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PDBfam
Clusters with M>=5,SeqId<90 and pair Pfam Architecture
Pfam Architecture
Cluster#
#CFs/Cluster
#Entries/Cluster
#CFs/Group
#Entries/Group
Minimum Seq Identity
Surface Area
In PDBBA(%)
In PISABA(%)
CFs Cluster/Group(%)
(Ras);(RhoGEF)_(PH)
1
7
7
8
8
19
1479
100
100
88
(GATase);(His_biosynth)
1
5
8
5
8
36
1082
88
75
100
(GDNF)_(GDNF);(TGF_beta)
1
7
7
7
7
15
744
100
71
100
(GDNF)_(GDNF)_(GDNF);(RET_CLD1)_(Cadherin)_(RET_CLD3)_(RET_C LD4)
1
5
5
7
7
34
933
100
20
71
(GDNF)_(GDNF)_(GDNF);(TGF_beta)
1
5
5
7
7
42
832
100
40
71
(CI-B14_5a);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_F e4S4)_(Molybdopterin)_(NADH_dhqG_C)
1
6
6
7
7
86
460
100
33
86
(Proton_antipo_M);(Proton_antipo_N)_(Proton_antipo_M)
1
7
12
7
12
19
1718
100
58
100
(DAP3);(MRP-L46)
1
16
16
18
18
85
299
100
0
89
(DAP3);(Ribosomal_S11)
1
5
5
5
5
4
492
100
0
100
(L51_S25_CI-B8);(Ribosomal_L4)
1
5
5
5
5
3
1530
100
0
100
(MRP-S27);(Ribosomal_L19)
1
14
14
14
14
81
529
100
0
100
(MRP-S28);(Ribosomal_S5)_(Ribosomal_S5_C)
1
7
7
7
7
30
1496
86
0
100
(MRP-S32);(TGS)_(tRNA_SAD)
1
17
17
17
17
73
398
100
6
100
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)
2
15
15
33
34
84
591
100
7
45
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)
3
15
15
33
34
84
607
100
7
45
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)
4
13
13
33
34
84
425
100
8
39
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)
5
13
13
33
34
84
346
100
8
39
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)
6
12
12
33
34
84
298
100
8
36
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)
7
11
11
33
34
84
332
100
9
33
(Ribosomal_L21p);(Ribosomal_L30)
1
9
9
9
9
31
642
89
11
100
(Ribosomal_S10);(Ribosomal_S5)_(Ribosomal_S5_C)
1
7
7
7
7
36
1513
86
0
100
(Ribosomal_S11);(Ribosomal_S9)
1
6
6
6
6
4
1264
100
0
100
(GP41);(V-set_2)_(C1-set)
1
14
24
36
61
76
353
100
42
39
(GP41);(V-set_2)_(C1-set)
2
8
12
36
61
0
630
100
92
22
(A2M_recep)_(NTR);(MG1)_(MG2)_(MG3)_(MG4)_(A2M_BRD)
1
8
12
8
12
25
756
100
100
100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L10)_(RL10P_insert)
1
11
11
11
11
56
568
100
0
100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_S30)
1
10
10
16
16
58
271
100
0
62
(AAA)_(Cdc6_C);(AAA_16)_(ORC4_C)
2
6
6
13
13
46
2180
100
33
46
(AAA)_(Cdc6_C);(AAA_16)_(ORC5_C)
2
6
6
13
13
34
458
100
33
46
(AAA_16)_(ORC4_C);(AAA_16)_(ORC5_C)
1
24
24
24
24
10
2674
100
8
100
(AAA_16)_(ORC4_C);(ORC3_N)_(ORC3_ins)_(ORC_WH_C)
1
16
16
17
17
11
279
100
6
94
(AAA_16)_(ORC5_C);(ORC2)
1
23
23
23
23
21
883
100
4
100
(AAA_16)_(ORC5_C);(ORC3_N)_(ORC3_ins)_(ORC_WH_C)
1
18
18
18
18
11
1823
100
6
100
(ORC3_N)_(ORC3_ins)_(ORC_WH_C);(ORC6)
1
7
7
8
8
0
676
100
0
88
(BCAS2);(Myb_DNA-binding)_(Myb_DNA-binding)_(Myb_Cef)
1
11
11
11
11
25
1747
100
18
100
(Cwf_Cwc_15);(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EF G_IV)_(EFG_C)
1
12
12
12
12
43
566
100
8
100
(Cwf_Cwc_15);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-s nRNA_bdg)_(PRP8_domainIV)_(JAB)_(PROCT)
1
18
18
18
18
22
1596
100
17
100
(Cwf_Cwc_15);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )
1
15
15
15
15
3
1400
100
13
100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(LSM)
1
34
34
34
34
34
490
100
18
100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_bdg)_(P RP8_domainIV)_(JAB)_(PROCT)
1
17
17
17
17
34
5834
100
12
100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
16
16
16
16
45
994
100
19
100
(G10);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_bd g)_(PRP8_domainIV)_(JAB)_(PROCT)
1
13
13
13
13
54
1461
100
15
100
(G10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
2
11
11
26
26
42
910
100
9
42
(Pro_isomerase);(SKIP_SNW)
1
10
10
10
10
3
968
100
10
100
(Pro_isomerase);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
11
11
11
11
42
732
100
9
100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
12
12
20
20
42
794
100
8
60
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
18
18
18
18
2
1245
100
17
100
(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(WD40)
1
10
10
10
10
42
930
100
0
100
(HECT);(ubiquitin)
1
7
7
13
14
51
854
86
86
54
(HECT);(ubiquitin)
2
5
6
13
14
46
746
100
33
38
(cwf21);(MIF4G)_(MA3)
1
8
8
8
8
0
339
100
0
100
(cwf21);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_ bdg)_(PRP8_domainIV)_(JAB)_(PROCT)
1
14
14
14
14
0
1196
100
14
100
(Isy1);(Saf4_Yju2)
1
7
7
7
7
3
758
100
0
100
(Mago_nashi);(RRM_1)
1
15
15
15
15
0
1187
100
67
100
(MIF4G)_(MA3);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6- snRNA_bdg)_(PRP8_domainIV)_(JAB)_(PROCT)
1
5
5
5
5
28
1919
100
20
100
(RRM_1);(SKIP_SNW)
1
17
17
17
17
21
1283
100
0
100
(Bud13);(RRM_1)
1
12
13
12
13
1
1106
100
8
100
(G10);(RRM_1)
1
6
6
7
7
21
213
100
0
86
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)_(C1-set)
1
8
10
12
14
13
694
100
40
67
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)
1
71
71
72
72
42
1698
100
15
99
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)
2
69
69
72
72
42
301
100
16
96
(eIF-6);(NOG1_N)_(NOG1)_(NOGCT)
1
12
12
12
12
46
2319
100
17
100
(eIF-6);(Ribosomal_L14)
1
38
38
38
38
60
833
100
37
100
(eIF-6);(Ribosomal_L24e)
1
9
9
10
10
23
459
100
33
90
(eIF-6);(Ribosomal_L3)
1
22
22
22
22
61
253
100
32
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L34e)
1
5
5
5
5
84
464
100
0
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L7Ae)
1
5
5
5
5
71
465
100
0
100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L19e)
1
9
9
9
9
46
377
100
11
100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L22)
1
8
8
8
8
46
533
100
12
100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L22e)
1
10
10
10
10
46
883
100
10
100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L24e)
1
5
5
5
5
46
2380
100
0
100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L3)
1
12
12
12
12
46
638
100
17
100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L31e)
1
10
10
10
10
46
316
100
10
100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L39)
1
10
10
10
10
46
919
100
10
100
(Peptidase_M24);(Ribosomal_L23eN)_(Ribosomal_L23)
1
20
20
20
20
26
504
100
30
100
(Ribosomal_L1);(Ribosomal_L36e)
1
10
10
20
20
25
336
100
10
50
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)
1
21
34
23
36
8
342
0
0
91
(NGP1NT)_(MMR_HSR1);(NOG1_N)_(NOG1)_(NOGCT)
1
6
6
6
6
46
1216
100
17
100
(Ribosomal_L7Ae);(WD40)_(WD40)
1
21
21
21
21
33
467
100
5
100
(AARP2CN)_(RIBIOP_C);(Ribosom_S12_S23)
1
6
6
6
6
30
670
100
83
100
(Ribosomal_L7Ae);(S4)
1
18
18
18
18
61
256
100
6
100
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)
1
105
105
109
109
5
585
98
7
96
(KH_8)_(KH_1);(Ribosomal_S11)
1
17
17
17
17
50
930
100
29
100
(Brix);(MMR_HSR1)_(AARP2CN)_(RIBIOP_C)
1
12
12
12
12
49
261
100
0
100
(Brix);(Mpp10)
1
25
25
27
27
32
1362
100
4
93
(Brix);(Nop14)
1
13
13
13
13
24
993
100
0
100
(Brix);(Ribosomal_S9)
1
22
22
22
22
58
312
100
5
100
(Brix);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)
1
16
16
16
16
55
338
100
6
100
(CBF);(EMG1)
1
13
13
15
15
67
386
100
0
87
(CBF);(Ribosomal_S13)
1
9
9
9
9
35
347
100
0
100
(CBF);(WD40)_(Utp12)
1
14
14
14
14
67
892
100
0
100
(CBF);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)
1
15
15
15
15
30
608
100
0
100
(DUF1726)_(Helicase_RecD)_(GNAT_acetyltr_2)_(tRNA_bind_2);(P ALB2_WD40)_(NUC153)
1
12
12
12
12
43
525
100
0
100
(DUF1726)_(Helicase_RecD)_(GNAT_acetyltr_2)_(tRNA_bind_2);(R ibosomal_S6e)
1
9
9
9
9
63
384
100
0
100
(EMG1);(Nop14)
1
22
22
22
22
24
1159
100
5
100
(EMG1);(Ribosomal_S7)
1
21
21
21
21
69
384
100
5
100
(Fcf1);(Fibrillarin)
1
24
24
24
24
53
670
100
4
100
(Fcf1);(Ribosomal_S8)
1
23
23
23
23
52
364
100
4
100
(Fcf1);(S4)
1
27
27
27
27
52
847
100
4
100
(Fcf1);(Sas10_Utp3)_(Sas10)
1
24
24
24
24
30
679
100
4
100
(Fcf1);(WD40)_(WD40)_(WD40)_(Sof1)
1
20
20
20
20
49
564
100
5
100
(Fcf1);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)
1
10
10
10
10
53
258
100
10
100
(Fcf2);(Fibrillarin)
1
23
23
23
23
30
1460
100
4
100
(Fcf2);(MMR_HSR1)_(AARP2CN)_(RIBIOP_C)
1
12
12
12
12
31
1176
100
8
100
(Fcf2);(Sas10_Utp3)_(Sas10)
1
16
16
16
16
30
278
100
6
100
(Fcf2);(U3_assoc_6)_(TPR_14)
1
15
15
15
15
74
989
100
0
100
(Fibrillarin);(NOP5NT)_(Nop)
1
26
26
26
26
39
1319
100
4
100
(Fibrillarin);(Ribosomal_L7Ae)
1
22
22
27
30
61
456
100
5
81
(Fibrillarin);(Sas10_Utp3)_(Sas10)
1
23
23
23
23
30
1094
100
4
100
(Fibrillarin);(Utp11)
1
22
22
22
22
29
998
100
5
100
(Ge1_WD40)_(WD40)_(BING4CT);(U3_assoc_6)_(TPR_14)
1
14
14
14
14
74
388
100
0
100
(KH_8);(Ribosomal_S11)
1
18
18
21
21
69
860
100
6
86
(KH_8);(Ribosomal_S3Ae)
1
11
11
11
11
69
406
100
9
100
(KH_8);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)
1
9
9
9
9
55
323
100
11
100
(KH_8);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)
2
9
9
9
9
45
382
100
11
100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Mpp10)
1
24
24
24
24
32
1827
100
4
100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Ribosom_S12_S23)
1
27
27
27
27
49
1252
100
4
100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(RTC)_(RTC_insert)_(RTC)
1
28
28
28
28
37
2704
100
4
100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Sas10_Utp3)_(Sas10)
1
17
17
17
17
31
713
100
6
100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Utp11)
1
14
14
14
14
29
2451
100
7
100
(Mpp10);(Nop14)
1
10
10
10
10
32
615
100
0
100
(Mpp10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(Utp12)
1
16
16
23
23
32
1586
100
6
70
(Mpp10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(Utp12)
2
15
15
23
23
32
1011
100
7
65
(Nop14);(Ribosom_S12_S23)
1
19
19
19
19
24
625
100
5
100
(Nop14);(Ribosomal_S13)
1
9
9
9
9
75
506
100
0
100
(Nop14);(RTC)_(RTC_insert)_(RTC)
1
17
17
17
17
24
763
100
6
100
(NOP5NT)_(Nop);(Ribosomal_L7Ae)
1
26
26
26
26
39
502
100
4
100
(NOP5NT)_(Nop);(U3_assoc_6)_(TPR_14)
1
23
23
23
23
24
768
100
4
100
(NOP5NT)_(Nop);(U3snoRNP10)_(HEAT)_(BP28CT)
1
6
6
6
6
24
734
100
17
100
(NOP5NT)_(Nop);(Utp11)
1
18
18
18
18
29
278
100
6
100
(NOP5NT)_(Nop);(Utp14)
1
21
21
21
21
28
592
100
5
100
(NOP5NT)_(Nop);(WD40)_(WD40)
1
19
19
19
19
33
415
100
5
100
(NOP5NT)_(Nop);(WD40)_(WD40)_(WD40)_(Sof1)
1
23
23
23
23
49
902
100
4
100
(Nrap)_(Nrap_D2)_(Nrap_D3)_(Nrap_D4)_(Nrap_D5)_(Nrap_D6);(Ri bosomal_S3Ae)
1
18
18
18
18
27
1081
100
0
100
(Nrap)_(Nrap_D2)_(Nrap_D3)_(Nrap_D4)_(Nrap_D5)_(Nrap_D6);(RR M_Rrp7)_(RRP7)
1
23
23
23
23
25
2522
100
4
100
(PALB2_WD40)_(NUC153);(Ribosomal_S6e)
1
14
14
14
14
43
686
100
0
100
(PALB2_WD40)_(NUC153);(Ribosomal_S8e)
1
14
14
14
14
43
759
100
0
100
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)
1
15
15
15
15
34
1107
100
47
100
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)
2
12
12
15
15
23
759
100
50
80
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)
3
10
10
15
15
34
1017
100
40
67
(Ribosomal_L1);(RRT14)
1
7
7
7
7
63
977
100
0
100
(Ribosomal_L7Ae);(Utp11)
1
17
17
17
17
29
592
100
6
100
(Ribosomal_S13);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)
1
15
15
15
15
30
491
100
7
100
(Ribosomal_S24e);(Ribosomal_S4)_(S4)
1
9
9
9
9
31
258
100
22
100
(Ribosomal_S28e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)
1
22
22
22
22
44
607
100
5
100
(Ribosomal_S7);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)
1
20
20
20
20
30
509
100
5
100
(Ribosomal_S7);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)
1
14
14
14
14
55
234
100
7
100
(Ribosomal_S7e);(Utp14)
1
14
14
14
14
30
308
100
7
100
(Ribosomal_S7e);(WD40)_(WD40)_(WD40)_(Sof1)
1
19
19
19
19
49
417
100
5
100
(Ribosomal_S8);(WD40)_(WD40)_(WD40)_(Sof1)
1
19
19
19
19
49
441
100
5
100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)
1
21
21
21
21
55
512
100
5
100
(RNase_PH);(RNase_PH)_(RNase_PH_C)
1
17
17
17
17
3
1604
100
53
100
(RNase_PH);(RNase_PH)_(RNase_PH_C)
2
17
17
17
17
18
1162
100
53
100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)
1
17
17
17
17
28
789
100
53
100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)
2
17
17
17
17
26
1196
100
47
100
(RTC)_(RTC_insert)_(RTC);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_ (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)
1
21
21
21
21
37
473
100
5
100
(S4);(Sas10_Utp3)_(Sas10)
1
22
22
22
22
30
432
100
5
100
(U3_assoc_6)_(TPR_14);(Utp14)
1
21
21
21
21
24
1182
100
5
100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)
1
20
20
20
20
2
565
100
5
100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)_(WD40)_(Sof1)
1
20
20
20
20
24
383
100
5
100
(U3_snoRNA_assoc);(Utp11)
1
21
21
21
21
23
600
100
5
100
(U3_snoRNA_assoc);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
16
16
16
16
88
1233
100
0
100
(U3snoRNP10)_(HEAT)_(BP28CT);(WD40)_(WD40)
1
7
7
7
7
24
1274
100
14
100
(U3snoRNP10)_(HEAT)_(BP28CT);(WD40)_(WD40)_(WD40)_(Sof1)
1
5
5
5
5
24
477
100
20
100
(Utp11);(WD40)_(WD40)
1
9
9
9
9
29
372
100
0
100
(Utp14);(WD40)_(WD40)_(WD40)_(Sof1)
1
21
21
21
21
28
2311
100
5
100
(Ribosomal_S24e);(Sas10_Utp3)
1
11
11
11
11
28
424
100
0
100
(S4);(Sas10_Utp3)
1
11
11
11
11
28
1429
100
0
100
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C)
1
10
10
10
10
23
519
90
0
100
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C)
1
10
10
10
10
36
335
90
0
100
(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C);(S4)
1
5
5
5
5
36
429
80
0
100
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)
1
52
52
55
55
82
491
100
2
95
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)
1
91
91
91
91
28
644
99
11
100
(Acetyltransf_1);(TPR_1)_(NARP1)
1
5
5
5
5
30
2635
100
60
100
(SHS2_Rpb7-N)_(S1);(TFIIE_alpha)_(TF_Zn_Ribbon)
1
6
6
6
6
55
516
100
0
100
(TBP)_(TBP);(TFIIA_gamma_N)_(TFIIA_gamma_C)
1
12
13
12
13
39
419
100
31
100
(TFIIE_alpha)_(TF_Zn_Ribbon);(TFIIE_beta)_(TFA2_Winged_2)
1
7
7
7
7
11
1318
100
14
100
(TFIIF_alpha);(TFIIF_beta_N)_(TFIIF_beta)
1
11
11
11
11
87
1960
100
9
100
(ACR_tran);(HlyD_D23)
1
7
7
7
7
58
1248
100
71
100
(ACR_tran);(HlyD_D23)
2
7
7
7
7
58
733
100
71
100
(ACR_tran);(HlyD_D23)
3
6
6
7
7
58
242
100
67
86
(Actin);(F_actin_cap_B)
1
7
7
7
7
51
806
100
43
100
(Actin);(F-actin_cap_A)
1
9
9
9
9
51
593
100
44
100
(Actin);(F-actin_cap_A)
2
6
6
9
9
51
403
100
50
67
(C1-set);(Ig_2)_(ig)
1
7
9
8
10
81
582
100
11
88
(Ig_2)_(ig);(MHC_I)_(C1-set)
1
8
10
8
10
6
348
100
10
100
(EF-hand_1)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(EzrA)
1
9
11
9
11
33
1253
82
27
100
(EF-hand_7)_(EF-hand_7);(Myosin_head)_(IQ)
1
7
7
7
7
44
1137
100
57
100
(Actin);(RPEL)
1
6
7
6
7
28
916
100
100
100
(NusB);(Ribosomal_S10)
1
9
10
9
10
23
802
100
30
100
(EnY2);(Sgf11_N)_(Sgf11)
1
9
12
9
12
23
1362
100
92
100
(EnY2);(zf-UBP)_(UCH)
1
9
12
9
12
37
918
100
92
100
(Sgf11_N)_(Sgf11);(zf-UBP)_(UCH)
1
9
12
9
12
23
1684
100
92
100
(TAF)_(TAF6_C);(TFIID-31kDa)
1
9
9
9
9
20
1800
100
44
100
(TFIID_20kDa);(TFIID-31kDa)
1
8
8
8
8
12
634
100
38
100
(ubiquitin);(zf-UBP)_(UCH)
1
5
5
5
5
38
1718
100
60
100
(RanGAP1_C);(UQ_con)
1
6
11
6
11
81
569
100
9
100
(AdenylateSensor);(AMPKBI)
1
8
20
8
20
22
1987
100
100
100
(AMPKBI);(CBS)_(CBS)_(CBS)_(CBS)
1
5
12
5
12
88
901
100
100
100
(ECSIT);(Ribosomal_S11)
1
5
5
5
5
4
367
100
0
100
(Kunitz_legume);(Trypsin)
1
13
20
14
22
28
981
100
90
93
(Cyclin_N);(Pkinase)
1
6
6
7
13
12
1470
100
67
86
(Pkinase);(Tat)
1
5
6
5
6
14
227
100
83
100
(Cyclin_N)_(TFIIB);(Pkinase)
1
5
8
5
8
14
1022
100
75
100
(Globin);(NEAT)
1
6
6
6
6
45
624
100
50
100
(Pkinase);(RIIa)_(cNMP_binding)_(cNMP_binding)
1
6
9
6
9
36
1933
100
78
100
(POP1)_(POPLD);(Rpp20)
1
7
7
7
7
20
1252
100
0
100
(RNase_P_p30);(RNase_P-MRP_p29)
1
9
9
9
9
12
1500
100
0
100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(FAD_binding_5)_(CO_deh_flav_ C)
1
9
26
9
26
13
1187
100
100
100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(Fer2)_(Fer2_2)
1
8
23
8
23
19
2050
100
100
100
(FAD_binding_5)_(CO_deh_flav_C);(Fer2)_(Fer2_2)
1
8
23
8
23
13
1344
100
100
100
(Lipoprotein_18);(YfiO)
1
16
18
16
132
84
2209
100
83
100
(Amidase);(GatB_N)_(GatB_Yqey)
1
5
9
5
9
37
1363
100
100
100
(GatB_N)_(GatB_Yqey);(Glu-tRNAGln)
1
5
11
5
11
28
1786
100
100
100
(Aminotran_5);(NifU_N)
1
7
12
8
13
23
913
100
92
88
(Lys);(V-set)_(C1-set)
1
7
16
15
27
84
386
100
12
47
(Lys);(V-set)_(C1-set)
2
7
16
15
27
84
520
100
12
47
(ANAPC2);(ANAPC4_WD40)_(ANAPC4)
1
10
10
10
10
79
540
100
40
100
(ANAPC2);(zf-ANAPC11)
1
11
11
11
11
79
1692
100
36
100
(CDC45);(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)
1
17
17
17
17
22
768
100
47
100
(CDC45);(MCM2_N)_(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)
1
16
16
16
16
22
534
100
50
100
(CDC45);(Sld5)
1
15
15
16
16
22
265
100
47
94
(CDC45);(Sld5)_(SLD5_C)
1
13
13
13
13
25
850
100
31
100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)
1
17
17
17
17
27
574
100
47
100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)
2
17
17
17
17
15
433
100
47
100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)
3
13
13
17
17
15
362
100
46
76
(Sld5);(Sld5)_(SLD5_C)
1
15
16
15
16
6
1355
100
44
100
(Sld5);(Sld5)_(SLD5_C)
2
13
14
15
16
18
1973
100
36
87
(Sld5);(Sld5)_(SLD5_C)
4
8
9
15
16
18
259
100
56
53
(Lys);(V-set)
1
6
10
25
60
18
743
100
70
24
(Lys);(V-set)
2
5
23
25
60
78
382
100
22
20
(Lys);(V-set)
3
5
23
25
60
76
526
100
22
20
(CSN8_PSD8_EIF3K);(PCI)_(Rpn3_C)
1
51
51
51
51
10
1939
100
29
100
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)
1
31
31
32
32
66
625
100
19
97
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_I D_OB)_(AAA)_(AAA_lid_3)
1
15
15
15
15
29
2168
100
20
100
(JAB)_(MitMem_reg);(VWA_2)
1
44
44
44
44
4
609
100
20
100
(PCI)_(Rpn3_C);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEA T_2)_(RPN2_C)
1
31
31
32
32
72
594
100
19
97
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_(RPN6_C_he lix)
1
12
12
13
13
43
617
100
33
92
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)
1
58
58
58
58
37
1413
100
28
100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)
1
13
69
13
70
10
4665
100
100
100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)
2
6
32
13
70
10
422
100
100
46
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_( RPN6_C_helix)
2
7
7
19
19
43
387
100
14
37
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)
1
12
12
22
22
37
312
100
33
55
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)
2
7
7
22
22
37
839
100
14
32
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)
1
29
29
29
29
31
321
100
38
100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)
1
30
30
30
30
31
1614
100
37
100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)
2
18
18
30
30
31
257
100
39
60
(JAB)_(MitMem_reg);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)
1
9
9
16
16
66
278
100
22
56
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(ZapB)_(Prot_ATP_ID_OB)_( AAA)_(AAA_lid_3)
1
31
31
31
31
37
2701
100
35
100
(Proteasome_A_N)_(Proteasome);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)
2
5
5
19
19
61
376
100
0
26
(Proteasome_A_N)_(Proteasome);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)
3
5
5
19
19
51
503
100
0
26
(RPN6_N)_(PCI)_(RPN6_C_helix);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)
1
11
11
19
19
43
405
100
36
58
(RPN6_N)_(PCI)_(RPN6_C_helix);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)
2
6
6
19
19
43
471
100
33
32
(RPN7)_(PCI);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)
1
12
12
22
22
37
850
100
33
55
(RPN7)_(PCI);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)
2
8
8
22
22
37
324
100
25
36
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(P C_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)
1
13
13
13
13
74
685
100
8
100
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome _A_N)_(Proteasome)
1
11
11
11
11
60
297
100
27
100
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome _A_N)_(Proteasome)
2
11
11
11
11
52
644
100
27
100
(GTP_EFTU)_(GTP_EFTU_D2)_(RF3_C);(Ribosom_S12_S23)
1
8
9
8
9
72
447
100
11
100
(PCRF)_(RF-1);(Ribosomal_L11_N)_(Ribosomal_L11)
1
6
6
8
10
43
268
100
33
75
(Apocytochr_F_N)_(Apocytochr_F_C);(Cytochrom_B_C)
1
5
7
5
14
57
1143
100
100
100
(Cytochrom_B_C);(Cytochrome_B)
1
5
14
5
14
74
3094
100
100
100
(RRM_1);(Torus)_(RRM_1)
1
17
17
17
17
21
1805
100
6
100
(Arabino_trans_N)_(Arabinose_trans)_(Arabino_trans_C);(PP-bi nding)
1
7
7
7
7
41
842
100
0
100
(BBS1);(PHTB1_N)_(PHTB1_C)
1
5
5
5
5
87
2237
100
0
100
(ArfA);(PCRF)_(RF-1)
1
10
10
10
10
42
1140
100
40
100
(CENP-L);(CENP-N)
1
5
5
5
5
67
1480
100
80
100
(Phenol_Hydrox)_(YHS);(TmoB)
1
6
37
6
37
52
1322
100
100
100
(MIF4G)_(MIF4G_like)_(MIF4G_like_2);(RRM_1)
1
11
13
11
13
13
1470
100
77
100
(ArsA_ATPase);(CHD5)
1
6
7
6
7
9
516
100
57
100
(MoaE);(ThiS)
1
7
9
8
10
16
920
100
78
88
(SNAP);(Synaptobrevin)
1
5
5
7
7
9
299
100
0
71
(Synaptobrevin);(Syntaxin)_(SNARE)
1
26
29
26
30
0
1402
100
72
100
(TBP)_(TBP);(TFIIB)_(TFIIB)
1
6
8
6
8
15
1190
100
88
100
(Mt_ATP-synt_B);(Mt_ATP-synt_D)
1
43
43
44
44
3
1393
100
35
98
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(V-ATPase_G)
1
10
10
10
10
64
228
100
0
100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(vATP-synt_E)
1
19
19
20
20
15
1503
95
26
95
(ATP_synth_reg);(ATP-synt_A)
1
18
18
24
24
62
390
100
28
75
(ATP-synt_8);(ATP-synt_A)
1
25
25
25
25
4
927
100
24
100
(ATP-synt_8);(Mit_proteolip)
1
10
10
20
20
4
599
100
50
50
(ATP-synt_8);(Mt_ATP-synt_B)
1
7
7
23
23
89
294
100
57
30
(ATP-synt_A);(Mit_proteolip)
1
10
10
20
20
62
580
100
50
50
(ATP-synt_A);(WRW)
1
20
20
25
25
32
691
100
25
80
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(IATP)
1
11
11
20
20
25
425
100
36
55
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(IATP)
1
23
23
23
23
16
684
100
17
100
(ATP-synt_E);(ATP-synt_G)
1
20
20
20
20
88
646
100
30
100
(ATP-synt_E);(Mt_ATP-synt_B)
1
10
10
20
20
3
258
100
50
50
(ATP-synt_F6);(Mt_ATP-synt_B)
1
17
17
25
25
4
1255
100
41
68
(ATP-synt_F6);(Mt_ATP-synt_D)
1
14
14
23
23
87
404
100
50
61
(ATP-synt_G);(Mt_ATP-synt_B)
1
19
19
20
20
3
456
100
26
95
(ATP-synt_G);(WRW)
1
10
10
20
20
32
500
100
50
50
(Mt_ATP-synt_B);(WRW)
1
20
20
25
25
1
557
100
30
80
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)
1
56
67
61
72
5
1263
100
42
92
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_DE_N )_(ATP-synt_DE)
1
15
16
32
33
5
318
88
12
47
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_DE_N )_(ATP-synt_DE)
1
14
14
32
33
38
317
100
14
44
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_DE_N )_(ATP-synt_DE)
2
11
11
32
33
38
450
100
18
34
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)
1
22
23
30
31
5
248
96
4
73
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)
2
21
22
30
31
17
250
95
5
70
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)
1
16
26
21
31
21
677
100
85
76
(B1);(V-set)_(C1-set)
1
6
18
6
18
60
642
100
11
100
(B56);(STPPase_N)_(Metallophos)
1
5
6
5
6
67
887
100
50
100
(OTCace_N)_(OTCace);(PyrI)_(PyrI_C)
1
6
63
7
77
45
670
100
98
86
(Phage_sheath_1)_(Phage_sheath_1C);(Phage_T4_gp19)
1
5
5
5
5
46
652
100
40
100
(eRF1_1)_(eRF1_2)_(eRF1_3);(Ribosom_S12_S23)
1
5
5
5
5
34
342
100
0
100
(Ribosom_S12_S23);(RLI)_(Fer4)_(ABC_tran)_(ABC_tran)
1
7
7
7
7
43
472
100
14
100
(Ribosomal_L10)_(RL10P_insert)_(Ribosomal_60s);(Ribosomal_L1 1_N)_(Ribosomal_L11)
1
9
9
9
9
25
267
100
0
100
(Ribosomal_L13);(Ribosomal_L14e)
1
26
26
26
26
4
926
100
12
100
(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)
1
5
5
5
5
27
227
100
20
100
(Ribosomal_L6)_(Ribosomal_L6);(RLI)_(Fer4)_(ABC_tran)_(ABC_t ran)
1
8
8
8
8
51
291
100
0
100
(CSN8_PSD8_EIF3K);(PCI)
2
7
8
15
16
3
1498
100
38
47
(eIF-1a);(Ribosom_S12_S23)
1
33
33
33
33
8
388
97
18
100
(eIF-1a);(Ribosomal_S19)
1
5
5
5
5
24
352
100
0
100
(eIF-3_zeta);(Ribosomal_S28e)
1
9
9
9
9
60
545
100
0
100
(eIF-3_zeta);(Ribosomal_S7)
1
9
9
9
9
60
721
100
0
100
(eIF-3c_N)_(PCI);(PCI)
1
8
8
10
10
14
1704
100
38
80
(eIF-3c_N)_(PCI);(Ribosomal_S27e)
1
13
13
14
14
28
572
100
15
93
(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C);(S1)_(EIF_2_alpha)
1
17
17
17
17
25
688
100
24
100
(BIR);(Nbl1_Borealin_N)
1
5
6
5
6
88
1238
100
100
100
(Peptidase_C12);(ubiquitin)
1
7
9
7
9
19
1114
100
89
100
(Pescadillo_N)_(BRCT_2);(Ribosomal_L30_N)_(Ribosomal_L30)
1
13
13
13
13
89
1275
100
15
100
(Bot1p);(Ribosomal_S16)
1
7
7
7
7
23
1603
86
0
100
(Bot1p);(Ribosomal_S5)_(Ribosomal_S5_C)
1
7
7
7
7
23
978
86
0
100
(Bot1p);(Ribosomal_S8)
1
7
7
7
7
23
296
86
0
100
(DAP3);(Ribosomal_S13)
1
7
7
7
7
23
455
86
0
100
(ECH_2);(MRP-S25)
1
7
7
7
7
36
446
86
0
100
(ECH_2);(Ribosomal_S2)
1
8
8
8
8
24
561
88
0
100
(KOW);(Mitoc_mL59)
1
9
9
9
9
24
1009
89
11
100
(KOW);(MRP-L47)
1
9
9
9
9
24
1377
89
11
100
(L31);(Ribosomal_L16)
1
9
9
9
9
40
707
89
11
100
(L31);(Ribosomal_L30)
1
10
10
10
10
22
915
90
10
100
(L51_S25_CI-B8);(MRP-L20)
1
9
9
9
9
24
455
89
11
100
(Mit_ribos_Mrp51);(MRP-S25)
1
7
7
7
7
22
3228
86
0
100
(Mit_ribos_Mrp51);(Ribosomal_S18)
1
7
7
7
7
22
1384
86
0
100
(Mit_ribos_Mrp51);(Ribosomal_S2)
1
7
7
7
7
22
1214
86
0
100
(Mit_ribos_Mrp51);(Ribosomal_S21)
1
7
7
7
7
22
398
86
0
100
(Mit_ribos_Mrp51);(Sod_Fe_N)_(Sod_Fe_C)
1
7
7
7
7
22
589
86
0
100
(Mitoc_mL59);(Ribosomal_L27A)
1
9
9
9
9
33
854
89
11
100
(Mitoc_mL59);(Ribosomal_L33)
1
10
10
10
10
26
657
90
10
100
(MRP-L20);(Ribosomal_L21p)
1
9
9
9
9
24
1024
89
11
100
(MRP-L20);(Ribosomal_L22)
1
9
9
9
9
24
613
89
11
100
(MRP-L28);(Ribosomal_L31)
1
9
9
9
9
22
881
89
11
100
(MRP-L28);(Ribosomal_L5)_(Ribosomal_L5_C)
1
9
9
9
9
22
2239
89
11
100
(MRP-S25);(Ribosomal_S18)
1
7
7
7
7
27
610
86
0
100
(MRP-S25);(Ribosomal_S2)
1
7
7
7
7
36
2213
86
0
100
(MRP-S25);(Ribosomal_S5)_(Ribosomal_S5_C)
1
7
7
7
7
36
436
86
0
100
(MRP-S25);(Ribosomal_S8)
1
7
7
7
7
36
878
86
0
100
(MRP-S25);(Sod_Fe_N)_(Sod_Fe_C)
1
7
7
7
7
25
1344
86
0
100
(Ribosomal_S2);(Sod_Fe_N)_(Sod_Fe_C)
1
7
7
7
7
25
1234
86
0
100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)
1
5
10
5
10
34
666
100
100
100
(Botulinum_HA-17);(RicinB_lectin_2)_(RicinB_lectin_2)
2
5
10
5
10
34
420
100
100
100
(Peptidase_C48);(Rad60-SLD)
1
12
14
12
15
14
1026
100
86
100
(Ribosomal_L14e);(Ribosomal_L6e)
1
5
5
5
5
21
507
100
20
100
(Ribosomal_L23);(Ribosomal_L39)
1
11
71
11
71
34
276
100
1
100
(MPP6);(Rrp40_N)_(KH_6)
1
7
7
7
7
12
1379
100
14
100
(Brix);(RRS1)
1
8
8
8
8
34
2440
100
50
100
(TFIID_NTD2)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(TFII D-31kDa)
1
5
5
5
5
65
1202
100
0
100
(DIM1);(Nop)_(Prp31_C)
1
10
10
10
10
25
414
100
50
100
(Nop)_(Prp31_C);(Ribosomal_L7Ae)
1
10
10
10
10
25
502
100
50
100
(PRP4)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(Rib osomal_L7Ae)
1
8
8
8
8
32
712
100
50
100
(CBF_beta);(Runt)
1
5
13
5
13
10
1085
100
100
100
(Peptidase_S8);(potato_inhibit)
1
10
28
11
29
35
806
100
100
91
(ig)_(ig)_(ig);(MHC_I)_(C1-set)
1
7
8
7
9
88
923
88
50
100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)
2
7
8
7
9
88
599
12
25
100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)
3
7
8
7
9
88
375
0
0
100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)
4
7
8
7
9
88
597
0
0
100
(ig)_(ig)_(ig);(MHC_I)_(C1-set)
5
6
7
7
9
88
268
0
0
86
(Ig_J_chain);(V-set)_(V-set)_(V-set)_(V-set)
1
9
9
9
9
67
429
100
0
100
(Phe_tRNA-synt_N)_(tRNA-synt_2d);(tRNA_bind)_(B3_4)_(B5)_(tR NA_synthFbeta)_(FDX-ACB)
1
7
23
9
27
13
1826
100
96
78
(DUF5089);(Synaptobrevin)
1
11
14
15
19
10
319
100
93
73
(DUF5089);(Syntaxin)_(SNARE)
1
18
21
19
23
6
1501
100
95
95
(DUF5089);(TolA_bind_tri)
1
9
12
9
13
10
1430
100
92
100
(Syntaxin)_(SNARE);(TolA_bind_tri)
1
9
12
9
13
19
354
100
83
100
(Synaphin);(Synaptobrevin)
1
6
6
6
6
52
321
100
67
100
(Synaphin);(Syntaxin)_(SNARE)
1
6
6
6
6
10
271
100
67
100
(Phe_tRNA-synt_N)_(tRNA-synt_2d);(tRNA_bind)_(B3_4)_(B5)_(tR NA_synthFbeta)_(FDX-ACB)
2
6
20
9
27
13
3622
100
95
67
(VEFS-Box);(WD40)_(WD40)_(WD40)_(WD40)
1
9
12
9
12
17
640
100
50
100
(EZH2_WD-Binding)_(PRC2_HTH_1)_(preSET_CXC)_(SET);(VEFS-Box)
1
7
10
7
10
17
2621
100
70
100
(HRM)_(7tm_2);(RAMP)
1
6
6
6
6
40
1919
100
0
100
(Calici_coat);(CRPV_capsid)
1
29
30
29
30
7
4513
100
23
100
(Calici_coat);(Waikav_capsid_1)
1
5
6
5
6
21
1270
100
17
100
(CRPV_capsid);(Waikav_capsid_1)
1
6
7
6
7
18
1178
100
14
100
(HAV_VP);(Rhv)
1
14
15
14
15
5
1257
100
13
100
(HAV_VP);(Rhv)
2
11
11
14
15
7
3398
100
0
79
(Calici_coat)_(Calici_coat_C);(V-set)
1
5
5
20
24
56
725
100
100
25
(Ras);(RBD-FIP)
1
7
7
9
10
35
521
100
71
78
(EF-hand_7)_(EF-hand_7);(KCNQ_channel)
1
5
7
6
8
29
1527
100
100
83
(Reovirus_L2);(Sigma_1_2)
1
6
6
6
6
21
416
100
17
100
(Cas_Cmr3);(RAMPs)
1
8
8
8
8
24
1104
100
88
100
(Cas_Cmr5);(RAMPs)
1
8
8
8
8
21
521
100
88
100
(Cas_Cmr5);(RAMPs)
2
8
8
8
8
21
289
100
88
100
(Plexin_cytopl);(Ras)
1
5
5
7
7
40
676
100
100
71
(potato_inhibit);(Trypsin)
1
6
8
6
8
33
837
100
100
100
(CCDC23);(Vasohibin)
1
17
23
17
23
3
1216
100
96
100
(DNA_pol_B_exo1)_(DNA_pol_B)_(zf-C4pol);(PCNA_N)_(PCNA_C)
1
6
6
6
6
36
1034
100
83
100
(Sld5);(SLD5_C)
1
6
6
6
6
37
1716
100
100
100
(CDI);(Pkinase)
1
7
8
8
10
35
1104
100
100
88
(CKS);(Pkinase)
1
9
13
9
13
65
710
100
62
100
(CENP-S);(CENP-X)
1
13
16
13
16
10
2300
100
100
100
(CENP-S);(CENP-X)
2
5
5
13
16
65
221
0
0
38
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L12_N)_(Ribosomal_L12)
1
6
6
7
7
30
300
100
0
86
(Ribosom_S12_S23);(RRF)
1
7
9
7
9
10
434
100
0
100
(Chloroa_b-bind);(Photo_RC)
1
7
7
7
7
55
249
100
14
100
(Chloroa_b-bind);(PsbH)
1
7
7
7
7
55
520
100
14
100
(Chloroa_b-bind);(PSII)
1
7
7
8
8
55
862
100
14
88
(Chloroa_b-bind);(PSII)
2
5
5
8
8
52
238
100
0
62
(Chloroa_b-bind);(Ycf9)
1
8
8
8
8
52
300
100
0
100
(MSP);(PsbQ)
1
7
7
7
7
11
274
100
0
100
(MSP);(PsbW)
1
8
8
8
8
38
495
100
12
100
(Photo_RC);(PsbW)
1
11
11
11
11
26
476
100
9
100
(PsbI);(PsbW)
1
11
11
11
11
9
796
100
0
100
(PsbQ);(PSII)
1
8
8
8
8
11
1402
100
0
100
(PsbW);(PSII)
1
11
11
11
11
26
790
100
9
100
(Ras);(RasGEF_N)_(RasGEF)
1
7
48
9
58
17
1628
100
52
78
(Como_LCP);(Como_SCP)
1
9
11
9
12
37
1792
100
55
100
(QCR10);(UCR_14kD)
1
5
5
5
5
70
333
100
60
100
(QCR10);(UCR_UQCRX_QCR9)
1
5
5
5
5
81
624
100
60
100
(COX1);(COX2_TM)_(COX2)_(COX_ARM)
1
5
5
5
5
31
3284
100
80
100
(Prefoldin);(Prefoldin_2)
1
7
7
7
7
18
814
100
29
100
(Prefoldin);(Prefoldin_2)
2
7
7
7
7
19
758
100
29
100
(CsgF);(CsgG)
1
5
5
6
6
10
228
100
0
83
(CsgF);(CsgG)
2
5
5
6
6
10
1023
100
0
83
(CsgF);(CsgG)
3
5
5
6
6
10
377
100
0
83
(JAB)_(CSN5_C);(PCI)_(CSN4_RPN5_eIF3a)
1
5
6
5
6
67
509
100
50
100
(PCI);(RPN7)_(PCI)
1
5
6
5
6
3
2024
100
50
100
(PCI)_(CSN4_RPN5_eIF3a);(PCI)_(CSN7a_helixI)
1
5
6
5
6
60
941
100
50
100
(Cullin_binding);(Cullin_Nedd8)
1
5
5
5
5
27
553
60
0
100
(Ribosomal_S10);(Ribosomal_S3_C)
1
6
6
6
6
76
551
100
67
100
(T2SSI);(T2SSJ)
1
6
6
6
6
24
735
100
100
100
(Med11);(Med17)
1
10
10
12
12
8
1175
100
30
83
(Med11);(Med18)
1
6
6
6
6
11
369
100
33
100
(Med11);(Med22)
1
11
11
11
11
5
1557
100
36
100
(Med11);(Med8)
1
5
5
5
5
21
893
100
40
100
(Med17);(Med22)
1
11
11
12
12
8
1140
100
27
92
(Med17);(Med8)
1
8
8
9
9
6
1250
100
25
89
(Med18);(Med20)
1
13
13
13
13
5
1394
100
38
100
(Med18);(Med8)
1
9
9
9
9
11
607
100
22
100
(Med31);(Med7)
1
7
8
7
8
25
969
100
38
100
(ThiF)_(E1_FCCH)_(E1_4HB)_(ThiF)_(ThiF)_(UBA_e1_thiolCys)_(T hiF)_(E1_UFD);(ubiquitin)
1
11
14
12
15
10
1605
100
100
92
(DDA1);(MMS1_N)_(CPSF_A)
1
5
5
6
8
60
2363
100
80
83
(DCP1);(DCP2)_(NUDIX)
1
9
10
9
10
19
1074
100
70
100
(DCP1);(PNRC)
1
6
7
7
8
19
788
100
100
86
(DDDD);(MCU)
1
9
9
9
9
12
624
100
0
100
(DDDD);(MCU)
2
8
8
9
9
87
799
100
0
89
(LSM);(U1snRNP70_N)_(RRM_1)
1
7
7
7
7
22
303
100
14
100
(LSM);(zf-U1)
1
7
7
7
7
38
664
100
14
100
(ECR1_N)_(EXOSC1);(RNase_PH)
1
14
14
14
14
18
1019
100
64
100
(ECR1_N)_(EXOSC1);(RNase_PH)_(RNase_PH_C)
1
11
13
11
13
14
762
100
85
100
(ECR1_N)_(EXOSC1);(Rrp40_N)_(KH_6)
1
13
13
13
13
28
444
100
69
100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)
1
12
12
12
12
23
1423
100
67
100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)
2
12
12
12
12
34
1180
100
67
100
(TBP)_(TBP);(TFIIA)
1
11
12
11
12
50
343
100
25
100
(TNF);(TNFR_c6)_(TNFR_c6)
1
5
5
7
7
53
784
100
100
71
(TNF);(TNFR_c6)_(TNFR_c6)
2
5
5
7
7
53
801
80
100
71
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)
1
8
10
8
11
19
609
100
80
100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)
2
8
10
8
11
19
491
100
80
100
(Cytochrom_C1);(UCR_14kD)
1
40
75
43
81
23
395
100
76
93
(Cytochrom_C1);(UCR_hinge)
1
44
79
44
82
2
1087
100
72
100
(Cytochrom_C1);(UCR_UQCRX_QCR9)
1
41
75
44
82
0
838
100
75
93
(Cytochrom_C1);(UcrQ)
1
42
78
42
80
0
734
100
73
100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)
1
44
80
44
82
23
1262
100
71
100
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)
1
42
78
42
80
4
1008
100
74
100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)
1
28
47
40
78
26
274
100
74
70
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)
1
42
77
42
80
21
826
100
74
100
(UCR_14kD);(UcrQ)
1
38
73
41
79
17
464
100
78
93
(UCR_hinge);(UcrQ)
1
18
40
27
59
62
316
100
78
67
(DNA_primase_lrg);(DNA_primase_S)
1
5
7
5
7
7
845
71
57
100
(Myb_DNA-bind_7);(TBP)_(TBP)
1
6
6
6
6
29
620
100
83
100
(RNA_pol_I_A49);(RNA_polI_A34)
1
31
35
31
35
38
2028
100
83
100
(UDG);(UDI)
1
8
9
10
12
41
1052
100
100
80
(Sec61_beta);(Sec66)
1
5
5
17
17
26
407
100
0
29
(NMD3);(Ribosomal_L44)
1
14
14
15
15
44
568
100
29
93
(Ribosomal_L22);(zf-C2H2_2)
1
8
8
8
8
33
475
100
100
100
(Ribosomal_L39);(zf-C2H2_2)
1
8
8
8
8
33
362
100
100
100
(Ribosomal_L4)_(Ribos_L4_asso_C);(zf-C2H2_2)
1
6
6
6
6
34
246
100
100
100
(DUF1077);(EMC1_C)
1
5
5
6
6
21
1396
100
40
83
(DUF1077);(EMC3_TMCO1)
1
5
5
6
6
23
484
100
40
83
(EMC1_C);(EMC3_TMCO1)
1
6
6
7
7
21
1650
100
33
86
(EMC1_C);(TPR_19)
1
5
5
6
6
13
396
100
40
83
(EMC3_TMCO1);(EMC6)
1
6
6
7
7
23
976
100
33
86
(EMC3_TMCO1);(TPR_19)
1
6
6
6
6
13
1404
100
33
100
(TPR_19);(UPF0172)
1
5
5
5
5
45
1069
100
60
100
(Ribosomal_L23eN)_(Ribosomal_L23);(SecE)
1
6
6
8
8
63
232
100
17
75
(Gtr1_RagA);(LAMTOR)
1
5
5
7
7
10
714
100
40
71
(Ribosomal_S24e);(RS4NT)_(Ribosomal_S4e)_(KOW)_(40S_S4_C)
1
5
5
5
5
53
584
100
0
100
(Ribosomal_S6e);(RS4NT)_(Ribosomal_S4e)_(KOW)_(40S_S4_C)
1
5
5
5
5
54
373
100
0
100
(RS4NT)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)
1
5
5
5
5
57
357
100
0
100
(DUF3585);(Ras)
1
6
7
6
7
27
862
100
86
100
(DUF5601)_(VPS9);(Ras)
1
5
7
5
7
24
1042
100
100
100
(COX1);(Cytochrom_B_N_2)
1
6
6
6
6
83
905
100
17
100
(COX3);(Cytochrom_B_N_2)
1
6
6
6
6
83
660
100
17
100
(Cyt_c_ox_IV);(Cytochrom_B_N_2)
1
6
6
6
6
83
933
100
17
100
(Cytochrom_B_N_2);(Cytochrom_C)_(Cytochrome_CBB3)
1
6
6
6
6
79
2300
100
17
100
(Cytochrom_B_N_2);(DUF2631)
1
6
6
6
6
83
1674
100
17
100
(Cytochrom_B_N_2);(QcrA_N)_(Rieske)
1
6
6
6
6
80
810
100
17
100
(Cytochrom_B_N_2);(QcrA_N)_(Rieske)
2
6
6
6
6
80
4584
100
17
100
(EccE);(YukD)_(EccD)
1
5
5
5
5
13
611
100
60
100
(Gla)_(EGF)_(FXa_inhibition);(Trypsin)
1
8
76
8
76
38
904
95
97
100
(EF-hand_7);(Shal-type)_(BTB_2)_(Ion_trans)_(DUF3399)
1
5
5
5
5
68
1394
100
0
100
(EF-hand_7);(Shal-type)_(BTB_2)_(Ion_trans)_(DUF3399)
2
5
5
5
5
68
1812
100
0
100
(EGF);(Recep_L_domain)_(Furin-like)_(Recep_L_domain)_(GF_rec ep_IV)_(PK_Tyr_Ser-Thr)
1
9
9
9
9
23
1464
100
0
100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
4
801
41
5
100
(Ribosomal_60s);(Ribosomal_L10)_(RL10P_insert)_(Ribosomal_60 s)
1
5
5
5
5
10
786
80
20
100
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
74
571
41
5
100
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)
1
12
25
21
34
77
260
32
0
57
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
74
533
41
5
100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
10
418
41
5
100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
74
252
41
5
100
(S10_plectin);(Stm1_N)_(HABP4_PAI-RBP1)
1
5
7
8
10
82
205
57
14
62
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)
1
9
9
9
9
56
529
33
0
100
(Ribosomal_L7Ae);(Stm1_N)
1
6
6
8
8
87
276
50
0
75
(Ribosomal_S13);(Stm1_N)
1
9
9
9
9
56
482
33
0
100
(Ribosomal_S19);(Stm1_N)
1
9
9
9
9
56
422
33
0
100
(EGF)_(FXa_inhibition);(Trypsin)
1
11
32
11
32
10
878
100
100
100
(eIF_4EBP);(IF4E)
1
10
13
13
20
0
1056
100
100
77
(HVO_2753_ZBP);(Ribosomal_S2)
1
7
7
7
7
84
786
100
29
100
(HVO_2753_ZBP);(Ribosomal_S5)_(Ribosomal_S5_C)
1
7
7
7
7
84
727
100
29
100
(IF-2B);(S1)_(LZ3wCH)_(EIF_2_alpha)
1
9
10
9
10
47
874
100
60
100
(Ribosomal_L21e);(Ribosomal_L5e)
1
13
73
13
73
21
526
100
1
100
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)
1
11
71
11
71
38
225
100
1
100
(Ribosomal_L28e);(Ribosomal_L6e)
1
6
6
6
6
21
444
100
17
100
(FtsK_SpoIIIE)_(FtsK_SpoIIIE)_(FtsK_SpoIIIE);(T7SS_ESX1_EccB )
1
6
6
6
6
75
667
100
17
100
(FtsK_SpoIIIE)_(FtsK_SpoIIIE)_(FtsK_SpoIIIE);(YukD)_(EccD)
1
7
7
7
7
72
1633
100
29
100
(FtsK_SpoIIIE)_(FtsK_SpoIIIE)_(FtsK_SpoIIIE);(YukD)_(EccD)
2
7
7
7
7
72
1021
100
29
100
(eRF1_1)_(eRF1_2)_(eRF1_3);(HBS1_N)_(GTP_EFTU)_(GTP_EFTU_D2) _(GTP_EFTU_D3)
1
7
7
7
7
30
1763
100
0
100
(HBS1_N)_(GTP_EFTU)_(GTP_EFTU_D2)_(GTP_EFTU_D3);(Ribosom_S12 _S23)
1
5
5
5
5
33
322
100
0
100
(PPTA)_(PPTA)_(PPTA)_(PPTA)_(PPTA);(Prenyltrans)_(Prenyltran s)_(Prenyltrans)_(Prenyltrans)_(Prenyltrans)
1
5
75
5
75
19
3038
93
100
100
(FGF);(I-set)_(I-set)
1
12
15
12
15
17
1383
100
100
100
(PapC_N)_(Usher)_(PapC_C);(PapD_N)_(PapD_C)
1
5
5
5
5
26
1039
100
60
100
(FKBP_C);(FRB_dom)
1
8
12
8
12
40
365
100
25
100
(Flavi_glycop_C);(V-set)_(V-set)
1
6
6
6
6
46
914
100
0
100
(Flavi_NS2B);(Peptidase_S7)_(Flavi_DEAD)
1
5
7
6
9
68
1429
100
14
83
(fn3);(HH_signal)
1
5
6
5
6
74
667
100
17
100
(RGM_N);(TGF_beta)
1
8
8
8
9
37
553
88
88
100
(RGM_N);(TGF_beta)
2
8
8
8
9
37
415
88
88
100
(Furin-like_2);(ZNRF_3_ecto)
1
9
9
9
9
9
1004
100
89
100
(UQ_con);(zf-RING_2)
1
11
11
12
12
27
564
100
18
92
(G-alpha);(RGS)
1
9
9
9
9
33
893
100
11
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb 2_6)_(RNA_pol_Rpb2_7)
1
11
27
11
27
32
1870
100
70
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb 2_6)_(RNA_pol_Rpb2_7)
2
6
22
11
27
37
246
100
86
55
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L10)_(RL10P_insert)_(Ribosomal_60s)
1
7
7
7
7
52
550
100
0
100
(IgG_binding_B);(V-set)_(C1-set)
1
8
8
8
8
50
528
100
12
100
(Herpes_capsid);(Herpes_MCP)
1
11
11
11
11
26
1813
100
0
100
(Herpes_capsid);(Herpes_MCP)
2
11
11
11
11
26
587
100
0
100
(Herpes_UL17);(Herpes_UL25)
1
5
5
11
11
82
1431
100
0
45
(Herpes_UL17);(Herpes_UL25)
2
5
5
11
11
82
2351
100
0
45
(Hirudin);(Trypsin)
1
5
9
11
254
87
1286
100
89
45
(MMS1_N)_(CPSF_A);(WD40)_(WD40)_(WD40)
1
8
11
8
11
49
2448
100
100
100
(Histone);(PHD)_(PHD)
1
6
11
8
15
10
937
100
82
75
(RAG1_imp_bd)_(zf-C3HC4)_(zf-RAG1)_(RAG1);(RAG2)_(RAG2_PHD)
1
14
14
14
14
52
1918
100
0
100
(RAG1_imp_bd)_(zf-C3HC4)_(zf-RAG1)_(RAG1);(RAG2)_(RAG2_PHD)
2
5
5
14
14
52
589
100
0
36
(IGFBP);(Insulin)
1
5
5
5
5
58
820
100
100
100
(IL2RB_N1)_(fn3);(IL6Ra-bind)_(fn3)
1
6
6
6
6
59
893
100
50
100
(NusG)_(KOW);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1 _3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)
1
34
34
34
34
4
662
100
6
100
(Rad60-SLD);(UQ_con)
1
7
7
11
13
14
565
71
14
64
(KOW)_(Ribosomal_L14e);(KOW)_(Ribosomal_L6e)
1
10
10
10
10
21
536
100
10
100
(KOW)_(Ribosomal_L6e);(Ribosomal_L35Ae)
1
10
10
10
10
21
876
100
10
100
(Lys);(tRNA_anti-codon)
1
5
5
5
5
86
864
100
0
100
(MeMO_Hyd_G);(Phenol_Hydrox)_(YHS)
1
5
30
5
30
10
2144
100
100
100
(MHC_II_alpha)_(C1-set);(MHC2-interact)
1
5
5
10
11
15
673
100
100
50
(MHC_II_beta)_(C1-set);(MHC2-interact)
1
5
5
10
11
15
683
100
100
50
(MotA_ExbB);(MotB_plug)_(OmpA)
1
5
5
5
5
24
541
100
60
100
(Nucleoporin_C);(Nup84_Nup100)
1
5
5
5
5
5
796
100
60
100
(Pacifastin_I);(Trypsin)
1
7
7
7
7
10
902
100
100
100
(CybS);(Fer2_3)_(Fer4_17)
1
5
24
8
60
8
701
100
92
62
(CybS);(Sdh_cyt)
1
5
24
9
61
8
1428
100
92
56
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_17)
1
5
24
8
60
48
2486
100
92
62
(Fer2_3)_(Fer4_17);(Sdh_cyt)
1
5
24
8
60
19
1445
100
92
62
(Peptidase_C65);(ubiquitin)
1
10
11
10
11
10
1039
100
91
100
(PRELI);(UPF0203)
1
7
8
7
8
31
1324
100
75
100
(Hormone_recep);(SRC-1)
1
14
23
67
461
7
667
100
96
21
(Ras);(Rho_GDI)
1
6
6
7
7
53
1456
100
100
86
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
11
13
11
13
84
8022
100
62
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(zf-dskA_traR)
1
14
14
14
14
21
1680
100
14
100
(RnaseA);(V-set)
1
8
12
8
12
89
581
100
75
100
(Sec1);(Vps16_C)
1
5
5
5
5
28
2079
100
80
100
(Sec1);(Syntaxin)_(SNARE)
1
5
7
5
7
5
2175
100
100
100
(SipA_VBS);(Vinculin)
1
6
6
6
6
10
1157
100
100
100
(Stap_Strp_toxin)_(Stap_Strp_tox_C);(V-set)
1
5
9
5
9
43
626
100
44
100
(T6SS_VipA);(VipB)_(VipB_2)
1
8
8
8
8
15
2803
100
50
100
(T6SS_VipA);(VipB)_(VipB_2)
2
5
5
8
8
26
718
100
60
62
(Cytochrom_C1);(UCR_TM)_(Rieske)
1
29
59
33
71
0
793
100
75
88
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)
1
29
62
33
71
49
519
100
74
88
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)
2
25
50
33
71
49
832
86
70
76
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)
1
32
63
33
71
31
632
100
70
97
(UCR_TM)_(Rieske);(UcrQ)
1
29
62
33
71
4
577
100
74
88
(ubiquitin);(zf-C3HC4_3)
1
8
8
8
9
26
385
100
50
100
(Ribosomal_L11_N)_(Ribosomal_L11);(Ribosomal_L37)
1
17
17
22
22
23
1504
100
12
77
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)
1
29
29
29
29
38
2645
100
24
100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)
1
21
21
23
23
36
370
100
19
91
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)
2
15
15
23
23
22
394
100
27
65
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)
3
12
12
23
23
30
373
100
8
52
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)
1
48
48
52
52
26
395
100
29
92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)
2
48
48
52
52
31
392
100
27
92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)
3
43
43
52
52
60
483
100
30
83
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)
4
15
15
52
52
31
299
100
33
29
(ORC2);(ORC3_N)_(ORC3_ins)_(ORC_WH_C)
1
12
12
19
19
11
2579
100
17
63
(LRR_9);(LSM)
1
16
16
18
18
4
386
100
12
89
(Mpp10);(Ribosomal_S4)_(S4)
1
16
16
16
16
43
988
100
0
100
(HlyD_D23);(OEP)_(OEP)
1
8
8
9
9
7
527
100
75
89
(HlyD_D23);(OEP)_(OEP)
2
8
8
9
9
7
223
100
75
89
(HlyD_D23);(OEP)_(OEP)
3
8
8
9
9
19
287
100
75
89
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)
1
73
73
131
131
13
749
100
51
56
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)
2
71
71
131
131
13
1199
100
63
54
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)
3
66
66
131
131
12
599
100
9
50
(Ribosomal_L28);(Ribosomal_L9_N)
1
19
19
28
28
6
351
95
11
68
(ANAPC2);(Apc1_N)_(APC1_C)
1
11
11
11
11
79
2378
100
36
100
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)
1
33
33
57
58
31
316
100
27
58
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)
3
12
12
57
58
31
287
100
0
21
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)
4
11
11
57
58
31
286
100
36
19
(DSS1_SEM1);(PCI)_(Rpn3_C)
1
24
24
41
41
34
965
100
0
59
(DSS1_SEM1);(PCI)_(Rpn3_C)
2
16
16
41
41
31
808
100
31
39
(DSS1_SEM1);(RPN7)_(PCI)
1
32
32
57
57
0
952
100
3
56
(DSS1_SEM1);(RPN7)_(PCI)
2
25
25
57
57
37
851
100
56
44
(JAB)_(MitMem_reg);(PCI)_(Rpn3_C)
1
39
39
52
52
31
789
100
18
75
(JAB)_(MitMem_reg);(PCI)_(Rpn3_C)
2
8
8
52
52
32
1325
100
100
15
(JAB)_(MitMem_reg);(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)
1
19
19
35
35
66
329
100
16
54
(JAB)_(MitMem_reg);(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)
2
15
15
35
35
66
567
100
40
43
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
1
27
27
58
58
43
590
100
37
47
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
2
23
23
58
58
43
510
100
26
40
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
3
22
22
58
58
43
507
100
0
38
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
4
20
20
58
58
43
485
100
0
34
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
5
14
14
58
58
43
557
100
57
24
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
6
9
9
58
58
43
493
100
56
16
(JAB)_(MitMem_reg);(RPN7)_(PCI)
1
48
49
62
63
4
426
100
18
77
(JAB)_(MitMem_reg);(RPN7)_(PCI)
2
14
14
62
63
37
404
100
57
23
(PCI)_(Rpn3_C);(RPN7)_(PCI)
1
51
51
51
51
27
1261
100
29
100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(PCI)_(Rpn3_C)
1
9
9
20
20
32
511
100
44
45
(PCI)_(Rpn9_C);(VWA_2)
1
13
13
25
25
31
662
100
23
52
(Proteasome_A_N)_(Proteasome);(RPN6_N)_(PCI)_(RPN6_C_helix)
1
19
19
38
38
43
711
100
26
50
(Proteasome_A_N)_(Proteasome);(RPN6_N)_(PCI)_(RPN6_C_helix)
2
10
10
38
38
43
523
100
30
26
(PCI)_(Rpn3_C);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)
1
17
17
22
22
31
628
100
35
77
(ATP-synt_A);(Mt_ATP-synt_B)
1
32
32
39
39
6
713
100
19
82
(ATP-synt_A);(Mt_ATP-synt_D)
1
22
22
32
32
85
360
100
27
69
(ATP-synt);(IATP)
1
15
15
24
27
30
386
100
27
62
(ATP-synt_8);(Mt_ATP-synt_D)
1
11
11
23
23
4
456
100
45
48
(ATP-synt_B);(OSCP)
2
12
12
27
27
27
686
100
0
44
(Ribosomal_L14e);(Ribosomal_L18A)
1
25
25
27
27
14
1066
100
8
93
(Ribosomal_L24e);(Ribosomal_S6e)
1
82
95
93
106
1
801
76
2
88
(eIF-1a);(Ribosomal_S30)
1
7
7
10
10
46
445
86
14
70
(eIF-5_eIF-2B);(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C)
1
22
23
23
24
8
835
100
43
96
(BMC);(BMC)_(BMC)
1
6
6
7
7
16
306
100
0
86
(BMC);(BMC)_(BMC)
2
6
6
7
7
18
268
100
0
86
(Calici_coat);(Rhv)
1
27
28
28
29
9
1145
100
29
96
(CRPV_capsid);(Rhv)
1
26
26
27
27
5
1296
100
35
96
(Cohesin);(Dockerin_1)
1
8
8
17
19
8
912
100
100
47
(Cohesin);(Dockerin_1)
2
5
6
17
19
15
743
100
100
29
(CP12);(Gp_dh_N)_(Gp_dh_C)
1
9
12
9
12
32
732
100
100
100
(CP12);(Gp_dh_N)_(Gp_dh_C)
2
9
12
9
12
32
288
92
100
100
(Med17);(Med6)
1
11
11
13
13
4
707
100
18
85
(Med6);(Med8)
1
10
10
10
10
4
883
100
20
100
(FAM181);(YBD)
1
5
15
10
20
60
1197
100
40
50
(HCV_NS1);(V-set_2)_(C1-set)
1
6
6
11
11
77
481
0
0
55
(HCV_NS1);(V-set_2)_(C1-set)
2
5
5
11
11
79
646
100
100
45
(HCV_NS1);(V-set_2)_(C1-set)
3
5
5
11
11
21
1023
100
100
45
(MazE_antitoxin);(PIN)
1
6
6
9
9
24
1290
100
100
67
(OTU);(ubiquitin)
1
11
11
16
16
4
1004
100
91
69
(Ricin_B_lectin)_(Ricin_B_lectin);(RIP)
1
9
26
12
39
33
1538
100
92
75
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)
1
39
73
43
81
5
423
100
77
91
(NDUF_B4);(Peptidase_M16)_(Peptidase_M16_C)
1
7
7
7
7
75
305
100
0
100
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)
1
23
45
23
55
6
1632
100
73
100
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)
2
23
43
23
55
6
929
100
72
100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)
1
34
56
43
81
21
399
88
70
79
(Peptidase_M16)_(Peptidase_M16_C);(UCR_6-4kD)
1
13
25
16
29
77
334
100
68
81
(Tim17);(UcrQ)
1
7
7
7
7
69
355
100
0
100
(UCR_14kD);(UCR_6-4kD)
1
7
7
15
28
84
215
100
0
47
(UCR_6-4kD);(UCR_UQCRX_QCR9)
1
14
27
17
30
77
572
100
67
82
(2Fe-2S_thioredx);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Moly bdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)
1
12
12
12
12
52
830
100
33
100
(Complex1_30kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molyb dop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)
1
12
12
12
12
47
553
100
33
100
(Complex1_49kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molyb dop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)
1
12
12
12
12
52
911
100
33
100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(Fer2_4)_(NADH-G_4Fe-4S_ 3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)
1
12
12
12
12
52
1468
100
33
100
(Complex1_LYR);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdo p_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)
1
12
12
12
12
27
480
100
33
100
(ETC_C1_NDUFA4);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybd op_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)
1
11
11
11
11
29
1952
100
27
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(Fer4_7)
1
12
12
12
12
52
525
100
33
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(L51_S25_CI-B8)
1
12
12
12
12
33
1174
100
33
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(NDUFA12)
1
12
12
12
12
33
695
100
33
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(zf-CHCC)
1
12
12
12
12
31
461
100
33
100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)
1
32
62
33
71
28
876
100
71
97
(NDUF_C2);(Proton_antipo_M)
1
10
10
10
10
22
1193
100
20
100
(Ndufs5);(Proton_antipo_M)
1
9
9
9
9
23
500
100
22
100
(Oxidored_q2);(Proton_antipo_M)
1
22
27
22
27
5
1531
100
44
100
(Oxidored_q3);(Proton_antipo_M)
1
20
25
20
25
0
1098
100
48
100
(Oxidored_q4);(Proton_antipo_M)
1
18
23
20
25
21
334
100
52
90
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)
1
9
9
9
9
23
1553
100
33
100
(Proton_antipo_M);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5 _C)
1
10
10
12
12
21
1028
100
50
83
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)
1
11
11
16
21
17
1622
100
9
69
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)
2
5
10
16
21
27
466
100
70
31
(CR6_interact);(Img2)
1
5
5
10
16
76
209
100
20
50
(CR6_interact);(MRP-L51)
1
30
33
30
39
76
423
100
12
100
(CR6_interact);(Ribosomal_L27A)
1
29
32
29
38
76
1065
100
12
100
(CR6_interact);(Ribosomal_L28)
1
29
32
29
38
76
384
100
12
100
(CR6_interact);(Ribosomal_L33)
1
29
32
29
38
76
481
100
12
100
(CR6_interact);(Ribosomal_L4)
1
29
32
29
38
76
459
100
12
100
(Img2);(MRP-63)
1
30
33
30
39
72
594
100
12
100
(Img2);(Ribosomal_L27A)
1
29
32
34
43
87
1377
100
12
85
(Img2);(Ribosomal_L4)
1
39
42
44
53
4
824
98
12
89
(KOW)_(ribosomal_L24);(MRP-L27)
1
30
33
30
39
22
1353
100
12
100
(KOW)_(ribosomal_L24);(MRP-L47)
1
36
39
36
45
7
1700
100
13
100
(KOW)_(ribosomal_L24);(Ribosomal_L23)
1
31
34
36
45
81
786
100
15
86
(L51_S25_CI-B8);(MRP-63)
1
30
33
30
39
72
370
100
12
100
(L51_S25_CI-B8);(MRP-S32)
1
30
33
30
39
8
669
100
15
100
(L51_S25_CI-B8);(Ribonucleas_3_3)_(dsrm)
1
30
33
34
43
88
1492
100
15
88
(L51_S25_CI-B8);(Ribosomal_L13)
1
39
42
43
52
18
783
98
12
91
(L51_S25_CI-B8);(Ribosomal_L20)
1
31
34
31
40
22
595
100
12
100
(L51_S25_CI-B8);(Ribosomal_L21p)
1
41
44
45
54
0
1286
98
11
91
(L51_S25_CI-B8);(Ribosomal_L22)
1
9
9
13
13
25
365
89
11
69
(L51_S25_CI-B8);(Ribosomal_L50)
1
30
33
39
48
80
687
100
15
77
(L51_S25_CI-B8);(Ribosomal_L50)
2
9
9
39
48
9
753
89
11
23
(Mitoc_L55);(MRP-L28)
1
28
31
28
37
70
830
100
13
100
(Mitoc_L55);(MRP-L46)
1
28
31
28
37
70
1214
100
13
100
(Mitoc_L55);(Ribosomal_S10)
1
28
31
28
37
70
923
100
13
100
(MRP_L53);(Ribosomal_L10)
1
29
32
29
38
85
844
100
12
100
(MRP_L53);(Ribosomal_S18)
1
30
33
30
39
85
509
100
12
100
(MRP-63);(MRPL52)
1
30
33
30
39
72
385
100
12
100
(MRP-63);(Ribosomal_L10)
1
29
32
29
38
72
497
100
12
100
(MRP-63);(Ribosomal_L16)
1
29
32
29
38
72
323
100
12
100
(MRP-63);(Ribosomal_L27A)
1
29
32
29
38
72
521
100
12
100
(MRP-63);(Ribosomal_L30)
1
29
32
29
38
72
1222
100
12
100
(MRP-63);(Ribosomal_S18)
1
24
24
24
30
72
250
100
4
100
(MRP-L27);(MRP-L47)
1
36
39
40
49
22
1651
100
13
90
(MRP-L27);(Ribosomal_L23)
1
38
41
38
47
5
1457
98
12
100
(MRP-L27);(Ribosomal_L28)
1
29
32
29
38
77
503
100
12
100
(MRP-L27);(Ribosomal_L34)
1
38
41
38
47
22
438
98
12
100
(MRP-L28);(MRP-L46)
1
35
38
35
44
11
2236
100
16
100
(MRP-L28);(PBP)
1
9
9
13
13
22
876
89
11
69
(MRP-L28);(Ribosomal_S10)
1
30
33
30
39
72
1740
100
15
100
(MRP-L46);(Ribosomal_S10)
1
30
33
30
39
76
361
100
15
100
(MRP-L47);(MRP-L51)
1
29
32
29
38
82
234
100
12
100
(MRP-L47);(PDCD9)
1
29
32
29
38
83
561
100
12
100
(MRP-L47);(Ribosomal_L23)
1
45
48
45
54
2
1785
98
12
100
(MRP-L47);(Ribosomal_L28)
1
30
33
30
39
83
451
100
15
100
(MRP-L47);(Ribosomal_L34)
1
30
33
30
39
83
518
100
15
100
(MRP-L51);(Ribonucleas_3_3)_(dsrm)
1
30
33
30
39
82
368
100
12
100
(MRP-L51);(Ribosomal_L27A)
1
29
32
29
38
82
290
100
12
100
(MRP-L51);(Ribosomal_L28)
1
29
32
29
38
82
326
100
12
100
(MRP-L51);(Ribosomal_L35p)
1
29
32
29
38
80
399
100
12
100
(MRP-L51);(Ribosomal_L4)
1
29
32
29
38
82
1829
100
12
100
(MRPL52);(PBP)
1
10
10
15
21
81
503
100
10
67
(MRPL52);(Ribosomal_L20)
1
29
32
29
38
81
394
100
12
100
(MRPL52);(Ribosomal_L21p)
1
31
34
31
40
7
668
100
12
100
(MRPL52);(Ribosomal_L30)
1
29
32
31
40
81
1056
100
12
94
(MRP-S32);(Ribonucleas_3_3)_(dsrm)
1
29
32
29
38
69
680
100
16
100
(MRP-S32);(Ribosomal_L13)
1
29
32
29
38
30
294
100
12
100
(MRP-S32);(Ribosomal_L20)
1
28
31
28
37
69
866
100
13
100
(MRP-S32);(Ribosomal_L21p)
1
28
31
28
37
69
809
100
13
100
(MRP-S32);(Ribosomal_L22)
1
29
32
29
38
69
413
100
12
100
(PBP);(RF-1)
1
31
34
31
40
77
958
100
12
100
(PBP);(Ribosomal_L18p)
1
30
33
30
39
88
2744
100
12
100
(PBP);(Ribosomal_L27)
1
29
32
36
45
87
1811
100
12
81
(PBP);(Ribosomal_L27A)
1
29
32
34
43
88
255
100
12
85
(PBP);(Ribosomal_L35p)
1
29
32
29
38
80
1116
100
12
100
(PBP);(Ribosomal_S10)
1
30
33
30
39
76
644
100
12
100
(PDCD9);(Ribosomal_L17)
1
27
30
27
36
82
368
100
13
100
(PDCD9);(Ribosomal_L2)_(Ribosomal_L2_C)
1
29
32
29
38
85
777
100
12
100
(PDCD9);(Ribosomal_L23)
1
29
32
29
38
81
532
100
12
100
(PDCD9);(Ribosomal_L28)
1
29
32
29
38
83
825
100
12
100
(RF-1);(Ribosomal_L18p)
1
28
31
28
37
77
446
100
13
100
(RF-1);(Ribosomal_L27A)
1
30
33
30
39
77
1553
100
12
100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L13)
1
33
36
33
42
14
807
97
11
100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L20)
1
29
32
29
38
87
374
100
12
100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L21p)
1
29
32
29
38
77
319
100
12
100
(Ribosomal_L10);(Ribosomal_L16)
1
32
35
32
41
85
1231
100
14
100
(Ribosomal_L10);(Ribosomal_L37)
1
16
16
16
22
76
255
100
6
100
(Ribosomal_L10);(Ribosomal_S18)
1
29
32
30
39
85
236
100
9
97
(Ribosomal_L13);(Ribosomal_L22)
1
43
46
48
57
21
523
98
13
90
(Ribosomal_L13);(Ribosomal_S18)
1
30
33
30
39
85
2360
100
12
100
(Ribosomal_L16);(Ribosomal_L30)
1
31
34
31
40
81
427
100
15
100
(Ribosomal_L16);(Ribosomal_L37)
1
27
29
28
37
20
393
100
10
96
(Ribosomal_L17);(Ribosomal_L19)
1
29
32
29
38
80
637
100
16
100
(Ribosomal_L17);(TGS)_(tRNA_SAD)
1
27
30
27
36
89
746
100
13
100
(Ribosomal_L20);(Ribosomal_L22)
1
31
34
31
40
86
273
100
15
100
(Ribosomal_L21p);(Ribosomal_S18)
1
30
33
30
39
77
526
100
12
100
(Ribosomal_L22);(TGS)_(tRNA_SAD)
1
30
33
30
39
78
357
100
12
100
(Ribosomal_L27);(Ribosomal_S10)
1
30
33
30
39
76
395
100
12
100
(Ribosomal_L3);(TGS)_(tRNA_SAD)
1
30
33
30
39
82
575
100
12
100
(Ribosomal_L32p);(TGS)_(tRNA_SAD)
1
29
32
29
38
85
256
100
12
100
(Ribosomal_L4);(Ribosomal_L50)
1
29
32
38
47
80
1054
100
12
76
(Ribosomal_L4);(Ribosomal_L50)
2
9
9
38
47
9
1602
89
11
24
(G-alpha);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
8
8
8
8
51
1170
100
50
100
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
19
29
19
31
31
2229
100
79
100
(LRR_9);(RRM_1)
1
23
23
23
23
24
549
100
13
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_5);(RNA_pol_Rpb6)
1
9
17
11
19
80
2102
100
71
82
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)
1
101
114
101
114
2
491
82
15
100
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
93
106
95
108
35
243
80
14
98
(Ribosomal_L22);(Ribosomal_L6e)
1
6
6
7
7
82
266
100
0
86
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)
1
30
30
33
33
47
219
90
17
91
(Ribosomal_L32e);(Ribosomal_L6e)
1
95
108
95
108
2
511
81
15
100
(Ribosomal_L35Ae);(Ribosomal_L6e)
1
108
121
108
121
2
859
83
15
100
(Ribosomal_S19e);(Ribosomal_S7)
1
7
7
11
11
79
265
100
43
64
(Ribosomal_S17e);(Ribosomal_S2)
1
74
87
74
87
2
955
75
8
100
(Ribosomal_S2);(Ribosomal_S21e)
1
75
88
75
88
0
1506
75
9
100
(ABC_tran);(FecCD)
1
6
8
6
8
22
1097
100
100
100
(ABC_tran);(STAS_2)
1
13
13
19
19
25
824
100
46
68
(ABC_tran);(STAS_2)
2
13
13
19
19
25
316
92
46
68
(MlaD);(MlaE)
1
16
16
17
17
41
563
100
25
94
(MlaD);(MlaE)
2
15
15
17
17
41
951
100
27
88
(MlaD);(MlaE)
3
13
13
17
17
48
327
100
23
76
(MlaD);(MlaE)
4
7
7
17
17
48
386
100
29
41
(ABC_tran)_(OB_MalK)_(TOBE_2);(BPD_transp_1)
1
7
17
7
17
12
823
100
94
100
(IL12p40_C)_(fn3);(IL23)
1
11
11
11
11
13
955
100
100
100
(RNA_POL_M_15KD)_(TFIIS_C);(TFIIF_alpha)
1
10
12
13
15
19
276
100
8
77
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)
1
23
26
23
26
33
2087
100
19
100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)
1
23
26
23
26
33
1743
100
15
100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_alpha)
1
19
21
19
21
17
1204
100
10
100
(ACR_tran);(Ank)_(Ank_2)_(Ank_2)
1
7
44
7
46
62
287
100
39
100
(ACR_tran);(Ank)_(Ank_2)_(Ank_2)
2
7
44
7
46
62
816
100
39
100
(F_actin_cap_B);(F-actin_cap_A)
1
24
28
24
28
10
3543
100
75
100
(Actin);(Myosin_N)_(Myosin_head)
1
6
6
6
6
38
710
100
0
100
(Actin);(WH2)
1
9
11
9
11
27
996
100
100
100
(ecTbetaR2);(TGF_beta)
1
5
5
5
5
76
486
80
60
100
(ETF);(ETF)_(ETF_alpha)
1
12
18
12
18
9
3189
100
94
100
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)
1
11
17
11
17
21
1231
100
82
100
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)
2
5
11
11
17
82
495
0
0
45
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_Penton_B)
1
8
8
9
9
63
1273
100
12
89
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PIX)
1
6
6
7
7
27
991
100
17
86
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PIX)
2
5
5
7
7
48
1249
100
20
71
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)
1
8
8
8
8
52
800
100
12
100
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)
2
8
8
8
8
52
473
100
12
100
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)
3
8
8
8
8
52
1422
100
12
100
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)
4
7
7
8
8
52
1307
100
14
88
(Adeno_hexon)_(Adeno_hexon_C);(Adeno_PVIII)
5
5
5
8
8
79
778
100
20
62
(Adeno_PVIII);(Hex_IIIa)
1
6
6
7
7
73
1334
100
17
86
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)
1
8
16
8
16
41
419
100
94
100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)
2
8
16
8
16
41
691
100
94
100
(AlaDh_PNT_N)_(AlaDh_PNT_C);(PNTB)
3
5
13
8
16
44
379
0
0
62
(Alba);(Rpp20)
1
10
10
10
10
7
805
100
30
100
(RNase_P_p30);(RNase_P_Rpp14)
1
11
11
11
11
10
951
100
18
100
(RNase_P_p30);(RNase_P_Rpp14)
2
11
11
11
11
10
671
100
18
100
(Antistasin);(Trypsin)
1
6
6
6
6
24
625
100
100
100
(SecE);(SecY)
1
8
8
11
11
11
1693
100
62
73
(Ras);(RBD)
1
7
9
7
10
51
583
100
33
100
(ATP-synt_S1);(Renin_r)
1
13
13
13
13
83
624
100
0
100
(ATP-synt_A);(ATP-synt_B)
1
38
38
41
49
4
1483
100
3
93
(ATP-synt_A);(ATP-synt_B)
2
15
15
41
49
5
1072
100
0
37
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_B)
1
19
19
37
45
21
672
100
5
51
(B);(C1-set)_(C1-set)
1
9
13
9
13
56
715
92
69
100
(Bac_export_1);(Bac_export_3)
1
14
14
14
14
15
1046
100
43
100
(Bac_export_1);(FliP)
1
14
14
14
14
15
1942
100
43
100
(Bac_export_1);(FliP)
2
14
14
14
14
15
2123
100
43
100
(Bac_export_3);(FliP)
1
14
14
14
14
22
1178
100
43
100
(PrgH);(YscJ_FliF)
1
12
12
14
14
19
912
100
0
86
(Cullin)_(Cullin_Nedd8);(zf-rbx1)
1
20
20
20
20
20
1960
100
80
100
(E1_dh);(Transket_pyr)_(Transketolase_C)
1
8
39
8
39
6
1735
100
100
100
(E1_dh);(Transket_pyr)_(Transketolase_C)
2
8
39
8
39
26
1615
100
100
100
(Nop);(Ribosomal_L7Ae)
1
12
15
12
15
24
607
100
73
100
(TFIIA);(TFIIA_gamma_N)_(TFIIA_gamma_C)
1
23
26
23
26
16
2264
100
27
100
(Inhibitor_I9);(Peptidase_S8)
1
15
28
16
31
6
1217
100
100
94
(RbpA);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)
1
17
22
17
22
79
1302
100
36
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4 )
1
6
8
6
8
79
2326
100
38
100
(Csm2_III-A);(HD)_(Csm1_B)_(Csm1_B)
1
9
9
9
9
36
548
100
0
100
(Csm2_III-A);(RAMPs)
1
17
17
19
19
19
503
100
0
89
(Csm2_III-A);(RAMPs)
2
17
17
19
19
18
531
100
0
89
(Csm2_III-A);(RAMPs)
3
11
11
19
19
36
286
100
0
58
(HD)_(Csm1_B)_(Csm1_B);(RAMPs)
1
9
9
9
9
41
331
100
0
100
(HD)_(Csm1_B)_(Csm1_B);(RAMPs)
2
9
9
9
9
41
404
100
0
100
(Me-amine-dh_H);(Me-amine-dh_L)
1
16
66
16
69
12
1513
100
95
100
(Me-amine-dh_H);(Me-amine-dh_L)
2
16
66
16
69
12
1149
94
95
100
(F-box-like);(Skp1_POZ)_(Skp1)
1
13
14
13
14
4
1234
100
93
100
(Copper-bind);(Me-amine-dh_L)
1
5
10
8
13
62
486
100
90
62
(COX2-transmemb)_(COX2);(CoxIIa)
1
6
30
6
36
17
852
90
100
100
(Csm4_C);(RAMPs)
1
11
11
11
11
21
1507
100
0
100
(SH2)_(SOCS_box);(Skp1_POZ)
1
8
9
8
9
31
915
100
100
100
(SH2)_(SOCS_box);(ubiquitin)
1
5
6
7
8
31
205
100
100
71
(Cyclin_N)_(Cyclin_C_2);(Pkinase)
1
8
9
8
9
26
1261
100
56
100
(Med21);(Med7)
1
6
7
6
7
24
1734
100
43
100
(Med26)_(TFIIS_M)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2 )_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_po l_Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
8
8
8
8
29
2397
100
12
100
(Cys_knot);(Hormone_6)
1
5
7
5
7
9
2136
100
100
100
(Cystatin);(Peptidase_C1)
1
6
7
6
7
27
894
100
100
100
(Cyt_bd_oxida_I);(Cyt_bd_oxida_II)
1
7
8
7
8
7
3249
100
62
100
(Dehydratase_LU);(Dehydratase_SU)
1
5
13
5
13
54
2717
100
77
100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Gar1)
1
5
5
5
5
19
855
100
100
100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Nop10p)
1
10
15
10
15
10
1347
100
100
100
(DNA_RNApol_7kD);(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)
1
19
20
19
20
25
592
100
45
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_L_2)
1
20
21
20
21
23
1819
100
48
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_N)
1
19
20
19
20
28
1004
100
45
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb2_1)_(RN A_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb 2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
12
12
12
12
30
1760
100
50
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_R pb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
12
12
12
12
38
8353
100
50
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb1_5)
1
8
9
8
9
45
4578
100
78
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_C)
1
8
9
8
9
41
675
100
78
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_RpbG)
1
6
7
6
7
42
1450
100
71
100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7)
1
10
11
10
11
48
979
100
55
100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_C)
1
11
12
11
12
41
1096
100
58
100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
11
12
11
12
44
973
92
58
100
(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)
1
11
12
11
12
45
505
100
50
100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);( SHS2_Rpb7-N)_(S1)
1
8
9
9
10
45
288
100
33
89
(RNA_pol_Rpb5_C);(RNA_pol_Rpb6)
1
7
8
7
8
65
375
88
75
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb2_1)_(RN A_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb 2_4)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
7
8
7
8
30
1521
100
38
100
(DnaJ)_(Sec63);(Plug_translocon)_(SecY)
1
18
18
18
18
28
1244
100
0
100
(DnaJ)_(Sec63);(Sec61_beta)
1
17
17
17
17
28
320
100
0
100
(DnaJ)_(Sec63);(Sec66)
1
18
18
18
18
26
876
100
0
100
(DnaJ)_(Sec63);(SecE)
1
16
16
17
17
28
465
100
0
94
(Plug_translocon)_(SecY);(Sec61_beta)
1
36
38
36
38
0
990
95
32
100
(Plug_translocon)_(SecY);(Sec66)
1
5
5
17
17
26
355
100
0
29
(Plug_translocon)_(SecY);(SecE)
1
42
44
42
44
3
1648
95
32
100
(V-set);(V-set_2)
1
9
11
14
16
46
702
100
82
64
(E3_binding);(Pyr_redox_2)_(Pyr_redox_dim)
1
5
5
6
6
37
313
100
20
83
(E3_binding);(Pyr_redox_2)_(Pyr_redox_dim)
2
5
5
6
6
37
404
100
20
83
(Ecotin);(Trypsin)
1
8
12
9
15
27
914
100
100
89
(EF-hand_7)_(EF-hand_7);(IQ)
1
6
9
11
15
10
1731
100
100
55
(EF-hand_1)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(Myosin_tai l_1)
1
8
8
8
8
39
2029
100
25
100
(EF-hand_7)_(EF-hand_7);(Metallophos)
1
10
14
10
14
54
2167
100
100
100
(IBN_N)_(Xpo1)_(CRM1_repeat)_(CRM1_repeat_2)_(CRM1_repeat_3) _(CRM1_C);(Ras)
1
14
57
15
72
49
1982
100
65
93
(Enterotoxin_a);(Enterotoxin_b)
1
6
15
6
15
60
399
100
67
100
(Ephrin);(Ephrin_lbd)
1
10
10
10
10
25
1100
100
100
100
(Herpes_glycop_H)_(Herpes_glycoH_C);(Phage_glycop_gL)
1
7
7
7
7
11
2312
100
86
100
(PE);(PPE)
1
6
8
6
8
26
2048
100
100
100
(FAD_binding_2)_(Succ_DH_flav_C);(Fer2_3)_(Fer4_8)
1
7
18
7
18
25
2688
100
94
100
(PsaA_PsaB);(PsaX)
1
14
19
14
19
61
404
100
58
100
(FeThRed_A);(FeThRed_B)
1
7
8
7
8
41
794
100
50
100
(FeThRed_B);(Thioredoxin)
1
5
5
5
5
26
766
100
100
100
(Rhv);(Rhv)_(Rhv)
1
7
9
13
21
62
783
100
56
54
(Rhv);(Rhv)_(Rhv)
2
7
9
13
21
50
1147
100
56
54
(Rhv);(Rhv)_(Rhv)
3
6
6
13
21
67
2897
100
83
46
(Rhv);(Rhv)_(Rhv)
4
6
6
13
21
76
1270
100
83
46
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)
1
16
30
16
33
27
1736
100
87
100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)
2
14
24
16
33
27
900
100
96
88
(Filo_glycop);(TLV_coat)
1
31
50
31
51
12
2470
98
70
100
(Filo_glycop);(TLV_coat)
2
31
50
31
51
12
410
88
68
100
(Filo_glycop);(TLV_coat)
3
31
50
31
51
13
447
88
68
100
(Fimbrial);(PapD_N)_(PapD_C)
1
17
20
17
20
5
1661
100
90
100
(Flavi_glycop_C);(V-set)_(C1-set)
1
5
5
18
19
22
431
100
0
28
(F-protein);(SH3_1)
1
7
9
7
9
13
656
100
100
100
(FXa_inhibition);(Trypsin)
1
17
152
17
163
36
902
96
99
100
(Serpin);(Trypsin)
1
9
10
10
11
24
1117
100
90
90
(MHC_II_alpha)_(C1-set);(Stap_Strp_toxin)_(Stap_Strp_tox_C)
1
7
14
10
18
31
690
100
0
70
(C1-set);(MHC_I)_(C1-set)
1
555
1128
556
1230
8
1251
100
92
100
(C1-set);(MHC_I)_(C1-set)
2
31
45
556
1230
23
269
0
9
6
(C1-set);(MHC_I)_(C1-set)
3
30
79
556
1230
75
261
0
1
5
(C1-set);(MHC_I)_(C1-set)
4
28
61
556
1230
83
262
0
0
5
(C1-set);(MHC_I)_(C1-set)
5
25
63
556
1230
19
351
0
6
4
(C1-set);(MHC_I)_(C1-set)
6
23
57
556
1230
72
334
0
0
4
(C1-set);(MHC_I)_(C1-set)
7
20
28
556
1230
85
340
0
0
4
(C1-set);(MHC_I)_(C1-set)
8
19
193
556
1230
83
209
1
0
3
(C1-set);(MHC_I)_(C1-set)
9
19
54
556
1230
67
223
0
0
3
(C1-set);(MHC_I)_(C1-set)
11
16
21
556
1230
24
256
0
5
3
(C1-set);(MHC_I)_(C1-set)
12
15
24
556
1230
65
247
0
0
3
(C1-set);(MHC_I)_(C1-set)
13
15
22
556
1230
68
370
0
0
3
(C1-set);(MHC_I)_(C1-set)
14
14
23
556
1230
67
288
0
4
3
(C1-set);(MHC_I)_(C1-set)
15
14
20
556
1230
65
250
0
0
3
(C1-set);(MHC_I)_(C1-set)
16
14
17
556
1230
65
333
0
0
3
(C1-set);(MHC_I)_(C1-set)
17
13
47
556
1230
83
509
0
4
2
(C1-set);(MHC_I)_(C1-set)
18
13
24
556
1230
17
298
0
0
2
(C1-set);(MHC_I)_(C1-set)
19
12
22
556
1230
18
243
0
9
2
(C1-set);(MHC_I)_(C1-set)
20
12
24
556
1230
65
434
0
0
2
(C1-set);(MHC_I)_(C1-set)
21
11
17
556
1230
68
241
0
0
2
(C1-set);(MHC_I)_(C1-set)
22
9
14
556
1230
22
309
0
14
2
(C1-set);(MHC_I)_(C1-set)
23
8
13
556
1230
42
253
0
8
1
(C1-set);(MHC_I)_(C1-set)
24
7
14
556
1230
40
316
0
0
1
(C1-set);(MHC_I)_(C1-set)
25
7
9
556
1230
24
261
0
0
1
(C1-set);(MHC_I)_(C1-set)
26
7
7
556
1230
24
465
0
0
1
(C1-set);(MHC_I)_(C1-set)
27
6
14
556
1230
20
252
0
14
1
(C1-set);(MHC_I)_(C1-set)
28
5
32
556
1230
29
197
0
0
1
(C1-set);(MHC_I)_(C1-set)
29
5
10
556
1230
22
304
0
0
1
(C1-set);(MHC_I)_(C1-set)
30
5
7
556
1230
73
231
0
29
1
(C1-set);(MHC_I)_(C1-set)
31
5
8
556
1230
40
243
0
0
1
(C1-set);(MHC_I)_(C1-set)
32
5
5
556
1230
22
347
0
0
1
(14-3-3);(RBD)_(C1_1)_(PK_Tyr_Ser-Thr)
1
8
8
8
8
81
748
100
0
100
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)
1
75
88
75
94
4
2619
100
38
100
(2Fe-2S_thioredx);(ETC_C1_NDUFA4)
1
8
8
37
37
31
271
100
12
22
(CI-B14_5a);(Complex1_30kDa)
1
48
48
48
48
84
1286
100
10
100
(CI-B14_5a);(Complex1_49kDa)
1
48
48
48
48
84
1491
100
10
100
(CI-B14_5a);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)
1
42
42
47
47
84
224
100
10
89
(CI-B14_5a);(ETC_C1_NDUFA5)
1
45
45
47
47
83
380
100
9
96
(CI-B14_5a);(Fer4_7)
1
48
48
48
48
84
1004
100
10
100
(CI-B14_5a);(GRIM-19)
1
44
44
47
47
9
479
100
9
94
(CI-B14_5a);(NDUFA12)
1
45
45
47
47
84
501
100
11
96
(Complex1_30kDa);(Complex1_49kDa)
1
86
94
86
94
3
2427
100
29
100
(Complex1_30kDa);(Complex1_LYR)
1
63
63
63
63
17
1042
100
19
100
(Complex1_30kDa);(ETC_C1_NDUFA4)
1
60
60
60
60
29
1336
100
13
100
(Complex1_30kDa);(ETC_C1_NDUFA5)
1
64
64
64
64
2
1429
100
19
100
(Complex1_30kDa);(Fer4_7)
1
61
61
73
81
19
269
100
20
84
(Complex1_30kDa);(Oxidored_q6)
1
81
89
83
91
18
679
100
30
98
(Complex1_49kDa);(dNK)
1
44
44
47
47
78
462
100
7
94
(Complex1_49kDa);(ESSS)
1
27
27
39
39
79
227
100
11
69
(Complex1_49kDa);(ETC_C1_NDUFA5)
1
60
60
63
63
31
428
100
20
95
(Complex1_49kDa);(Fer4_7)
1
85
93
85
93
4
1754
100
29
100
(Complex1_49kDa);(GRIM-19)
1
63
63
63
63
5
934
100
19
100
(Complex1_49kDa);(NADHdh)
1
77
82
80
85
3
1103
100
23
96
(Complex1_49kDa);(Oxidored_q2)
1
29
29
46
46
66
258
100
7
63
(Complex1_49kDa);(Oxidored_q4)
1
58
63
70
75
10
471
100
29
83
(Complex1_49kDa);(Oxidored_q5_N)_(Proton_antipo_M)
1
44
44
48
48
67
312
100
9
92
(Complex1_49kDa);(Oxidored_q6)
1
86
94
86
94
1
1462
100
29
100
(Complex1_49kDa);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
50
50
51
51
54
851
100
14
98
(Complex1_49kDa);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_ C)
1
32
32
52
52
64
379
100
12
62
(Complex1_49kDa);(zf-CHCC)
1
41
41
47
47
25
221
100
12
87
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(ETC_C1_NDUFA4)
1
56
56
59
59
29
507
100
14
95
(Complex1_LYR);(ETC_C1_NDUFA4)
1
58
58
58
58
17
665
100
14
100
(Complex1_LYR);(NDUF_B12)
1
53
53
57
57
22
460
100
13
93
(Complex1_LYR);(NDUF_B4)
1
54
54
58
58
61
1315
100
17
93
(Complex1_LYR);(NDUF_B5)
1
49
49
52
52
24
535
100
14
94
(Complex1_LYR);(NDUF_B6)
1
52
52
52
52
25
1020
100
13
100
(Complex1_LYR);(NDUF_B8)
1
50
50
53
53
21
406
100
10
94
(Complex1_LYR);(Oxidored_q4)
1
12
12
37
37
64
224
100
8
32
(Complex1_LYR);(Oxidored_q5_N)_(Proton_antipo_M)
1
58
58
62
62
22
412
100
17
94
(Complex1_LYR);(PP-binding)
1
76
84
79
87
3
746
100
25
96
(Complex1_LYR);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
62
62
62
62
22
1387
100
18
100
(COX1);(COX2_TM)_(COX2)
1
28
96
28
98
15
3548
100
69
100
(COX1);(COX3)
1
28
28
29
90
19
1997
100
39
97
(COX1);(COX4)
1
15
15
20
80
16
1180
100
27
75
(COX1);(COX5B)
1
17
17
21
81
0
1121
100
24
81
(COX1);(COX6A)
1
14
14
20
80
21
362
100
29
70
(COX1);(COX7a)
1
15
74
17
77
3
264
100
66
88
(COX1);(COX7B)
1
10
10
13
73
80
329
100
20
77
(COX1);(COX7C)
1
21
21
22
82
22
1542
100
29
95
(COX1);(COX8)
1
14
73
14
74
37
1045
100
66
100
(COX2_TM)_(COX2);(COX4)
1
13
13
19
79
16
835
100
31
68
(COX2_TM)_(COX2);(COX5A)
1
14
14
19
79
36
308
100
29
74
(COX2_TM)_(COX2);(COX6B)
1
21
21
22
82
41
926
100
29
95
(COX2_TM)_(COX2);(COX6C)
1
19
19
20
80
11
1232
100
32
95
(COX3);(COX5B)
1
21
21
22
82
14
910
100
29
95
(COX3);(COX6A)
1
18
18
21
81
5
1489
100
17
86
(COX3);(COX6B)
1
18
18
21
81
41
260
100
33
86
(COX3);(COX7a)
1
21
21
22
82
0
1267
100
29
95
(COX4);(COX5A)
1
15
15
20
80
6
1078
100
27
75
(COX4);(COX6C)
1
10
10
13
73
74
403
100
20
77
(COX4);(COX7B)
1
13
13
14
74
78
1286
100
15
93
(COX4);(COX8)
1
9
9
13
73
37
313
100
22
69
(COX5A);(COX5B)
1
8
8
15
15
35
256
100
38
53
(COX5A);(COX6C)
1
12
12
18
78
17
559
100
25
67
(COX6A);(COX6B)
1
9
9
17
77
32
220
100
44
53
(COX7C);(COX8)
1
11
11
14
74
37
664
100
18
79
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)
1
54
95
54
100
0
1621
98
67
100
(dNK);(ESSS)
1
45
45
49
49
58
413
100
13
92
(dNK);(ETC_C1_NDUFA5)
1
12
12
39
39
78
326
100
0
31
(dNK);(NDUF_C2)
1
52
52
52
52
42
383
100
13
100
(dNK);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
53
53
53
53
54
1590
100
13
100
(ESSS);(NDUF_B5)
1
51
51
52
52
24
894
100
14
98
(ESSS);(NDUFB10)
1
52
52
52
52
31
1527
100
13
100
(ESSS);(Oxidored_q5_N)_(Proton_antipo_M)
1
52
52
52
52
5
1594
100
13
100
(ETC_C1_NDUFA4);(Fer4_7)
1
55
55
58
58
30
249
100
13
95
(ETC_C1_NDUFA4);(NDUFA12)
1
6
6
7
7
26
243
100
17
86
(Fer4_7);(GRIM-19)
1
58
58
62
62
22
359
100
19
94
(Fer4_7);(NADHdh)
1
77
82
78
83
16
715
100
23
99
(Fer4_7);(NADHdh_A3)
1
56
56
60
60
7
329
100
18
93
(Fer4_7);(NDUFA12)
1
62
62
62
62
26
1933
100
19
100
(Fer4_7);(Oxidored_q6)
1
85
93
85
93
1
1280
100
29
100
(Fer4_7);(zf-CHCC)
1
63
63
63
63
25
946
100
17
100
(GRIM-19);(MWFE)
1
61
61
64
64
21
570
100
18
95
(GRIM-19);(NADHdh)
1
65
65
65
65
22
919
100
17
100
(GRIM-19);(NADHdh_A3)
1
56
56
59
59
21
576
100
20
95
(GRIM-19);(Ndufs5)
1
59
59
63
63
22
1259
100
19
94
(GRIM-19);(Oxidored_q3)
1
53
53
64
64
0
729
100
17
83
(GRIM-19);(Oxidored_q3)
2
10
10
64
64
31
833
100
20
16
(MWFE);(NADHdh)
1
65
65
65
65
2
1534
100
17
100
(MWFE);(Oxidored_q3)
1
57
57
60
60
1
294
100
12
95
(NADH_B2);(NDUF_B12)
1
56
56
56
56
21
844
100
11
100
(NADH_B2);(NDUF_B7)
1
54
54
56
56
22
701
100
11
96
(NADH_B2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
57
57
57
57
21
1450
100
11
100
(NADH_oxidored);(NDUF_B5)
1
50
50
52
52
24
636
100
14
96
(NADH_oxidored);(NDUFB10)
1
45
45
48
48
9
317
100
7
94
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)
1
51
51
52
52
67
735
100
14
98
(NADHdh);(NADHdh_A3)
1
65
65
65
65
11
659
100
17
100
(NADHdh);(NDUFA12)
1
31
31
42
42
26
227
100
10
74
(NADHdh);(Oxidored_q3)
1
80
85
83
88
0
1030
100
25
96
(NADHdh);(Oxidored_q4)
1
83
88
83
88
3
2713
100
24
100
(NADHdh);(Oxidored_q6)
1
80
85
80
85
0
1175
100
22
100
(NADHdh_A3);(Oxidored_q4)
1
56
56
64
64
22
343
100
16
88
(NDUF_B12);(PP-binding)
1
54
54
57
57
0
624
100
13
95
(NDUF_B12);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
54
54
57
57
31
808
100
13
95
(NDUF_B4);(NDUF_B8)
1
49
49
54
54
75
1799
100
8
91
(NDUF_B4);(NDUFB10)
1
51
51
54
54
9
381
100
18
94
(NDUF_B4);(Oxidored_q5_N)_(Proton_antipo_M)
1
54
54
62
62
61
1304
100
17
87
(NDUF_B4);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
54
54
61
61
61
870
100
17
89
(NDUF_B5);(NDUF_B6)
1
45
45
48
48
73
254
100
7
94
(NDUF_B5);(NDUF_C2)
1
49
49
52
52
24
682
100
14
94
(NDUF_B5);(NDUFB10)
1
52
52
52
52
9
1080
100
13
100
(NDUF_B5);(Ndufs5)
1
49
49
52
52
70
970
100
8
94
(NDUF_B5);(Oxidored_q5_N)_(Proton_antipo_M)
1
53
53
53
53
24
1176
100
13
100
(NDUF_B5);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
46
46
52
52
54
297
100
9
88
(NDUF_B5);(Tim17)
1
11
11
36
36
67
204
100
0
31
(NDUF_B6);(NDUF_B7)
1
47
47
48
48
69
774
100
6
98
(NDUF_B6);(NDUFB10)
1
48
48
52
52
9
1179
100
6
92
(NDUF_B6);(PP-binding)
1
49
49
52
52
5
525
100
14
94
(NDUF_B6);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
48
48
52
52
64
902
100
6
92
(NDUF_B7);(NDUF_B8)
1
52
52
52
52
21
1325
100
10
100
(NDUF_B7);(NDUFB10)
1
51
51
56
56
9
529
100
12
91
(NDUF_B7);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
57
57
61
61
23
868
100
18
93
(NDUF_B8);(Oxidored_q5_N)_(Proton_antipo_M)
1
50
50
53
53
21
494
100
10
94
(NDUF_B8);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
53
53
53
53
21
1644
100
9
100
(NDUF_C2);(NDUFB10)
1
53
53
53
53
9
707
100
15
100
(NDUF_C2);(Ndufs5)
1
30
30
41
41
70
225
100
7
73
(NDUF_C2);(Oxidored_q5_N)_(Proton_antipo_M)
1
43
43
57
57
67
245
100
9
75
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
53
53
53
53
42
1000
100
13
100
(NDUFA12);(Oxidored_q6)
1
59
59
62
62
26
304
100
20
95
(NDUFA12);(zf-CHCC)
1
53
53
56
56
26
630
100
15
95
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)
1
52
52
61
61
9
747
100
17
85
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)
2
6
6
61
61
27
992
100
33
10
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
52
52
61
61
9
1069
100
17
85
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
2
6
6
61
61
27
903
100
33
10
(Ndufs5);(Oxidored_q2)
1
64
64
64
64
22
495
100
17
100
(Ndufs5);(Oxidored_q3)
1
51
51
63
63
51
786
100
18
81
(Ndufs5);(Oxidored_q3)
2
9
9
63
63
28
490
100
22
14
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
52
52
52
52
54
876
100
13
100
(Oxidored_q2);(Oxidored_q3)
1
84
89
84
89
0
2816
100
25
100
(Oxidored_q2);(Oxidored_q4)
1
79
84
84
89
1
409
100
26
94
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
53
53
53
53
6
1625
100
13
100
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
57
57
61
61
6
489
100
21
93
(Oxidored_q3);(Oxidored_q4)
1
82
87
84
89
0
1805
100
25
98
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
50
50
53
53
0
753
100
14
94
(Oxidored_q3);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
5
5
6
6
19
373
100
60
83
(Oxidored_q4);(Oxidored_q6)
1
44
49
66
71
24
510
100
27
67
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)
1
53
53
53
53
54
1173
100
13
100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_N)_(Proton_ antipo_M)_(NADH5_C)
1
64
64
64
64
28
2222
100
19
100
(Oxidored_q5_N)_(Proton_antipo_M);(Tim17)
1
45
45
57
57
64
219
100
16
79
(PP-binding);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
46
46
52
52
0
290
100
15
88
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)
1
49
49
53
53
41
971
100
14
92
(Proton_antipo_M)_(NADH_dehy_S2_C);(Tim17)
1
50
50
52
52
54
516
100
14
96
(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C);(Tim17)
1
48
48
57
57
20
597
100
19
84
(2Fe-2S_thioredx);(NDUFV3)
1
47
47
47
47
70
996
100
11
100
(CHCH);(GRIM-19)
1
58
58
58
58
8
1714
100
14
100
(CHCH);(MWFE)
1
58
58
58
58
8
943
100
14
100
(CHCH);(NADHdh)
1
38
38
51
51
57
258
100
18
75
(CHCH);(NADHdh_A3)
1
51
51
55
55
39
1103
100
14
93
(CHCH);(NDUF_B5)
1
47
47
51
51
24
619
100
13
92
(CHCH);(NDUF_C2)
1
50
50
51
51
42
643
100
14
98
(CHCH);(Ndufs5)
1
48
48
55
55
57
537
100
15
87
(CHCH);(Oxidored_q5_N)_(Proton_antipo_M)
1
44
44
47
47
67
257
100
7
94
(CHCH);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
44
44
47
47
57
258
100
7
94
(Complex1_30kDa);(NmrA)
1
36
36
39
39
82
544
100
6
92
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(NDUFV3)
1
47
47
47
47
70
1135
100
11
100
(Complex1_LYR);(NmrA)
1
36
36
39
39
82
382
100
6
92
(dNK);(NADH_dh_m_C1)
1
48
48
51
51
58
584
100
15
94
(ETC_C1_NDUFA4);(NDUFV3)
1
39
39
42
42
70
261
100
10
93
(ETC_C1_NDUFA4);(NmrA)
1
36
36
39
39
82
348
100
6
92
(NADH_dh_m_C1);(NDUF_C2)
1
51
51
51
51
42
853
100
14
100
(NmrA);(Oxidored_q4)
1
10
10
32
32
73
240
100
0
31
(NmrA);(Oxidored_q6)
1
36
36
39
39
82
681
100
6
92
(NmrA);(zf-CHCC)
1
36
36
39
39
82
514
100
6
92
(2Fe-2S_thioredx);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4 )_(Molybdopterin)_(NADH_dhqG_C)
1
39
39
39
39
46
723
100
8
100
(CI-B14_5a);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Mol ybdopterin)_(NADH_dhqG_C)
1
33
33
36
36
84
493
100
9
92
(Complex1_30kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)
1
38
38
39
39
49
682
100
8
97
(Complex1_49kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)
1
39
39
39
39
54
865
100
8
100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(Fer2_4)_(NADH-G_4Fe-4S_ 3)_(Molybdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)
1
39
39
39
39
54
1307
100
8
100
(Complex1_LYR);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_( Molybdopterin)_(NADH_dhqG_C)
1
36
36
39
39
32
569
100
8
92
(ETC_C1_NDUFA4);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_ (Molybdopterin)_(NADH_dhqG_C)
1
39
39
39
39
38
1954
100
8
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(Fer4_7)
1
37
37
39
39
54
523
100
8
95
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(L51_S25_CI-B8)
1
39
39
39
39
39
1199
100
8
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(NDUFA12)
1
39
39
39
39
34
664
100
8
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(zf-CHCC)
1
38
38
39
39
31
470
100
8
97
(Complex1_30kDa);(NAD_binding_10)
1
15
15
17
17
33
592
100
33
88
(Complex1_LYR);(NAD_binding_10)
1
13
13
13
13
29
570
100
38
100
(ETC_C1_NDUFA4);(NAD_binding_10)
1
16
16
16
16
30
374
100
25
100
(NAD_binding_10);(Oxidored_q4)
1
9
9
10
10
32
326
100
33
90
(NAD_binding_10);(Oxidored_q6)
1
17
17
17
17
33
951
100
29
100
(NAD_binding_10);(zf-CHCC)
1
13
13
13
13
31
578
100
38
100
(CHCH);(MRP-S35)
1
30
30
30
36
85
378
100
7
100
(CHCH);(Ribosomal_S11)
1
5
5
11
17
79
255
100
0
45
(CHCH);(Ribosomal_S2)
1
11
11
15
21
75
242
100
18
73
(CHCH);(Ribosomal_S21)
1
30
30
33
39
85
919
100
7
91
(CHCH);(Ribosomal_S6)
1
30
30
30
36
85
509
100
7
100
(CHCH);(Ribosomal_S7)
1
30
30
33
39
85
842
100
7
91
(DAP3);(MRP-S28)
1
29
29
38
44
84
1108
100
7
76
(DAP3);(Ribosomal_S7)
1
30
30
37
43
85
917
100
7
81
(DAP3);(Ribosomal_S7)
2
7
7
37
43
23
1099
86
0
19
(DAP3);(Ribosomal_S9)
1
36
36
43
49
17
952
100
6
84
(DAP3);(Ribosomal_S9)
2
7
7
43
49
23
754
86
0
16
(DUF1713);(Ribosomal_S15)
1
30
30
30
36
5
618
100
7
100
(L51_S25_CI-B8);(MRP-S22)
1
30
30
30
36
68
462
100
7
100
(L51_S25_CI-B8);(MRP-S26)
1
30
30
30
36
75
605
100
7
100
(L51_S25_CI-B8);(Ribosomal_S16)
1
30
30
30
36
87
636
100
7
100
(L51_S25_CI-B8);(Ribosomal_S17)
1
30
30
30
36
86
1318
100
7
100
(L51_S25_CI-B8);(Ribosomal_S5)_(Ribosomal_S5_C)
1
30
30
30
36
82
537
100
7
100
(MRP-S22);(MRP-S34)
1
29
29
30
36
68
262
100
7
97
(MRP-S22);(Ribosomal_S16)
1
30
30
30
36
68
1096
100
7
100
(MRP-S22);(Ribosomal_S18)
1
30
30
30
36
68
2010
100
7
100
(MRP-S22);(Ribosomal_S5)_(Ribosomal_S5_C)
1
30
30
30
36
68
1190
100
7
100
(MRP-S23);(MRP-S35)
1
30
30
30
36
82
908
100
7
100
(MRP-S23);(Ribosomal_S18)
1
30
30
30
36
80
460
100
7
100
(MRP-S23);(Ribosomal_S2)
1
30
30
30
36
75
1791
100
7
100
(MRP-S23);(Ribosomal_S5)_(Ribosomal_S5_C)
1
30
30
30
36
82
583
100
7
100
(MRP-S24);(MRP-S28)
1
29
29
29
35
84
1364
100
7
100
(MRP-S24);(MRP-S31)
1
30
30
30
36
75
280
100
7
100
(MRP-S24);(MRP-S33)
1
30
30
30
36
83
536
100
7
100
(MRP-S24);(Ribosomal_S10)
1
30
30
30
36
13
597
100
7
100
(MRP-S24);(Ribosomal_S14)
1
30
30
30
36
86
985
100
7
100
(MRP-S24);(Ribosomal_S5)_(Ribosomal_S5_C)
1
30
30
30
36
82
516
100
7
100
(MRP-S24);(Ribosomal_S9)
1
22
22
25
31
78
235
100
9
88
(MRP-S26);(MRP-S34)
1
30
30
30
36
75
738
100
7
100
(MRP-S26);(Ribosomal_S15)
1
30
30
33
39
71
487
100
7
91
(MRP-S26);(Ribosomal_S16)
1
31
31
34
40
4
780
100
6
91
(MRP-S26);(Ribosomal_S17)
1
28
28
28
34
75
267
100
7
100
(MRP-S26);(Ribosomal_S18)
1
30
30
30
36
75
794
100
7
100
(MRP-S26);(Ribosomal_S18)
2
30
30
30
36
75
607
100
7
100
(MRP-S26);(Ribosomal_S6)
1
30
30
33
39
75
906
100
7
91
(MRP-S27);(MRP-S34)
1
28
28
28
34
81
1344
100
7
100
(MRP-S27);(Ribosomal_S18)
1
28
28
28
34
81
299
100
7
100
(MRP-S28);(MRP-S31)
1
29
29
29
35
75
1164
100
7
100
(MRP-S28);(MRP-S33)
1
29
29
36
42
83
662
100
7
81
(MRP-S28);(MRP-S33)
2
7
7
36
42
30
740
86
0
19
(MRP-S28);(Ribosomal_S10)
1
29
29
36
42
13
2111
100
7
81
(MRP-S28);(Ribosomal_S10)
2
7
7
36
42
30
2303
86
0
19
(MRP-S28);(Ribosomal_S9)
1
29
29
36
42
78
1321
100
7
81
(MRP-S28);(Ribosomal_S9)
2
7
7
36
42
30
672
86
0
19
(MRP-S31);(MRP-S33)
1
30
30
30
36
75
675
100
7
100
(MRP-S31);(Ribosomal_S10)
1
30
30
30
36
75
249
100
7
100
(MRP-S31);(Ribosomal_S14)
1
30
30
30
36
75
614
100
7
100
(MRP-S33);(Ribosomal_S14)
1
37
37
37
43
22
1211
97
5
100
(MRP-S33);(Ribosomal_S5)_(Ribosomal_S5_C)
1
30
30
30
36
82
1032
100
7
100
(MRP-S34);(Ribosomal_S16)
1
25
25
32
38
82
232
100
8
78
(MRP-S34);(Ribosomal_S18)
1
30
30
30
36
82
768
100
7
100
(MRP-S35);(Ribosomal_S18)
1
21
21
25
31
83
221
100
10
84
(MRP-S35);(Ribosomal_S2)
1
30
30
30
36
7
1103
100
7
100
(MRP-S35);(Ribosomal_S21)
1
30
30
30
36
85
699
100
7
100
(Ribosom_S12_S23);(Ribosomal_S17)
1
347
588
400
737
0
221
100
15
87
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)
1
53
53
101
107
3
276
100
17
52
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)
2
15
15
101
107
85
224
100
13
15
(Ribosomal_L13);(Ribosomal_L20)
1
455
665
456
694
0
530
100
14
100
(Ribosomal_L13);(Ribosomal_L21p)
1
6
6
17
17
23
248
100
17
35
(Ribosomal_L13);(Ribosomal_L3)
1
198
271
210
283
3
366
92
7
94
(Ribosomal_L13);(Ribosomal_L3)
2
12
12
210
283
31
870
92
17
6
(Ribosomal_L14);(Ribosomal_L19)
1
464
677
467
705
0
798
100
13
99
(Ribosomal_L14);(Ribosomal_L3)
1
211
284
224
297
0
435
93
9
94
(Ribosomal_L16);(Ribosomal_L27)
1
56
165
100
229
7
245
100
3
56
(Ribosomal_L17);(Ribosomal_L3)
1
33
36
43
52
29
597
100
14
77
(Ribosomal_L17);(Ribosomal_L32p)
1
444
653
450
684
0
377
100
13
99
(Ribosomal_L18p);(Ribosomal_L27)
1
31
34
40
50
6
1100
100
15
78
(Ribosomal_L18p);(Ribosomal_L27)
2
7
8
40
50
0
246
100
12
18
(Ribosomal_L19);(Ribosomal_L3)
1
462
675
466
704
0
724
100
13
99
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)
1
78
78
140
154
40
236
100
17
56
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_S6)
1
29
29
55
68
0
314
97
3
53
(Ribosomal_L20);(Ribosomal_L21p)
1
460
674
460
699
0
980
100
12
100
(Ribosomal_L22);(Ribosomal_L32p)
1
465
679
465
704
0
468
100
13
100
(Ribosomal_L27A);(Ribosomal_L35p)
1
441
647
452
690
0
807
100
12
98
(Ribosomal_L27A);(Ribosomal_L35p)
2
11
16
452
690
45
513
100
69
2
(Ribosomal_L27A);(Ribosomal_L4)
1
469
661
478
715
0
495
100
13
98
(Ribosomal_L27A);(Ribosomal_L4)
2
8
9
478
715
29
352
100
11
2
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)
1
302
476
326
531
0
298
100
11
93
(Ribosomal_L33);(Ribosomal_L35p)
1
9
9
24
35
31
218
100
0
38
(Ribosomal_S10);(Ribosomal_S14)
1
636
932
639
991
0
788
98
13
100
(Ribosomal_S10);(Ribosomal_S9)
1
47
47
70
83
13
394
100
4
67
(Ribosomal_S11);(Ribosomal_S18)
1
102
356
164
463
3
318
100
4
62
(Ribosomal_S11);(Ribosomal_S18)
2
31
31
164
463
27
281
100
6
19
(Ribosomal_S11);(Ribosomal_S21)
1
297
322
311
363
0
1077
100
13
95
(Ribosomal_S11);(Ribosomal_S7)
1
309
537
388
717
0
245
100
14
80
(Ribosomal_S11);(Ribosomal_S7)
2
7
10
388
717
14
203
100
0
2
(Ribosomal_S15);(Ribosomal_S17)
1
31
31
40
46
2
364
100
6
78
(Ribosomal_S15);(Ribosomal_S6)
1
33
33
43
49
2
361
100
6
77
(Ribosomal_S15);(Ribosomal_S6)
2
7
7
43
49
27
514
86
0
16
(Ribosomal_S16);(Ribosomal_S18)
1
31
31
31
37
84
574
100
6
100
(Ribosomal_S18);(Ribosomal_S21)
1
127
151
216
249
0
248
99
13
59
(Ribosomal_S18);(Ribosomal_S21)
2
30
30
216
249
1
641
100
7
14
(Ribosomal_S18);(Ribosomal_S5)_(Ribosomal_S5_C)
1
31
31
31
37
82
587
100
6
100
(Ribosomal_S18);(Ribosomal_S6)
1
440
722
443
782
0
898
100
9
99
(Ribosomal_S2);(Ribosomal_S21)
1
27
27
47
53
75
238
100
7
57
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)
1
83
96
106
119
6
516
78
10
78
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)
2
12
12
106
119
26
291
92
8
11
(Ribosomal_S2);(Ribosomal_S9)
1
40
40
40
46
24
1140
98
5
100
(Ribosomal_S21);(Ribosomal_S6)
1
27
27
33
39
19
222
100
7
82
(Ribosomal_S21);(Ribosomal_S9)
1
24
24
27
33
78
235
100
8
89
(Ribosomal_S7);(Ribosomal_S9)
1
561
827
634
962
0
458
97
11
88
(Ribosomal_S7);(Ribosomal_S9)
2
34
34
634
962
78
1400
100
6
5
(7tm_1);(G-alpha)
1
92
92
120
120
2
1186
100
3
77
(7tm_1);(G-alpha)
2
25
25
120
120
21
1127
100
0
21
(7tm_1);(IL8)
1
5
5
5
5
23
1372
100
40
100
(G-alpha);(V-set)_(V-set)
1
97
97
97
97
43
532
100
1
100
(G-alpha);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
169
170
169
170
6
1252
100
4
100
(G-gamma);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
178
187
178
188
0
2084
100
11
100
(G-alpha);(V-set)
1
102
102
102
102
1
828
99
1
100
(G-alpha);(ZapB)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
53
53
53
53
24
1358
98
4
100
(GP120);(ig)_(C2-set)
1
32
42
32
42
21
1039
100
33
100
(Ig_3)_(C1-set);(V-set)_(C1-set)
1
13
18
13
18
24
1889
100
78
100
(Ribosomal_L13);(Ribosomal_L6)_(Ribosomal_L6)
1
9
69
14
74
32
272
100
1
64
(Ribosomal_L16);(Ribosomal_L25p)
1
291
319
291
337
21
388
100
13
100
(Ribosomal_L18p);(Ribosomal_L5)_(Ribosomal_L5_C)
1
14
14
19
19
71
227
100
21
74
(Ribosomal_L23);(Ribosomal_L29)
1
437
702
437
726
0
492
100
11
100
(Ribosomal_L29);(SRP54_N)_(SRP54)_(SRP_SPB)
1
6
6
8
8
27
410
83
33
75
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)
1
223
381
250
417
0
977
100
11
89
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)
2
15
17
250
417
17
848
100
6
6
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)
1
197
210
197
210
0
763
90
12
100
(SRP14);(SRP9-21)
1
9
11
9
11
7
1354
91
36
100
(Sushi)_(Sushi);(Trypsin)
1
6
7
6
7
30
780
100
100
100
(AA_permease_2);(SLC3A2_N)_(Alpha-amylase)_(DUF3459)
1
10
10
16
16
44
1361
100
0
62
(V-set)_(C1-set);(V-set_2)_(C1-set)
1
282
326
283
330
11
1613
100
87
100
(V-set)_(C1-set);(V-set_2)_(C1-set)
2
24
32
283
330
14
366
0
0
8
(V-set)_(C1-set);(V-set_2)_(C1-set)
3
21
22
283
330
16
360
0
0
7
(V-set)_(C1-set);(V-set_2)_(C1-set)
4
8
8
283
330
36
217
0
0
3
(V-set)_(C1-set);(V-set_2)_(C1-set)
5
6
6
283
330
67
481
0
0
2
(V-set)_(C1-set);(V-set_2)_(C1-set)
6
5
11
283
330
79
377
0
0
2
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)
1
24
49
25
62
11
1626
100
73
96
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)
2
23
58
25
62
9
838
98
78
92
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)
3
22
57
25
62
10
442
98
77
88
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)
4
6
11
25
62
47
267
100
82
24
(Proteasome);(Proteasome)_(Pr_beta_C)
1
90
369
94
473
3
1140
100
74
96
(Proteasome);(Proteasome)_(Pr_beta_C)
2
78
354
94
473
13
1388
100
74
83
(Proteasome);(Proteasome)_(Pr_beta_C)
3
78
292
94
473
13
865
100
72
83
(Proteasome);(Proteasome_A_N)_(Proteasome)
1
117
408
117
506
2
491
100
67
100
(Proteasome);(Proteasome_A_N)_(Proteasome)
2
117
408
117
506
2
427
100
66
100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)
1
94
311
94
473
4
621
100
68
100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)
2
94
369
94
473
8
610
100
71
100
(MMS1_N)_(CPSF_A);(PHF5)
1
19
23
19
23
27
579
100
35
100
(MMS1_N)_(CPSF_A);(SF3b1)
1
14
14
14
14
18
1635
100
14
100
(MMS1_N)_(CPSF_A);(SF3b10)
1
26
30
26
30
22
1712
100
37
100
(SF3b1);(SF3b10)
1
13
13
13
13
18
1113
100
15
100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM_N)_(MCM_OB)_(MCM)_(MCM _lid)_(MCM6_C)
1
26
26
26
26
44
3509
100
31
100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM2_N)_(MCM_N)_(MCM_OB)_( MCM)_(MCM_lid)
1
25
25
26
26
30
3044
100
48
96
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)_(MCM6_C);(MCM2_N)_(MCM_N)_( MCM_OB)_(MCM)_(MCM_lid)
1
30
30
30
30
33
2870
100
40
100
(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol _Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)
1
19
41
19
41
80
265
100
66
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)
1
152
189
157
197
33
996
100
37
97
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
79
96
80
102
42
8100
100
11
99
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)
1
165
178
165
178
0
769
88
10
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)
1
169
182
169
182
3
940
88
10
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)
1
125
138
126
139
5
463
85
12
99
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)
1
187
200
189
202
4
664
90
10
99
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)
1
186
199
186
199
3
509
89
10
100
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)
2
139
152
186
199
2
277
86
11
75
(Ribosomal_L13);(Ribosomal_L18A)
1
186
199
186
199
27
692
89
10
100
(Ribosomal_L13);(Ribosomal_L35Ae)
1
145
148
156
169
2
239
93
11
93
(Ribosomal_L13e);(Ribosomal_L15e)
1
188
201
188
201
24
509
90
10
100
(Ribosomal_L13e);(Ribosomal_L18)
1
151
164
158
171
5
234
87
10
96
(Ribosomal_L13e);(Ribosomal_L27A)
1
188
201
188
201
2
1458
90
9
100
(Ribosomal_L13e);(Ribosomal_L29)
1
194
207
194
207
2
909
90
10
100
(Ribosomal_L13e);(Ribosomal_L36e)
1
184
197
184
197
4
642
89
10
100
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
104
104
111
111
31
219
96
7
94
(Ribosomal_L14);(Ribosomal_L24e)
1
199
273
199
273
0
525
92
9
100
(Ribosomal_L15e);(Ribosomal_L29)
1
190
203
190
203
7
355
90
10
100
(Ribosomal_L15e);(Ribosomal_L36e)
1
189
202
189
202
7
528
90
10
100
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
186
199
188
201
38
268
89
10
99
(Ribosomal_L15e);(Ribosomal_L7Ae)
1
174
247
174
247
2
938
91
9
100
(Ribosomal_L18);(Ribosomal_L27A)
1
190
203
194
207
3
863
90
9
98
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)
1
170
183
171
184
5
256
89
9
99
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
194
207
194
207
0
1113
90
10
100
(Ribosomal_L18A);(Ribosomal_L21e)
1
186
199
186
199
0
889
89
10
100
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)
1
191
204
191
204
26
474
90
10
100
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)
1
187
200
190
203
5
310
90
10
98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)
1
201
273
201
274
0
1253
92
7
100
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)
1
146
159
146
159
1
299
87
11
100
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)
1
187
200
187
200
0
598
90
10
100
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)
1
179
192
179
192
0
858
89
9
100
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)
1
162
175
170
183
4
222
88
10
95
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)
1
144
157
146
15