Protein Common Interface Database

Clusters with M>=5,SeqId<90 and pair Pfam Architecture

Pfam Architecture	Cluster#	#CFs/Cluster	#Entries/Cluster	#CFs/Group	#Entries/Group	Minimum Seq Identity	Surface Area	In PDBBA(%)	In PISABA(%)	CFs Cluster/Group(%)
(CSN8_PSD8_EIF3K);(TPR_16)_(PCI)_(Rpn3_C)	1	7	7	7	7	86	2139	100	57	100
(CSN8_PSD8_EIF3K);(TPR_19)_(PCI)	1	5	5	7	7	86	271	100	80	71
(HAT)_(DUF410)_(PCI);(JAB)_(MitMem_reg)	1	6	6	6	6	77	430	100	67	100
(HAT)_(DUF410)_(PCI);(RPN7)_(PCI)	1	6	6	6	6	84	1320	100	67	100
(JAB)_(MitMem_reg);(TPR_16)_(PCI)_(Rpn3_C)	1	7	7	7	7	77	731	100	57	100
(JAB)_(MitMem_reg);(TPR_19)_(PCI)	1	6	6	6	6	77	1264	100	67	100
(JAB)_(MitMem_reg);(VWA_2)_(UIM)	1	6	6	6	6	77	663	100	67	100
(AAA);(Prot_ATP_ID_OB)_(AAA)	1	5	5	5	5	41	2433	100	80	100
(AAA_21);(AAA_23)	1	6	7	6	7	5	2722	100	100	100
(ABC_tran);(CbiQ)	1	5	5	5	5	47	1334	100	100	100
(ABC_tran)_(TOBE_2);(BPD_transp_1)	1	6	16	6	16	12	821	100	94	100
(IL23);(V-set)_(IL12p40_C)_(fn3)	1	6	6	6	6	0	1008	100	100	100
(EF-hand_6)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(IQ)_(IQ)	1	12	12	14	15	40	1540	100	8	86
(EF-hand_8)_(EF-hand_7);(Troponin)	1	6	7	6	7	44	1893	100	100	100
(Actin);(Gelsolin)	1	11	29	11	29	5	1216	100	100	100
(Actin);(Gelsolin)	2	6	24	11	29	5	397	0	0	55
(Actin);(Gelsolin)	3	5	23	11	29	5	273	0	0	45
(Actin);(WH2)	1	8	9	8	9	0	962	100	100	100
(Actin);(RPEL)	1	7	7	7	7	31	914	100	100	100
(Activin_recp);(TGF_beta)	1	7	11	12	17	15	772	100	91	58
(Activin_recp);(TGF_beta)	2	7	11	12	17	15	361	91	82	58
(Activin_recp);(TGF_beta)	3	7	8	12	17	41	753	100	50	58
(ETF);(ETF)_(ETF_alpha)	1	9	15	9	15	10	3097	100	100	100
(Adaptin_N);(Clat_adaptor_s)	1	5	7	7	9	19	2666	100	100	71
(AdenylateSensor);(CBS)_(CBS)_(CBS)_(CBS)	1	7	21	7	21	3	779	100	100	100
(AdenylateSensor);(AMPKBI)	1	6	20	6	20	3	1987	100	100	100
(AMPKBI);(CBS)_(CBS)_(CBS)_(CBS)	1	7	21	7	21	3	1108	100	100	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	1	7	15	7	15	42	420	100	93	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	2	7	15	7	15	42	684	100	93	100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)	3	5	13	7	15	47	379	0	0	71
(Amidase);(GatB_N)_(GatB_Yqey)	1	6	12	6	12	37	1326	100	100	100
(Amidase);(Glu-tRNAGln)	1	5	11	5	11	25	2486	100	100	100
(GatB_N)_(GatB_Yqey);(Glu-tRNAGln)	1	5	11	5	11	25	1786	100	100	100
(CBFD_NFYB_HMF);(MCM2_N)	1	5	6	5	6	83	1186	100	100	100
(Histone);(MCM2_N)	1	5	6	5	6	83	843	100	100	100
(Antistasin);(Trypsin)	1	5	5	5	5	13	572	100	100	100
(Cytochrom_B_C);(Cytochrome_B)	1	5	13	5	13	11	3070	100	100	100
(ATP1G1_PLM_MAT8);(Na_K-ATPase)	1	6	30	7	32	0	397	100	100	86
(MHC_I)_(C1-set);(V-set)_(C1-set)_(C1-set_C)	1	9	21	17	31	10	490	86	76	53
(MHC_I)_(C1-set);(V-set)_(C1-set)_(C1-set_C)	2	7	9	17	31	57	451	100	33	41
(Bclx_interact);(BH4)_(Bcl-2)	1	11	13	11	13	10	996	100	100	100
(Beta-lactamase2);(BLIP)	1	7	14	7	14	39	1214	93	100	100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	1	5	10	5	10	34	666	100	100	100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)	2	5	10	5	10	34	420	100	100	100
(Bowman-Birk_leg)_(Bowman-Birk_leg);(Trypsin)	1	5	6	5	6	56	706	83	33	100
(Mago_nashi);(RRM_1)	1	10	10	10	10	0	1277	100	100	100
(MHC_I_3)_(C1-set);(V-set)_(C1-set)	1	8	32	16	41	65	323	100	72	50
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	1	7	12	7	12	43	364	92	8	100
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	2	7	12	7	12	43	460	92	8	100
(Me-amine-dh_H);(Me-amine-dh_L)	1	13	68	13	68	4	1510	99	94	100
(Me-amine-dh_H);(Me-amine-dh_L)	2	13	68	13	68	4	1144	94	96	100
(CENP-S);(CENP-X)	1	7	13	7	13	4	2295	100	100	100
(MRP-L47);(Ribosomal_L23)	1	5	5	5	5	16	1663	60	20	100
(PBP);(RF-1)	1	5	5	5	5	79	780	60	0	100
(Fer4_7);(PsaA_PsaB)	1	8	13	8	13	10	857	100	54	100
(Fer4_7);(PsaA_PsaB)	2	7	12	8	13	78	404	100	58	88
(Fer4_7);(PsaD)	1	8	13	8	13	0	1443	100	54	100
(Fer4_7);(PSI_PsaE)	1	8	13	8	13	0	472	100	54	100
(PsaA_PsaB);(PsaD)	1	7	12	8	13	0	759	100	58	88
(PsaA_PsaB);(PsaD)	2	7	12	8	13	0	743	100	58	88
(PsaA_PsaB);(PsaL)	1	6	11	7	12	0	307	100	64	86
(PsaA_PsaB);(PsaL)	2	6	11	7	12	0	458	100	64	86
(PsaA_PsaB);(PSI_8)	1	6	11	7	12	10	583	100	64	86
(PsaA_PsaB);(PSI_PsaE)	1	7	12	8	13	0	392	100	58	88
(PsaA_PsaB);(PSI_PsaE)	2	6	8	8	13	43	290	100	50	75
(PsaA_PsaB);(PSI_PsaF)	1	7	12	7	12	0	819	100	58	100
(PsaA_PsaB);(PSI_PSAK)	1	5	7	8	13	14	386	100	14	62
(PsaD);(PsaL)	1	7	12	7	12	0	480	100	58	100
(PSI_PsaF);(PSI_PsaJ)	1	6	11	7	12	0	660	100	64	86
(Rhv);(VP4_2)	1	8	17	8	18	23	585	94	12	100
(Rhv);(VP4_2)	2	6	13	8	18	47	231	100	8	75
(Cullin)_(Cullin_Nedd8);(zf-rbx1)	1	10	10	10	10	30	2065	100	100	100
(MMS1_N)_(CPSF_A);(WD40)_(WD40)_(WD40)_(WD40)	1	6	11	6	11	50	2103	100	100	100
(Cupin_1);(Cupin_2)	1	5	6	5	6	89	1148	100	100	100
(Cupin_1);(Cupin_2)	2	5	6	5	6	15	1967	100	100	100
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_17)	1	7	51	7	51	0	2566	100	100	100
(Fer2_3)_(Fer4_17);(Sdh_cyt)	1	5	22	7	51	0	1518	100	100	71
(Cys_knot);(Hormone_6)	1	6	7	6	7	0	2132	100	100	100
(Cystatin);(Peptidase_C1)	1	6	7	6	7	21	894	100	100	100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Gar1)	1	5	5	5	5	24	855	100	100	100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Nop10p)	1	10	10	10	10	27	1331	100	100	100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	8	17	8	17	0	887	100	82	100
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	5	5	5	5	47	1718	100	80	100
(E3_binding);(Pyr_redox_2)_(Pyr_redox_dim)	1	6	6	6	6	6	478	100	17	100
(E3_binding);(Pyr_redox_2)_(Pyr_redox_dim)	2	6	6	6	6	6	409	100	17	100
(Ecotin);(Trypsin)	1	12	17	12	17	27	952	100	100	100
(Ecotin);(Trypsin)	2	10	15	12	17	0	512	93	100	83
(EF-hand_1)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(IQ)_(IQ)	1	5	7	5	7	32	1636	86	57	100
(EF-hand_7);(Lectin_leg-like)	1	6	9	6	9	88	763	100	100	100
(EGF);(Recep_L_domain)_(Furin-like)_(Recep_L_domain)_(GF_rec ep_IV)	1	6	7	6	7	33	1554	100	100	100
(Ribosomal_S2);(Ribosomal_S21e)	1	8	8	8	8	32	1464	25	12	100
(Ribosomal_L18p)_(Ribosomal_L18_c);(Ribosomal_L5)_(Ribosomal _L5_C)	1	7	66	7	66	0	222	100	2	100
(Ribosomal_L23);(Ribosomal_L39)	1	8	67	8	67	49	276	99	1	100
(Enterotoxin_a);(Enterotoxin_b)	1	6	15	6	15	61	310	100	67	100
(Enterotoxin_a);(Enterotoxin_b)	2	6	15	6	15	61	529	100	67	100
(Ephrin);(Ephrin_lbd)	1	7	7	10	10	4	1124	100	100	70
(EpoR_lig-bind)_(fn3);(Hormone_1)	1	7	18	7	18	0	1193	100	100	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	1	14	32	14	32	31	1737	100	88	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	2	12	27	14	32	31	853	100	96	86
(Ribosomal_L28);(Ribosomal_L9_N)	1	6	6	6	6	10	296	100	0	100
(PPTA)_(PPTA)_(PPTA)_(PPTA)_(PPTA);(Prenyltrans)_(Prenyltran s)_(Prenyltrans)_(Prenyltrans)_(Prenyltrans)	1	6	79	6	79	3	3063	94	100	100
(FGF);(Ig_3)_(I-set)	1	8	10	8	10	33	1427	100	100	100
(Nop);(Ribosomal_L7Ae)	1	6	7	6	7	6	543	100	86	100
(Fimbrial);(PapD_N)_(PapD_C)	1	12	14	12	14	1	1663	100	100	100
(fn3);(HH_signal)_(Hint)	1	5	6	5	6	78	667	100	17	100
(Serpin);(Trypsin)	1	10	10	14	14	24	1122	100	100	71
(MHC_II_alpha)_(C1-set)_(C1-set_C);(Stap_Strp_toxin)_(Stap_S trp_tox_C)	1	9	17	11	20	29	678	100	0	82
(G-alpha);(RGS)	1	10	10	10	10	37	875	100	10	100
(GDI);(Ras)	1	5	6	5	6	6	1161	100	83	100
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)	1	10	10	14	14	31	1674	100	80	71
(HECT);(ubiquitin)	1	6	6	7	8	51	834	83	83	86
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)_(C1-set)	1	5	6	9	10	29	696	100	50	56
(MHC_II_alpha)_(C1-set)_(C1-set_C);(V-set)_(C1-set)_(C1-set_ C)	1	6	7	7	8	56	271	100	29	86
(Plug_translocon)_(SecY);(SecE)	1	13	15	17	19	21	1601	80	67	76
(Peptidase_C12);(ubiquitin)	1	9	11	9	11	11	1136	100	100	100
(IGFBP);(Insulin)	1	5	5	5	5	58	820	100	100	100
(IL4Ra_N)_(fn3);(IL6Ra-bind)_(fn3)	1	5	5	5	5	18	882	100	40	100
(Inhibitor_I42);(Peptidase_C1)	1	5	5	6	6	36	1074	100	100	83
(RanGAP1_C);(UQ_con)	1	6	11	6	11	81	569	100	9	100
(Kazal_1);(Trypsin)	1	10	35	10	35	5	639	100	97	100
(Plug_translocon)_(SecY);(Sec61_beta)	1	8	10	14	16	0	1297	70	60	57
(Kunitz_legume);(Trypsin)	1	6	7	7	8	32	986	100	100	86
(Lys);(V-set)	1	5	23	23	54	79	526	91	22	22
(Lys);(V-set)	2	5	23	23	54	79	382	91	22	22
(NHase_alpha);(NHase_beta)	1	8	46	9	56	16	3087	100	100	89
(NHase_alpha);(NHase_beta)	2	5	31	9	56	37	296	16	58	56
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	1	21	54	22	74	0	3602	100	100	95
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	2	5	14	22	74	47	814	86	100	23
(OTCace_N)_(OTCace);(PyrI)_(PyrI_C)	1	7	62	7	63	32	677	100	98	100
(Pacifastin_I);(Trypsin)	1	7	7	7	7	10	903	100	100	100
(PBD);(Ras)	1	5	6	5	7	8	1121	100	67	100
(Peptidase_C48);(Rad60-SLD)	1	10	14	10	14	15	1026	100	86	100
(Peptidase_M10);(TIMP)	1	8	9	8	9	42	1075	100	89	100
(Peptidase_S8);(potato_inhibit)	1	11	29	11	29	32	835	100	100	100
(Ras);(RBD-FIP)	1	5	6	7	9	35	668	100	83	71
(Plexin_cytopl);(Ras)	1	5	5	6	6	49	676	100	100	83
(Ras);(VPS9)	1	5	5	5	5	24	992	100	100	100
(Ras);(RasGEF_N)_(RasGEF)	1	5	20	5	20	16	1622	100	100	100
(Ras);(Rho_GDI)	1	7	7	7	7	53	1312	100	100	100
(Ras);(RhoGEF)_(PH)	1	10	12	11	13	5	1514	100	100	91
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	1	13	52	13	52	2	1775	100	96	100
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	2	10	24	13	52	29	316	100	100	77
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	1	11	44	11	44	31	890	98	91	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	2	11	44	11	44	31	1789	100	95	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	3	11	44	11	44	31	453	98	89	100
(Sec1);(Vps16_C)	1	5	5	5	5	0	2079	100	80	100
(Squash);(Trypsin)	1	7	10	7	10	40	812	100	100	100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)	1	5	9	5	9	43	626	100	44	100
(TBP)_(TBP);(TFIIB)_(TFIIB)	1	5	7	5	7	31	1026	100	86	100
(ubiquitin);(zf-A20)	1	5	7	7	10	30	385	57	0	71
(UQ_con);(zf-RING_2)	1	5	5	6	6	27	552	100	20	83
(C1-set);(MHC_I)_(C1-set)	1	328	679	329	753	0	1278	100	96	100
(C1-set);(MHC_I)_(C1-set)	2	29	73	329	753	0	277	0	1	9
(C1-set);(MHC_I)_(C1-set)	3	26	86	329	753	0	259	0	0	8
(C1-set);(MHC_I)_(C1-set)	4	22	38	329	753	0	267	0	8	7
(C1-set);(MHC_I)_(C1-set)	5	18	35	329	753	89	345	0	11	5
(C1-set);(MHC_I)_(C1-set)	6	18	35	329	753	89	331	0	0	5
(C1-set);(MHC_I)_(C1-set)	7	14	114	329	753	0	212	1	0	4
(C1-set);(MHC_I)_(C1-set)	8	11	33	329	753	0	540	0	3	3
(C1-set);(MHC_I)_(C1-set)	9	11	39	329	753	69	226	0	0	3
(C1-set);(MHC_I)_(C1-set)	10	11	16	329	753	69	343	0	0	3
(C1-set);(MHC_I)_(C1-set)	11	9	16	329	753	27	306	25	38	3
(C1-set);(MHC_I)_(C1-set)	12	9	14	329	753	81	321	0	0	3
(C1-set);(MHC_I)_(C1-set)	13	8	12	329	753	69	239	0	0	2
(C1-set);(MHC_I)_(C1-set)	14	8	13	329	753	69	372	0	0	2
(C1-set);(MHC_I)_(C1-set)	15	7	11	329	753	69	237	0	9	2
(C1-set);(MHC_I)_(C1-set)	16	5	9	329	753	73	286	0	0	2
(C1-set);(MHC_I)_(C1-set)	18	5	9	329	753	86	215	0	0	2
(C1-set);(MHC_I)_(C1-set)	19	5	5	329	753	82	418	0	0	2
(C1-set);(MHC_I)_(C1-set)	20	5	6	329	753	70	296	0	0	2
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	8	10	8	10	34	2358	100	100	100
(Complex1_49kDa);(Fer4_7)	1	8	10	8	10	41	1311	100	100	100
(Complex1_49kDa);(Oxidored_q6)	1	9	11	9	11	38	1175	91	91	100
(COX1);(COX2_TM)_(COX2)	1	11	48	11	48	0	3565	96	90	100
(COX1);(COX3)	1	9	38	9	38	0	2526	95	89	100
(COX1);(COX4)	1	6	34	6	34	0	1327	94	88	100
(COX1);(COX5B)	1	6	34	6	34	0	1234	94	82	100
(COX1);(COX7C)	1	6	34	6	34	0	1693	94	79	100
(COX1);(COX8)	1	6	34	6	34	0	1042	94	85	100
(COX2_TM)_(COX2);(COX6B)	1	6	34	6	34	0	953	94	82	100
(COX2_TM)_(COX2);(COX6C)	1	6	34	6	34	0	1446	94	88	100
(COX3);(COX5B)	1	6	34	6	34	0	882	94	82	100
(COX3);(COX6A)	1	6	34	6	34	0	1617	91	74	100
(COX3);(COX7a)	1	6	34	6	34	0	1303	94	88	100
(COX4);(COX5A)	1	6	34	6	34	0	1254	94	88	100
(COX4);(COX7B)	1	6	34	6	34	0	1435	94	88	100
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)	1	19	58	19	59	0	1616	95	93	100
(Cytochrom_C1);(UCR_14kD)	1	13	47	16	51	0	401	100	98	81
(Cytochrom_C1);(UCR_hinge)	1	16	50	16	51	0	1075	94	92	100
(Cytochrom_C1);(UCR_TM)_(Rieske)	1	10	33	14	49	0	783	100	97	71
(Cytochrom_C1);(UCR_UQCRX_QCR9)	1	13	47	16	51	0	852	100	98	81
(Cytochrom_C1);(UcrQ)	1	16	51	16	51	0	728	94	90	100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)	1	13	47	16	51	0	406	100	98	81
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)	1	16	51	16	51	0	1214	94	90	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	1	10	33	14	49	0	505	100	97	71
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	2	8	30	14	49	0	917	93	97	57
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)	1	16	50	16	51	0	990	94	92	100
(Fer4_7);(Oxidored_q6)	1	9	11	9	11	41	1332	100	100	100
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	1	6	22	10	38	0	802	100	95	60
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	2	6	22	10	38	0	1674	100	95	60
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)	1	9	30	16	51	0	396	87	97	56
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)	1	11	28	14	49	0	920	89	86	79
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)	1	5	23	8	28	26	268	100	100	62
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)	1	16	51	16	51	0	821	94	90	100
(UCR_14kD);(UcrQ)	1	13	47	16	51	0	470	100	98	81
(UCR_6-4kD);(UCR_UQCRX_QCR9)	1	5	18	8	21	10	547	100	89	62
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)	1	13	36	14	49	0	645	92	89	93
(UCR_TM)_(Rieske);(UcrQ)	1	8	25	14	49	0	600	100	96	57
(Fer4_7);(NADHdh)	1	5	5	5	5	0	776	100	100	100
(NADHdh);(Oxidored_q3)	1	6	6	6	6	0	1043	100	100	100
(NADHdh);(Oxidored_q6)	1	6	6	6	6	25	1249	83	83	100
(Oxidored_q2);(Oxidored_q3)	1	5	5	8	8	20	3104	100	100	62
(Oxidored_q2);(Oxidored_q4)	1	6	6	6	6	16	394	100	100	100
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	5	5	5	5	32	494	100	100	100
(Ribosomal_L13);(Ribosomal_L20)	1	157	289	169	317	0	519	99	16	93
(Ribosomal_L13);(Ribosomal_L20)	2	11	11	169	317	0	523	82	45	7
(Ribosomal_L13);(Ribosomal_L3)	1	73	86	88	160	0	410	17	3	83
(Ribosomal_L13);(Ribosomal_L3)	2	10	69	88	160	0	249	100	3	11
(Ribosomal_L14);(Ribosomal_L19)	1	165	298	174	322	0	803	98	15	95
(Ribosomal_L14);(Ribosomal_L19)	2	6	8	174	322	54	745	100	25	3
(Ribosomal_L14);(Ribosomal_L3)	1	92	164	99	171	0	409	54	5	93
(Ribosomal_L16);(Ribosomal_L27)	1	35	84	41	111	0	264	100	1	85
(Ribosomal_L17);(Ribosomal_L32p)	1	163	295	169	314	0	353	98	15	96
(Ribosomal_L18p);(Ribosomal_L27)	1	7	8	13	14	0	247	100	12	54
(Ribosomal_L19);(Ribosomal_L3)	1	158	290	173	321	0	715	98	16	91
(Ribosomal_L19);(Ribosomal_L3)	3	6	8	173	321	54	727	100	25	3
(Ribosomal_L20);(Ribosomal_L21p)	1	171	307	173	322	0	967	98	14	99
(Ribosomal_L22);(Ribosomal_L32p)	1	168	304	173	322	0	462	98	16	97
(Ribosomal_L23);(Ribosomal_L29)	1	174	365	183	391	0	481	98	13	95
(Ribosomal_L23);(Ribosomal_L29)	2	7	8	183	391	10	505	100	0	4
(Ribosomal_L27A);(Ribosomal_L35p)	1	143	261	169	317	0	788	98	13	85
(Ribosomal_L27A);(Ribosomal_L35p)	2	13	25	169	317	0	577	92	48	8
(Ribosomal_L27A);(Ribosomal_L35p)	3	7	8	169	317	10	634	100	0	4
(Ribosomal_L27A);(Ribosomal_L35p)	4	6	8	169	317	0	662	100	25	4
(Ribosomal_L27A);(Ribosomal_L4)	1	132	238	168	315	0	456	97	18	79
(Ribosomal_L27A);(Ribosomal_L4)	2	22	29	168	315	10	430	100	0	13
(Ribosomal_L27A);(Ribosomal_L4)	3	12	22	168	315	0	355	100	41	7
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	1	60	145	85	189	0	964	99	14	71
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	2	9	10	85	189	0	647	100	20	11
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	4	5	5	85	189	0	603	100	20	6
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)	1	74	87	79	92	0	765	21	8	94
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)	2	5	5	79	92	43	521	60	0	6
(A2M_N)_(A2M_N_2);(A2M_recep)_(NTR)	1	6	9	6	9	0	716	100	100	100
(AAA);(JAB)	1	5	5	11	11	66	378	100	20	45
(AAA);(Proteasome_A_N)_(Proteasome)	1	12	12	13	13	31	425	100	42	92
(AAA);(Proteasome_A_N)_(Proteasome)	2	7	7	13	13	61	434	100	71	54
(AAA);(Proteasome_A_N)_(Proteasome)	3	6	6	13	13	50	288	100	33	46
(AAA);(Proteasome_A_N)_(Proteasome)	5	5	5	13	13	0	346	100	0	38
(AAA);(Proteasome_A_N)_(Proteasome)	6	5	5	13	13	55	296	100	40	38
(CSN8_PSD8_EIF3K);(JAB)	1	5	5	12	12	32	302	100	60	42
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)	1	5	5	10	10	0	375	100	20	50
(CSN8_PSD8_EIF3K);(RPN7)_(PCI)	1	7	7	8	8	0	322	100	14	88
(DSS1_SEM1);(RPN7)_(PCI)	1	10	10	15	15	10	675	100	50	67
(DSS1_SEM1);(RPN7)_(PCI)	2	5	5	15	15	89	917	100	0	33
(JAB);(JAB)_(MitMem_reg)	1	16	17	18	20	14	2915	100	47	89
(JAB)_(MitMem_reg);(RPN7)_(PCI)	1	14	15	17	18	0	504	100	53	82
(Proteasome);(Proteasome)_(Pr_beta_C)	1	22	264	27	311	0	1112	100	84	81
(Proteasome);(Proteasome)_(Pr_beta_C)	2	18	220	27	311	0	889	100	77	67
(Proteasome);(Proteasome)_(Pr_beta_C)	3	17	257	27	311	0	1405	100	82	63
(Proteasome);(Proteasome)_(Pr_beta_C)	4	5	5	27	311	20	1034	100	0	19
(Proteasome);(Proteasome_A_N)_(Proteasome)	1	35	284	35	324	0	493	100	78	100
(Proteasome);(Proteasome_A_N)_(Proteasome)	2	30	279	35	324	0	424	100	78	86
(Proteasome);(Proteasome_A_N)_(Proteasome)	3	6	6	35	324	18	388	100	0	17
(Proteasome);(Proteasome_A_N)_(Proteasome)	4	5	5	35	324	21	431	100	0	14
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	1	22	221	27	311	0	635	100	74	81
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	2	21	259	27	311	0	638	100	78	78
(DSS1_SEM1);(PCI)	1	5	5	5	5	0	2155	100	100	100
(ubiquitin);(UCH)	1	10	16	10	16	5	1810	100	88	100
(eIF-6);(Ribosomal_L14)	1	6	6	6	6	0	877	100	50	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	1	49	62	75	88	0	763	11	0	65
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	2	21	21	75	88	0	686	29	14	28
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)	1	57	70	74	87	0	959	20	6	77
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)	2	15	15	74	87	10	989	0	0	20
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	47	60	61	74	0	481	13	7	77
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	2	12	12	61	74	0	229	17	0	20
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)	1	40	53	40	53	38	493	15	8	100
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)	1	75	88	77	90	0	664	18	5	97
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	1	74	87	76	89	0	513	17	5	97
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	2	59	72	76	89	0	272	19	6	78
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	1	12	12	28	28	0	252	100	33	43
(Ribosomal_L13);(Ribosomal_L18A)	1	52	65	72	85	0	682	12	0	72
(Ribosomal_L13);(Ribosomal_L18A)	2	20	20	72	85	0	667	30	15	28
(Ribosomal_L13);(Ribosomal_L35Ae)	1	46	48	63	76	0	237	15	0	73
(Ribosomal_L13);(Ribosomal_L35Ae)	2	17	17	63	76	0	246	29	18	27
(Ribosomal_L13e);(Ribosomal_L15e)	1	73	86	73	86	0	516	19	5	100
(Ribosomal_L13e);(Ribosomal_L18)	1	58	71	62	75	0	235	15	6	94
(Ribosomal_L13e);(Ribosomal_L27A)	1	76	89	76	89	0	1476	21	4	100
(Ribosomal_L13e);(Ribosomal_L29)	1	73	86	75	88	0	910	22	5	97
(Ribosomal_L13e);(Ribosomal_L36e)	1	72	85	72	85	0	649	18	5	100
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	36	36	40	40	0	222	17	3	90
(Ribosomal_L14);(Ribosomal_L24e)	1	92	164	96	169	0	514	54	5	96
(Ribosomal_L15e);(Ribosomal_L29)	1	75	88	75	88	0	356	18	5	100
(Ribosomal_L15e);(Ribosomal_L36e)	1	74	87	74	87	0	527	18	5	100
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	71	84	73	86	0	270	19	5	97
(Ribosomal_L15e);(Ribosomal_L7Ae)	1	80	152	88	160	0	898	57	3	91
(Ribosomal_L18);(Ribosomal_L27A)	1	77	90	80	93	0	891	21	4	96
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)	1	56	69	72	85	0	263	16	6	78
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	74	87	76	89	0	1114	20	5	97
(Ribosomal_L18A);(Ribosomal_L21e)	1	71	84	74	87	0	906	18	5	96
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)	1	64	77	75	88	0	460	21	5	85
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	35	48	39	52	0	232	17	8	90
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)	1	70	83	73	86	0	302	16	5	96
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)	1	88	160	90	162	0	1206	54	3	98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)	1	64	77	72	85	0	297	21	5	89
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	60	73	73	86	0	590	21	5	82
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)	2	13	13	73	86	0	617	15	0	18
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	76	89	82	95	0	848	19	4	93
(Ribosomal_L22);(Ribosomal_L6e)	1	5	5	6	6	82	278	0	0	83
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)	1	66	79	70	83	0	223	20	6	94
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)	1	61	74	69	82	0	375	20	5	88
(Ribosomal_L24e);(Ribosomal_L3)	1	79	92	81	94	0	592	20	8	98
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)	1	19	19	21	21	47	226	16	5	90
(Ribosomal_L27A);(Ribosomal_L36e)	1	60	73	62	75	0	230	16	5	97
(Ribosomal_L29);(Ribosomal_L37e)	1	16	16	16	16	0	205	19	0	100
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)	1	62	75	70	83	0	1073	20	5	89
(Ribosomal_L32e);(Ribosomal_L6e)	1	37	50	37	50	78	527	14	8	100
(Ribosomal_L34e);(Ribosomal_L7Ae)	1	73	86	79	92	0	262	17	5	92
(Ribosomal_L35Ae);(Ribosomal_L6e)	1	40	53	40	53	0	873	15	8	100
(Ribosomal_L36e);(Ribosomal_L7Ae)	1	64	77	72	85	0	307	21	5	89
(Ribosomal_L36e);(Ribosomal_L7Ae)	2	8	8	72	85	10	349	0	0	11
(Ribosomal_L37ae);(Ribosomal_L7Ae)	1	8	8	8	8	18	247	12	0	100
(Ribosomal_L37e);(Ribosomal_L39)	1	64	77	65	78	39	230	17	5	98
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)	1	71	84	77	90	0	244	17	5	92
(DNA_RNApol_7kD);(RNA_pol_A_bac)	1	44	140	44	140	0	572	100	59	100
(DNA_RNApol_7kD);(RNA_pol_N)	1	8	12	23	67	40	185	100	67	35
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	39	136	39	136	0	1006	100	57	100
(RNA_pol_A_bac);(RNA_pol_L_2)	1	44	140	44	140	0	2039	100	69	100
(RNA_pol_A_bac);(RNA_pol_N)	1	44	140	44	140	0	1107	100	81	100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	23	112	25	117	0	361	100	72	92
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	36	128	36	128	0	1699	100	80	100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	33	125	33	125	36	965	100	53	100
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	37	132	39	136	0	444	100	69	95
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	34	126	34	126	36	1544	100	77	100
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	33	125	36	128	36	1371	100	64	92
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	39	136	39	136	0	1529	100	80	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	32	124	34	126	36	9076	100	67	94
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)	1	8	23	17	62	0	238	100	52	47
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)	1	34	126	34	126	36	2110	100	76	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	33	123	34	126	36	1893	100	75	97
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	33	125	34	126	35	1472	100	75	97
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	26	71	27	72	36	597	100	55	96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)	1	16	17	16	17	33	2020	100	18	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)	1	10	28	16	61	0	295	100	36	62
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(SHS2_Rpb7-N)_(S1)	1	9	14	19	64	0	261	100	50	47
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	16	17	16	17	33	1742	100	12	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_beta)	1	12	12	12	12	0	1378	100	8	100
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)	1	32	81	34	84	0	2054	100	57	94
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)	1	29	76	30	80	0	455	99	50	97
(TBP)_(TBP);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	13	13	13	13	33	516	100	8	100
(TBP)_(TBP);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	16	17	16	17	0	454	100	29	100
(TFIIF_alpha);(TFIIF_beta)	1	11	11	15	15	16	2113	100	9	73
(Actin);(ARPC4)	2	6	19	6	19	79	828	100	100	100
(Actin);(P16-Arc)	1	6	19	6	19	79	550	100	100	100
(Actin);(P21-Arc)	1	7	20	7	20	32	857	100	90	100
(Actin);(P34-Arc)	1	7	20	7	20	45	1647	100	100	100
(ARPC4);(P16-Arc)	1	7	20	7	20	29	913	100	100	100
(ARPC4);(P34-Arc)	1	7	20	7	20	11	2113	100	95	100
(Cyclin_N)_(Cyclin_N);(Pkinase)	1	5	6	5	6	0	1039	100	83	100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(FAD_binding_5)_(CO_deh_flav_ C)	1	7	23	7	23	0	1174	100	100	100
(ANAPC1);(ANAPC10)	1	5	5	5	5	0	1350	100	60	100
(Skp1_POZ);(ubiquitin)	1	14	36	14	37	10	1060	100	92	100
(Kinesin);(Tubulin)_(Tubulin_C)	1	16	16	31	31	0	549	94	12	52
(Kinesin);(Tubulin)_(Tubulin_C)	2	16	16	31	31	0	616	94	12	52
(Stathmin);(Tubulin)_(Tubulin_C)	1	5	60	5	65	0	646	100	85	100
(Stathmin);(Tubulin)_(Tubulin_C)	2	5	60	5	65	0	1547	100	85	100
(CBFD_NFYB_HMF);(Histone)	1	37	152	37	170	0	2446	100	97	100
(CBFD_NFYB_HMF);(Histone)	2	12	81	37	170	0	494	98	95	32
(CBFD_NFYB_HMF);(Histone)	3	12	85	37	170	0	269	98	94	32
(Thrombin_light);(Trypsin)	1	89	354	91	383	0	1168	100	99	98
(Thrombin_light);(Trypsin)	2	19	33	91	383	74	264	3	15	21
(Thrombin_light);(Trypsin)	3	6	21	91	383	0	201	0	0	7
(Thrombin_light);(Trypsin)	4	6	15	91	383	76	327	0	0	7
(Thrombin_light);(Trypsin)	6	5	5	91	383	74	641	0	20	5
(Med11);(Med17)	1	6	6	8	8	0	822	100	33	75
(Med11);(Med22)	1	5	5	5	5	10	1579	100	40	100
(Med17);(Med22)	1	6	6	8	8	0	693	100	17	75
(Med17);(Med6)	1	7	7	7	7	0	452	100	14	100
(ubiquitin);(UQ_con)	1	13	13	28	35	29	797	100	69	46
(ubiquitin);(UQ_con)	2	7	9	28	35	10	672	78	44	25
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	1	161	366	249	488	0	407	98	17	65
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	2	80	93	249	488	0	474	22	4	32
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	1	162	373	247	486	0	864	99	19	66
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	2	80	93	247	486	0	412	22	4	32
(Ribosom_S12_S23);(Ribosomal_S17)	1	138	326	153	377	0	221	98	24	90
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	2	33	111	113	232	0	217	99	10	29
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	3	5	5	113	232	83	1267	60	20	4
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	1	68	113	145	217	9	303	100	17	47
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	2	23	23	145	217	67	296	0	0	16
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)	1	18	31	20	33	0	274	0	0	90
(Ribosomal_S10);(Ribosomal_S14)	1	166	372	251	490	0	801	98	21	66
(Ribosomal_S10);(Ribosomal_S14)	2	84	97	251	490	10	754	22	4	33
(Ribosomal_S10);(Ribosomal_S9)	1	16	16	34	41	0	288	81	0	47
(Ribosomal_S11);(Ribosomal_S18)	1	85	262	107	311	0	312	100	8	79
(Ribosomal_S11);(Ribosomal_S21)	1	58	67	92	120	0	1027	100	15	63
(Ribosomal_S11);(Ribosomal_S21)	2	15	25	92	120	0	982	100	32	16
(Ribosomal_S11);(Ribosomal_S21)	3	6	12	92	120	0	1247	58	0	7
(Ribosomal_S11);(Ribosomal_S7)	1	134	307	159	374	0	243	98	21	84
(Ribosomal_S13);(Ribosomal_S19)	1	242	465	249	488	0	434	84	10	97
(Ribosomal_S14);(Ribosomal_S19)	1	72	100	87	115	0	293	97	18	83
(Ribosomal_S18);(Ribosomal_S21)	1	42	66	71	98	0	255	92	8	59
(Ribosomal_S18);(Ribosomal_S6)	1	157	360	170	396	0	944	98	9	92
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)	1	13	13	16	16	0	513	38	8	81
(Ribosomal_S2);(Ribosomal_S8)	1	74	248	75	272	0	258	100	8	99
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	1	125	330	205	444	0	320	99	22	61
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	2	45	58	205	444	0	370	14	3	22
(Ribosomal_S4)_(S4);(Ribosomal_S6)	1	22	42	54	123	9	402	2	0	41
(Ribosomal_S4)_(S4);(Ribosomal_S6)	2	8	27	54	123	10	258	0	0	15
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	1	152	357	253	492	0	568	99	19	60
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	2	80	93	253	492	0	541	22	4	32
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	4	6	6	253	492	28	538	83	0	2
(Ribosomal_S7);(Ribosomal_S9)	1	192	377	226	442	0	444	80	14	85
(SecE);(SecY)	1	6	7	13	14	0	1843	86	86	46
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C); (LSM)	1	10	10	10	10	0	528	100	0	100
(LRR_9);(RRM_1)	1	6	6	6	6	0	497	100	17	100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	1	21	50	21	51	0	495	100	94	100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	2	19	49	21	51	0	566	100	94	90
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	3	17	46	21	51	0	521	100	98	81
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	1	19	49	21	51	0	580	100	94	90
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	2	17	47	21	51	0	250	100	94	81
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	3	15	31	21	51	0	270	100	97	71
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)	1	11	24	25	39	0	813	100	100	44
(ATP-synt);(ATP-synt_Eps)	1	17	30	20	33	0	769	100	100	85
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab)_ (ATP-synt_ab_C)	1	31	62	38	69	0	2007	100	94	82
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	1	5	5	15	15	22	399	100	40	33
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)	1	11	24	16	29	10	677	100	100	69
(Mt_ATP-synt_B);(Mt_ATP-synt_D)	1	10	10	13	13	0	1299	100	100	77
(ATP-synt);(ATP-synt_DE_N)	1	5	5	5	5	0	509	100	40	100
(C1-set);(MHC_I)_(ig)	1	8	10	8	10	50	1250	100	100	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	1	7	8	7	8	0	1542	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	2	7	8	7	8	0	1070	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(vATP-synt_E)	1	6	6	6	6	0	766	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	1	7	14	7	14	45	2288	100	79	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	2	7	14	7	14	45	1500	100	79	100
(Aurora-A_bind);(Pkinase)	1	5	5	5	5	12	1213	100	100	100
(Med18);(Med20)	1	8	8	8	8	80	1518	100	50	100
(MHC_I)_(C1-set);(V-set)_(DUF1968)	1	43	83	64	126	0	441	96	57	67
(MHC_I)_(C1-set);(V-set)_(DUF1968)	2	6	7	64	126	40	468	86	29	9
(MHC_I)_(C1-set);(V-set)_(DUF1968)	3	6	7	64	126	40	389	86	57	9
(V-set)_(C1-set)_(C1-set_C);(V-set)_(DUF1968)	1	42	66	42	66	10	2003	100	97	100
(CBFD_NFYB_HMF);(Histone)_(Histone_H2A_C)	1	17	126	18	143	0	423	98	96	94
(CBFD_NFYB_HMF);(Histone)_(Histone_H2A_C)	2	7	45	18	143	0	2510	100	98	39
(Histone);(Histone)_(Histone_H2A_C)	1	21	94	27	156	0	2501	100	91	78
(Histone);(Histone)_(Histone_H2A_C)	2	20	134	27	156	0	675	99	96	74
(Bcl-2);(BID)	1	6	9	6	9	5	910	100	78	100
(Ribosomal_L21e);(Ribosomal_L29e)	1	68	81	68	81	0	471	16	5	100
(Ribosomal_L24e);(Ribosomal_S6e)	1	32	45	34	47	0	816	0	0	94
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	8	8	8	8	10	480	0	0	100
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)	1	31	44	31	44	0	659	7	7	100
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)	1	13	13	19	19	70	222	15	15	68
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	11	24	11	24	74	564	0	0	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	1	7	40	7	42	0	1736	100	100	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	2	7	40	7	42	0	1582	100	100	100
(Ribosomal_L7Ae);(Ribosomal_S27)	1	28	41	32	45	0	508	12	7	88
(Ribosomal_L7Ae);(S10_plectin)	1	15	15	19	19	31	290	20	0	79
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	1	8	21	10	23	86	262	0	0	80
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)	1	28	28	34	34	0	370	0	0	82
(Ribosomal_S11);(Ribosomal_S26e)	1	70	83	78	91	0	1097	22	5	90
(Ribosomal_S11);(Ribosomal_S28e)	1	20	20	34	34	0	297	25	5	59
(Ribosomal_S13);(Ribosomal_S19e)	1	79	92	82	95	0	446	22	7	96
(Ribosomal_S11);(Ribosomal_S3Ae)	1	69	82	79	92	0	868	24	5	87
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)	1	16	16	17	17	0	266	31	0	94
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)	1	22	22	27	27	0	232	32	14	81
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)	1	31	33	32	34	10	211	12	9	97
(Ribosomal_S13);(Ribosomal_S25)	1	70	83	75	88	0	471	20	5	93
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)	1	11	24	11	24	74	527	0	0	100
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)	1	70	83	78	91	44	732	18	5	90
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)	1	81	94	83	96	0	718	21	4	98
(Ribosomal_S24e);(Ribosomal_S4)_(S4)	1	42	55	43	56	10	232	13	2	98
(Ribosomal_S14);(S10_plectin)	1	74	87	76	89	0	290	21	5	97
(Ribosomal_S28e);(Ribosomal_S7)	1	76	89	83	96	0	1142	18	4	92
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	1	50	63	68	81	0	949	19	5	74
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	2	8	8	68	81	10	1434	0	0	12
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	3	6	6	68	81	62	552	50	0	9
(Ribosomal_S7e);(Ribosomal_S8)	1	78	91	78	91	0	470	21	4	100
(TBP)_(TBP);(TFIIA)	1	15	16	15	16	0	667	100	25	100
(TFIIA);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	15	16	15	16	34	2109	100	31	100
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	33	46	33	46	10	541	4	2	100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)	1	11	24	11	24	74	418	0	0	100
(Ribosomal_S19e);(Ribosomal_S9)	1	44	44	50	50	0	292	23	11	88
(Inhibitor_I9);(Peptidase_S8)	1	16	25	16	25	0	1266	96	100	100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)	1	68	81	68	81	0	1522	19	4	100
(MHC_I)_(C1-set);(V-set)_(C1-set)	1	32	56	49	98	0	386	98	41	65
(MHC_I)_(C1-set);(V-set)_(C1-set)	2	5	12	49	98	10	260	0	0	10
(V-set)_(C1-set);(V-set)_(DUF1968)	1	127	209	129	216	0	2062	100	89	98
(V-set)_(C1-set);(V-set)_(DUF1968)	2	6	9	129	216	65	251	0	11	5
(V-set)_(C1-set);(V-set)_(DUF1968)	3	5	8	129	216	66	309	0	0	4
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	68	81	68	81	0	541	19	4	100
(Ribosomal_S21e);(Ribosomal_S27e)	1	39	52	39	52	55	438	15	2	100
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)	1	77	90	77	90	0	1322	20	4	100
(Ribosomal_S21e);(Ribosomal_S8)	1	67	80	67	80	0	282	19	4	100
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	1	73	86	80	93	0	541	20	5	91
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	2	7	7	80	93	0	525	29	0	9
(Ribosomal_S25);(Ribosomal_S7)	1	73	86	77	90	0	611	21	5	95
(Ribosomal_S26e);(Ribosomal_S28e)	1	7	7	10	10	64	233	29	0	70
(Ribosomal_S26e);(Ribosomal_S3Ae)	1	63	76	67	80	0	270	21	3	94
(Ribosomal_S27e);(Ribosomal_S7e)	1	31	31	31	31	0	350	26	6	100
(Ribosomal_S27e);(Ribosomal_S8)	1	80	93	80	93	0	489	22	4	100
(Ribosomal_S30);(Ribosomal_S4)_(S4)	1	42	55	42	55	0	505	9	2	100
(Ribosomal_S4)_(S4);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_ S4_C)	1	39	52	39	52	0	384	8	2	100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	10	23	10	23	86	256	0	0	100
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )	1	74	87	74	87	0	313	20	5	100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)	1	34	47	38	51	0	311	6	2	89
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)	1	35	35	43	43	0	631	34	11	81
(EGF)_(FXa_inhibition);(Trypsin)	1	8	14	8	14	38	888	100	100	100
(Tissue_fac)_(Interfer-bind);(Trypsin)	1	5	32	5	33	0	581	100	100	100
(eIF-5_eIF-2B);(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C)	1	8	9	8	9	0	1041	100	56	100
(eIF_4EBP);(IF4E)	1	6	9	10	18	33	852	100	100	60
(eIF-1a);(Ribosom_S12_S23)	1	13	13	22	22	0	462	100	23	59
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	32	32	35	35	0	488	38	9	91
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)	1	37	37	39	39	0	584	32	3	95
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	39	39	39	39	0	557	38	8	100
(Ribosomal_S24e);(S4)	1	9	9	10	10	0	225	78	22	90
(Ribosomal_S30);(S4)	1	22	22	22	22	10	485	45	14	100
(Ribosomal_S5)_(Ribosomal_S5_C);(S4)	1	31	31	36	36	0	356	26	10	86
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	35	35	35	35	0	285	43	9	100
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)	1	36	36	36	36	0	346	36	8	100
(Ribosomal_S17e);(Ribosomal_S2)	1	8	8	8	8	47	1274	25	12	100
(Ribosom_S12_S23);(ubiquitin)_(Ribosomal_S30)	1	14	14	14	14	55	397	21	0	100
(S4);(ubiquitin)_(Ribosomal_S30)	1	14	14	14	14	55	528	21	0	100
(Ribosomal_L18);(Ribosomal_L28e)	1	34	34	34	34	0	232	21	0	100
(Ribosomal_L28e);(Ribosomal_L32e)	1	33	33	37	37	0	755	24	0	89
(Ribosomal_L28e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	31	31	34	34	0	934	23	0	91
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	2	8	8	24	24	10	444	0	0	33
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	3	6	6	24	24	10	472	33	0	25
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	14	14	22	22	0	519	21	0	64
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	2	8	8	22	22	10	512	0	0	36
(Ribosomal_L32e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	14	14	22	22	0	234	21	0	64
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)	2	8	8	25	25	10	881	0	0	32
(Ribosomal_L4)_(Ribos_L4_asso_C);(Ribosomal_L6e_N)_(Ribosoma l_L6e)	1	13	13	21	21	0	348	23	0	62
(Ribosomal_L10)_(Ribosomal_60s);(Ribosomal_L11_N)_(Ribosomal _L11)	1	8	8	8	8	46	267	12	0	100
(C1-set);(MHC_I_3)_(C1-set)	1	38	94	38	96	0	1272	100	94	100
(MHC_I_3)_(C1-set);(V-set)_(DUF1968)	1	10	40	18	49	65	450	100	72	56
(C1-set)_(C1-set);(V-set)_(C1-set)	1	10	14	10	14	55	1739	100	100	100
(Synaptobrevin);(Syntaxin)_(SNARE)	1	21	23	22	24	0	1399	100	70	95
(Filo_glycop);(TLV_coat)	1	8	10	8	10	34	2308	90	50	100
(Filo_glycop);(TLV_coat)	2	8	10	8	10	34	398	50	40	100
(Filo_glycop);(TLV_coat)	3	8	10	8	10	34	454	50	40	100
(Ig_3)_(C1-set);(V-set)_(C1-set)	1	16	19	16	19	33	1800	100	89	100
(FKBP_C);(FRB_dom)	1	6	10	6	10	0	352	100	20	100
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	1	15	15	16	16	33	679	93	0	94
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	2	5	5	16	16	33	908	100	0	31
(Pico_P1A);(Rhv)	1	38	122	41	126	0	1016	100	42	93
(Pico_P1A);(Rhv)	2	30	114	41	126	0	814	100	38	73
(Pico_P1A);(Rhv)	3	29	100	41	126	0	533	100	37	71
(Flavi_NS2B);(Peptidase_S7)	1	5	6	5	6	0	2027	100	100	100
(Calici_coat);(HAV_VP)	1	5	5	5	5	12	3533	100	0	100
(Calici_coat);(Rhv)	1	5	5	7	7	12	1388	100	0	71
(HAV_VP);(Rhv)	1	8	8	9	9	0	1475	100	25	89
(Flu_PA);(Flu_PB1)	1	12	12	12	12	0	7442	100	92	100
(Flu_PA);(Flu_PB2)	1	8	8	10	10	0	2042	100	100	80
(Flu_PB1);(Flu_PB2)	1	7	8	10	11	0	5356	75	75	70
(RGM_N);(TGF_beta)	1	5	5	5	5	44	512	80	80	100
(RGM_N);(TGF_beta)	2	5	5	5	5	0	421	80	80	100
(FXa_inhibition);(Trypsin)	1	16	116	16	135	0	876	95	100	100
(Kunitz_BPTI);(Trypsin)	1	36	90	37	91	0	677	100	99	97
(Kunitz_BPTI);(Trypsin)	2	5	13	37	91	40	312	0	8	14
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	25	53	25	53	0	1937	100	83	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	2	22	50	25	53	0	256	100	88	88
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(zf- RanBP)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(R NA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	10	22	13	39	0	1152	100	73	77
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (RNA_pol_Rpb6)	1	5	16	10	35	0	193	100	94	50
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (zf-RanBP)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3 )_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	11	24	13	39	74	8311	100	88	85
(RNA_pol_Rpb6);(zf-RanBP)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_ (RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	12	25	13	39	74	2315	100	88	92
(Sld5);(Sld5)_(SLD5_C)	1	6	7	6	7	18	2000	100	57	100
(Sld5);(Sld5)_(SLD5_C)	2	6	7	6	7	0	246	100	57	100
(Sld5);(Sld5)_(SLD5_C)	3	6	7	6	7	16	1456	100	57	100
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	13	27	13	28	0	2276	100	100	100
(Cyclin_N)_(Cyclin_C);(Pkinase)	1	25	122	26	159	0	1527	99	98	96
(Cyclin_N)_(Cyclin_C);(Pkinase)	2	12	70	26	159	0	451	6	9	46
(Cyclin_N)_(Cyclin_C);(Pkinase)	4	6	25	26	159	0	384	0	0	23
(Spc24);(Spindle_Spc25)	1	8	8	8	8	10	1310	100	88	100
(GP120);(V-set)_(C1-set)	1	31	57	100	152	0	926	98	63	31
(GP120);(V-set)_(C1-set)	2	19	34	100	152	0	265	100	71	19
(GP120);(V-set)_(C1-set)	3	10	24	100	152	0	243	0	4	10
(GP120);(V-set)_(C1-set)	4	9	22	100	152	0	510	100	23	9
(GP120);(V-set)_(C1-set)	5	7	12	100	152	0	288	100	8	7
(GP120);(V-set)_(C1-set)	6	7	12	100	152	0	293	100	8	7
(GP120);(V-set)_(C1-set)	7	6	6	100	152	0	388	100	83	6
(GP120);(V-set)_(C1-set)	8	6	6	100	152	58	382	100	100	6
(GP120);(V-set)_(C1-set)	9	5	7	100	152	0	768	100	43	5
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)	1	14	29	14	30	19	756	100	62	100
(Cytochrom_B559);(Photo_RC)	1	14	28	14	30	10	462	100	71	100
(Cytochrom_B559);(PsbJ)	1	12	27	12	28	10	369	100	56	100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	1	13	27	13	29	31	1323	100	67	100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	2	12	27	13	29	0	319	100	67	92
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)	1	11	26	11	27	10	371	100	54	100
(MSP);(Photo_RC)	1	12	26	12	28	0	677	100	62	100
(MSP);(Photo_RC)	2	12	26	12	28	0	707	100	58	100
(MSP);(PSII)	1	12	25	12	28	0	1292	100	64	100
(MSP);(PSII)	2	12	26	12	28	0	769	100	58	100
(MSP);(PSII)	3	10	18	12	28	0	393	78	11	83
(Photo_RC);(PsbH)	1	12	26	12	28	31	269	100	62	100
(GP120);(GP41)	1	11	18	11	19	0	2563	94	50	100
(GP120);(GP41)	2	5	6	11	19	71	244	83	17	45
(GP120);(ig)_(C2-set)	1	11	14	11	14	0	1061	100	50	100
(GP120);(ig)_(C2-set)_(CD4-extracel)	1	7	15	7	15	23	1022	100	60	100
(Photo_RC);(PsbI)	1	12	27	12	28	67	861	100	44	100
(Photo_RC);(PsbL)	1	12	27	12	28	0	251	100	67	100
(Photo_RC);(PsbL)	2	11	19	12	28	10	395	100	63	92
(Photo_RC);(PsbT)	1	12	27	12	28	0	520	100	70	100
(Photo_RC);(PsbT)	2	9	16	12	28	48	207	100	69	75
(Photo_RC);(PsbX)	1	11	24	11	27	31	577	100	75	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosom_ S12_S23)	1	18	18	22	24	0	352	50	0	82
(Photo_RC);(PSII)	1	13	28	13	29	0	782	100	79	100
(Photo_RC);(PSII)	2	13	26	13	29	0	3162	100	65	100
(Photo_RC);(PSII)	3	13	27	13	29	31	2705	100	74	100
(PsbH);(PsbX)	1	11	24	11	27	0	292	100	62	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosoma l_L10)_(Ribosomal_60s)	1	6	6	6	6	54	582	0	0	100
(PsbH);(PSII)	1	12	27	12	28	61	1873	100	67	100
(PsbI);(PSII)	1	12	25	12	28	0	430	100	44	100
(PsbK);(PSII)	1	13	26	13	29	0	783	100	58	100
(Pico_P1A)_(Rhv);(Rhv)	1	8	13	8	14	0	1695	62	8	100
(Pico_P1A)_(Rhv);(Rhv)	2	6	11	8	14	34	1171	55	9	75
(PsbK);(Ycf9)	1	12	27	12	28	12	270	100	59	100
(Hemagglutinin);(V-set)_(C1-set)	1	5	7	52	62	5	507	100	29	10
(PsbL);(PsbM)	1	12	27	12	28	0	802	100	74	100
(PsbL);(PsbT)	1	12	27	12	28	10	602	100	74	100
(PsbL);(PSII)	1	12	27	12	28	10	609	100	70	100
(PsbM);(PsbT)	1	7	11	10	26	44	214	100	45	70
(PSII);(Ycf9)	1	12	24	12	28	0	432	100	58	100
(Hormone_recep);(SRC-1)	1	9	16	50	186	0	675	100	100	18
(IBN_N)_(Xpo1)_(B56)_(CRM1_C);(Ras)	1	6	25	6	27	44	2009	100	100	100
(Ran_BP1);(Ras)	1	7	26	8	27	53	2144	100	96	88
(Rad60-SLD);(UQ_con)	1	7	7	12	13	18	568	71	14	58
(Rad60-SLD);(UQ_con)	2	5	6	12	13	47	586	100	83	42
(KOW)_(Ribosomal_L6e);(Ribosomal_L35Ae)	1	7	7	7	7	0	866	29	0	100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)	1	5	5	8	8	75	888	0	0	62
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)	1	6	6	9	9	75	569	0	0	67
(Ribosomal_S13);(Stm1_N)	1	6	6	9	9	75	519	0	0	67
(Ribosomal_S19);(Stm1_N)	1	6	6	9	9	75	423	0	0	67
(PCRF)_(RF-1);(Ribosomal_L11_N)_(Ribosomal_L11)	1	5	5	5	6	0	272	100	40	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)	1	6	21	7	26	41	993	100	81	86
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	25	56	25	59	0	1459	98	86	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	9	26	9	29	0	2770	100	88	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	8	32	8	32	0	1856	100	97	100
(Cohesin);(Dockerin_1)_(Dockerin_1)	1	7	7	11	11	4	907	100	100	64
(MHC_II_alpha)_(C1-set)_(C1-set_C);(MHC_II_beta)_(C1-set)	1	88	118	88	118	0	2597	100	99	100
(MHC_II_alpha)_(C1-set)_(C1-set_C);(MHC_II_beta)_(C1-set)	2	16	18	88	118	57	379	17	17	18
(MHC_II_alpha)_(C1-set)_(C1-set_C);(MHC_II_beta)_(C1-set)	3	9	10	88	118	87	338	0	0	10
(MHC_II_alpha)_(C1-set)_(C1-set_C);(MHC_II_beta)_(C1-set)	4	5	5	88	118	53	294	20	20	6
(MazE_antitoxin);(PIN)	1	5	5	5	5	18	1289	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_beta_N)_(MCR_beta)	1	7	10	7	10	47	1209	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_beta_N)_(MCR_beta)	2	7	10	7	10	47	2210	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_gamma)	1	7	10	7	10	47	605	100	100	100
(MCR_alpha_N)_(MCR_alpha);(MCR_gamma)	2	7	10	7	10	47	2478	100	100	100
(MCR_beta_N)_(MCR_beta);(MCR_gamma)	1	7	10	7	10	47	2685	100	100	100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)	1	11	64	11	65	10	4711	100	100	100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)	2	6	32	11	65	10	422	100	100	55
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	1	18	20	20	23	10	2816	100	85	90
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)	1	7	9	12	15	59	380	100	11	58
(MHC_II_alpha)_(C1-set)_(C1-set_C);(MHC2-interact)	1	5	5	8	9	57	673	100	100	62
(MHC_II_beta)_(C1-set);(MHC2-interact)	1	5	5	8	9	57	683	100	100	62
(Phenol_Hydrox)_(YHS);(TmoB)	1	5	33	5	33	52	1329	100	100	100
(MoaE);(ThiS)	1	6	8	6	8	0	939	100	100	100
(CRPV_capsid);(Rhv)	1	11	13	13	15	0	925	77	31	85
(CRPV_capsid);(Rhv)	2	9	9	13	15	0	1099	67	22	69
(JAB);(PCI)	1	5	5	12	13	74	503	100	0	42
(Photo_RC);(PRCH)_(PRC)	1	11	120	11	130	0	2679	100	98	100
(Photo_RC);(PRCH)_(PRC)	2	11	120	11	130	0	1623	100	97	100
(Cytochrom_B559)_(Cytochrom_B559a);(Cytochrom_C550)	1	9	24	9	25	0	241	100	71	100
(Cytochrom_C550);(Photo_RC)	1	12	27	12	28	0	558	100	78	100
(Cytochrom_C550);(Photo_RC)	2	5	9	12	28	0	203	100	78	42
(Cytochrom_C550);(PsbU)	1	11	26	11	27	0	631	100	69	100
(Cytochrom_C550);(PSII)	1	13	26	13	29	0	894	100	73	100
(MSP);(PsbU)	1	11	25	11	27	0	517	100	60	100
(PsbK);(PSII_Ycf12)	1	9	22	9	25	10	477	100	68	100
(PsbU);(PSII)	1	11	24	11	27	0	435	100	62	100
(PsbU);(PSII)	2	11	26	11	27	0	444	100	69	100
(PSII_Ycf12);(Ycf9)	1	6	9	9	25	39	376	100	56	67
(Cytochrom_C);(peroxidase)	1	7	19	8	21	37	562	100	32	88
(MHC_II_alpha)_(C1-set)_(C1-set_C);(V-set)_(C1-set)	1	10	13	13	17	51	394	85	38	77
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)	1	17	22	25	32	0	326	91	41	68
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)	1	28	32	33	41	0	354	97	25	85
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)	1	58	155	66	187	0	1135	99	12	88
(Ribosomal_L31);(Ribosomal_S13)	1	46	127	63	162	0	429	99	16	73
(Ribosomal_L31);(Ribosomal_S19)	1	34	96	59	147	0	457	99	22	58
(DCP1);(DCP2)_(NUDIX)	1	6	7	6	7	19	1068	100	71	100
(Med26)_(TFIIS_M)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2 )_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_po l_Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	7	7	7	7	31	2368	100	0	100
(Tfb2);(Tfb5)	1	5	5	5	5	10	982	100	0	100
(OTU);(ubiquitin)	1	10	12	10	12	0	1021	100	83	100
(PALP);(Trp_syntA)	1	5	66	5	66	33	1343	100	97	100
(ECR1_N)_(EXOSC1);(RNase_PH)_(RNase_PH_C)	1	8	10	9	11	0	789	100	90	89
(ECR1_N)_(EXOSC1);(RNase_PH)_(RNase_PH_C)	2	7	7	9	11	0	347	100	86	78
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	8	8	8	8	33	1195	100	88	100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	2	8	8	8	8	0	1532	100	88	100
(ECR1_N)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	7	7	7	7	84	905	100	86	100
(ECR1_N)_(KH_6);(RNase_PH)_(RNase_PH_C)	2	7	7	7	7	0	1342	100	86	100
(RNA_pol_I_A49);(RNA_polI_A34)	1	10	14	10	14	38	2082	100	93	100
(RNA_polI_A14);(SHS2_Rpb7-N)	1	9	13	9	13	0	1656	100	62	100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	1	6	31	6	32	42	1426	100	68	100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	2	6	31	6	32	42	641	100	68	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	1	10	29	10	31	0	4534	100	97	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	2	10	29	10	31	0	1302	100	97	100
(DUF5089);(Synaptobrevin)	1	6	7	10	12	10	961	100	100	60
(DUF5089);(Synaptobrevin)	2	6	7	10	12	10	309	100	100	60
(DUF5089);(Syntaxin)_(SNARE)	1	10	11	11	13	10	1456	100	100	91
(PKI);(Pkinase)	1	14	109	15	163	0	986	94	96	93
(PKI);(Pkinase)	2	11	132	15	163	79	400	2	2	73
(Polyketide_cyc2);(PP2C)	1	11	17	12	20	5	874	100	100	92
(Gla)_(EGF)_(FXa_inhibition);(Trypsin)	1	12	91	12	93	0	896	96	98	100
(EF-hand_7)_(EF-hand_7);(PPP5)_(Metallophos)	1	7	9	7	9	0	2149	100	100	100
(Ras);(RhoGAP)	1	7	7	7	7	53	1099	100	100	100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)	1	76	89	76	89	0	493	20	4	100
(Ricin_B_lectin)_(Ricin_B_lectin);(RIP)	1	11	39	11	39	29	1551	100	97	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)	1	8	14	8	14	84	887	93	100	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	11	33	12	37	0	7801	100	91	92
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_ (RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	10	32	12	37	0	225	100	88	83
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_ (RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(Sigma70_r1_1)_(Sigma70_r1 _2)_(Sigma70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	5	21	6	26	89	1909	100	100	83
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2 _1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	5	20	6	25	0	1748	100	80	83
(KH_2)_(Ribosomal_S3_C);(S10_plectin)	1	75	88	75	88	0	889	20	5	100
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)	1	17	125	17	144	0	2594	100	99	100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	11	24	11	24	74	743	0	0	100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)	1	31	44	31	44	0	480	5	2	100
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)	1	84	97	84	97	0	464	21	6	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	1	10	15	10	17	1	504	100	80	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	2	10	15	10	17	1	654	100	80	100
(Ribosom_S12_S23);(Ribosomal_S30)	1	67	80	68	81	0	473	22	5	99
(Ribosomal_L16);(Ribosomal_L21e)	1	33	45	37	50	0	214	9	7	89
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	42	55	62	75	0	257	11	5	68
(ubiquitin);(Viral_protease)	1	5	6	6	7	29	938	100	100	83
(CSN8_PSD8_EIF3K);(TPR_2)_(PCI)_(Rpn3_C)	1	5	5	8	8	0	1956	100	0	62
(DSS1_SEM1);(TPR_2)_(PCI)_(Rpn3_C)	1	5	5	7	7	89	975	100	0	71
(Mis12);(Nnf1)	1	5	5	5	5	0	3366	100	100	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_5);(RNA_pol_Rpb6)	1	7	7	7	7	13	2030	100	100	100
(DUF331);(Ribosom_S12_S23)	1	6	6	7	7	10	400	100	33	86
(DUF3585);(Ras)	1	5	5	5	5	42	913	100	80	100