	44	101	52	121	22	270	97	4	85
(Ribosomal_L16);(Ribosomal_L30)	1	6	6	6	6	88	426	67	50	100
(Ribosomal_L17);(Ribosomal_L32p)	1	204	349	217	367	0	354	99	17	94
(Ribosomal_L17);(Ribosomal_L32p)	2	9	9	217	367	19	532	67	67	4
(Ribosomal_L18p);(Ribosomal_L27)	1	7	8	15	16	43	242	100	12	47
(Ribosomal_L18p);(Ribosomal_L27)	2	6	6	15	16	87	1087	67	50	40
(Ribosomal_L19);(Ribosomal_L3)	1	204	350	219	373	0	717	98	18	93
(Ribosomal_L19);(Ribosomal_L3)	3	6	8	219	373	54	727	100	25	3
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)	1	23	23	59	72	40	225	100	52	39
(Ribosomal_L20);(Ribosomal_L21p)	1	221	371	223	378	10	967	99	18	99
(Ribosomal_L22);(Ribosomal_L32p)	1	209	359	221	376	2	464	99	19	95
(Ribosomal_L23);(Ribosomal_L29)	1	215	421	225	440	0	486	99	15	96
(Ribosomal_L23);(Ribosomal_L29)	2	10	11	225	440	10	540	100	9	4
(Ribosomal_L27A);(Ribosomal_L35p)	1	202	342	220	373	0	786	98	17	92
(Ribosomal_L27A);(Ribosomal_L35p)	2	11	16	220	373	10	546	100	62	5
(Ribosomal_L27A);(Ribosomal_L4)	1	180	299	220	373	2	460	98	21	82
(Ribosomal_L27A);(Ribosomal_L4)	2	22	31	220	373	10	430	100	0	10
(Ribosomal_L27A);(Ribosomal_L4)	3	12	22	220	373	10	355	100	41	5
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	1	102	201	131	240	7	971	99	17	78
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	2	10	11	131	240	10	659	100	18	8
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	4	5	5	131	240	27	603	100	20	4
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)	1	101	115	104	118	2	756	37	12	97
(ABC_tran)_(TOBE_2);(BPD_transp_1)	1	6	16	6	16	12	821	100	94	100
(AAA);(Proteasome_A_N)_(Proteasome)	1	15	15	21	21	61	495	100	87	71
(AAA);(Proteasome_A_N)_(Proteasome)	2	13	13	21	21	15	404	100	54	62
(AAA);(Proteasome_A_N)_(Proteasome)	3	8	8	21	21	26	426	100	88	38
(AAA);(Proteasome_A_N)_(Proteasome)	4	7	7	21	21	31	625	100	86	33
(AAA);(Proteasome_A_N)_(Proteasome)	5	6	6	21	21	57	339	100	83	29
(AAA);(Proteasome_A_N)_(Proteasome)	6	5	5	21	21	55	510	100	80	24
(CSN8_PSD8_EIF3K);(JAB)	1	13	13	21	21	31	317	100	77	62
(CSN8_PSD8_EIF3K);(JAB)	2	5	5	21	21	9	244	100	20	24
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)	2	6	6	21	21	32	315	100	67	29
(CSN8_PSD8_EIF3K);(RPN7)_(PCI)	1	8	8	8	8	73	321	100	25	100
(DSS1_SEM1);(RPN7)_(PCI)	1	22	22	31	31	10	729	100	68	71
(DSS1_SEM1);(RPN7)_(PCI)	2	9	9	31	31	89	1025	100	0	29
(JAB);(JAB)_(MitMem_reg)	1	28	30	36	39	19	2989	100	77	78
(JAB)_(MitMem_reg);(RPN7)_(PCI)	1	22	23	33	34	10	468	100	39	67
(JAB)_(MitMem_reg);(RPN7)_(PCI)	4	8	8	33	34	38	377	100	100	24
(DSS1_SEM1);(PCI)	1	6	6	6	6	21	2173	100	100	100
(G-alpha);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	8	9	8	9	34	1299	100	89	100
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	18	34	18	36	10	2253	100	97	100
(JAB)_(MitMem_reg);(PCI)	1	9	10	16	17	23	557	100	20	56
(JAB)_(MitMem_reg);(VWA_2)	1	24	24	24	24	48	640	100	54	100
(PCI);(RPN7)_(PCI)	1	15	16	15	16	8	1266	100	50	100
(ubiquitin);(UCH)	1	9	18	18	27	10	1826	100	100	50
(eIF-6);(Ribosomal_L14)	1	10	10	10	10	60	861	100	60	100
(eIF-6);(Ribosomal_L24e)	1	7	7	7	7	52	490	100	86	100
(eIF-6);(Ribosomal_L3)	1	7	7	7	7	61	285	100	71	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	1	62	76	92	106	10	767	25	4	67
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	2	29	29	92	106	5	689	45	28	32
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)	1	93	107	95	109	1	955	33	11	98
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	73	87	75	89	10	459	29	14	97
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	1	28	28	38	38	10	278	100	32	74
(Ribosomal_L13);(Ribosomal_L18A)	1	70	84	94	108	15	681	27	4	74
(Ribosomal_L13);(Ribosomal_L35Ae)	1	57	59	77	91	10	241	29	5	74
(Ribosomal_L14);(Ribosomal_L24e)	1	114	188	119	194	0	513	60	9	96
(Ribosomal_L14);(Ribosomal_L24e)	2	5	6	119	194	29	524	83	17	4
(Ribosomal_L15e);(Ribosomal_L29)	1	98	112	98	112	20	355	35	11	100
(Ribosomal_L15e);(Ribosomal_L7Ae)	1	112	186	112	186	3	919	59	7	100
(Ribosomal_L18);(Ribosomal_L27A)	1	97	111	100	114	10	888	35	10	97
(Ribosomal_L18A);(Ribosomal_L21e)	1	94	108	94	108	1	897	33	10	100
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)	1	92	106	95	109	10	303	33	11	97
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)	1	106	180	108	182	10	1219	59	6	98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)	1	91	105	91	105	10	300	32	10	100
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	96	110	100	114	10	848	32	8	96
(Ribosomal_L24e);(Ribosomal_L3)	1	98	112	104	118	0	599	33	12	94
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)	1	19	33	21	35	8	343	0	0	90
(Ribosomal_L29);(Ribosomal_L37e)	1	23	23	23	23	38	206	39	4	100
(Ribosomal_L34e);(Ribosomal_L7Ae)	1	95	109	99	113	10	263	33	10	96
(Ribosomal_L37ae);(Ribosomal_L7Ae)	1	8	8	10	10	18	247	12	0	80
(Ribosomal_L37e);(Ribosomal_L39)	1	75	89	78	92	39	230	28	11	96
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)	1	91	105	95	109	10	244	30	10	96
(EF-hand_8)_(EF-hand_7);(Troponin)	1	6	7	6	7	44	1893	100	100	100
(GP120);(ig)_(C2-set)	1	6	6	6	6	82	993	100	17	100
(GP120);(Ig_3)_(C1-set)	1	5	5	9	11	52	256	80	40	56
(GP120);(Toxin_2)	1	6	10	6	10	10	715	100	30	100
(Actin);(WH2)	1	8	9	8	9	30	962	100	100	100
(Actin);(RPEL)	1	7	7	7	7	31	914	100	100	100
(Activin_recp);(TGF_beta)	1	7	11	12	17	15	772	100	91	58
(Activin_recp);(TGF_beta)	2	7	11	12	17	15	361	91	82	58
(Activin_recp);(TGF_beta)	3	7	8	12	17	41	753	100	50	58
(LON_substr_bdg)_(Yippee-Mis18);(MMS1_N)_(CPSF_A)	1	5	7	5	7	86	2246	100	86	100
(AdenylateSensor);(CBS)_(CBS)_(CBS)_(CBS)	1	7	21	7	21	22	779	100	100	100
(AdenylateSensor);(AMPKBI)	1	6	20	6	20	22	1987	100	100	100
(AMPKBI);(CBS)_(CBS)_(CBS)_(CBS)	1	7	21	7	21	33	1108	100	100	100
(DNA_RNApol_7kD);(RNA_pol_A_bac)	1	70	176	70	207	20	575	100	63	100
(DNA_RNApol_7kD);(RNA_pol_N)	1	10	14	30	102	40	189	100	71	33
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	55	162	55	193	16	1008	100	62	100
(RNA_pol_A_bac);(RNA_pol_L_2)	1	70	176	70	207	4	2036	100	73	100
(RNA_pol_A_bac);(RNA_pol_N)	1	70	176	70	207	20	1110	100	83	100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	27	110	31	164	49	359	100	73	87
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	52	154	52	185	22	1703	100	84	100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	41	143	41	174	35	963	100	57	100
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	48	153	55	193	23	446	100	73	87
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	42	144	42	175	44	1550	100	81	100
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	41	143	52	185	44	1379	100	68	79
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	55	162	55	193	37	1535	100	84	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	39	141	41	174	53	9130	100	72	95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)	1	8	34	21	94	52	243	100	50	38
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)	1	42	144	42	175	42	2104	100	81	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	41	143	42	175	53	1904	100	80	98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	41	143	42	175	29	1469	100	80	98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	34	84	35	108	10	596	100	58	97
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)	1	17	18	17	18	33	2050	100	17	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(SHS2_Rpb7-N)_(S1)	1	9	14	22	95	17	261	100	57	41
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	17	18	17	18	33	1720	100	11	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_beta)	1	10	10	13	13	33	1353	100	10	77
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)	1	40	94	42	120	2	2082	100	59	95
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)	1	37	91	38	116	17	449	99	55	97
(TBP)_(TBP);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	14	14	14	14	33	519	100	7	100
(TBP)_(TBP);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	17	18	17	18	40	450	100	28	100
(Peptidase_C12);(ubiquitin)	1	8	10	8	10	11	1133	100	100	100
(IBN_N)_(Xpo1)_(B56)_(CRM1_C);(Ras)	1	5	18	5	20	45	2053	100	100	100
(Ran_BP1);(Ras)	1	14	38	14	38	22	2110	100	97	100
(F_actin_cap_B);(F-actin_cap_A)	1	18	20	18	20	10	3537	100	65	100
(Actin);(P21-Arc)	1	7	20	7	20	32	857	100	90	100
(Actin);(P34-Arc)	1	7	20	7	20	45	1647	100	100	100
(ARPC4);(P16-Arc)	1	7	20	7	20	29	913	100	100	100
(ARPC4);(P34-Arc)	1	7	20	7	20	11	2113	100	95	100
(Actin);(Gelsolin)	1	11	31	11	31	10	1206	100	100	100
(Actin);(Gelsolin)	2	6	25	11	31	10	398	0	0	55
(Actin);(Gelsolin)	3	5	24	11	31	80	274	0	0	45
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	1	7	15	7	15	42	420	100	93	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	2	7	15	7	15	42	684	100	93	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	3	5	13	7	15	47	379	0	0	71
(ETF);(ETF)_(ETF_alpha)	1	10	16	10	16	10	3105	100	100	100
(Adaptin_N);(Clat_adaptor_s)	1	6	8	8	10	11	2610	100	100	75
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_Penton_B)	1	5	5	5	5	62	1346	100	0	100
(Amidase);(GatB_N)_(GatB_Yqey)	1	6	12	6	12	37	1326	100	100	100
(Amidase);(Glu-tRNAGln)	1	5	11	5	11	25	2486	100	100	100
(GatB_N)_(GatB_Yqey);(Glu-tRNAGln)	1	5	11	5	11	25	1786	100	100	100
(Globin);(NEAT)	1	6	6	6	6	45	624	83	50	100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(FAD_binding_5)_(CO_deh_flav_ C)	1	9	26	9	26	13	1187	100	100	100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(Fer2)_(Fer2_2)	1	5	15	5	15	21	1976	100	100	100
(CBFD_NFYB_HMF);(MCM2_N)	1	5	6	5	6	83	1186	100	100	100
(Histone);(MCM2_N)	1	5	6	5	6	83	843	100	100	100
(Med21);(Med7)	1	5	6	5	6	23	1731	100	50	100
(Med31);(Med7)	1	5	6	5	6	10	1045	100	50	100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)	1	13	68	13	71	10	4673	100	100	100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)	2	6	32	13	71	10	422	100	100	46
(Phenol_Hydrox)_(YHS);(TmoB)	1	7	37	7	39	52	1321	100	100	100
(HAV_VP);(Rhv)	1	9	9	12	13	10	1432	100	22	75
(Cytochrom_B_C);(Cytochrome_B)	1	5	13	5	13	11	3070	100	100	100
(Me-amine-dh_H);(Me-amine-dh_L)	1	14	69	14	69	12	1511	99	94	100
(Me-amine-dh_H);(Me-amine-dh_L)	2	14	69	14	69	12	1142	94	96	100
(Sld5);(Sld5)_(SLD5_C)	1	7	8	7	8	18	2007	100	62	100
(Sld5);(Sld5)_(SLD5_C)	2	7	8	7	8	16	1428	100	62	100
(Sld5);(Sld5)_(SLD5_C)	3	7	8	7	8	18	243	100	62	100
(ATP1G1_PLM_MAT8);(Na_K-ATPase)	1	6	30	7	32	20	397	100	100	86
(Skp1_POZ);(ubiquitin)	1	17	50	17	51	10	1072	100	96	100
(Kinesin);(Tubulin)_(Tubulin_C)	1	24	24	41	41	28	600	96	29	59
(Kinesin);(Tubulin)_(Tubulin_C)	2	23	23	41	41	28	654	96	30	56
(Stathmin);(Tubulin)_(Tubulin_C)	1	5	94	5	110	56	657	100	98	100
(Stathmin);(Tubulin)_(Tubulin_C)	2	5	94	5	110	56	1538	100	97	100
(Thrombin_light);(Trypsin)	1	96	359	98	430	10	1162	100	99	98
(Thrombin_light);(Trypsin)	2	20	33	98	430	74	265	3	15	20
(Thrombin_light);(Trypsin)	5	6	15	98	430	75	327	0	0	6
(Thrombin_light);(Trypsin)	6	5	5	98	430	74	641	0	20	5
(NusB);(Ribosomal_S10)	1	6	7	6	7	23	806	86	14	100
(Antistasin);(Trypsin)	1	5	5	5	5	10	572	100	100	100
(ubiquitin);(UQ_con)	1	18	18	37	45	27	819	100	67	49
(ubiquitin);(UQ_con)	2	9	12	37	45	10	665	67	42	24
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	1	207	422	312	571	1	406	99	19	66
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	2	96	110	312	571	10	477	33	8	31
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	1	209	437	312	571	0	865	100	20	67
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	2	98	112	312	571	10	411	32	8	31
(OTU);(ubiquitin)	1	12	14	12	14	10	1021	100	93	100
(Ribosom_S12_S23);(Ribosomal_S17)	1	181	388	198	441	10	221	99	25	91
(Ribosomal_L13);(Ribosomal_S18)	1	5	5	5	5	85	2361	60	40	100
(Ribosomal_L21p);(Ribosomal_S18)	1	5	5	5	5	77	505	60	40	100
(Ribosomal_L27);(Ribosomal_S10)	1	5	5	5	5	76	411	60	40	100
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	1	81	106	142	266	0	273	98	25	57
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	2	33	125	142	266	10	218	100	6	23
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	3	11	11	142	266	12	919	82	55	8
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	1	93	144	179	299	10	305	100	22	52
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	2	25	25	179	299	59	290	4	0	14
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	4	6	7	179	299	10	245	100	14	3
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)	1	26	40	26	40	24	270	15	5	100
(Ribosomal_S10);(Ribosomal_S14)	1	218	444	321	580	0	801	98	22	68
(Ribosomal_S10);(Ribosomal_S14)	2	102	116	321	580	0	750	34	9	32
(Ribosomal_S10);(Ribosomal_S9)	1	16	16	34	41	17	288	81	0	47
(Ribosomal_S11);(Ribosomal_S18)	1	89	280	115	338	10	312	100	8	77
(Ribosomal_S11);(Ribosomal_S18)	2	7	7	115	338	10	287	71	0	6
(Ribosomal_S11);(Ribosomal_S21)	1	111	135	129	157	0	1038	97	23	86
(Ribosomal_S11);(Ribosomal_S7)	1	166	357	195	428	10	243	99	22	85
(Ribosomal_S13);(Ribosomal_S19)	1	311	548	320	579	0	440	86	13	97
(Ribosomal_S14);(Ribosomal_S19)	1	105	132	123	151	10	306	98	23	85
(Ribosomal_S18);(Ribosomal_S21)	1	65	88	101	128	10	251	95	20	64
(Ribosomal_S18);(Ribosomal_S6)	1	212	435	223	468	0	929	99	14	95
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)	1	7	7	13	13	20	474	57	0	54
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	1	166	384	264	523	10	324	99	23	63
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	2	58	72	264	523	37	367	29	10	22
(Ribosomal_S4)_(S4);(Ribosomal_S6)	2	8	26	60	179	10	257	0	0	13
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	1	201	419	325	584	1	574	99	20	62
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	2	105	119	325	584	10	544	34	10	32
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	4	5	12	325	584	20	449	100	25	2
(Ribosomal_S7);(Ribosomal_S9)	1	260	465	293	528	0	453	84	16	89
(Beta-lactamase2);(BLIP)	1	7	14	7	14	39	1214	93	100	100
(LRR_9);(RRM_1)	1	9	9	9	9	24	561	100	33	100
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)	1	5	8	5	8	68	1210	100	88	100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	1	5	10	5	10	34	666	100	100	100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	2	5	10	5	10	34	420	100	100	100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	1	24	53	25	55	10	497	100	91	96
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	2	21	50	25	55	23	514	100	94	84
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	3	21	51	25	55	31	569	100	90	84
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	1	22	52	25	55	10	580	100	90	88
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	2	20	50	25	55	23	253	100	90	80
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	3	18	34	25	55	31	274	100	91	72
(ATP-synt);(ATP-synt_Eps)	1	24	37	24	37	10	795	100	84	100
(ATP-synt_A);(ATP-synt_C)	1	9	9	11	11	13	560	100	11	82
(ATP-synt_A);(ATP-synt_C)	2	7	7	11	11	25	475	100	14	64
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab)_ (ATP-synt_ab_C)	1	39	70	42	73	18	1982	100	87	93
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	1	6	6	18	18	22	347	100	33	33
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	2	5	5	18	18	22	346	100	0	28
(ATP-synt);(ATP-synt_DE_N)	1	5	5	6	6	54	868	100	40	83
(C1-set);(MHC_I)_(ig)	1	9	11	9	11	50	1257	100	100	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	1	11	11	11	11	52	1513	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	2	11	11	11	11	52	1010	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(vATP-synt_E)	1	12	12	13	13	16	642	100	0	92
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)	1	5	5	5	5	32	600	100	20	100
(B);(C1-set)_(C1-set)	1	6	10	6	10	59	719	90	70	100
(MHC_I)_(C1-set);(V-set)_(DUF1968)	1	15	45	19	55	38	585	91	42	79
(Histone);(Histone)_(Histone_H2A_C)	1	42	127	49	187	10	2495	100	93	86
(Histone);(Histone)_(Histone_H2A_C)	2	39	168	49	187	42	673	99	95	80
(SKIP_SNW);(SYF2)	1	8	8	8	8	10	545	100	25	100
(Bcl-2);(Bclx_interact)	1	8	11	18	26	12	1031	100	100	44
(Bcl-2);(Bclx_interact)	2	7	12	18	26	10	771	100	100	39
(Bclx_interact);(BH4)_(Bcl-2)	1	12	14	12	14	10	1009	100	100	100
(Ras);(RhoGEF)_(PH)	1	13	15	14	16	10	1508	100	100	93
(CENP-S);(CENP-X)	1	7	13	7	13	10	2295	100	100	100
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	1	13	52	13	52	20	1776	100	96	100
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	2	10	24	13	52	29	316	100	100	77
(Brix);(RRS1)	1	5	5	5	5	34	2314	100	80	100
(EMG1);(Ribosomal_S7)	1	5	5	5	5	69	362	100	0	100
(Fibrillarin);(NOP5NT)_(Nop)	1	6	8	9	11	31	1367	100	75	67
(NOP5NT)_(Nop);(Ribosomal_L7Ae)	1	5	7	8	10	31	688	100	71	62
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)	1	30	30	36	36	10	370	3	0	83
(Ribosomal_S11);(Ribosomal_S28e)	1	36	36	43	43	46	303	31	6	84
(Ribosomal_S11);(Ribosomal_S3Ae)	1	92	106	102	116	10	867	39	10	90
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)	1	19	19	20	20	35	255	42	11	95
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)	1	26	26	31	31	31	230	42	19	84
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)	1	40	42	41	43	10	210	33	14	98
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)	1	101	115	101	115	10	738	37	10	100
(Ribosomal_S24e);(Ribosomal_S4)_(S4)	1	53	67	54	68	10	234	28	7	98
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C)	1	6	6	6	6	39	538	83	0	100
(Ribosomal_S28e);(Ribosomal_S7)	1	103	117	105	119	10	1143	36	9	98
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C)	1	5	5	5	5	39	321	80	0	100
(Ribosomal_S7e);(Ribosomal_S8)	1	100	114	100	114	10	467	36	10	100
(Cullin)_(Cullin_Nedd8);(zf-rbx1)	1	12	12	12	12	10	2009	100	100	100
(Cullin_binding);(Cullin_Nedd8)	1	5	5	5	5	24	554	80	0	100
(Mago_nashi);(RRM_1)	1	11	11	11	11	63	1272	100	91	100
(Cys_knot);(Hormone_6)	1	5	7	5	7	10	2132	100	100	100
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)	1	15	23	26	35	52	302	91	35	58
(Inhibitor_I9);(Peptidase_S8)	1	18	27	18	27	10	1268	96	100	100
(C1-set);(V-set)_(C1-set)	1	5	13	71	134	52	299	0	23	7
(MHC_I)_(C1-set);(V-set)_(C1-set)	1	11	15	20	56	40	432	93	20	55
(MHC_I)_(C1-set);(V-set)_(C1-set)	2	6	32	20	56	38	532	88	50	30
(V-set)_(C1-set);(V-set)_(DUF1968)	1	179	309	184	324	10	2037	100	98	97
(V-set)_(C1-set);(V-set)_(DUF1968)	2	10	16	184	324	18	726	0	0	5
(V-set)_(C1-set);(V-set)_(DUF1968)	3	6	9	184	324	65	251	0	11	3
(V-set)_(C1-set);(V-set)_(DUF1968)	4	5	8	184	324	66	309	0	0	3
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)	1	28	32	31	41	20	354	97	25	90
(TBP)_(TBP);(TFIIB)_(TFIIB)	1	6	8	6	8	15	1190	100	88	100
(MMS1_N)_(CPSF_A);(WD40)_(WD40)_(WD40)_(WD40)	1	6	11	6	11	50	2103	100	100	100
(Cupin_1);(Cupin_2)	1	5	6	5	6	89	1148	100	100	100
(Cupin_1);(Cupin_2)	2	5	6	5	6	15	1967	100	100	100
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_17)	1	7	51	7	51	10	2566	100	100	100
(Fer2_3)_(Fer4_17);(Sdh_cyt)	1	5	22	7	51	19	1518	100	100	71
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)_(C1-set)	1	7	9	12	14	22	689	100	44	58
(Cystatin);(Peptidase_C1)	1	6	7	6	7	21	894	100	100	100
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)	1	23	31	31	41	10	343	94	26	74
(MHC_II_beta)_(C1-set);(MHC2-interact)	1	5	5	10	11	55	683	100	100	50
(C1-set);(MHC_I_3)_(C1-set)	1	18	71	18	75	20	1286	100	100	100
(MHC_I_3)_(C1-set);(V-set)_(C1-set)	1	5	36	8	42	62	305	100	89	62
(UQ_con);(zf-RING_2)	1	8	8	8	8	27	608	100	38	100
(MHC_I_3)_(C1-set);(V-set)_(DUF1968)	1	5	36	8	42	62	452	100	89	62
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	1	7	14	7	14	43	366	93	7	100
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	2	7	14	7	14	43	472	93	7	100
(Lys);(V-set)_(C1-set)	1	5	14	13	25	84	391	100	14	38
(Lys);(V-set)_(C1-set)	2	5	14	13	25	84	518	100	14	38
(CRPV_capsid);(Waikav_capsid_1)	1	8	10	8	10	16	1353	20	10	100
(CRPV_capsid);(Waikav_capsid_1)	2	8	10	8	10	16	1324	20	10	100
(Synaptobrevin);(Syntaxin)_(SNARE)	1	20	24	20	25	4	1372	100	83	100
(Pico_P1A);(Rhv)	1	43	127	47	135	10	1013	100	65	91
(Pico_P1A);(Rhv)	2	36	120	47	135	10	809	100	62	77
(Pico_P1A);(Rhv)	3	33	104	47	135	28	533	100	60	70
(CX9C)_(CHCH);(MWFE)	1	5	5	5	5	64	726	80	80	100
(CX9C)_(CHCH);(NADHdh_A3)	1	5	5	5	5	64	844	80	80	100
(Calici_coat)_(Calici_coat_C);(V-set)	1	5	5	10	10	56	725	100	100	50
(CX9C)_(CHCH);(Ndufs5)	1	5	5	5	5	64	366	80	80	100
(DCP1);(PNRC)	1	5	6	6	7	31	785	100	100	83
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Gar1)	1	5	5	5	5	24	855	100	100	100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Nop10p)	1	10	10	10	10	27	1331	100	100	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	26	59	26	59	10	1937	100	90	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	2	24	56	26	59	10	257	100	95	92
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	2	8	8	25	25	10	444	0	0	32
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	3	6	6	25	25	10	472	33	0	24
(MCM_N)_(MCM_OB)_(MCM);(MCM2_N)_(MCM_N)_(MCM_OB)_(MCM)	1	12	12	12	12	18	2564	100	42	100
(Cyclin_N)_(Cyclin_C);(Pkinase)	1	22	80	23	119	10	1533	99	98	96
(CENP-T_C);(Histone)	1	10	17	14	22	11	520	100	76	71
(CENP-T_C);(Histone)	2	10	17	14	22	89	275	100	76	71
(CENP-T_C);(Histone)	3	7	14	14	22	46	2448	100	86	50
(E3_binding);(Pyr_redox_2)_(Pyr_redox_dim)	1	6	6	6	6	22	478	100	17	100
(E3_binding);(Pyr_redox_2)_(Pyr_redox_dim)	2	6	6	6	6	22	409	100	17	100
(CR6_interact);(MRP-L51)	1	6	6	6	6	76	419	67	33	100
(CR6_interact);(Ribosomal_L27A)	1	5	5	5	5	76	1079	60	40	100
(CR6_interact);(Ribosomal_L28)	1	5	5	5	5	76	388	60	40	100
(CR6_interact);(Ribosomal_L33)	1	5	5	5	5	76	510	60	40	100
(CR6_interact);(Ribosomal_L4)	1	5	5	5	5	76	466	60	40	100
(Img2);(MRP-63)	1	6	6	6	6	74	594	67	33	100
(Img2);(Ribosomal_L27A)	1	5	5	5	5	87	1356	60	40	100
(Img2);(Ribosomal_L4)	1	9	9	9	9	18	975	44	22	100
(KOW)_(ribosomal_L24);(MRP-L27)	1	5	5	5	5	77	1342	60	40	100
(KOW)_(ribosomal_L24);(MRP-L47)	1	6	6	6	6	81	1508	67	50	100
(KOW)_(ribosomal_L24);(Tim44)	1	6	6	6	6	81	724	67	33	100
(L51_S25_CI-B8);(MRP-63)	1	6	6	6	6	74	377	67	33	100
(L51_S25_CI-B8);(MRP-S32)	1	6	6	6	6	73	616	67	50	100
(L51_S25_CI-B8);(Ribonucleas_3_3)_(dsrm)	1	6	6	6	6	86	1480	67	50	100
(L51_S25_CI-B8);(Ribosomal_L13)	1	6	6	9	9	20	754	67	33	67
(L51_S25_CI-B8);(Ribosomal_L20)	1	5	5	5	5	87	587	60	40	100
(L51_S25_CI-B8);(Ribosomal_L21p)	1	6	6	9	9	10	1266	67	33	67
(L51_S25_CI-B8);(Ribosomal_L50)	1	6	6	10	10	80	680	67	50	60
(MRP_L53);(Ribosomal_L10)	1	5	5	5	5	85	834	60	40	100
(MRP_L53);(Ribosomal_S18)	1	6	6	6	6	85	502	67	33	100
(MRP-63);(Ribosomal_L10)	1	5	5	5	5	74	488	60	40	100
(MRP-63);(Ribosomal_L16)	1	5	5	5	5	74	332	60	40	100
(MRP-63);(Ribosomal_L27A)	1	5	5	5	5	74	510	60	40	100
(MRP-63);(Ribosomal_L30)	1	5	5	5	5	74	1224	60	40	100
(MRP-L27);(MRP-L47)	1	6	6	9	9	16	1694	67	33	67
(MRP-L27);(Ribosomal_L23)	1	9	9	9	9	10	1414	44	22	100
(MRP-L27);(Ribosomal_L28)	1	5	5	5	5	77	488	60	40	100
(MRP-L27);(Ribosomal_L34)	1	9	9	9	9	25	414	44	22	100
(MRP-L28);(Ribosomal_S10)	1	6	6	6	6	72	1262	67	50	100
(MRP-L47);(MRP-L51)	1	5	5	5	5	82	236	60	40	100
(MRP-L47);(PDCD9)	1	5	5	5	5	83	558	60	40	100
(MRP-L47);(Ribosomal_L23)	1	9	9	9	9	15	1686	44	33	100
(MRP-L47);(Ribosomal_L28)	1	6	6	6	6	83	445	67	50	100
(MRP-L47);(Ribosomal_L34)	1	6	6	6	6	83	527	67	50	100
(MRP-L51);(Ribonucleas_3_3)_(dsrm)	1	6	6	6	6	82	388	67	33	100
(MRP-L51);(Ribosomal_L27A)	1	5	5	5	5	82	272	60	40	100
(MRP-L51);(Ribosomal_L28)	1	5	5	5	5	82	333	60	40	100
(MRP-L51);(Ribosomal_L35p)	1	5	5	5	5	80	380	60	40	100
(MRP-L51);(Ribosomal_L4)	1	5	5	5	5	82	1810	60	40	100
(MRP-S32);(Ribonucleas_3_3)_(dsrm)	1	5	5	5	5	73	683	60	60	100
(MRP-S32);(Ribosomal_L13)	1	5	5	5	5	73	295	60	40	100
(PBP);(RF-1)	1	7	7	7	7	79	835	71	29	100
(PBP);(Ribosomal_L18p)	1	6	6	6	6	82	2371	67	33	100
(PBP);(Ribosomal_L27)	1	5	5	8	8	87	1806	60	40	62
(PBP);(Ribosomal_L27A)	1	5	5	5	5	88	270	60	40	100
(PBP);(Ribosomal_L35p)	1	5	5	5	5	80	1102	60	40	100
(PBP);(Ribosomal_S10)	1	6	6	6	6	76	683	67	33	100
(PDCD9);(Ribosomal_L2)_(Ribosomal_L2_C)	1	5	5	5	5	85	772	60	40	100
(PDCD9);(Ribosomal_L23)	1	5	5	5	5	80	515	60	40	100
(PDCD9);(Ribosomal_L28)	1	5	5	5	5	83	852	60	40	100
(RF-1);(Ribosomal_L27A)	1	6	6	6	6	79	1243	67	33	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L13)	1	5	5	5	5	88	812	60	40	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L20)	1	5	5	5	5	87	369	60	40	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L21p)	1	5	5	5	5	77	320	60	40	100
(Ribosomal_L10);(Ribosomal_L16)	1	6	6	6	6	85	1172	67	50	100
(Ribosomal_L3);(TGS)_(tRNA_SAD)	1	6	6	6	6	83	540	67	33	100
(Ribosomal_L32p);(TGS)_(tRNA_SAD)	1	5	5	5	5	85	253	60	40	100
(Ribosomal_L4);(Ribosomal_L50)	1	5	5	8	8	80	993	60	40	62
(Ecotin);(Trypsin)	1	12	17	12	17	27	952	100	100	100
(Ecotin);(Trypsin)	2	10	15	12	17	27	512	93	100	83
(TGS)_(tRNA_SAD);(Tim44)	1	6	6	6	6	83	555	67	33	100
(EF-hand_7);(Lectin_leg-like)	1	6	9	6	9	88	763	100	100	100
(Fer4_7);(PsaA_PsaB)	1	13	19	13	19	78	410	100	47	100
(Fer4_7);(PsaA_PsaB)	2	13	19	13	19	0	841	100	47	100
(Fer4_7);(PsaD)	1	13	19	13	19	56	1470	100	47	100
(Fer4_7);(PSI_PsaE)	1	13	19	13	19	10	503	100	42	100
(PsaA_PsaB);(PsaD)	1	13	19	13	19	56	775	100	53	100
(PsaA_PsaB);(PsaD)	2	13	19	13	19	56	714	100	53	100
(PsaA_PsaB);(PsaL)	1	12	18	12	18	39	481	100	50	100
(PsaA_PsaB);(PsaL)	2	9	15	12	18	39	326	100	60	75
(PsaA_PsaB);(PSI_8)	1	12	18	12	18	35	649	100	50	100
(PsaA_PsaB);(PSI_PsaE)	1	12	18	12	18	43	423	100	44	100
(PsaA_PsaB);(PSI_PsaE)	2	10	13	12	18	43	295	100	38	83
(PsaA_PsaB);(PSI_PsaF)	1	11	17	11	17	42	895	100	47	100
(PsaA_PsaB);(PSI_PsaF)	2	11	17	11	17	42	920	100	47	100
(PsaA_PsaB);(PSI_PsaJ)	1	10	13	10	13	12	369	100	46	100
(PsaA_PsaB);(PSI_PSAK)	1	7	10	10	16	3	417	100	30	70
(PsaD);(PsaL)	1	9	15	9	15	39	453	100	60	100
(PsaL);(PSI_8)	1	5	7	6	8	41	245	100	57	83
(PSI_PsaE);(PSI_PsaF)	1	6	8	6	8	45	256	100	38	100
(PSI_PsaF);(PSI_PsaJ)	1	11	17	11	17	38	685	100	41	100
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)	1	16	41	16	43	16	751	100	66	100
(Cytochrom_B559);(Photo_RC)	1	17	41	17	44	10	466	100	71	100
(Cytochrom_B559);(PsbJ)	1	13	38	13	40	10	373	100	50	100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	1	15	39	16	43	31	1323	100	67	94
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	2	15	40	16	43	10	311	100	68	94
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)	1	13	38	13	40	10	384	100	50	100
(MSP);(Photo_RC)	1	15	39	15	42	10	704	100	49	100
(MSP);(Photo_RC)	2	14	38	15	42	31	673	100	55	93
(MSP);(PSII)	1	15	38	15	42	43	1297	100	55	100
(MSP);(PSII)	2	13	37	15	42	43	767	100	51	87
(MSP);(PSII)	3	12	25	15	42	45	389	60	8	80
(Photo_RC);(PsbH)	1	15	39	15	42	31	271	100	64	100
(Photo_RC);(PsbI)	1	15	40	15	42	10	859	100	45	100
(Photo_RC);(PsbL)	1	15	39	15	42	10	400	100	56	100
(Photo_RC);(PsbL)	2	15	40	15	42	10	252	100	57	100
(Photo_RC);(PsbT)	1	15	40	15	42	42	513	100	57	100
(Photo_RC);(PsbT)	2	12	35	15	42	31	209	100	57	80
(Photo_RC);(PsbX)	1	14	37	14	41	31	588	100	62	100
(Photo_RC);(PSII)	1	16	41	16	43	17	803	100	80	100
(Photo_RC);(PSII)	2	16	40	16	43	31	2751	100	72	100
(Photo_RC);(PSII)	3	16	39	16	43	10	3155	100	69	100
(PsbH);(PsbX)	1	13	36	13	40	31	295	100	56	100
(PsbH);(PSII)	1	15	40	15	42	61	1862	100	70	100
(PsbI);(PSII)	1	15	38	15	42	64	451	100	47	100
(PsbK);(PSII)	1	15	38	15	42	14	815	100	63	100
(PsbK);(Ycf9)	1	15	40	15	42	12	269	100	48	100
(PsbL);(PsbM)	1	14	39	14	41	10	805	100	72	100
(PsbL);(PsbT)	1	15	40	15	42	10	598	100	75	100
(PsbL);(PSII)	1	15	40	15	42	10	592	100	60	100
(PsbM);(PsbT)	1	9	31	11	38	42	213	100	29	82
(PSII);(Ycf9)	1	15	37	15	42	10	434	100	49	100
(Ribosomal_S2);(Ribosomal_S21e)	1	8	8	8	8	32	1464	25	12	100
(Enterotoxin_a);(Enterotoxin_b)	1	6	15	6	15	61	310	100	67	100
(Enterotoxin_a);(Enterotoxin_b)	2	6	15	6	15	61	529	100	67	100
(Ephrin);(Ephrin_lbd)	1	7	7	10	10	29	1124	100	100	70
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	1	14	32	14	32	31	1737	100	88	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	2	12	27	14	32	31	853	100	96	86
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)	1	21	37	25	49	44	942	100	81	84
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	55	89	67	101	12	1524	100	90	82
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	2	12	12	67	101	13	1868	100	83	18
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	10	39	10	39	65	1855	100	95	100
(EF-hand_1)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(IQ)_(IQ)	1	5	7	5	7	32	1636	86	57	100
(EF-hand_7)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(IQ)	1	5	6	7	8	10	1573	100	83	71
(Cohesin);(Dockerin_1)_(Dockerin_1)	1	7	7	12	12	10	902	100	100	58
(Cohesin);(Dockerin_1)_(Dockerin_1)	2	5	5	12	12	20	780	100	100	42
(EF-hand_7)_(EF-hand_7);(PPP5)_(Metallophos)	1	9	13	9	13	59	2168	100	100	100
(CSN8_PSD8_EIF3K);(TPR_19)_(PCI)	1	9	9	11	11	86	305	100	89	82
(JAB);(PPR)_(DUF410)_(PCI)	1	6	6	11	11	84	479	100	67	55
(JAB);(Prot_ATP_ID_OB)_(AAA)	2	5	5	12	12	60	542	100	20	42
(JAB)_(MitMem_reg);(PPR)_(DUF410)_(PCI)	1	8	8	11	11	77	430	100	50	73
(JAB)_(MitMem_reg);(TPR_19)_(PCI)	1	11	11	11	11	77	1471	100	73	100
(Ig_3)_(C1-set);(V-set)_(DUF1968)	1	7	19	7	19	15	2039	100	79	100
(MHC_II_alpha)_(C1-set);(MHC2-interact)	1	5	5	10	11	55	673	100	100	50
(PPR)_(DUF410)_(PCI);(RPN7)_(PCI)	1	11	11	11	11	84	1376	100	64	100
(DUF410)_(PCI);(JAB)_(MitMem_reg)	1	5	5	7	7	43	560	100	40	71
(CSN8_PSD8_EIF3K);(TPR_19)_(PCI)_(Rpn3_C)	1	10	10	10	10	86	2061	100	80	100
(PPTA)_(PPTA)_(PPTA)_(PPTA)_(PPTA);(Prenyltrans)_(Prenyltran s)_(Prenyltrans)_(Prenyltrans)_(Prenyltrans)	1	6	79	6	79	19	3063	94	100	100
(JAB)_(MitMem_reg);(TPR_19)_(PCI)_(Rpn3_C)	1	6	6	10	10	77	697	100	67	60
(Prot_ATP_ID_OB)_(AAA);(TarH)_(Prot_ATP_ID_OB)_(AAA)	1	5	5	5	5	38	3189	100	80	100
(Fimbrial);(PapD_N)_(PapD_C)	1	12	14	12	14	10	1663	100	100	100
(Como_LCP);(Como_SCP)	1	7	8	7	10	38	1721	100	50	100
(IL23);(Izumo-Ig)_(IL12p40_C)_(fn3)	1	5	5	5	5	88	1010	100	100	100
(fn3);(HH_signal)_(Hint)	1	5	6	5	6	78	667	100	17	100
(Serpin);(Trypsin)	1	10	10	14	14	24	1122	100	100	71
(eIF-5_eIF-2B);(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C)	1	8	9	8	9	31	1041	100	56	100
(CRPV_capsid);(Rhv)	1	8	10	9	11	5	897	100	50	89
(CRPV_capsid);(Rhv)	2	5	5	9	11	10	1082	100	20	56
(Rhv);(VP4_2)	1	14	24	16	28	23	593	100	67	88
(Rhv);(VP4_2)	2	12	20	16	28	65	233	100	65	75
(Rhv);(VP4_2)	3	6	9	16	28	16	711	78	56	38
(eIF-1a);(Ribosom_S12_S23)	1	13	13	22	22	20	462	100	23	59
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(zf- RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(R NA_pol_Rpb1_5)	1	11	24	14	43	74	1162	100	75	79
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (zf-RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4 )_(RNA_pol_Rpb1_5)	1	11	24	14	43	74	8592	100	88	79
(eIF-3c_N)_(PCI);(PCI)	1	5	5	5	5	14	1500	100	40	100
(RNA_pol_Rpb6);(zf-RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_ (RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	12	25	14	43	74	2315	100	88	86
(G-alpha);(RGS)	1	10	10	10	10	37	875	100	10	100
(GDI);(Ras)	1	5	6	5	6	20	1161	100	83	100
(CPSase_sm_chain);(Furin-like_2)	1	6	7	6	7	36	1002	100	100	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosoma l_L10)_(Ribosomal_60s)	1	6	6	6	6	54	582	0	0	100
(CytoC_RC);(Photo_RC)	1	7	34	7	37	45	1704	100	97	100
(CytoC_RC);(Photo_RC)	2	7	34	7	37	45	2585	100	100	100
(Photo_RC);(PRCH)_(PRC)	1	12	131	12	135	37	1621	100	97	100
(Photo_RC);(PRCH)_(PRC)	2	12	131	12	135	37	2678	100	98	100
(Cytochrom_C550);(Photo_RC)	1	12	37	12	39	54	565	100	81	100
(Cytochrom_C550);(Photo_RC)	2	6	26	12	39	31	204	100	88	50
(Cytochrom_C550);(PsbU)	1	11	36	11	38	35	636	100	61	100
(Cytochrom_C550);(PSII)	1	13	36	13	40	54	904	100	81	100
(MSP);(PsbU)	1	11	35	11	38	35	518	100	51	100
(PsbK);(PSII_Ycf12)	1	9	32	9	36	10	482	100	59	100
(PsbU);(PSII)	1	11	36	11	38	35	446	100	61	100
(PsbU);(PSII)	2	11	34	11	38	35	438	100	56	100
(PSII_Ycf12);(Ycf9)	1	9	32	9	36	10	395	100	53	100
(Cytochrom_C);(peroxidase)	1	7	21	8	23	37	563	100	29	88
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)	1	67	177	81	208	10	1130	100	9	83
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)	2	11	21	81	208	31	820	100	33	14
(Ribosomal_L31);(Ribosomal_S13)	1	75	169	96	199	10	409	100	18	78
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_ Rpb2_7)	1	6	13	6	13	90	8165	100	100	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_ Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	6	13	6	13	86	268	100	100	100
(Ribosomal_L31);(Ribosomal_S19)	1	66	138	94	183	10	435	100	24	70
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7)	1	11	29	11	29	78	7766	100	90	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_( RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(Sigma70_ r1_1)_(Sigma70_r1_2)_(Sigma70_ner)_(Sigma70_r2)_(Sigma70_r3) _(Sigma70_r4)	1	5	16	6	19	89	1916	100	100	83
(HECT);(ubiquitin)	1	6	6	7	8	51	834	83	83	86
(IGFBP);(Insulin)	1	5	5	5	5	58	820	100	100	100
(IL4Ra_N)_(fn3);(IL6Ra-bind)_(fn3)	1	5	5	5	5	18	882	100	40	100
(Inhibitor_I42);(Peptidase_C1)	1	5	5	6	6	36	1074	100	100	83
(RanGAP1_C);(UQ_con)	1	6	11	6	11	81	569	100	9	100
(DCP1);(DCP2)_(NUDIX)	1	8	9	8	9	19	1121	100	78	100
(Kazal_1);(Trypsin)	1	10	35	10	35	10	639	100	97	100
(Kunitz_legume);(Trypsin)	1	6	7	7	8	32	986	100	100	86
(Tfb2);(Tfb5)	1	5	5	7	7	10	982	100	0	71
(Lys);(V-set)	1	5	23	23	54	79	526	91	22	22
(Lys);(V-set)	2	5	23	23	54	79	382	91	22	22
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	11	11	11	11	33	1130	100	82	100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	2	6	6	11	11	84	224	100	83	55
(HTH_9)_(RNA_pol_Rpc82)_(TFIIE_alpha);(RNA_pol_3_Rpc31)	1	11	11	11	11	66	1483	100	82	100
(RNA_pol_3_Rpc31);(RNA_pol_Rpc34)	1	7	7	11	11	66	502	100	71	64
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	13	13	13	13	30	1694	100	85	100
(RNA_pol_I_A49);(RNA_polI_A34)	1	20	24	20	24	38	2165	100	79	100
(RNA_polI_A14);(SHS2_Rpb7-N)	1	19	23	19	23	84	1625	100	57	100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	1	8	34	8	35	42	1409	100	74	100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	2	7	33	8	35	42	635	100	73	88
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	1	10	31	10	33	16	4541	100	97	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	2	10	31	10	33	51	1305	100	97	100
(DUF5089);(Synaptobrevin)	1	10	15	14	19	10	1094	100	93	71
(DUF5089);(Synaptobrevin)	2	7	8	14	19	10	311	100	100	50
(DUF5089);(Syntaxin)_(SNARE)	1	13	14	13	14	10	1455	100	100	100
(DUF5089);(Syntaxin)_(SNARE)	2	8	9	13	14	19	337	100	89	62
(Synaphin);(Synaptobrevin)	1	6	6	6	6	52	321	100	67	100
(Synaphin);(Syntaxin)_(SNARE)	1	6	6	6	6	10	271	100	67	100
(NHase_alpha);(NHase_beta)	1	8	46	9	56	16	3087	100	100	89
(NHase_alpha);(NHase_beta)	2	5	31	9	56	37	296	16	58	56
(AAA);(Prot_ATP_ID_OB)_(AAA)	1	12	12	12	12	34	3014	100	33	100
(Prot_ATP_ID_OB)_(AAA);(Proteasome_A_N)_(Proteasome)	1	12	12	15	15	36	417	100	58	80
(Prot_ATP_ID_OB)_(AAA);(Proteasome_A_N)_(Proteasome)	2	7	7	15	15	54	391	100	43	47
(Prot_ATP_ID_OB)_(AAA);(Proteasome_A_N)_(Proteasome)	3	5	5	15	15	16	350	100	40	33
(AAA_16)_(ORC4_C);(AAA_16)_(ORC5_C)	1	5	5	5	5	16	2675	100	80	100
(ORC2);(ORC3_N)	1	5	5	5	5	12	1929	100	80	100
(AAA_21);(AAA_23)	1	7	9	7	9	16	2862	100	100	100
(OTCace_N)_(OTCace);(PyrI)_(PyrI_C)	1	7	62	7	63	32	677	100	98	100
(Pacifastin_I);(Trypsin)	1	7	7	7	7	10	903	100	100	100
(EF-hand_7)_(EF-hand_7);(Myosin_head)_(IQ)	1	5	5	5	5	52	1049	100	40	100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)	1	91	105	91	105	8	492	30	7	100
(KH_2)_(Ribosomal_S3_C);(S10_plectin)	1	91	105	91	105	3	885	31	8	100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)	1	39	53	39	53	10	480	19	8	100
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)	1	102	116	102	116	7	465	33	11	100
(Ribosom_S12_S23);(Ribosomal_S30)	1	81	95	82	96	10	479	35	9	99
(Ribosomal_L16);(Ribosomal_L21e)	1	42	55	47	61	10	215	25	13	89
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	71	85	76	90	10	262	26	7	93
(Ribosomal_L24e);(Ribosomal_S6e)	1	40	54	43	57	10	809	15	4	93
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)	1	43	57	43	57	35	665	26	9	100
(Ribosomal_L7Ae);(Ribosomal_S27)	1	34	48	38	52	10	509	25	10	89
(Ribosomal_L7Ae);(S10_plectin)	1	16	16	20	20	31	288	19	0	80
(Ribosomal_S11);(Ribosomal_S26e)	1	94	108	94	108	10	1106	31	8	100
(Ribosomal_S13);(Ribosomal_S19e)	1	95	109	100	114	2	440	33	10	95
(Ribosomal_S13);(Ribosomal_S25)	1	86	100	91	105	10	468	33	9	95
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)	1	101	115	103	117	8	716	35	10	98
(Ribosomal_S14);(S10_plectin)	1	88	102	90	104	10	288	31	7	98
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	1	79	93	86	100	10	1006	27	9	92
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	43	57	43	57	10	538	21	9	100
(Ribosomal_S19e);(Ribosomal_S9)	1	52	52	58	58	3	298	33	12	90
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)	1	88	102	88	102	10	1524	28	9	100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	88	102	88	102	10	544	28	9	100
(Ribosomal_S21e);(Ribosomal_S27e)	1	49	63	49	63	39	437	30	10	100
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)	1	96	110	96	110	10	1325	33	10	100
(Ribosomal_S21e);(Ribosomal_S8)	1	83	97	84	98	10	279	33	10	99
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	1	94	108	99	113	5	541	33	10	95
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	2	5	5	99	113	31	550	40	0	5
(Ribosomal_S25);(Ribosomal_S7)	1	88	102	95	109	5	609	33	10	93
(Ribosomal_S26e);(Ribosomal_S28e)	1	8	8	13	13	43	231	38	12	62
(Ribosomal_S26e);(Ribosomal_S3Ae)	1	76	90	82	96	10	271	32	7	93
(Ribosomal_S27e);(Ribosomal_S7e)	1	35	35	37	37	31	365	31	9	95
(Ribosomal_S27e);(Ribosomal_S8)	1	100	114	100	114	10	487	34	10	100
(Ribosomal_S30);(Ribosomal_S4)_(S4)	1	57	71	57	71	5	506	30	10	100
(Ribosomal_S4)_(S4);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_ S4_C)	1	50	64	50	64	10	387	25	11	100
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )	1	91	105	91	105	5	314	31	10	100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)	1	43	57	45	59	36	314	21	7	96
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)	1	42	42	50	50	35	632	43	17	84
(EGF);(Recep_L_domain)_(Furin-like)_(Recep_L_domain)_(GF_rec ep_IV)	1	8	9	8	9	29	1430	100	100	100
(eIF_4EBP);(IF4E)	1	9	12	12	20	0	1000	100	100	75
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	37	37	41	41	10	494	43	11	90
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)	1	44	44	47	47	10	586	41	5	94
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	45	45	45	45	10	548	44	9	100
(Ribosomal_S24e);(S4)	1	11	11	12	12	10	228	73	18	92
(Ribosomal_S30);(S4)	1	24	24	24	24	10	489	50	12	100
(Ribosomal_S5)_(Ribosomal_S5_C);(S4)	1	40	40	43	43	10	375	40	8	93
(Ribosomal_S7);(S1)_(EIF_2_alpha)	1	5	5	5	5	57	663	100	20	100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	41	41	41	41	10	289	49	10	100
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)	1	40	40	40	40	10	353	40	8	100
(Ribosom_S12_S23);(ubiquitin)_(Ribosomal_S30)	1	16	16	16	16	55	405	25	0	100
(S4);(ubiquitin)_(Ribosomal_S30)	1	16	16	16	16	55	524	25	0	100
(Ribosomal_L23);(Ribosomal_L39)	1	7	67	7	67	49	276	99	1	100
(Ribosomal_L10)_(Ribosomal_60s);(Ribosomal_L11_N)_(Ribosomal _L11)	1	8	8	8	8	46	267	12	0	100
(Ribosomal_L28);(Ribosomal_L9_N)	1	7	7	10	10	10	293	100	0	70
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_8)	1	6	17	6	17	26	2678	100	100	100
(Peptidase_C48);(Rad60-SLD)	1	10	14	10	14	15	1026	100	86	100
(Peptidase_M10);(TIMP)	1	8	9	8	9	42	1075	100	89	100
(Peptidase_S8);(potato_inhibit)	1	11	29	11	29	32	835	100	100	100
(PsaA_PsaB);(PsaM)	1	7	9	7	9	34	953	100	44	100
(FGF);(Ig_3)_(I-set)	1	9	10	9	10	21	1411	100	100	100
(Nop);(Ribosomal_L7Ae)	1	6	7	6	7	26	543	100	86	100
(Filo_glycop);(TLV_coat)	1	9	11	9	11	34	2357	91	73	100
(Filo_glycop);(TLV_coat)	2	9	11	9	11	34	459	55	64	100
(Filo_glycop);(TLV_coat)	3	9	11	9	11	34	397	55	64	100
(Ig_3)_(C1-set);(V-set)_(C1-set)	1	22	29	22	29	19	1692	100	93	100
(Ras);(RBD-FIP)	1	5	6	7	9	35	668	100	83	71
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	1	20	20	21	21	24	865	100	10	95
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	2	10	10	21	21	24	820	100	10	48
(TFIIF_alpha);(TFIIF_beta)	1	11	11	15	15	16	2113	100	9	73
(Flu_PA);(Flu_PB1)	1	13	15	13	15	10	7638	100	93	100
(Flu_PA);(Flu_PB2)	1	9	11	11	13	35	1960	100	91	82
(Flu_PB1);(Flu_PB2)	1	8	10	11	14	40	5704	80	80	73
(ACR_tran);(AcrZ)	1	5	5	5	5	10	1230	80	80	100
(Plexin_cytopl);(Ras)	1	5	5	6	6	49	676	100	100	83
(FXa_inhibition);(Trypsin)	1	18	152	18	179	35	908	96	99	100
(EF-hand_6)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(IQ)_(IQ)	1	12	12	14	15	40	1540	100	8	86
(ecTbetaR2);(TGF_beta)	1	5	5	6	6	59	486	80	60	83
(Ras);(Rho_GDI)	1	7	7	7	7	53	1312	100	100	100
(AMPK1_CBM)_(AMPKBI);(CBS)_(CBS)_(CBS)_(CBS)	1	6	13	6	13	30	1148	92	92	100
(GP120);(V-set)_(C1-set)	1	34	61	115	174	10	914	98	61	30
(GP120);(V-set)_(C1-set)	2	19	35	115	174	33	262	100	69	17
(GP120);(V-set)_(C1-set)	3	10	25	115	174	58	242	0	4	9
(GP120);(V-set)_(C1-set)	4	10	25	115	174	50	525	96	24	9
(GP120);(V-set)_(C1-set)	5	8	17	115	174	56	305	100	12	7
(GP120);(V-set)_(C1-set)	6	7	15	115	174	56	289	100	13	6
(GP120);(V-set)_(C1-set)	7	7	9	115	174	57	672	100	33	6
(GP120);(V-set)_(C1-set)	8	6	6	115	174	10	388	100	83	5
(GP120);(V-set)_(C1-set)	9	6	6	115	174	36	374	100	100	5
(GDNF)_(GDNF);(TGF_beta)	1	5	5	5	5	23	776	100	100	100
(Sec1);(Vps16_C)	1	5	5	5	5	28	2079	100	80	100
(Squash);(Trypsin)	1	7	10	7	10	40	812	100	100	100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)	1	5	9	5	9	43	626	100	44	100
(GP120);(GP41)	1	21	32	21	32	71	2451	97	59	100
(GP120);(GP41)	2	9	17	21	32	71	209	76	18	43
(GP41);(V-set)_(C1-set)	1	7	17	41	81	75	359	100	41	17
(GP41);(V-set)_(C1-set)	2	5	7	41	81	10	691	100	100	12
(GP120);(ig)_(C2-set)_(CD4-extracel)	1	15	27	15	27	23	1047	100	59	100
(Cyclin_N)_(Cyclin_N);(Pkinase)	1	8	43	8	44	11	1308	100	98	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosom_ S12_S23)	1	18	18	22	24	10	352	50	0	82
(Ribosom_S12_S23);(RRF)	1	5	7	5	7	10	454	100	0	100
(ubiquitin);(zf-A20)	1	5	7	7	10	30	385	57	0	71
(Pico_P1A)_(Rhv);(Rhv)	1	10	15	11	17	15	1687	100	13	91
(Pico_P1A)_(Rhv);(Rhv)	2	7	12	11	17	10	1173	100	8	64
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)	1	13	13	15	15	19	1710	100	69	87
(Hemagglutinin);(V-set)_(C1-set)	1	5	6	60	69	55	584	100	33	8
(Hemagglutinin);(V-set)_(C1-set)	2	5	6	60	69	35	276	100	33	8
(Hemagglutinin);(V-set)_(C1-set)	3	5	5	60	69	45	524	100	80	8
(A2M_N)_(A2M_N_2);(A2M_recep)_(NTR)	1	6	9	6	9	20	716	100	100	100
(Histone);(PHD)_(PHD)	1	6	11	8	14	10	937	100	82	75
(Plug_translocon)_(SecY);(SecE)	1	18	20	20	22	17	1610	85	55	90
(Hormone_recep);(SRC-1)	1	10	17	55	228	10	676	100	100	18
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	1	7	14	7	14	45	2288	100	79	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	2	7	14	7	14	45	1500	100	79	100
(Aurora-A_bind);(Pkinase)	1	5	5	5	5	12	1213	100	100	100
(Bcl-2);(BID)	1	6	9	6	9	10	910	100	78	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	1	7	40	7	42	26	1736	100	100	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	2	7	40	7	42	26	1582	100	100	100
(EGF)_(FXa_inhibition);(Trypsin)	1	8	14	8	14	38	888	100	100	100
(Ribosomal_S17e);(Ribosomal_S2)	1	8	8	8	8	47	1274	25	12	100
(RGM_N);(TGF_beta)	1	5	5	5	5	44	512	80	80	100
(RGM_N);(TGF_beta)	2	5	5	5	5	44	421	80	80	100
(Kunitz_BPTI);(Trypsin)	1	36	90	37	91	16	677	100	99	97
(Kunitz_BPTI);(Trypsin)	2	5	13	37	91	40	312	0	8	14
(Plug_translocon)_(SecY);(Sec61_beta)	1	7	9	17	19	89	1332	67	56	41
(PCRF)_(RF-1);(Ribosomal_L11_N)_(Ribosomal_L11)	1	7	8	8	10	42	286	100	25	88
(Spc24);(Spindle_Spc25)	1	8	8	8	8	10	1310	100	88	100
(Rad60-SLD);(UQ_con)	1	7	7	12	13	18	568	71	14	58
(Rad60-SLD);(UQ_con)	2	5	6	12	13	47	586	100	83	42
(MazE_antitoxin);(PIN)	1	5	5	5	5	18	1289	100	100	100
(Med26)_(TFIIS_M)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2 )_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_po l_Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	7	7	7	7	31	2368	100	0	100
(Gla)_(EGF)_(FXa_inhibition);(Trypsin)	1	12	91	12	93	37	896	96	98	100
(Ras);(RhoGAP)	1	7	7	7	7	53	1099	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_beta_N)_(MCR_beta)	1	9	23	9	23	10	1214	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_beta_N)_(MCR_beta)	2	9	23	9	23	47	2204	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_gamma)	1	9	23	9	23	47	608	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_gamma)	2	9	23	9	23	47	2447	100	100	100
(MCR_beta_N)_(MCR_beta);(MCR_gamma)	1	9	23	9	23	47	2596	100	100	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	1	10	15	10	17	10	504	100	80	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	2	10	15	10	17	10	654	100	80	100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	1	113	158	115	161	10	2632	100	99	98
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	2	20	22	115	161	21	379	14	14	17
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	3	10	11	115	161	23	325	0	0	9
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	4	6	7	115	161	53	294	14	14	5
(DUF3585);(Ras)	1	5	5	5	5	42	913	100	80	100
(CBS)_(CBS)_(CBS)_(CBS);(Pkinase)_(UBA_2)_(AdenylateSensor)	1	5	12	5	12	79	975	92	92	100
(CBS)_(CBS)_(CBS)_(CBS);(Pkinase)_(UBA_2)_(AdenylateSensor)	2	5	12	5	12	10	449	0	0	100
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	1	22	64	23	85	10	3624	100	100	96
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	2	7	21	23	85	21	837	90	100	30
(CBFD_NFYB_HMF);(Histone)	1	45	164	45	177	14	2446	100	97	100
(CBFD_NFYB_HMF);(Histone)	2	19	90	45	177	10	496	98	96	42
(CBFD_NFYB_HMF);(Histone)	3	19	94	45	177	76	270	98	94	42
(CBFD_NFYB_HMF);(Histone)	4	7	63	45	177	15	252	0	3	16
(PALP);(Trp_syntA)	1	6	67	7	101	24	1330	100	97	86
(Med11);(Med17)	1	9	9	11	11	10	1186	100	33	82
(Med11);(Med18)	1	6	6	6	6	11	369	100	33	100
(Med11);(Med22)	1	8	8	8	8	10	1620	100	38	100
(Med17);(Med22)	1	6	6	11	11	10	693	100	17	55
(Med17);(Med6)	1	10	10	10	10	10	740	100	20	100
(PBD);(Ras)	1	6	7	6	8	16	1127	100	71	100
(Pentapeptide_4);(Toxin_R_bind_N)_(Toxin_R_bind_C)	1	5	5	5	5	75	574	100	40	100
(SecE);(SecY)	1	6	7	13	14	10	1843	86	86	46
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)	1	11	24	28	42	10	813	100	100	39
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)	1	14	27	19	32	10	649	100	89	74
(PI3K_p85B)_(PI3K_rbd)_(PI3K_C2)_(PI3Ka)_(PI3_PI4_kinase);(S H2)_(PI3K_P85_iSH2)	1	5	35	5	43	10	3294	100	100	100
(PKI);(Pkinase)	1	13	140	16	213	77	982	95	96	81
(PKI);(Pkinase)	2	10	145	16	213	0	388	0	0	62
(Polyketide_cyc2);(PP2C)	1	13	27	14	29	10	867	96	100	93
(Med18);(Med20)	1	8	8	10	10	80	1518	100	50	80
(CBFD_NFYB_HMF);(Histone)_(Histone_H2A_C)	1	25	140	26	150	12	423	99	96	96
(CBFD_NFYB_HMF);(Histone)_(Histone_H2A_C)	2	8	48	26	150	62	2507	100	98	31
(CBFD_NFYB_HMF);(Histone)_(Histone_H2A_C)	3	5	53	26	150	15	238	0	0	19
(RAG1_imp_bd)_(zf-C3HC4)_(zf-RAG1)_(RAG1);(RAG2)_(RAG2_PHD)	1	5	5	5	5	51	589	100	0	100
(RAG1_imp_bd)_(zf-C3HC4)_(zf-RAG1)_(RAG1);(RAG2)_(RAG2_PHD)	2	5	5	5	5	51	1889	100	0	100
(Ras);(RasGEF_N)_(RasGEF)	1	5	20	7	22	16	1622	100	100	71
(Rhv);(Rhv)_(Rhv)	1	5	13	9	17	50	961	100	85	56
(Ricin_B_lectin)_(Ricin_B_lectin);(RIP)	1	10	39	10	39	28	1546	100	95	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	1	13	47	13	50	26	1769	100	96	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	2	13	47	13	50	26	460	98	89	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	3	13	47	13	50	26	863	98	91	100
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)	1	19	146	20	183	43	2584	100	99	95
(Bowman-Birk_leg)_(Bowman-Birk_leg);(Trypsin)	1	5	7	6	8	41	588	100	71	83
(Bowman-Birk_leg)_(Bowman-Birk_leg);(Trypsin)	2	5	6	6	8	56	706	83	33	83
(C1-set);(MHC_I)_(Ig_3)	1	273	535	274	560	22	1284	99	97	100
(C1-set);(MHC_I)_(Ig_3)	2	33	84	274	560	83	259	0	0	12
(C1-set);(MHC_I)_(Ig_3)	3	21	38	274	560	72	342	3	11	8
(C1-set);(MHC_I)_(Ig_3)	4	21	38	274	560	72	334	3	0	8
(C1-set);(MHC_I)_(Ig_3)	5	20	63	274	560	19	261	0	2	7
(C1-set);(MHC_I)_(Ig_3)	6	20	28	274	560	41	267	0	11	7
(C1-set);(MHC_I)_(Ig_3)	8	13	64	274	560	84	215	2	0	5
(C1-set);(MHC_I)_(Ig_3)	9	13	20	274	560	86	339	0	0	5
(C1-set);(MHC_I)_(Ig_3)	10	11	37	274	560	83	511	0	5	4
(C1-set);(MHC_I)_(Ig_3)	11	11	37	274	560	69	224	0	0	4
(C1-set);(MHC_I)_(Ig_3)	12	8	13	274	560	69	238	0	0	3
(C1-set);(MHC_I)_(Ig_3)	14	7	10	274	560	82	436	0	0	3
(C1-set);(MHC_I)_(Ig_3)	15	6	8	274	560	26	309	38	50	2
(MHC_I)_(Ig_3);(V-set)_(C1-set)	1	39	61	56	85	53	414	100	49	70
(MHC_I)_(Ig_3);(V-set)_(C1-set)	2	8	18	56	85	10	265	0	0	14
(ubiquitin);(Viral_protease)	1	7	10	8	12	29	1019	100	100	88
(C1-set);(MHC_I)_(C2-set_2)	1	15	21	15	21	75	1292	100	100	100
(DUF331);(PCRF)_(RF-1)	1	7	7	7	7	42	1055	100	29	100
(DUF331);(Ribosom_S12_S23)	1	8	8	10	10	10	409	100	25	80
(T6SS_VipA);(VipB)	1	8	8	8	8	24	2803	100	50	100
(T6SS_VipA);(VipB)	2	5	5	8	8	30	718	100	60	62
(C1-set);(MHC_I)_(C1-set)	1	140	226	145	242	10	1259	100	98	97
(C1-set);(MHC_I)_(C1-set)	2	12	14	145	242	66	273	7	7	8
(C1-set);(MHC_I)_(C1-set)	3	9	39	145	242	89	210	0	0	6
(C1-set);(MHC_I)_(C1-set)	5	6	8	145	242	69	275	0	25	4
(C1-set);(MHC_I)_(C1-set)	6	6	8	145	242	65	398	0	0	4
(C1-set);(MHC_I)_(C1-set)	7	6	6	145	242	76	262	0	0	4
(C1-set);(MHC_I)_(C1-set)	8	6	6	145	242	85	572	0	0	4
(C1-set);(MHC_I)_(C1-set)	9	5	7	145	242	84	252	0	0	3
(C1-set);(MHC_I)_(C1-set)	10	5	6	145	242	69	219	0	0	3
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	15	17	15	17	34	2424	100	65	100
(Complex1_30kDa);(Complex1_49kDa)	1	15	17	15	17	28	2626	100	65	100
(Complex1_30kDa);(Oxidored_q6)	2	7	9	16	18	28	392	100	78	44
(Complex1_49kDa);(Fer4_7)	1	11	13	11	13	34	1377	100	54	100
(Complex1_49kDa);(Oxidored_q6)	1	16	18	16	18	3	1255	100	61	100
(COX1);(COX2_TM)_(COX2)	1	16	62	16	65	33	3546	100	87	100
(COX1);(COX3)	1	14	51	14	54	19	2535	100	86	100
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)	1	29	67	30	81	10	1601	100	87	97
(Cytochrom_C1);(UCR_14kD)	1	23	56	26	72	34	399	100	91	88
(Cytochrom_C1);(UCR_hinge)	1	27	60	27	73	30	1082	100	85	100
(Cytochrom_C1);(UCR_TM)_(Rieske)	1	15	44	19	65	51	791	100	91	79
(Cytochrom_C1);(UCR_UQCRX_QCR9)	1	24	57	27	73	32	841	100	89	89
(Cytochrom_C1);(UcrQ)	1	27	61	27	73	21	726	100	84	100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)	1	22	55	26	72	26	401	100	91	85
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)	1	27	61	27	73	34	1193	100	84	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	1	15	45	19	65	49	496	100	89	79
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	2	12	34	19	65	49	896	91	88	63
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)	1	27	60	27	73	21	990	100	85	100
(Fer4_7);(Oxidored_q6)	1	12	14	12	14	10	1288	100	50	100
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	1	9	24	17	56	43	1604	100	92	53
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	2	9	24	17	56	43	776	100	92	53
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	3	8	18	17	56	86	1256	100	67	47
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	4	8	19	17	56	86	1796	100	68	47
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)	1	18	39	26	72	10	399	87	87	69
(Peptidase_M16)_(Peptidase_M16_C);(UCR_6-4kD)	1	8	19	11	32	84	345	100	79	73
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)	1	16	40	19	65	71	932	100	80	84
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)	1	14	32	18	46	26	260	100	88	78
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)	1	27	61	27	73	21	825	100	84	100
(UCR_14kD);(UcrQ)	1	23	56	26	72	21	464	100	91	88
(UCR_6-4kD);(UCR_UQCRX_QCR9)	1	10	22	13	34	79	571	100	73	77
(UCR_hinge);(UcrQ)	1	9	31	18	58	62	296	100	90	50
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)	1	18	48	19	65	32	644	100	83	95
(UCR_TM)_(Rieske);(UcrQ)	1	13	37	19	65	62	593	100	86	68
(NADHdh);(Oxidored_q3)	1	13	13	13	13	14	1019	100	54	100
(NADHdh);(Oxidored_q4)	1	11	11	13	13	74	2706	100	45	85
(Oxidored_q2);(Oxidored_q3)	1	11	11	15	15	57	2705	100	45	73
(Oxidored_q2);(Oxidored_q4)	1	12	12	14	14	19	404	100	50	86
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	12	12	12	12	32	531	100	50	100
(Oxidored_q3);(Oxidored_q4)	1	11	11	13	13	57	1783	100	45	85
(CI-B14_5a);(Complex1_49kDa)	1	5	5	5	5	89	1527	100	0	100
(CI-B14_5a);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	5	5	5	5	89	219	100	0	100
(CI-B14_5a);(NDUFA12)	1	6	6	6	6	87	428	100	33	100
(Complex1_30kDa);(ETC_C1_NDUFA5)	1	8	8	10	10	88	1320	100	50	80
(Complex1_49kDa);(ETC_C1_NDUFA5)	1	8	8	8	8	88	331	100	50	100
(Complex1_49kDa);(GRIM-19)	1	8	8	8	8	42	869	100	50	100
(Complex1_49kDa);(NADHdh)	1	8	8	10	10	40	1149	100	62	80
(Complex1_49kDa);(Oxidored_q4)	1	7	7	7	7	74	416	100	57	100
(Complex1_49kDa);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	7	7	7	7	63	760	100	57	100
(Complex1_LYR);(NDUF_B4)	1	8	8	8	8	61	1039	100	50	100
(Complex1_LYR);(NDUF_B5)	1	7	7	9	9	70	442	100	43	78
(Complex1_LYR);(Oxidored_q5_N)_(Proton_antipo_M)	1	7	7	8	8	70	300	100	43	88
(Complex1_LYR);(PP-binding)	1	9	9	15	16	6	532	100	44	60
(Complex1_LYR);(PP-binding)	2	8	8	15	16	70	791	100	50	53
(Complex1_LYR);(PP-binding)	3	5	6	15	16	40	525	100	83	33
(Complex1_LYR);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	8	8	8	8	69	1313	100	50	100
(dNK);(NADH_dh_m_C1)	1	5	5	5	5	81	397	100	20	100
(dNK);(NDUF_C2)	1	5	5	5	5	60	321	100	20	100
(dNK);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	5	5	7	7	63	1708	100	20	71
(ESSS);(NDUF_B5)	1	6	6	10	10	32	861	100	83	60
(ESSS);(NDUFB10)	1	9	9	9	9	31	1372	100	44	100
(ESSS);(Oxidored_q5_N)_(Proton_antipo_M)	1	9	9	9	9	72	1558	100	56	100
(FeS)_(Fer4_7);(GRIM-19)	1	5	5	5	5	80	302	100	100	100
(FeS)_(Fer4_7);(NADHdh_A3)	1	5	5	5	5	55	303	100	100	100
(FeS)_(Fer4_7);(zf-CHCC)	1	5	5	5	5	38	942	100	100	100
(GRIM-19);(MWFE)	1	8	8	10	10	42	529	100	50	80
(GRIM-19);(NADHdh)	1	8	8	11	11	42	909	100	50	73
(GRIM-19);(NADHdh_A3)	1	8	8	8	8	42	499	100	50	100
(GRIM-19);(Ndufs5)	1	7	7	9	9	42	1179	100	43	78
(GRIM-19);(Oxidored_q3)	1	8	8	10	10	42	635	100	50	80
(MWFE);(NADHdh)	1	11	11	11	11	79	1464	100	45	100
(NADH_dh_m_C1);(NDUF_C2)	1	9	9	11	11	45	754	100	56	82
(NADH_oxidored);(NDUF_B5)	1	8	8	10	10	84	477	100	38	80
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)	1	10	10	10	10	72	777	100	50	100
(NADHdh);(NADHdh_A3)	1	11	11	11	11	43	656	100	45	100
(NADHdh);(Oxidored_q6)	1	9	9	11	11	40	1275	100	67	82
(NADHdh_A3);(Oxidored_q4)	1	10	10	10	10	43	350	100	50	100
(NDUF_B4);(NDUFB10)	1	8	8	10	10	31	315	100	50	80
(NDUF_B4);(Oxidored_q5_N)_(Proton_antipo_M)	1	10	10	10	10	61	1316	100	50	100
(NDUF_B4);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	10	10	10	10	61	847	100	50	100
(NDUF_B5);(NDUF_C2)	1	8	8	10	10	45	669	100	38	80
(NDUF_B5);(NDUFB10)	1	7	7	9	9	31	923	100	43	78
(NDUF_B5);(Ndufs5)	1	8	8	10	10	75	850	100	38	80
(NDUF_B5);(Oxidored_q5_N)_(Proton_antipo_M)	1	9	9	11	11	72	1022	100	33	82
(NDUF_B5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	7	7	10	10	63	230	100	29	70
(NDUF_B7);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	9	9	10	10	69	632	100	44	90
(NDUF_C2);(NDUFB10)	1	8	8	10	10	31	550	100	50	80
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	11	11	11	11	45	995	100	45	100
(NDUFA12);(Oxidored_q6)	1	9	9	9	9	86	293	100	56	100
(NDUFA12);(zf-CHCC)	1	6	6	6	6	87	611	100	33	100
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)	1	8	8	11	11	31	633	100	50	73
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	8	8	11	11	31	985	100	50	73
(Ndufs5);(Oxidored_q2)	1	11	11	11	11	74	459	100	45	100
(Ndufs5);(Oxidored_q3)	1	10	10	10	10	57	713	100	50	100
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	10	10	10	10	63	791	100	50	100
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	11	11	11	11	63	1615	100	45	100
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	11	11	11	11	57	632	100	45	100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)	1	11	11	11	11	63	1189	100	45	100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_N)_(Proton_ antipo_M)_(NADH5_C)	1	12	12	12	12	25	2282	100	50	100
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)	1	10	10	10	10	63	902	100	40	100
(CI-B14_5a);(Fer4_7)	1	5	5	5	5	89	1035	100	0	100
(Oxidored_q5_N)_(Proton_antipo_M);(Tim17)	1	9	9	9	9	72	227	100	44	100
(Proton_antipo_M)_(NADH_dehy_S2_C);(Tim17)	1	9	9	9	9	63	507	100	44	100
(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C);(Tim17)	1	9	9	9	9	69	506	100	44	100
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)	1	96	110	98	112	10	661	34	10	98
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	1	95	109	97	111	3	512	33	10	98
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	2	85	99	97	111	10	279	32	10	88
(Ribosomal_L15e);(Ribosomal_L36e)	1	98	112	98	112	10	530	36	11	100
(Ribosomal_L18);(Ribosomal_L28e)	1	42	42	42	42	10	231	33	2	100
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)	1	81	95	91	105	10	261	33	9	89
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)	1	97	111	100	114	1	463	35	11	97
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	95	109	95	109	7	593	34	10	100
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)	1	83	97	88	102	10	223	35	10	94
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)	1	88	102	88	102	7	372	32	10	100
(Ribosomal_L27A);(Ribosomal_L36e)	1	77	91	80	94	10	232	31	9	96
(Ribosomal_L28e);(Ribosomal_L32e)	1	41	41	46	46	10	768	37	0	89
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	28	28	29	29	10	532	29	0	97
(Ribosomal_L32e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	28	28	29	29	83	226	29	0	97
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	23	23	33	33	10	857	30	0	70
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)	2	10	10	33	33	42	905	30	0	30
(Ribosomal_L36e);(Ribosomal_L7Ae)	1	96	110	96	110	9	308	35	11	100
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)	1	16	16	23	23	70	220	31	19	70
(DSS1_SEM1);(TPR_2)_(PCI)_(Rpn3_C)	1	5	5	8	8	89	975	100	0	62
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)	1	54	68	54	68	36	491	34	16	100
(Ribosomal_L13e);(Ribosomal_L15e)	1	97	111	97	111	10	513	35	11	100
(Ribosomal_L13e);(Ribosomal_L18)	1	74	88	78	92	10	234	31	10	95
(Ribosomal_L13e);(Ribosomal_L27A)	1	97	111	97	111	10	1471	35	10	100
(Ribosomal_L13e);(Ribosomal_L29)	1	102	116	102	116	3	892	40	10	100
(Ribosomal_L13e);(Ribosomal_L36e)	1	93	107	93	107	10	645	33	10	100
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	50	50	53	53	10	227	34	8	94
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	95	109	97	111	5	269	36	11	98
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	99	113	101	115	10	1116	36	11	98
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	49	63	52	66	37	238	35	16	94
(Ribosomal_L22)_(Ribosomal_L22);(Ribosomal_L6e)	1	5	5	6	6	82	278	0	0	83
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)	1	23	23	27	27	47	222	30	9	85
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)	1	95	109	95	109	10	1047	35	11	100
(Ribosomal_L32e);(Ribosomal_L6e)	1	47	61	47	61	78	528	30	16	100
(Ribosomal_L35Ae);(Ribosomal_L6e)	1	57	71	57	71	39	858	37	15	100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	13	13	13	13	26	1606	100	23	100
(MHC_I)_(Ig_3);(V-set)_(C1-set)	3	8	12	56	85	59	365	92	17	14
(MHC_I)_(Ig_3);(V-set)_(DUF1968)	1	43	73	58	94	37	419	100	56	74
(MHC_I)_(Ig_3);(V-set)_(DUF1968)	2	6	8	58	94	52	335	100	12	10
(C1-set);(MHC_I_3)_(Ig_3)	1	23	36	23	36	23	1237	100	97	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(Sig ma70_r1_1)_(Sigma70_r1_2)_(Sigma70_ner)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)	1	5	12	6	18	10	340	100	100	83
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	14	31	16	34	78	2757	100	84	88
(Colicin_Pyocin);(HNH)	1	6	21	6	21	58	763	95	62	100
(Ribosomal_L18);(Ribosomal_L29e)	1	5	5	5	5	41	496	60	0	100
(Ribosomal_L21e);(Ribosomal_L29e)	1	92	106	92	106	10	475	31	8	100
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	9	9	9	9	10	480	11	0	100
(ECR1_N)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	10	10	10	10	84	894	100	80	100
(DUF5323);(Ribosomal_L20)	1	6	6	6	6	10	223	100	50	100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	20	34	24	38	75	802	18	6	83
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	20	34	24	38	75	567	18	6	83
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	1	8	21	21	35	86	262	0	0	38
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	2	5	5	21	35	77	262	0	0	24
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)	1	20	34	24	38	75	529	18	6	83
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)	1	20	34	24	38	75	418	18	6	83
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	19	32	24	38	75	257	16	6	79
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	2	5	5	24	38	75	250	40	0	21
(S10_plectin);(Stm1_N)_(HABP4_PAI-RBP1)	1	5	7	8	10	82	205	14	14	62
(Ribosomal_L28e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	41	41	43	43	10	930	32	0	95
(Ribosomal_L4)_(Ribos_L4_asso_C);(Ribosomal_L6e_N)_(Ribosoma l_L6e)	1	27	27	28	28	10	351	30	0	96
(MHC_II_alpha)_(C1-set);(Stap_Strp_toxin)_(Stap_Strp_tox_C)	1	9	18	12	21	29	680	100	0	75
(KOW)_(Ribosomal_L14e);(KOW)_(Ribosomal_L6e)	1	6	6	9	9	27	525	67	17	67
(KOW)_(Ribosomal_L6e);(Ribosomal_L35Ae)	1	6	6	9	9	34	913	67	17	67
(Ribosomal_L23eN)_(Ribosomal_L23);(SecE)	1	5	5	7	7	65	232	100	20	71
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)	1	5	5	5	5	67	510	20	0	100
(Ribosomal_S13);(Stm1_N)	1	5	5	5	5	67	450	20	0	100
(Ribosomal_S19);(Stm1_N)	1	5	5	5	5	67	434	20	0	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)	1	14	20	14	20	84	902	100	90	100
(RbpA);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	7	7	7	7	81	1268	100	43	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)	1	8	17	8	17	36	2670	100	100	100
(CHCH);(NADHdh_A3)	1	5	5	5	5	43	1063	100	20	100
(CHCH);(NDUF_C2)	1	5	5	5	5	60	680	100	20	100
(CHCH);(Ndufs5)	1	5	5	5	5	74	478	100	20	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(NDUFA12)	1	5	5	5	5	87	563	100	20	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(zf-CHCC)	1	5	5	5	5	89	442	100	20	100
(Brix);(Ebp2)	1	7	7	7	7	89	1759	100	43	100
(Ost4);(STT3)	1	5	5	5	5	35	1578	100	20	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_5);(RNA_pol_Rpb6)	1	6	6	11	11	80	1991	100	33	55
(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	5	5	5	5	86	459	100	0	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _5)	1	6	6	6	6	11	981	100	33	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4 )	1	6	6	6	6	81	2217	100	33	100
(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol _Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	5	5	5	5	80	237	100	20	100
(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol _Rpb2_6)_(RNA_pol_Rpb2_7);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma 70_r3)_(Sigma70_r4)	1	5	5	5	5	81	1722	100	20	100