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PDBfam
Domain Clusters with M>=20,SeqId<90 and diff Pfam relation
Pfam Architecture
Cluster#
#CFs/Cluster
#Entries/Cluster
#CFs/Group
#Entries/Group
Minimum Seq Identity
Surface Area
In PDBBA(%)
In PISABA(%)
CFs Cluster/Group(%)
(Fe_dep_repr_C);(Fe_dep_repress)
1
27
64
27
64
14
625
100
97
100
(Formyl_trans_C);(Formyl_trans_N)
1
26
48
28
52
5
664
100
100
93
(RNA_polI_A14);(SHS2_Rpb7-N)
1
36
40
36
40
2
723
100
72
100
(IATP);(T3SS_ATPase_C)
1
24
26
24
27
20
430
100
27
100
(RNA_polI_A14);(RPA43_OB)
1
29
33
35
39
70
258
100
67
83
(NUC);(RuvC_1)
1
20
24
25
30
27
966
100
71
80
(ATP-synt_8);(Mt_ATP-synt_D)
1
22
22
25
25
56
280
100
23
88
(ATP-synt_A);(WRW)
1
25
25
25
25
80
470
100
24
100
(ATP-synt_8);(ATP-synt_A)
1
25
25
25
25
56
908
100
24
100
(HEAT_2);(ZapB)
1
23
23
23
23
2
296
100
26
100
(RPN1_RPN2_N);(ZapB)
1
22
22
23
23
2
382
100
27
96
(ATP-synt_A);(VBS)
1
27
27
27
27
51
945
100
89
100
(ATP-synt_E);(ATP-synt_G)
1
20
20
20
20
76
646
100
30
100
(ATP-synt_G);(WRW)
1
20
20
20
20
82
233
100
30
100
(ATP-synt_A);(Mit_proteolip)
1
20
20
20
20
80
288
100
30
100
(ATP-synt);(IATP)
1
24
26
24
27
25
289
100
27
100
(ATP-synt_ab_C);(IATP)
1
23
25
24
27
25
253
100
28
96
(HA2);(Helicase_C)
1
20
37
35
59
18
288
100
97
57
(HA2);(OB_NTP_bind)
1
34
57
34
58
11
1088
100
96
100
(Helicase_C);(OB_NTP_bind)
1
26
44
32
56
12
295
100
98
81
(Hormone_recep);(SRC-1)
1
23
57
25
60
17
457
96
100
92
(Hydrolase_6);(Hydrolase_like)
1
28
41
28
43
11
1204
100
100
100
(3HCDH);(3HCDH_N)
1
34
72
36
79
13
419
99
90
94
(CRPV_capsid);(Rhv)
1
27
27
28
28
7
1075
93
37
96
(Calici_coat);(CRPV_capsid)
1
29
30
29
30
12
2544
93
27
100
(Lig_chan);(SBP_bac_3)
1
23
43
23
48
5
772
100
74
100
(Lig_chan-Glu_bd);(SBP_bac_3)
1
24
49
24
54
14
2502
100
78
100
(Lig_chan-Glu_bd);(SBP_bac_3)
2
20
43
24
54
14
257
98
67
83
(MR_MLE_C);(MR_MLE_N)
1
167
287
167
288
1
1719
98
98
100
(MR_MLE_C);(MR_MLE_N)
2
92
163
167
288
3
319
80
89
55
(MR_MLE_C);(MR_MLE_N)
3
68
115
167
288
11
129
67
89
41
(Med11);(Med17)
1
20
20
20
20
11
1014
100
15
100
(Med11);(Med22)
1
21
21
21
21
11
1223
95
19
100
(Alpha-amylase);(DUF1939)
1
20
40
20
40
8
406
100
100
100
(ApbA);(ApbA_C)
1
20
23
20
23
13
859
100
100
100
(Bromo_TP);(TFIID_30kDa)
1
26
26
26
26
50
1373
100
15
100
(C2-set);(ig)
1
33
48
34
49
76
551
98
79
97
(CTP_synth_N);(GATase)
1
29
40
29
40
40
940
100
30
100
(CarD_CdnL_TRCF);(RNA_pol_Rpb2_1)
1
24
24
24
24
18
483
71
8
100
(Cbl_N);(Cbl_N2)
1
22
35
23
36
27
597
100
100
96
(Cbl_N);(Cbl_N3)
1
22
35
24
37
27
364
100
100
92
(Cbl_N2);(Cbl_N3)
1
22
35
24
38
42
665
100
100
92
(Creatinase_N);(Peptidase_M24)
1
21
33
24
38
7
490
100
100
88
(Creatinase_N);(Peptidase_M24)
2
20
30
24
38
5
536
100
100
83
(Cyclin_C);(Cyclin_N)
1
28
82
41
169
6
1381
100
99
68
(DNA_gyraseB_C);(Toprim)
1
21
35
23
45
34
1281
100
91
91
(DXP_redisom_C);(DXPR_C)
1
24
75
24
75
26
1568
100
100
100
(DXP_redisom_C);(DXP_reductoisom)
1
24
75
24
75
22
588
100
100
100
(DXP_reductoisom);(DXPR_C)
1
24
75
24
75
22
923
100
100
100
(Dynamin_M);(Dynamin_N)
1
34
41
34
42
1
1440
100
85
100
(Dynamin_M);(GED)
1
22
24
22
24
6
2980
100
79
100
(FGGY_C);(FGGY_N)
1
40
86
40
87
8
1886
99
98
100
(PDZ_2);(Trypsin_2)
1
24
40
36
67
16
264
100
95
67
(RNase_PH);(RNase_PH_C)
1
51
69
51
70
3
499
100
87
100
(Ras);(Xpo1)
1
22
82
23
83
12
436
98
66
96
(RbpA);(Sigma70_r1_2)
1
21
25
21
26
41
485
100
36
100
(RbpA);(Sigma70_r2)
1
21
25
21
26
77
316
100
36
100
(Ribosomal_L11);(Ribosomal_L37)
1
23
24
23
24
10
982
100
12
100
(SNARE);(Synaptobrevin)
1
27
30
27
31
25
682
97
70
100
(SSL_OB);(Stap_Strp_tox_C)
1
34
39
36
41
11
1128
97
97
94
(Stap_Strp_tox_C);(Stap_Strp_toxin)
1
51
77
56
86
6
1150
99
94
91
(TFIIA);(TFIIA_gamma_C)
1
25
31
28
34
10
1129
100
32
89
(TFIIA);(TFIIA_gamma_N)
1
28
34
28
34
9
1167
100
38
100
(Transket_pyr);(Transketolase_N)
1
20
65
20
70
22
875
98
100
100
(Transket_pyr);(Transketolase_N)
2
20
65
20
70
22
1610
100
100
100
(Transketolase_C);(Transketolase_N)
1
20
65
20
70
8
247
98
100
100
(UDPG_MGDP_dh);(UDPG_MGDP_dh_C)
1
27
43
27
43
12
472
100
100
100
(UDPG_MGDP_dh);(UDPG_MGDP_dh_N)
1
27
43
27
43
19
788
100
100
100
(UDPG_MGDP_dh);(UDPG_MGDP_dh_N)
2
25
40
27
43
20
262
98
100
93
(UDPG_MGDP_dh_C);(UDPG_MGDP_dh_N)
1
24
34
27
43
13
275
100
100
89
(XPG_I);(XPG_N)
1
30
49
30
51
16
2084
100
96
100
(peroxidase);(Peroxidase_ext)
1
23
73
23
73
28
2975
100
100
100
(Secretin);(Secretin_N)
1
22
22
23
23
12
469
100
27
96
(Nrap_D4);(Ribosomal_S3Ae)
1
23
23
24
24
20
503
100
0
96
(Nop14);(Ribosom_S12_S23)
1
25
25
27
27
25
499
100
4
93
(Nop14);(RIBIOP_C)
1
27
27
29
29
25
413
70
4
93
(Utp14);(WD40)
1
25
25
27
27
18
431
100
4
93
(Utp14);(WD40)
2
25
25
27
27
26
341
36
0
93
(Utp14);(WD40)
3
22
22
27
27
23
164
100
5
81
(Sof1);(Utp14)
1
29
29
29
29
26
664
100
3
100
(TPR_14);(Utp14)
1
25
25
26
26
24
548
100
4
96
(U3_assoc_6);(Utp14)
1
20
20
28
28
76
160
100
0
71
(BING4CT);(Utp14)
1
26
26
29
29
26
241
100
4
90
(Ribosomal_S7e);(Utp14)
1
23
23
26
26
24
284
100
4
88
(NOP5NT);(Utp14)
1
25
25
27
27
26
190
100
4
93
(Big_8);(SdrG_C_C)
1
26
30
26
30
11
554
97
97
100
(ATP-grasp);(PurK_C)
1
20
30
20
32
11
646
100
100
100
(TetR_C_1);(TetR_N)
1
29
75
33
81
9
441
100
99
88
(FeoB_Cyto);(FeoB_N)
1
21
31
21
31
10
1122
100
100
100
(GramPos_pilinBB);(SpaA)
1
21
24
21
24
8
271
100
100
100
(RIG-I_C);(RIG-I_C-RD)
1
22
31
23
37
23
577
97
81
96
(Helicase_C);(RIG-I_C)
1
29
40
30
44
26
655
100
88
97
(MMPL);(Sterol-sensing)
1
23
23
24
24
9
1634
100
22
96
(Nop14);(RTC)
1
20
20
20
20
25
598
100
5
100
(EMG1);(Nop14)
1
25
25
25
25
25
883
100
4
100
(EMG1);(Nop14)
2
21
21
25
25
25
173
100
5
84
(Brix);(Nop14)
1
20
20
20
20
25
473
100
5
100
(CBF);(Nop14)
1
26
26
26
26
25
1414
100
4
100
(Bromo_TP);(WD40)
1
25
25
25
25
15
117
100
12
100
(TFIID_30kDa);(WD40)
1
25
25
25
25
41
162
100
12
100
(Bromo_TP);(TFIID-31kDa)
1
24
24
25
25
78
315
100
12
96
(TFIID_30kDa);(TFIID-18kDa)
1
20
20
20
20
67
247
100
15
100
(Prp19);(U-box)
1
24
24
26
26
40
279
100
8
92
(Ge1_WD40);(Ribosomal_S4)
1
20
20
20
20
72
624
100
0
100
(1-cysPrx_C);(AhpC-TSA)
1
64
125
64
125
10
258
99
98
100
(2Fe-2S_thioredx);(Complex1_51K)
1
157
177
160
180
17
1251
100
31
98
(2Fe-2S_thioredx);(NADH_4Fe-4S)
1
152
172
158
178
17
341
88
32
96
(2Fe-2S_thioredx);(SLBB)
1
155
175
157
177
14
236
89
31
99
(2OG-FeII_Oxy);(DIOX_N)
1
37
135
37
135
10
1801
100
96
100
(40S_SA_C);(Ribosomal_S17e)
1
183
183
193
193
20
191
78
6
95
(7tm_1);(Cytochrom_B562)
1
22
44
37
70
12
415
93
86
59
(7tm_1);(G-alpha)
1
265
265
267
267
11
495
63
5
99
(7tm_1);(Phage_lysozyme)
1
22
38
49
87
17
813
100
95
45
(7tm_1);(WD40)
1
33
33
217
217
29
128
67
12
15
(A2M);(A2M_recep)
1
38
43
66
75
33
211
100
88
58
(A2M);(A2M_recep)
2
29
33
66
75
17
495
97
82
44
(AAA);(AAA_2)
1
51
52
55
56
35
251
96
33
93
(AAA);(AAA_assoc_2)
1
30
30
30
30
20
181
100
10
100
(AAA);(AAA_assoc_2)
2
28
28
30
30
65
308
100
4
93
(AAA);(Lon_C)
1
28
28
29
29
52
305
100
39
97
(AAA);(Prot_ATP_ID_OB)
1
46
46
71
71
14
194
85
17
65
(AAA);(Rep_fac_C)
1
34
34
34
34
15
284
100
18
100
(AAA);(Vps4_C)
1
63
71
71
83
10
434
100
31
89
(AAA_16);(ORC3_N)
1
28
28
28
28
9
482
82
4
100
(AAA_16);(ORC4_C)
1
29
29
29
29
11
613
76
7
100
(AAA_2);(ClpB_D2-small)
1
90
104
100
115
8
349
83
33
90
(AAA_2);(ClpB_D2-small)
2
77
87
100
115
15
211
100
48
77
(AAA_6);(AAA_7)
1
21
23
22
25
16
157
87
48
95
(AAA_6);(DHC_N2)
1
20
22
21
24
17
905
91
50
95
(AAA_7);(AAA_8)
1
20
22
21
24
16
609
91
50
95
(AAA_8);(AAA_9)
1
20
22
21
24
21
759
91
50
95
(AAA_8);(MT)
1
20
22
21
24
4
897
91
50
95
(AAA_9);(MT)
1
21
23
21
24
4
1047
91
48
100
(AAA_assoc_2);(DNA_pol3_delta2)
1
31
31
31
31
89
535
100
13
100
(AAA_assoc_2);(Rep_fac_C)
1
28
28
28
28
55
1245
100
4
100
(ABC_membrane);(ABC_tran)
1
193
237
193
240
6
523
83
46
100
(ABC_tran);(ABC2_membrane)
1
44
47
44
47
9
919
83
30
100
(ABC_tran);(BCA_ABC_TP_C)
1
22
27
22
27
8
244
96
96
100
(ABC_tran);(BPD_transp_1)
1
22
36
24
38
11
810
100
83
92
(ACP_syn_III);(ACP_syn_III_C)
1
53
107
56
111
10
1261
100
99
95
(ADH_N);(ADH_N_assoc)
1
25
33
25
33
4
838
100
97
100
(ADH_N);(ADH_zinc_N)
1
153
315
154
316
1
608
100
97
99
(ADH_N);(ADH_zinc_N)
2
122
276
154
316
4
253
96
95
79
(ADH_N);(ADH_zinc_N_2)
1
31
39
31
39
6
938
97
92
100
(ADH_N_2);(ADH_zinc_N)
1
20
38
23
44
9
306
100
100
87
(ADK);(ADK_lid)
1
40
80
40
80
13
538
99
98
100
(AIRS);(AIRS_C)
1
35
56
36
59
2
978
98
98
97
(AMP-binding);(AMP-binding_C)
1
123
207
127
211
6
626
100
96
97
(ANF_receptor);(Lig_chan-Glu_bd)
1
54
55
109
127
33
233
100
5
50
(ANF_receptor);(Lig_chan-Glu_bd)
2
31
44
109
127
22
254
100
41
28
(ANF_receptor);(NCD3G)
1
38
41
40
43
29
387
100
27
95
(ATP-grasp_2);(Ligase_CoA)
1
29
59
29
59
16
300
95
76
100
(ATP-gua_Ptrans);(ATP-gua_PtransN)
1
28
52
29
53
23
889
96
94
97
(ATP-synt);(ATP-synt_C)
1
108
111
170
174
15
156
100
54
64
(ATP-synt);(ATP-synt_DE)
1
23
23
46
47
33
1121
100
13
50
(ATP-synt);(ATP-synt_DE_N)
1
215
230
215
230
6
813
100
43
100
(ATP-synt);(ATP-synt_Eps)
1
146
158
146
158
17
856
100
54
100
(ATP-synt);(ATP-synt_ab)
1
173
203
213
243
17
237
100
52
81
(ATP-synt);(ATP-synt_ab)
2
171
198
213
243
17
287
100
51
80
(ATP-synt);(ATP-synt_ab_C)
1
170
200
212
242
18
278
100
52
80
(ATP-synt);(ATP-synt_ab_C)
2
32
34
212
242
23
138
100
47
15
(ATP-synt);(ATP-synt_ab_C)
3
25
29
212
242
27
126
100
72
12
(ATP-synt_A);(ATP-synt_C)
1
121
122
153
154
17
374
100
33
79
(ATP-synt_A);(Mt_ATP-synt_B)
1
71
71
73
73
20
446
100
18
97
(ATP-synt_C);(ATP-synt_DE_N)
1
145
149
189
193
6
205
99
41
77
(ATP-synt_C);(ATP-synt_Eps)
1
33
33
90
90
38
117
100
91
37
(ATP-synt_C);(V_ATPase_I)
1
48
48
56
56
9
424
100
10
86
(ATP-synt_C);(vATP-synt_AC39)
1
51
51
61
61
9
174
100
10
84
(ATP-synt_D);(ATP-synt_F)
1
81
86
82
89
14
1480
100
17
99
(ATP-synt_D);(vATP-synt_AC39)
1
49
49
51
51
14
978
100
10
96
(ATP-synt_DE);(ATP-synt_Eps)
1
43
52
52
62
2
316
100
50
83
(ATP-synt_DE_N);(ATP-synt_Eps)
1
107
118
144
155
21
373
100
66
74
(ATP-synt_F);(vATP-synt_AC39)
1
24
24
40
40
15
193
100
17
60
(ATP-synt_ab);(ATP-synt_D)
1
69
74
82
89
25
258
100
16
84
(ATP-synt_ab);(ATP-synt_ab_C)
1
84
106
192
224
20
703
100
42
44
(ATP-synt_ab);(ATP-synt_ab_C)
2
64
86
192
224
38
165
99
43
33
(ATP-synt_ab);(ATP-synt_ab_N)
1
136
153
294
350
7
124
96
59
46
(ATP-synt_ab);(ATP-synt_ab_N)
2
111
146
294
350
5
384
99
47
38
(ATP-synt_ab);(ATP-synt_ab_Xtn)
1
75
85
89
117
24
129
99
29
84
(ATP-synt_ab);(ATP-synt_ab_Xtn)
2
50
73
89
117
38
1464
100
47
56
(ATP-synt_ab);(vATP-synt_E)
1
57
57
74
74
16
341
100
7
77
(ATP-synt_ab_C);(ATP-synt_DE)
1
20
20
28
31
36
256
100
10
71
(ATP-synt_ab_N);(ATP-synt_ab_Xtn)
1
44
53
61
87
38
575
100
34
72
(ATP-synt_ab_N);(OSCP)
1
127
128
191
192
17
336
100
27
66
(ATP-synt_ab_N);(OSCP)
2
102
102
191
192
8
206
96
42
53
(ATP-synt_ab_N);(OSCP)
3
26
26
191
192
16
195
100
19
14
(ATP-synt_ab_N);(OSCP)
4
21
21
191
192
17
121
100
14
11
(ATP-synt_ab_N);(vATP-synt_E)
1
63
63
75
75
16
155
100
6
84
(ATP1G1_PLM_MAT8);(Cation_ATPase_C)
1
25
57
25
60
34
777
100
67
100
(ATP1G1_PLM_MAT8);(Na_K-ATPase)
1
24
36
24
58
35
328
100
47
100
(Actin);(Gelsolin)
1
26
56
27
57
44
794
100
98
96
(Actin);(Myosin_head)
1
63
63
63
63
34
867
95
37
100
(Acyl-CoA_dh_1);(Acyl-CoA_dh_M)
1
87
131
89
133
8
514
91
96
98
(Acyl-CoA_dh_1);(Acyl-CoA_dh_M)
2
86
128
89
133
6
563
96
96
97
(Acyl-CoA_dh_1);(Acyl-CoA_dh_N)
1
74
115
74
115
7
1078
96
96
100
(Acyl-CoA_dh_M);(Acyl-CoA_dh_N)
1
83
134
84
137
4
905
96
96
99
(Acyl_transf_1);(KAsynt_C_assoc)
1
34
46
34
46
5
491
96
70
100
(Acyl_transf_1);(MaoC_dehydratas)
1
20
20
21
23
81
163
100
45
95
(Adaptin_N);(Clat_adaptor_s)
1
40
43
45
48
6
1691
100
53
89
(AdoHcyase);(AdoHcyase_NAD)
1
38
65
38
66
27
744
91
92
100
(AdoHcyase);(AdoHcyase_NAD)
2
33
53
38
66
39
1037
87
87
87
(AlaDh_PNT_C);(AlaDh_PNT_N)
1
25
36
32
52
11
2215
92
89
78
(AlaDh_PNT_C);(AlaDh_PNT_N)
2
25
42
32
52
23
274
95
98
78
(Ala_racemase_C);(Ala_racemase_N)
1
36
66
36
66
18
727
100
100
100
(Ala_racemase_C);(Ala_racemase_N)
2
35
65
36
66
18
899
100
97
97
(Ald_Xan_dh_C);(Ald_Xan_dh_C2)
1
21
82
22
83
15
2128
99
99
95
(Ald_Xan_dh_C);(Fer2)
1
21
67
21
81
15
304
99
99
100
(Ald_Xan_dh_C);(Fer2_2)
1
22
69
22
83
15
260
99
99
100
(Ald_Xan_dh_C2);(Fer2)
1
21
67
21
72
17
282
99
99
100
(Ald_Xan_dh_C2);(Fer2_2)
1
22
69
22
83
17
1013
99
99
100
(Alpha-amylase);(Alpha-amylase_C)
1
39
167
47
191
2
827
100
100
83
(Alpha-amylase);(CBM_48)
1
37
65
37
95
10
945
95
92
100
(Alpha-amylase);(DUF3459)
1
31
46
33
56
6
1354
100
72
94
(Alpha-amylase);(Malt_amylase_C)
1
51
152
51
152
4
887
100
99
100
(Alpha_E1_glycop);(Alpha_E2_glycop)
1
29
29
54
56
33
2938
79
0
54
(Alpha_E1_glycop);(Alpha_E2_glycop)
2
21
23
54
56
34
1194
91
30
39
(Alpha_E2_glycop);(Peptidase_S3)
1
27
27
32
32
25
490
78
0
84
(Amidohydro_1);(Urease_alpha)
1
25
54
27
99
9
1266
100
98
93
(Ank);(Ank_2)
1
156
174
173
212
3
643
98
75
90
(Ank_2);(Ank_4)
1
96
106
108
122
4
667
99
43
89
(Ank_2);(Ank_5)
1
51
70
60
79
12
989
100
84
85
(Anoct_dimer);(Anoctamin)
1
38
39
38
39
3
2058
82
59
100
(ArgoMid);(Piwi)
1
21
59
21
59
4
1675
98
98
100
(Arm);(Arm_3)
1
70
152
77
167
20
768
100
91
91
(Arm);(IBB)
1
54
120
73
157
15
513
100
92
74
(Arm);(IBB)
2
34
106
73
157
12
211
0
0
47
(Arrestin_C);(Arrestin_N)
1
22
38
23
41
29
1447
97
76
96
(BBE);(FAD_binding_4)
1
36
66
36
71
18
776
98
95
100
(BCAS2);(Prp19)
1
28
28
30
30
15
528
89
11
93
(BCAS2);(Prp19)
2
24
24
30
30
15
371
88
8
80
(Bcl-2);(BH4)
1
77
129
84
137
6
869
95
84
92
(Bcl-2);(BH4)
2
23
34
84
137
18
183
3
12
27
(Bcl-2);(Bclx_interact)
1
32
44
33
45
4
905
95
95
97
(Biotin_carb_C);(Biotin_carb_N)
1
43
87
45
90
19
557
94
94
96
(Biotin_carb_C);(Biotin_carb_N)
2
33
74
45
90
19
369
66
39
73
(Biotin_carb_C);(CPSase_L_D2)
1
44
87
45
90
19
1148
94
94
98
(Biotin_carb_C);(CPSase_L_D2)
2
27
67
45
90
23
199
63
33
60
(Biotin_carb_N);(CPSase_L_D2)
1
44
89
45
90
17
957
94
94
98
(Brix);(Ribosomal_S9)
1
30
30
36
36
48
312
100
3
83
(Bromodomain);(DUF902)
1
34
104
34
105
5
190
100
92
100
(C1-set);(DUF1968)
1
286
468
293
517
2
1206
97
90
98
(C1-set);(MHC_I)
1
601
1122
638
1273
6
695
95
91
94
(C1-set);(MHC_I)
2
210
344
638
1273
14
171
95
96
33
(C1-set);(MHC_I)
3
127
218
638
1273
18
263
0
3
20
(C1-set);(MHC_I)
4
43
124
638
1273
70
521
0
0
7
(C1-set);(MHC_I)
5
41
120
638
1273
70
327
0
0
6
(C1-set);(MHC_I)
6
38
75
638
1273
13
138
0
3
6
(C1-set);(MHC_I)
7
34
191
638
1273
21
160
1
0
5
(C1-set);(MHC_I)
8
34
182
638
1273
20
186
0
0
5
(C1-set);(MHC_I)
9
34
84
638
1273
19
246
0
0
5
(C1-set);(MHC_I)
10
34
37
638
1273
23
390
97
95
5
(C1-set);(MHC_I)
11
33
96
638
1273
20
253
0
0
5
(C1-set);(MHC_I)
12
27
62
638
1273
68
325
0
5
4
(C1-set);(MHC_I)
13
22
33
638
1273
41
236
0
3
3
(C1-set);(MHC_II_alpha)
1
162
221
164
226
18
302
96
95
99
(C1-set);(MHC_II_alpha)
2
126
165
164
226
18
508
100
96
77
(C1-set);(MHC_II_beta)
1
162
221
164
226
10
228
97
95
99
(C1-set);(MHC_II_beta)
2
24
41
164
226
28
291
0
0
15
(C1-set);(MHC_I_3)
1
49
137
49
157
35
566
97
95
100
(C1-set);(MHC_I_3)
2
27
46
49
157
37
205
96
91
55
(C1-set);(V-set)
1
2389
3110
3492
4657
2
180
92
85
68
(C1-set);(V-set)
2
2310
2899
3492
4657
3
255
91
83
66
(C1-set);(V-set)
3
86
102
3492
4657
1
160
0
1
2
(C1-set);(V-set)
4
70
86
3492
4657
18
135
0
3
2
(C1-set);(V-set)
5
69
92
3492
4657
17
142
2
10
2
(C1-set);(V-set)
6
62
73
3492
4657
7
280
8
37
2
(C1-set);(V-set)
7
56
65
3492
4657
20
225
3
8
2
(C1-set);(V-set)
8
54
65
3492
4657
7
162
0
5
2
(C1-set);(V-set)
9
53
65
3492
4657
15
182
0
2
2
(C1-set);(V-set)
10
52
62
3492
4657
6
147
2
10
1
(C1-set);(V-set)
11
51
61
3492
4657
10
168
7
0
1
(C1-set);(V-set)
12
44
53
3492
4657
5
150
23
21
1
(C1-set);(V-set)
13
39
46
3492
4657
35
114
0
4
1
(C1-set);(V-set)
15
37
50
3492
4657
3
174
0
0
1
(C1-set);(V-set)
16
37
40
3492
4657
17
200
0
8
1
(C1-set);(V-set)
17
36
42
3492
4657
17
166
0
0
1
(C1-set);(V-set)
18
34
45
3492
4657
17
140
0
0
1
(C1-set);(V-set)
19
34
47
3492
4657
5
206
0
0
1
(C1-set);(V-set)
20
34
45
3492
4657
12
225
0
2
1
(C1-set);(V-set)
21
34
39
3492
4657
3
159
0
3
1
(C1-set);(V-set)
22
33
47
3492
4657
2
184
0
0
1
(C1-set);(V-set)
23
33
36
3492
4657
16
157
0
0
1
(C1-set);(V-set)
24
32
36
3492
4657
6
154
0
3
1
(C1-set);(V-set)
25
31
36
3492
4657
12
211
3
0
1
(C1-set);(V-set)
26
30
33
3492
4657
6
145
0
0
1
(C1-set);(V-set)
27
29
42
3492
4657
3
169
0
0
1
(C1-set);(V-set)
28
29
40
3492
4657
6
191
5
2
1
(C1-set);(V-set)
29
28
47
3492
4657
15
270
0
0
1
(C1-set);(V-set)
30
28
45
3492
4657
6
131
0
0
1
(C1-set);(V-set)
31
28
31
3492
4657
21
349
42
0
1
(C1-set);(V-set)
32
28
32
3492
4657
16
347
0
3
1
(C1-set);(V-set)
33
28
34
3492
4657
15
193
0
0
1
(C1-set);(V-set)
34
27
30
3492
4657
18
140
0
3
1
(C1-set);(V-set)
35
27
33
3492
4657
17
136
0
0
1
(C1-set);(V-set)
36
26
44
3492
4657
20
197
0
0
1
(C1-set);(V-set)
37
26
30
3492
4657
20
191
0
3
1
(C1-set);(V-set)
38
25
26
3492
4657
20
162
4
4
1
(C1-set);(V-set)
39
25
29
3492
4657
14
197
0
7
1
(C1-set);(V-set)
40
25
26
3492
4657
19
158
0
0
1
(C1-set);(V-set)
41
25
26
3492
4657
19
139
4
12
1
(C1-set);(V-set)
42
24
34
3492
4657
15
158
0
0
1
(C1-set);(V-set)
43
24
30
3492
4657
7
287
0
0
1
(C1-set);(V-set)
44
24
29
3492
4657
5
204
0
3
1
(C1-set);(V-set)
45
23
35
3492
4657
18
156
0
6
1
(C1-set);(V-set)
46
23
27
3492
4657
5
200
4
0
1
(C1-set);(V-set)
47
23
23
3492
4657
5
138
0
4
1
(C1-set);(V-set)
48
22
32
3492
4657
13
156
0
0
1
(C1-set);(V-set)
49
22
34
3492
4657
17
193
0
0
1
(C1-set);(V-set)
50
22
33
3492
4657
6
190
0
0
1
(C1-set);(V-set)
51
22
26
3492
4657
18
143
4
15
1
(C1-set);(V-set)
52
22
27
3492
4657
16
139
0
4
1
(C1-set);(V-set)
53
21
25
3492
4657
18
161
0
0
1
(C1-set);(V-set)
54
21
27
3492
4657
16
217
0
4
1
(C1-set);(V-set)
55
21
28
3492
4657
2
126
86
82
1
(C1-set);(V-set)
56
21
23
3492
4657
15
171
0
4
1
(C1-set);(V-set)
57
21
21
3492
4657
16
188
5
10
1
(C1-set);(V-set)
58
20
34
3492
4657
17
153
3
0
1
(C1-set);(V-set)
59
20
25
3492
4657
17
160
0
0
1
(C1-set);(V-set)
60
20
24
3492
4657
12
174
0
0
1
(C1-set);(V-set)
61
20
22
3492
4657
48
486
14
0
1
(C1-set);(V-set)
62
20
23
3492
4657
15
182
0
4
1
(C1-set);(V-set_2)
1
201
220
256
289
11
164
96
89
79
(C2-set_2);(V-set)
1
30
35
48
56
9
236
97
91
62
(CAF1C_H4-bd);(WD40)
1
26
37
26
37
35
1146
92
89
100
(CBS);(IMPDH)
1
42
51
47
62
11
427
100
59
89
(CCP_MauG);(Cytochrom_C)
1
21
26
22
32
24
1144
100
100
95
(CDC45);(MCM_N)
1
22
22
22
22
15
554
100
41
100
(CDC45);(MCM_N)
2
21
21
22
22
21
362
100
38
95
(CDC45);(Sld5)
1
22
22
22
22
21
255
100
41
100
(CDC48_2);(CDC48_N)
1
76
83
79
88
2
580
99
43
96
(CHCH);(Ribosomal_S11)
1
32
33
37
38
60
176
100
0
86
(CHCH);(Ribosomal_S7)
1
43
44
43
44
21
663
100
5
100
(COX1);(COX2)
1
68
158
68
171
15
1293
98
70
100
(COX1);(COX2_TM)
1
59
119
60
133
10
2087
100
63
98
(COX1);(COX3)
1
56
106
56
119
22
1954
100
58
100
(COX1);(COX4)
1
28
75
28
88
15
960
100
64
100
(COX1);(COX5B)
1
30
77
31
91
30
361
100
57
97
(COX1);(COX6A)
1
23
70
25
85
35
361
99
59
92
(COX1);(COX6B)
1
20
67
25
85
35
140
100
60
80
(COX1);(COX7C)
1
30
77
30
90
4
983
100
58
100
(COX1);(COX7a)
1
27
74
30
90
20
203
100
64
90
(COX2);(COX4)
1
25
72
28
88
16
532
100
62
89
(COX2);(COX6B)
1
28
75
28
88
34
685
100
55
100
(COX2);(COX6C)
1
25
72
26
86
16
454
99
60
96
(COX2_TM);(COX4)
1
25
72
27
87
16
382
100
62
93
(COX2_TM);(COX5A)
1
28
75
28
88
28
282
100
57
100
(COX2_TM);(COX6C)
1
28
75
28
88
16
910
100
60
100
(COX3);(COX5B)
1
30
77
30
90
30
847
100
60
100
(COX3);(COX6A)
1
26
73
28
88
34
1574
99
59
93
(COX3);(COX6B)
1
27
74
28
88
34
249
100
55
96
(COX3);(COX7a)
1
30
77
30
90
20
1300
100
60
100
(COX4);(COX5A)
1
28
75
28
88
15
1188
100
60
100
(COX4);(COX6C)
1
25
72
27
87
15
375
100
61
93
(COX4);(COX7B)
1
20
67
20
80
79
1426
100
61
100
(COX5A);(COX5B)
1
25
72
25
85
35
185
100
58
100
(COX5A);(COX6C)
1
28
75
28
88
16
579
100
56
100
(COX5B);(COX7a)
1
26
73
27
87
20
166
100
59
96
(COX6A);(COX6B)
1
22
69
25
85
35
207
99
52
88
(COX7C);(COX8)
1
20
67
20
80
42
700
100
61
100
(CPSF_A);(MMS1_N)
1
59
79
66
90
11
1169
100
72
89
(CPSF_A);(WD40)
1
32
34
33
36
12
195
100
62
97
(CR6_interact);(MRP-L51)
1
59
64
59
64
74
427
100
14
100
(CR6_interact);(Ribosomal_L33)
1
58
63
58
63
42
475
100
14
100
(CR6_interact);(Ribosomal_L4)
1
58
63
58
63
74
423
100
14
100
(CRAL_TRIO);(CRAL_TRIO_N)
1
21
35
21
35
7
435
89
89
100
(CSN8_PSD8_EIF3K);(PCI)
1
81
82
81
82
13
981
100
22
100
(Cadherin);(Cadherin_2)
1
32
36
32
36
19
175
100
100
100
(Calici_coat);(Calici_coat_C)
1
82
167
84
175
1
3596
98
90
98
(Calici_coat);(Calici_coat_C)
2
77
166
84
175
1
235
92
89
92
(Calici_coat);(Rhv)
1
25
25
47
62
4
1106
92
28
53
(Catalase);(Catalase-rel)
1
44
142
44
142
7
1333
99
97
100
(Cation_ATPase_C);(E1-E2_ATPase)
1
73
106
75
141
9
778
100
65
97
(Cation_ATPase_C);(Hydrolase)
1
45
80
54
115
13
221
100
78
83
(Cation_ATPase_C);(Na_K-ATPase)
1
40
80
41
85
28
1835
100
69
98
(Cation_ATPase_N);(E1-E2_ATPase)
1
91
124
96
184
10
1729
100
55
95
(Cdc6_C);(ORC4_C)
1
27
27
27
27
7
737
67
7
100
(Chal_sti_synt_C);(Chal_sti_synt_N)
1
63
116
63
116
2
1710
100
97
100
(Chal_sti_synt_C);(Chal_sti_synt_N)
2
32
68
63
116
19
810
96
94
51
(Chloroa_b-bind);(PSI_PSAK)
1
27
29
36
42
30
350
100
14
75
(Chloroa_b-bind);(PSI_PsaF)
1
34
37
42
48
43
343
100
16
81
(Chloroa_b-bind);(PSI_PsaJ)
1
34
35
41
47
47
146
100
11
83
(Chloroa_b-bind);(PsaA_PsaB)
1
35
38
42
48
23
183
100
16
83
(Complex1_30kDa);(Complex1_49kDa)
1
134
142
135
143
12
1303
100
22
99
(Complex1_30kDa);(Oxidored_q6)
1
160
166
162
170
12
392
99
19
99
(Complex1_49kDa);(Fer4_7)
1
150
156
156
164
25
453
100
20
96
(Complex1_49kDa);(NADH-G_4Fe-4S_3)
1
145
153
145
153
21
792
100
21
100
(Complex1_49kDa);(NADHdh)
1
138
143
144
149
16
808
100
17
96
(Complex1_49kDa);(Oxidored_q6)
1
158
164
160
168
25
561
100
19
99
(Complex1_51K);(Fer2_4)
1
95
95
149
157
24
142
100
23
64
(Complex1_51K);(Molybdopterin)
1
27
27
32
40
47
284
100
15
84
(Cu-oxidase);(Cu-oxidase_2)
1
80
199
80
231
1
910
100
99
100
(Cu-oxidase);(Cu-oxidase_3)
1
106
392
107
427
1
1143
100
98
99
(Cu-oxidase_2);(Cu-oxidase_3)
1
106
262
106
296
6
993
100
97
100
(Cu_amine_oxid);(Cu_amine_oxidN2)
1
21
146
21
146
8
1124
98
99
100
(Cwf_Cwc_15);(PROCN)
1
36
36
37
37
5
967
92
11
97
(Cwf_Cwc_15);(SKIP_SNW)
1
31
31
32
32
5
278
90
6
97
(Cwf_Cwc_15);(WD40)
1
35
35
37
37
5
286
91
9
95
(Cyclin_N);(Pkinase)
1
66
207
70
231
7
1229
100
91
94
(Cytochrom_B559);(Photo_RC)
1
47
102
47
102
58
358
100
33
100
(Cytochrom_B559);(PsbJ)
1
34
87
35
90
25
346
100
20
97
(Cytochrom_B559);(PsbJ)
2
20
70
35
90
26
389
100
23
57
(Cytochrom_B559a);(Photo_RC)
1
46
100
46
101
44
1134
100
32
100
(Cytochrom_B559a);(Photo_RC)
2
46
100
46
101
44
255
100
31
100
(Cytochrom_B_C);(Cytochrome_B)
1
21
29
23
39
28
1811
100
62
91
(Cytochrom_B_C);(Rieske)
1
71
102
79
121
11
506
86
55
90
(Cytochrom_B_C);(UCR_14kD)
1
54
85
54
93
25
398
100
62
100
(Cytochrom_B_C);(UcrQ)
1
52
83
52
90
20
681
100
64
100
(Cytochrom_C1);(Cytochrome_B)
1
60
98
65
110
32
542
100
64
92
(Cytochrom_C1);(UCR_14kD)
1
31
68
50
88
37
147
100
84
62
(Cytochrom_C1);(UCR_TM)
1
44
71
46
81
24
507
100
68
96
(Cytochrom_C1);(UCR_UQCRX_QCR9)
1
51
88
54
92
32
851
100
67
94
(Cytochrom_C1);(UCR_hinge)
1
55
86
55
93
25
765
100
62
100
(Cytochrom_C1);(UcrQ)
1
52
89
52
91
20
366
100
66
100
(Cytochrom_C550);(PSII)
1
25
79
25
80
50
930
100
43
100
(Cytochrom_C550);(Photo_RC)
1
25
79
25
80
58
481
100
43
100
(Cytochrom_C550);(PsbU)
1
23
77
23
78
32
634
100
26
100
(Cytochrome_B);(Rieske)
1
47
67
63
105
28
287
90
63
75
(Cytochrome_B);(UCR_14kD)
1
51
82
54
93
25
194
100
65
94
(Cytochrome_B);(UCR_Fe-S_N)
1
25
41
25
41
5
381
100
54
100
(Cytochrome_B);(UCR_Fe-S_N)
2
25
41
25
41
5
219
100
54
100
(Cytochrome_B);(UCR_TM)
1
43
63
46
85
24
214
79
59
93
(Cytochrome_B);(UCR_TM)
2
42
69
46
85
24
482
100
70
91
(Cytochrome_B);(UcrQ)
1
48
78
52
90
20
156
100
67
92
(DAP3);(Ribosomal_S7)
1
47
48
55
56
16
696
100
2
85
(DAP3);(Ribosomal_S9)
1
64
65
64
65
5
651
98
3
100
(DEAD);(Helicase_C)
1
109
168
162
236
5
484
100
90
67
(DEAD);(rRNA_proc-arch)
1
21
22
22
23
44
304
91
73
95
(DNA_RNApol_7kD);(RNA_pol_A_bac)
1
107
151
201
330
27
346
100
62
53
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)
1
200
289
200
329
18
238
100
53
100
(DNA_RNApol_7kD);(RNA_pol_Rpb2_6)
1
205
293
205
336
31
657
100
53
100
(DNA_gyraseB);(HATPase_c)
1
31
39
33
48
10
497
97
90
94
(DNA_gyraseB_C);(DNA_topoisoIV)
1
29
69
30
71
34
313
94
77
97
(DNA_gyraseB_C);(DNA_topoisoIV)
2
29
65
30
71
35
214
94
74
97
(DNA_photolyase);(FAD_binding_7)
1
47
108
47
108
12
1317
100
91
100
(DNA_pol3_beta);(DNA_pol3_beta_2)
1
60
104
62
106
11
624
100
98
97
(DNA_pol3_beta);(DNA_pol3_beta_3)
1
65
109
66
110
11
603
93
87
98
(DNA_pol3_beta_2);(DNA_pol3_beta_3)
1
60
104
62
106
11
677
100
98
97
(DNA_pol_B);(DNA_pol_B_exo1)
1
60
220
60
223
3
1078
100
98
100
(DNA_pol_B_palm);(DNA_pol_B_thumb)
1
41
666
41
690
2
514
96
95
100
(DNA_pol_B_palm);(DNA_pol_lambd_f)
1
35
652
35
676
2
399
96
95
100
(DNA_pol_B_thumb);(HHH_8)
1
20
392
31
648
12
215
95
95
65
(DNA_pol_lambd_f);(HHH_8)
1
26
591
30
650
20
198
95
95
87
(DNA_topoisoIV);(Toprim)
1
38
80
44
95
11
316
95
79
86
(DPPIV_N);(Peptidase_S9)
1
45
170
54
184
16
1402
100
94
83
(DPPIV_N);(Peptidase_S9)
2
41
153
54
184
16
329
89
93
76
(DSS1_SEM1);(PCI)
1
72
72
81
82
18
678
100
21
89
(DSS1_SEM1);(PCI)
2
40
40
81
82
45
304
100
18
49
(DSS1_SEM1);(RPN7)
1
49
49
55
55
39
175
100
4
89
(DUF1968);(V-set)
1
89
143
253
449
13
147
97
95
35
(DUF3439);(LRR_8)
1
39
44
53
60
10
639
100
91
74
(DUF4976);(Sulfatase)
1
41
53
41
53
1
2024
100
79
100
(DUF4982);(Glyco_hydro_2_C)
1
20
29
22
32
11
474
100
97
91
(DUF5110);(Glyco_hydro_31)
1
30
116
31
117
1
1116
100
91
97
(Dala_Dala_lig_C);(Dala_Dala_lig_N)
1
31
57
31
59
10
941
98
98
100
(DapB_C);(DapB_N)
1
23
36
23
36
14
1211
97
97
100
(Dimerisation);(Methyltransf_2)
1
29
68
29
68
15
731
99
100
100
(Dimerisation2);(Methyltransf_2)
1
25
46
25
46
9
1034
83
96
100
(E1-E2_ATPase);(Hydrolase)
1
58
99
90
185
15
663
100
65
64
(E1_dh);(Transket_pyr)
1
25
76
25
76
13
820
99
97
100
(E1_dh);(Transket_pyr)
2
24
74
25
76
13
1246
99
97
96
(EF-hand_1);(EF-hand_7)
1
24
29
68
86
5
404
86
69
35
(EF-hand_1);(S_100)
1
76
182
79
187
4
492
100
63
96
(EF-hand_1);(S_100)
2
26
38
79
187
14
172
13
16
33
(EF-hand_7);(IQ)
1
83
90
98
110
3
607
99
68
85
(EF-hand_7);(KCNQ_channel)
1
21
23
22
24
3
523
100
35
95
(EFG_C);(EFG_IV)
1
26
37
30
43
5
457
100
84
87
(EFG_C);(Ribosomal_L11_N)
1
61
62
71
75
14
220
100
8
86
(EFG_IV);(Ribosomal_S30)
1
20
20
27
27
51
223
100
5
74
(EFTUD2);(WD40)
1
37
37
37
37
13
269
92
14
100
(EFTUD2);(WD40)
2
29
29
37
37
20
433
90
10
78
(EIF_2_alpha);(GTP_EFTU_D2)
1
41
41
42
42
21
454
93
32
98
(ELFV_dehydrog);(ELFV_dehydrog_N)
1
50
80
50
80
2
608
98
79
100
(ELFV_dehydrog);(ELFV_dehydrog_N)
2
33
46
50
80
17
230
96
72
66
(EMG1);(Ribosomal_S7)
1
27
27
31
31
70
323
100
4
87
(ERAP1_C);(Peptidase_M1)
1
29
69
31
72
11
1691
100
83
94
(ERCC3_RAD25_C);(Tfb5)
1
37
40
40
43
27
494
98
32
92
(Endonuclease_NS);(Phosphodiest)
1
28
65
28
70
11
766
91
86
100
(Enolase_C);(Enolase_N)
1
48
101
49
102
40
638
94
93
98
(Enolase_C);(Enolase_N)
2
47
100
49
102
40
1483
100
95
96
(F-box-like);(Skp1)
1
29
40
29
41
13
961
92
80
100
(FAD_binding_2);(Succ_DH_flav_C)
1
21
59
24
93
12
2744
100
97
88
(FAD_binding_5);(Fer2_2)
1
20
62
20
71
16
212
98
98
100
(FAD_binding_6);(NAD_binding_1)
1
60
85
63
97
3
739
100
89
95
(FAT);(PI3_PI4_kinase)
1
75
76
76
82
7
522
100
49
99
(FATC);(PI3_PI4_kinase)
1
80
81
81
87
15
1536
100
48
99
(FERM_C);(FERM_M)
1
37
92
40
96
8
440
100
100
92
(FERM_C);(FERM_N)
1
33
88
38
94
11
288
100
100
87
(FERM_M);(FERM_N)
1
37
92
42
99
8
482
100
100
88
(FG-GAP);(Integrin_alpha2)
1
45
86
45
89
8
227
100
58
100
(FG-GAP);(Integrin_beta)
1
54
102
56
109
29
268
99
62
96
(FKBP_C);(RYDR_ITPR)
1
81
81
81
81
75
328
100
0
100
(FKBP_C);(SPRY)
1
80
80
81
81
73
258
100
0
99
(FRB_dom);(PI3_PI4_kinase)
1
22
27
23
29
15
241
100
56
96
(FXa_inhibition);(Trypsin)
1
49
271
50
280
22
421
96
98
98
(F_actin_cap_B);(F-actin_cap_A)
1
26
28
28
32
36
3038
93
68
93
(Fapy_DNA_glyco);(H2TH)
1
22
115
23
118
11
542
98
98
96
(Fcf1);(Ribosomal_S4)
1
26
26
28
28
63
297
100
4
93
(Fcf1);(Ribosomal_S8)
1
30
30
32
32
63
238
100
3
94
(Fe_hyd_lg_C);(Fe_hyd_SSU)
1
21
38
21
41
27
2053
97
87
100
(Fer2);(Fer2_2)
1
20
80
20
80
24
739
99
99
100
(Fer2_4);(NADH-G_4Fe-4S_3)
1
36
49
36
53
53
395
100
55
100
(Fer2_4);(NADH_4Fe-4S)
1
136
142
155
163
24
288
99
26
88
(Fer4_7);(Molybdop_Fe4S4)
1
27
27
106
114
36
114
100
15
25
(Fer4_7);(NADH-G_4Fe-4S_3)
1
140
148
149
157
21
169
100
22
94
(Fer4_7);(Oxidored_q6)
1
158
164
160
168
25
376
99
19
99
(Fer4_7);(PSI_PsaE)
1
44
49
44
49
52
512
100
20
100
(Fer4_7);(PsaA_PsaB)
1
43
48
45
50
45
248
100
31
96
(Fer4_7);(PsaD)
1
44
49
44
49
52
1047
100
31
100
(Fibrillarin);(NOP5NT)
1
35
35
35
35
28
343
100
6
100
(Fibrillarin);(Nop)
1
28
28
42
46
46
158
100
4
67
(Fibrillarin);(Nop)
2
24
24
42
46
45
124
96
4
57
(Fibrillarin);(Ribosomal_L7Ae)
1
33
33
39
42
41
334
100
3
85
(Filo_glycop);(TLV_coat)
1
33
53
33
53
29
444
87
68
100
(Filo_glycop);(TLV_coat)
2
33
53
33
53
29
1939
96
70
100
(Filo_glycop);(TLV_coat)
3
24
27
33
53
29
393
78
56
73
(Fimbrial);(FimH_man-bind)
1
36
75
41
84
20
1125
97
97
88
(Fimbrial);(PapD_C)
1
22
27
22
27
10
292
100
81
100
(Fimbrial);(PapD_N)
1
22
27
22
27
10
1348
100
81
100
(Flagellin_C);(Flagellin_N)
1
44
44
44
44
7
1885
82
41
100
(Flagellin_C);(Flagellin_N)
2
25
25
44
44
8
704
60
4
57
(Flagellin_C);(Flagellin_N)
3
23
23
44
44
40
1010
65
4
52
(Flagellin_C);(Flagellin_N)
4
21
21
44
44
45
266
67
5
48
(Flavi_DEAD);(Helicase_C)
1
20
56
25
71
14
748
100
93
80
(Flavi_NS2B);(Peptidase_S7)
1
30
72
31
75
23
1479
94
90
97
(Flavi_NS5);(FtsJ)
1
38
91
38
91
18
713
100
99
100
(Flavi_glycop_C);(Flavi_glycoprot)
1
91
102
134
150
9
696
100
43
68
(Flavi_glycop_C);(Flavi_glycoprot)
2
75
81
134
150
27
270
85
38
56
(Flavi_glycop_C);(Flavi_glycoprot)
3
39
40
134
150
29
500
88
2
29
(Flavi_glycop_C);(V-set)
1
20
21
73
79
17
382
100
38
27
(Flavi_glycoprot);(Flavi_M)
1
56
56
57
57
15
684
100
5
98
(Flavi_glycoprot);(Flavi_M)
2
33
33
57
57
15
382
100
0
58
(Flavi_glycoprot);(Flavi_propep)
1
22
23
22
23
32
438
100
17
100
(Flu_PA);(Flu_PB1)
1
68
81
68
81
24
7951
100
72
100
(Flu_PA);(Flu_PB2)
1
64
77
66
79
22
1542
100
73
97
(Flu_PB1);(Flu_PB2)
1
66
80
66
80
22
5706
100
72
100
(Fn3-like);(Glyco_hydro_3)
1
36
69
36
72
14
710
100
100
100
(Fn3-like);(Glyco_hydro_3_C)
1
36
69
36
72
14
559
100
100
100
(FtsZ_C);(Tubulin)
1
30
84
32
89
7
494
100
100
94
(FtsZ_C);(Tubulin)
2
20
73
32
89
10
439
1
11
62
(FumaraseC_C);(Lyase_1)
1
26
52
26
56
22
253
96
96
100
(FumaraseC_C);(Lyase_1)
2
24
47
26
56
27
251
94
96
92
(FumaraseC_C);(Lyase_1)
3
24
45
26
56
22
297
93
96
92
(Furin-like);(Recep_L_domain)
1
88
93
101
108
15
1061
100
62
87
(Furin-like);(Recep_L_domain)
2
37
39
101
108
20
317
100
33
37
(G-alpha);(V-set)
1
152
152
304
304
39
240
62
3
50
(G-alpha);(V-set)
2
141
141
304
304
30
821
84
4
46
(G-alpha);(WD40)
1
379
380
391
392
11
331
71
6
97
(G-alpha);(WD40)
2
377
378
391
392
6
551
71
6
96
(G-alpha);(WD40)
3
318
318
391
392
6
151
70
5
81
(G-alpha);(WD40)
4
194
194
391
392
19
133
79
5
50
(G-alpha);(WD40)
5
130
131
391
392
9
195
89
8
33
(G-gamma);(Myc-LZ)
1
31
33
52
62
4
626
100
48
60
(G-gamma);(WD40)
1
434
454
434
455
12
347
72
13
100
(G-gamma);(WD40)
2
432
450
434
455
12
343
72
12
100
(G-gamma);(WD40)
3
404
422
434
455
12
303
70
12
93
(G10);(PRO8NT)
1
37
37
38
38
53
1109
92
8
97
(G10);(PROCN)
1
32
32
37
37
53
220
69
6
86
(G6PD_C);(G6PD_N)
1
21
37
21
37
27
2202
100
76
100
(GAF);(PAS_2)
1
39
77
39
92
14
1881
99
96
100
(GAF);(PHY)
1
26
42
27
52
12
631
98
95
96
(GBP);(GBP_C)
1
23
29
23
29
9
1448
97
90
100
(GFO_IDH_MocA);(GFO_IDH_MocA_C)
1
72
96
72
119
1
1242
97
97
100
(GF_recep_IV);(Recep_L_domain)
1
47
55
50
59
29
535
100
87
94
(GHMP_kinases_C);(GHMP_kinases_N)
1
37
75
43
85
5
141
95
92
86
(GMC_oxred_C);(GMC_oxred_N)
1
45
124
45
139
1
4066
100
92
100
(GP120);(GP41)
1
141
164
141
164
51
1214
99
31
100
(GP120);(V-set)
1
128
169
242
302
9
406
98
38
53
(GP120);(V-set)
2
29
41
242
302
17
533
95
46
12
(GP120);(V-set)
3
21
35
242
302
28
281
71
17
9
(GP120);(ig)
1
32
41
34
44
25
1032
95
32
94
(GP41);(V-set)
1
30
41
100
135
8
406
95
71
30
(GST_C);(GST_N)
1
84
103
91
119
5
249
89
92
92
(GST_C);(GST_N)
2
84
106
91
119
6
533
99
97
92
(GST_C);(GST_N_3)
1
26
57
26
58
6
736
100
100
100
(GST_C);(GST_N_3)
2
24
54
26
58
6
375
94
93
92
(GST_C_2);(GST_N)
1
26
56
27
57
5
537
100
100
96
(GST_C_2);(GST_N_3)
1
77
122
77
126
4
585
100
98
100
(GST_C_2);(GST_N_3)
2
36
53
77
126
5
303
91
87
47
(GST_C_3);(GST_N)
1
95
259
99
295
7
759
100
99
96
(GST_C_3);(GST_N)
2
92
257
99
295
7
244
96
95
93
(GTP_EFTU);(GTP_EFTU_D2)
1
105
155
149
244
2
589
100
86
70
(GTP_EFTU);(GTP_EFTU_D3)
1
32
55
62
106
18
575
98
98
52
(GTP_EFTU);(GTP_EFTU_D3)
2
23
35
62
106
4
603
100
89
37
(GTP_EFTU);(LSM)
1
36
36
46
46
14
208
92
14
78
(GTP_EFTU);(PROCN)
1
51
51
53
53
17
565
75
18
96
(GTP_EFTU);(Ribosomal_L6)
1
24
24
92
106
53
140
100
4
26
(GTP_EFTU_D2);(GTP_EFTU_D3)
1
59
94
63
105
2
448
99
93
94
(GTP_EFTU_D2);(Ribosom_S12_S23)
1
26
26
47
49
9
186
100
4
55
(GalKase_gal_bdg);(GHMP_kinases_C)
1
22
48
22
48
2
496
96
94
100
(GalKase_gal_bdg);(GHMP_kinases_N)
1
22
47
22
48
2
1170
96
94
100
(Gal_mutarotas_2);(Glyco_hydro_31)
1
40
131
41
133
9
2094
100
89
98
(Gln-synt_C);(Gln-synt_N)
1
36
62
36
62
11
1055
100
74
100
(Gly_radical);(PFL-like)
1
20
34
21
35
14
2785
94
94
95
(Glyco_hydro_2);(Glyco_hydro_2_C)
1
72
168
72
169
6
823
99
92
100
(Glyco_hydro_2);(Glyco_hydro_2_N)
1
79
172
81
194
6
218
98
91
98
(Glyco_hydro_20);(Glyco_hydro_20b)
1
22
49
22
50
11
767
94
94
100
(Glyco_hydro_2_C);(Glyco_hydro_2_N)
1
72
184
74
187
8
1614
99
92
97
(Glyco_hydro_3);(Glyco_hydro_3_C)
1
49
136
49
139
4
1891
100
96
100
(Glyco_hydro_30);(Glyco_hydro_30C)
1
22
63
22
65
6
827
95
87
100
(Glyco_hydro_32C);(Glyco_hydro_32N)
1
23
64
25
71
8
1556
97
97
92
(Glyco_tran_28_C);(Glyco_transf_28)
1
26
33
26
36
2
574
94
94
100
(Glyco_transf_4);(Glycos_transf_1)
1
31
55
31
55
6
766
96
95
100
(Glycos_trans_3N);(Glycos_transf_3)
1
29
89
29
89
6
1048
100
99
100
(Glycos_trans_3N);(Glycos_transf_3)
2
29
88
29
89
6
267
89
95
100
(Gp_dh_C);(Gp_dh_N)
1
98
197
99
198
6
463
91
96
99
(Gp_dh_C);(Gp_dh_N)
2
97
196
99
198
6
234
91
95
98
(Gp_dh_C);(Gp_dh_N)
3
95
192
99
198
6
151
100
99
96
(H2TH);(zf-FPG_IleRS)
1
20
91
20
93
16
603
98
98
100
(HABP4_PAI-RBP1);(KH_2)
1
23
24
30
43
60
121
100
21
77
(HABP4_PAI-RBP1);(Ribosomal_S3_C)
1
37
38
40
53
6
783
100
21
92
(HABP4_PAI-RBP1);(Ribosomal_S5)
1
37
39
39
52
6
241
100
23
95
(HATPase_c);(HSP90)
1
73
371
78
479
2
1099
100
95
94
(HATPase_c);(HisKA)
1
28
38
32
47
12
428
100
95
88
(HEAT_2);(MitMem_reg)
1
35
35
66
66
51
124
94
9
53
(HHH_5);(Rad51)
1
22
38
22
38
17
242
39
16
100
(HH_signal);(Hint)
1
24
29
24
29
20
293
97
69
100
(HMGL-like);(PYC_OADA)
1
22
35
22
41
18
2524
80
80
100
(HTH_9);(RNA_pol_3_Rpc31)
1
22
22
30
30
17
639
100
50
73
(HTH_9);(RNA_pol_Rpb1_1)
1
31
31
31
31
27
342
100
48
100
(Helicase_C);(RecQ_Zn_bind)
1
22
31
22
31
16
650
100
90
100
(Helicase_C);(ResIII)
1
47
57
51
62
10
448
100
72
92
(Helicase_C_2);(Ssl1)
1
37
40
37
40
41
483
98
32
100
(Hexapep);(NTP_transferase)
1
22
23
23
24
11
294
100
26
96
(Hexokinase_1);(Hexokinase_2)
1
43
81
43
81
12
3509
98
93
100
(Histone);(Histone_H2A_C)
1
321
482
330
502
11
243
82
51
97
(Histone);(Histone_H2A_C)
2
293
452
330
502
10
606
85
49
89
(Histone);(Histone_H2A_C)
3
50
75
330
502
13
532
93
72
15
(Histone);(TAF)
1
310
486
311
490
7
1361
87
55
100
(Histone_H2A_C);(TAF)
1
269
427
280
451
7
229
86
50
96
(Hormone_2);(HRM)
1
36
42
37
43
5
310
100
26
97
(IBN_N);(Ras)
1
32
92
33
93
5
395
99
68
97
(IBN_N);(Xpo1)
1
20
23
26
35
9
892
100
96
77
(IF-2);(Ribosom_S12_S23)
1
23
23
23
23
19
415
100
13
100
(IF-2B);(NTP_transferase)
1
29
29
30
31
32
448
97
21
97
(IMS);(IMS_C)
1
30
290
46
455
8
429
100
100
65
(IMS);(IMS_HHH)
1
38
202
38
208
9
303
100
100
100
(IN_DBD_C);(Integrase_Zn)
1
23
23
27
27
38
199
100
26
85
(IN_DBD_C);(rve)
1
28
28
35
36
19
193
100
21
80
(Ig_3);(I-set)
1
53
58
96
105
10
265
100
95
55
(IlvC);(IlvN)
1
44
62
44
63
13
607
100
73
100
(IlvC);(IlvN)
2
42
60
44
63
14
445
97
72
95
(IlvC);(IlvN)
3
21
25
44
63
25
261
76
4
48
(Img2);(MRP-63)
1
59
64
59
64
63
514
100
14
100
(Img2);(Ribosomal_L27A)
1
61
66
75
80
21
114
94
12
81
(Img2);(Ribosomal_L4)
1
61
66
76
81
17
165
100
14
80
(Inhibitor_I29);(Peptidase_C1)
1
22
28
22
28
18
739
100
96
100
(Inhibitor_I9);(Peptidase_S8)
1
35
60
38
69
12
1142
95
100
92
(Ins145_P3_rec);(MIR)
1
94
105
117
128
15
740
100
21
80
(Ins145_P3_rec);(MIR)
2
43
43
117
128
16
279
100
5
37
(Ins145_P3_rec);(RIH_assoc)
1
95
95
112
112
73
257
100
2
85
(Ins145_P3_rec);(RYDR_ITPR)
1
90
90
124
134
72
197
100
2
73
(Ins145_P3_rec);(RYDR_ITPR)
2
72
80
124
134
7
167
100
19
58
(Integrase_Zn);(rve)
1
22
23
28
29
24
138
100
39
79
(Interfer-bind);(Tissue_fac)
1
28
51
34
70
11
462
94
92
82
(Internalin_N);(LRR_4)
1
25
25
42
45
13
429
88
76
60
(Ion_trans);(RR_TM4-6)
1
95
95
95
95
21
422
100
2
100
(Ion_trans);(RR_TM4-6)
2
65
65
95
95
33
1093
100
3
68
(JAB);(MitMem_reg)
1
95
98
104
107
13
246
99
29
91
(JAB);(PC_rep)
1
64
64
73
73
21
184
100
20
88
(JAB);(Prot_ATP_ID_OB)
1
23
23
71
71
67
303
70
13
32
(JAB);(Sec63)
1
23
28
26
31
38
180
68
54
88
(JAB);(VWA_2)
1
74
74
74
74
48
604
100
20
100
(JmjC);(JmjN)
1
26
461
27
466
23
683
99
99
96
(KAsynt_C_assoc);(Ketoacyl-synt_C)
1
56
80
56
80
8
2408
99
80
100
(KAsynt_C_assoc);(ketoacyl-synt)
1
56
80
58
82
8
953
99
80
97
(KAsynt_C_assoc);(ketoacyl-synt)
2
45
68
58
82
9
169
96
79
78
(KH_1);(Ribosomal_S11)
1
30
30
37
37
62
288
100
17
81
(KH_2);(Ribosomal_S10)
1
322
341
784
1116
12
148
100
10
41
(KH_2);(Ribosomal_S14)
1
217
491
776
1107
12
118
100
15
28
(KH_2);(S10_plectin)
1
279
280
279
292
20
840
100
8
100
(KOW);(Ribosomal_L18A)
1
237
238
241
254
18
245
100
17
98
(KOW);(Ribosomal_L34e)
1
272
273
276
289
23
324
100
12
99
(KOW);(Ribosomal_L6)
1
81
81
88
88
33
173
100
2
92
(KOW);(Ribosomal_L7Ae)
1
250
251
270
283
24
277
100
14
93
(KOW);(Ribosomal_S17_N)
1
28
28
318
331
24
171
64
18
9
(KOW);(Tim44)
1
23
24
55
60
65
109
100
25
42
(Kinesin);(Tubulin)
1
56
56
74
74
26
184
98
27
76
(Kinesin);(Tubulin_C)
1
58
58
75
75
25
123
98
22
77
(Kunitz_BPTI);(Trypsin)
1
41
97
44
103
15
547
99
98
93
(L51_S25_CI-B8);(MRP-63)
1
58
63
58
63
64
184
98
14
100
(L51_S25_CI-B8);(MRP-S26)
1
47
48
47
48
78
377
100
4
100
(L51_S25_CI-B8);(Ribonucleas_3_3)
1
62
67
63
68
15
125
100
15
98
(L51_S25_CI-B8);(Ribosomal_L50)
1
68
73
68
73
12
613
100
15
100
(L51_S25_CI-B8);(Ribosomal_S17)
1
47
48
47
48
56
483
92
2
100
(LHC);(PRCH)
1
28
30
28
31
37
234
97
20
100
(LHC);(PRCH)
2
26
28
28
31
38
181
100
25
93
(LHC);(Photo_RC)
1
28
29
29
32
30
348
100
17
97
(LRR_4);(LRR_8)
1
158
206
172
230
2
726
99
80
92
(LRR_4);(LRR_8)
2
24
36
172
230
13
157
22
19
14
(LRR_4);(LRR_adjacent)
1
21
21
29
30
22
545
100
86
72
(LRR_8);(LRRCT)
1
41
58
58
94
8
179
97
93
71
(LRR_8);(LRRNT)
1
100
110
129
156
4
640
98
80
78
(LRR_8);(LRRNT_2)
1
22
29
42
52
14
790
100
90
52
(LRR_9);(RRM_1)
1
43
43
49
49
26
532
93
14
88
(Ldh_1_C);(Ldh_1_N)
1
143
296
145
298
9
1655
100
97
99
(Ldh_1_C);(Ldh_1_N)
2
142
295
145
298
9
909
97
96
98
(Ldh_1_C);(Ldh_1_N)
3
84
191
145
298
16
234
95
91
58
(Lectin_C);(Ly49)
1
37
68
38
69
5
642
85
81
97
(Lig_chan);(Lig_chan-Glu_bd)
1
200
452
221
538
2
327
98
73
90
(Lig_chan);(PMP22_Claudin)
1
31
31
31
31
46
391
100
13
100
(Lipoprotein_18);(SmpA_OmlA)
1
29
46
29
50
57
138
100
59
100
(Lipoprotein_18);(YfiO)
1
30
50
30
51
89
1860
100
56
100
(M20_dimer);(Peptidase_M20)
1
45
61
48
64
5
1308
100
100
94
(M20_dimer);(Peptidase_M20)
2
33
44
48
64
4
430
98
100
69
(MA3);(U5_2-snRNA_bdg)
1
30
30
31
31
30
408
90
10
97
(MA3);(U6-snRNA_bdg)
1
25
25
29
29
30
145
88
8
86
(MCM);(MCM_OB)
1
41
41
43
43
26
411
98
34
95
(MCM);(MCM_OB)
2
36
36
43
43
23
340
100
33
84
(MCM_N);(MCM_OB)
1
53
54
54
55
11
496
100
48
98
(MCM_N);(MCM_OB)
2
39
39
54
55
15
175
100
31
72
(MCM_N);(Sld5)
1
23
23
23
23
11
453
100
39
100
(MCM_N);(Sld5)
2
21
21
23
23
20
282
100
38
91
(MHC_I);(V-set)
1
153
269
182
304
12
389
96
44
84
(MHC_I);(V-set)
2
29
48
182
304
20
354
79
40
16
(MHC_II_alpha);(MHC_II_beta)
1
162
221
164
226
10
922
99
97
99
(MHC_II_alpha);(V-set)
1
53
75
58
81
17
245
93
31
91
(MHC_II_beta);(V-set)
1
55
72
58
81
14
257
93
33
95
(MHC_I_3);(V-set)
1
24
80
28
86
14
375
95
72
86
(MIR);(RYDR_ITPR)
1
90
99
96
107
7
212
100
21
94
(MMS1_N);(WD40)
1
32
34
34
37
13
168
100
62
94
(MRP-63);(Ribosomal_L30)
1
58
63
58
63
63
667
100
14
100
(MRP-63);(Ribosomal_L4)
1
57
62
57
62
69
173
100
15
100
(MRP-63);(Ribosomal_L50)
1
26
26
58
63
69
110
100
12
45
(MRP-L27);(MRP-L47)
1
69
74
69
74
21
1044
100
14
100
(MRP-L27);(Ribosomal_L23)
1
69
74
69
74
14
629
100
14
100
(MRP-L27);(Ribosomal_L34)
1
66
71
67
72
21
443
100
14
99
(MRP-L28);(MRP-L46)
1
65
70
66
71
10
1204
100
16
98
(MRP-L28);(Ribosomal_S10)
1
56
61
56
61
73
1267
100
16
100
(MRP-L47);(Ribosomal_L23)
1
80
85
80
85
14
700
100
13
100
(MRP-L51);(Ribosomal_L27A)
1
56
61
57
62
88
290
100
15
98
(MRP-L51);(Ribosomal_L4)
1
58
63
58
63
88
1673
100
14
100
(MRP-S22);(MRP-S34)
1
47
48
47
48
82
262
100
4
100
(MRP-S22);(Ribosomal_S16)
1
47
48
47
48
88
670
100
4
100
(MRP-S22);(Ribosomal_S18)
1
47
48
47
48
88
407
94
4
100
(MRP-S22);(Ribosomal_S5_C)
1
47
48
47
48
87
271
98
4
100
(MRP-S23);(MRP-S35)
1
47
48
47
48
86
911
100
4
100
(MRP-S23);(Ribosomal_S2)
1
44
45
44
45
13
1678
100
4
100
(MRP-S23);(Ribosomal_S5)
1
48
49
48
49
13
483
100
4
100
(MRP-S24);(MRP-S28)
1
47
48
47
48
76
372
100
4
100
(MRP-S24);(MRP-S31)
1
47
48
47
48
3
286
100
4
100
(MRP-S24);(MRP-S33)
1
46
47
47
48
79
530
100
4
98
(MRP-S24);(Ribosomal_S10)
1
47
48
47
48
88
595
100
4
100
(MRP-S24);(Ribosomal_S14)
1
47
48
47
48
84
991
100
4
100
(MRP-S26);(MRP-S34)
1
47
48
47
48
78
183
90
0
100
(MRP-S26);(Ribosomal_S16)
1
48
49
51
52
19
311
100
4
94
(MRP-S26);(Ribosomal_S18)
1
50
51
50
51
9
453
100
4
100
(MRP-S26);(Ribosomal_S6)
1
50
51
51
52
9
899
100
2
98
(MRP-S27);(MRP-S34)
1
45
46
45
46
78
1308
100
4
100
(MRP-S28);(MRP-S31)
1
42
43
47
48
3
1036
100
5
89
(MRP-S28);(MRP-S33)
1
56
57
56
57
9
668
100
4
100
(MRP-S28);(Ribosomal_S10)
1
55
56
55
56
15
459
98
4
100
(MRP-S31);(MRP-S33)
1
46
47
47
48
3
667
100
4
98
(MRP-S31);(Ribosomal_S10)
1
47
48
47
48
3
249
100
4
100
(MRP-S32);(Ribosomal_L13)
1
57
62
58
63
68
244
100
15
98
(MRP-S32);(Ribosomal_L20)
1
57
62
58
63
68
362
100
15
98
(MRP-S32);(Ribosomal_L21p)
1
57
62
57
62
68
466
100
15
100
(MRP-S33);(Ribosomal_S14)
1
54
55
55
56
15
390
100
4
98
(MRP-S35);(Ribosomal_S2)
1
43
44
43
44
37
1037
100
5
100
(MRP_L53);(Ribosomal_L10)
1
56
61
56
61
68
692
100
15
100
(MSP);(PSII)
1
37
91
37
92
41
1298
100
29
100
(MSP);(PSII)
2
35
89
37
92
41
446
92
15
95
(MSP);(PSII)
3
29
78
37
92
46
742
100
27
78
(MSP);(Photo_RC)
1
37
91
37
92
46
603
100
23
100
(MSP);(Photo_RC)
2
36
90
37
92
46
577
100
29
97
(MSP);(PsbU)
1
23
77
23
78
32
451
100
30
100
(MaoC_dehydrat_N);(MaoC_dehydratas)
1
29
32
32
37
2
1132
84
59
91
(Metallophos);(STPPase_N)
1
52
74
59
83
14
1913
100
91
88
(MitMem_reg);(PCI)
1
80
81
93
94
12
236
100
19
86
(MitMem_reg);(Prot_ATP_ID_OB)
1
36
36
71
71
51
254
86
19
51
(MitMem_reg);(Prot_ATP_ID_OB)
2
27
27
71
71
21
145
96
11
38
(MitMem_reg);(Rpn3_C)
1
59
59
76
76
27
656
100
12
78
(Mitoc_L55);(MRP-L28)
1
54
59
54
59
67
774
100
15
100
(Mitoc_L55);(MRP-L46)
1
54
59
54
59
67
1115
100
15
100
(Mitoc_L55);(Ribosomal_S10)
1
54
59
54
59
66
864
100
15
100
(Molybdop_Fe4S4);(Molybdopterin)
1
41
59
43
64
13
1382
100
56
95
(Molybdop_Fe4S4);(Molydop_binding)
1
37
55
38
58
10
437
100
58
97
(Molybdopterin);(Molydop_binding)
1
32
63
58
93
10
1897
100
89
55
(Mt_ATP-synt_B);(Mt_ATP-synt_D)
1
74
74
74
74
18
972
100
20
100
(Mt_ATP-synt_B);(OSCP)
1
43
43
66
66
86
327
100
9
65
(Mur_ligase_C);(Mur_ligase_M)
1
48
96
54
106
6
579
92
85
89
(MutS_III);(MutS_IV)
1
22
40
22
40
6
550
100
100
100
(MutS_III);(MutS_V)
1
26
44
26
44
19
886
95
93
100
(Myb_DNA-binding);(RRM_4)
1
38
38
39
39
21
320
92
11
97
(Myb_DNA-binding);(SKIP_SNW)
1
33
33
39
39
21
305
91
6
85
(Myb_DNA-binding);(SKIP_SNW)
2
27
27
39
39
32
377
89
11
69
(Myosin_head);(Myosin_N)
1
93
159
94
162
15
301
99
84
99
(NADH5_C);(Oxidored_q2)
1
114
114
117
117
3
492
99
15
97
(NADH5_C);(Oxidored_q3)
1
29
29
65
65
8
316
97
21
45
(NADH5_C);(Proton_antipo_M)
1
131
131
135
135
3
612
92
15
97
(NADH5_C);(Proton_antipo_M)
2
115
115
135
135
3
1002
80
11
85
(NADH_4Fe-4S);(NADH-G_4Fe-4S_3)
1
152
158
157
165
21
425
100
24
97
(NADHdh);(Oxidored_q3)
1
153
158
155
160
12
963
99
17
99
(NADHdh);(Oxidored_q4)
1
156
161
156
161
24
2163
99
17
100
(NADHdh);(Oxidored_q6)
1
147
152
147
152
16
793
99
16
100
(NAD_binding_11);(NAD_binding_2)
1
51
74
51
74
2
518
95
91
100
(NMT);(NMT_C)
1
20
130
20
130
33
1793
98
96
100
(NOGCT);(Ribosomal_L24e)
1
27
27
29
29
35
241
100
44
93
(NOGCT);(Ribosomal_L3)
1
31
31
31
31
35
514
100
48
100
(Neur_chan_LBD);(Neur_chan_memb)
1
145
259
154
287
1
361
100
63
94
(Neur_chan_LBD);(Neur_chan_memb)
2
85
87
154
287
3
148
100
24
55
(NiFeSe_Hases);(Oxidored_q6)
1
45
147
47
159
4
1739
98
92
96
(NiFe_hyd_SSU_C);(NiFeSe_Hases)
1
27
115
29
131
6
1228
90
89
93
(NiFe_hyd_SSU_C);(Oxidored_q6)
1
20
62
24
96
32
675
98
95
83
(Nop);(Ribosomal_L7Ae)
1
55
58
56
59
18
498
100
29
98
(ORC2);(ORC3_N)
1
29
29
29
29
9
877
86
7
100
(ORC2);(ORC5_C)
1
28
28
28
28
17
689
54
4
100
(ORC3_N);(ORC4_C)
1
27
27
28
28
9
339
22
4
96
(ORC3_N);(ORC5_C)
1
28
28
28
28
9
1062
61
4
100
(ORC4_C);(ORC5_C)
1
29
29
29
29
11
919
86
7
100
(OTCace);(OTCace_N)
1
71
182
72
186
8
2143
100
98
99
(OTCace);(OTCace_N)
2
71
183
72
186
8
469
98
98
99
(Oxidored_q2);(Oxidored_q3)
1
156
161
156
161
12
2664
99
17
100
(Oxidored_q2);(Oxidored_q4)
1
151
156
154
159
13
409
99
18
98
(Oxidored_q2);(Proton_antipo_M)
1
158
163
158
163
9
1638
99
17
100
(Oxidored_q3);(Oxidored_q4)
1
155
160
156
161
12
1626
99
17
99
(Oxidored_q3);(Proton_antipo_M)
1
151
156
154
159
12
622
99
18
98
(Oxidored_q4);(Oxidored_q6)
1
89
94
113
118
25
377
100
17
79
(PARP);(PARP_reg)
1
25
88
28
98
33
1205
100
94
89
(PBP);(RF-1)
1
48
53
57
62
63
597
100
15
84
(PBP);(Ribosomal_L18p)
1
59
64
59
64
4
479
97
14
100
(PBP_dimer);(Transpeptidase)
1
54
139
55
156
11
964
100
93
98
(PCI);(RPN7)
1
40
40
81
82
20
129
100
22
49
(PCNA_C);(PCNA_N)
1
110
157
115
162
9
863
99
80
96
(PCNA_C);(PCNA_N)
2
104
149
115
162
11
664
90
62
90
(PDCD9);(Ribosomal_L17)
1
58
63
58
63
75
359
100
14
100
(PDCD9);(Ribosomal_L2)
1
55
60
58
63
73
371
100
15
95
(PDCD9);(Ribosomal_L23)
1
58
63
58
63
75
519
100
14
100
(PGM_PMM_I);(PGM_PMM_II)
1
29
79
30
92
10
803
94
90
97
(PGM_PMM_I);(PGM_PMM_III)
1
27
76
29
91
9
470
93
89
93
(PGM_PMM_II);(PGM_PMM_III)
1
27
76
29
91
9
1223
93
89
93
(PGM_PMM_III);(PGM_PMM_IV)
1
27
79
27
83
3
683
94
92
100
(PI3K_C2);(PI3Ka)
1
27
160
29
257
28
802
100
91
93
(PI3_PI4_kinase);(PI3K_rbd)
1
24
98
30
258
24
252
100
87
80
(PI3_PI4_kinase);(PI3Ka)
1
38
184
41
285
2
1067
99
90
93
(PK);(PK_C)
1
64
145
64
145
12
1403
100
97
100
(POTRA);(SmpA_OmlA)
1
29
49
29
50
74
336
100
55
100
(POTRA);(YfiO)
1
30
51
30
51
17
524
100
57
100
(PQQ_2);(PQQ_3)
1
24
28
30
52
2
522
96
68
80
(PQQ_2);(PQQ_3)
2
21
22
30
52
77
1176
100
59
70
(PRO8NT);(SKIP_SNW)
1
37
37
39
39
32
265
92
11
95
(PROCN);(SKIP_SNW)
1
40
40
40
40
32
1401
92
10
100
(PROCN);(WD40)
1
34
34
40
40
7
238
91
12
85
(PROCN);(WD40)
2
29
29
40
40
7
186
90
10
72
(PROCT);(Sec63)
1
35
40
37
42
41
886
68
40
95
(PRY);(SPRY)
1
45
59
45
59
13
1209
95
64
100
(PSI);(Sema)
1
45
45
46
46
9
409
89
69
98
(PSII);(Ycf9)
1
42
90
42
97
25
435
100
21
100
(PSII_Ycf12);(Ycf9)
1
33
87
33
88
27
398
100
21
100
(PSI_8);(PSI_PsaH)
1
26
32
26
32
32
321
100
19
100
(PSI_PsaE);(PSI_PsaF)
1
28
33
65
71
36
245
100
24
43
(PSI_PsaF);(PSI_PsaJ)
1
68
79
68
79
28
656
100
28
100
(PapD_C);(PapD_N)
1
33
43
42
53
16
528
98
91
79
(Peptidase_M16);(Peptidase_M16_C)
1
104
174
110
194
7
874
99
72
95
(Peptidase_M16);(Peptidase_M16_C)
2
31
41
110
194
49
2641
100
54
28
(Peptidase_M16);(Peptidase_M16_M)
1
25
52
27
60
18
1257
100
79
93
(Peptidase_M16);(UCR_14kD)
1
45
65
48
74
25
366
80
55
94
(Peptidase_M16);(UCR_TM)
1
46
79
47
83
22
472
100
68
98
(Peptidase_M16);(Ubiq-Cytc-red_N)
1
31
62
31
63
23
738
100
71
100
(Peptidase_M16_C);(Peptidase_M16_M)
2
25
52
32
65
7
3790
100
79
78
(Peptidase_M16_C);(UCR_TM)
1
44
71
47
83
24
307
100
65
94
(Peptidase_M16_C);(UCR_UQCRX_QCR9)
1
33
51
37
59
13
149
96
61
89
(Peptidase_M16_C);(Ubiq-Cytc-red_N)
1
31
61
31
64
19
652
100
70
100
(Peptidase_M16_C);(Ubiq-Cytc-red_N)
2
25
48
31
64
11
401
100
73
81
(Peptidase_M16_C);(UcrQ)
1
52
90
52
91
10
448
100
67
100
(Peptidase_M27);(Toxin_trans)
1
25
39
27
42
16
1086
100
90
93
(Peptidase_M28);(TFR_dimer)
1
20
104
20
104
21
785
99
93
100
(Peptidase_S9);(Peptidase_S9_N)
1
27
74
27
74
9
3381
97
93
100
(Phosphodiest);(Somatomedin_B)
1
24
55
25
58
28
525
89
84
96
(Photo_RC);(PRC)
1
42
174
42
177
31
210
100
81
100
(Photo_RC);(PRC)
2
41
173
42
177
31
164
96
83
98
(Photo_RC);(PRCH)
1
38
170
42
177
34
1589
100
86
90
(Photo_RC);(PRCH)
2
38
170
42
177
34
434
96
85
90
(Photo_RC);(PSII)
1
47
101
47
102
16
2195
100
43
100
(Photo_RC);(PSII)
2
43
97
47
102
54
764
100
45
91
(Photo_RC);(PsbH)
1
44
98
44
99
69
210
100
33
100
(Photo_RC);(PsbI)
1
45
99
45
100
63
722
100
24
100
(Photo_RC);(PsbJ)
1
34
88
35
90
56
146
100
24
97
(Photo_RC);(PsbL)
1
44
98
44
99
77
402
100
26
100
(Photo_RC);(PsbL)
2
44
98
44
99
77
252
100
26
100
(Photo_RC);(PsbM)
1
25
79
35
90
36
171
100
23
71
(Photo_RC);(PsbT)
1
44
98
44
99
44
217
100
27
100
(Photo_RC);(PsbT)
2
44
97
44
99
44
425
100
24
100
(Photo_RC);(PsbX)
1
43
97
43
98
34
219
100
25
100
(Pico_P1A);(Rhv)
1
162
250
168
257
16
396
98
38
96
(Pico_P1A);(Rhv)
2
146
222
168
257
35
532
99
33
87
(Pkinase);(Pkinase_C)
1
39
82
45
97
12
1280
96
96
87
(Plug);(TonB_dep_Rec)
1
60
115
60
115
8
3437
98
96
100
(Plug_translocon);(Sec61_beta)
1
38
40
38
40
5
353
95
30
100
(Plug_translocon);(SecE)
1
43
45
44
46
5
280
96
29
98
(Pr_beta_C);(Proteasome)
1
113
343
116
407
20
635
93
69
97
(Pr_beta_C);(Proteasome)
2
36
37
116
407
30
501
100
22
31
(Pr_beta_C);(Proteasome)
3
29
76
116
407
74
153
100
79
25
(Pre-SET);(SET)
1
24
49
27
54
15
1742
98
98
89
(ProRS-C_1);(tRNA-synt_2b)
1
28
74
28
74
11
968
100
96
100
(Proteasome);(Proteasome_A_N)
1
150
384
151
446
26
231
100
73
99
(Proteasome);(Proteasome_A_N)
2
90
166
151
446
21
472
100
63
60
(Proteasome);(Proteasome_A_N)
3
79
307
151
446
22
152
100
79
52
(Proteasome);(Proteasome_A_N)
4
28
94
151
446
22
162
100
87
19
(Proteasome);(Proteasome_A_N)
5
21
22
151
446
26
123
100
36
14
(Proton_antipo_M);(Proton_antipo_N)
1
151
156
154
159
11
251
88
14
98
(PsaA_PsaB);(PSI_8)
1
69
80
69
80
29
524
100
25
100
(PsaA_PsaB);(PSI_PSAK)
1
67
78
68
79
12
583
100
19
99
(PsaA_PsaB);(PSI_PsaE)
1
78
89
78
89
45
297
100
19
100
(PsaA_PsaB);(PSI_PsaE)
2
63
64
78
89
50
354
98
16
81
(PsaA_PsaB);(PSI_PsaF)
1
71
82
71
82
28
850
100
27
100
(PsaA_PsaB);(PSI_PsaF)
2
69
80
71
82
28
913
100
29
97
(PsaA_PsaB);(PSI_PsaH)
1
26
32
26
32
32
761
100
22
100
(PsaA_PsaB);(PSI_PsaJ)
1
57
65
72
83
32
114
100
29
79
(PsaA_PsaB);(PSI_PsaJ)
2
53
57
72
83
30
118
100
21
74
(PsaA_PsaB);(PsaD)
1
78
89
78
89
52
796
100
26
100
(PsaA_PsaB);(PsaD)
2
78
89
78
89
52
711
100
27
100
(PsaA_PsaB);(PsaL)
1
73
84
73
84
34
534
100
25
100
(PsaA_PsaB);(PsaL)
2
70
81
73
84
34
294
100
25
96
(PsaA_PsaB);(PsaM)
1
48
53
48
53
34
902
100
25
100
(PsaD);(PSI_PsaE)
1
71
82
74
85
50
146
100
20
96
(PsaD);(PSI_PsaH)
1
20
23
20
23
35
558
100
17
100
(PsaD);(PsaL)
1
67
78
68
79
34
418
100
27
99
(PsaL);(PSI_8)
1
69
80
69
80
29
212
100
25
100
(PsaL);(PSI_PsaH)
1
26
32
26
32
32
1589
100
22
100
(PsaM);(PSI_8)
1
41
46
43
48
26
249
100
28
95
(PsbH);(PSII)
1
44
97
44
98
69
1473
100
33
100
(PsbH);(PsbX)
1
42
96
43
98
34
265
100
22
98
(PsbI);(PSII)
1
41
94
42
97
60
433
100
23
98
(PsbJ);(PSII_Ycf12)
1
28
81
28
83
28
159
100
19
100
(PsbJ);(PsbK)
1
35
89
35
90
30
137
100
21
100
(PsbK);(PSII)
1
45
99
45
100
50
737
100
32
100
(PsbK);(PSII_Ycf12)
1
33
86
33
88
31
504
100
22
100
(PsbK);(Ycf9)
1
42
96
42
97
25
263
100
19
100
(PsbL);(PSII)
1
44
98
44
99
72
605
100
27
100
(PsbL);(PsbM)
1
43
97
43
98
31
797
100
26
100
(PsbL);(PsbT)
1
44
98
44
99
31
592
100
23
100
(PsbM);(PsbT)
1
43
97
43
98
28
225
100
15
100
(PsbT);(PSII)
1
34
81
40
95
44
146
85
10
85
(PsbT);(PSII)
2
29
79
40
95
44
147
100
28
72
(PsbU);(PSII)
1
23
75
23
78
32
432
100
32
100
(PsbU);(PSII)
2
23
75
23
78
32
463
100
35
100
(Pyr_redox_2);(Pyr_redox_dim)
1
103
249
104
250
7
602
96
99
99
(Pyr_redox_2);(Pyr_redox_dim)
2
101
246
104
250
7
1160
100
99
97
(RAG1);(RAG2)
1
32
36
32
36
49
1560
100
22
100
(RF-1);(Ribosomal_L27A)
1
59
64
59
64
50
309
100
14
100
(RNA_POL_M_15KD);(RNA_pol_Rpb1_7)
1
115
221
116
241
40
318
100
58
99
(RNA_POL_M_15KD);(RNA_pol_Rpb2_2)
1
188
284
192
321
13
493
100
47
98
(RNA_POL_M_15KD);(TFIIF_alpha)
1
30
34
34
38
14
231
100
15
88
(RNA_pol_A_bac);(RNA_pol_L)
1
180
210
292
414
22
1377
99
36
62
(RNA_pol_A_bac);(RNA_pol_L)
2
40
51
292
414
40
148
100
43
14
(RNA_pol_A_bac);(RNA_pol_N)
1
204
294
205
336
27
888
100
57
100
(RNA_pol_A_bac);(RNA_pol_Rpb1_3)
1
253
306
288
414
14
602
99
30
88
(RNA_pol_A_bac);(RNA_pol_Rpb1_3)
2
32
87
288
414
81
303
100
92
11
(RNA_pol_A_bac);(RNA_pol_Rpb2_6)
1
288
397
494
750
34
1194
99
45
58
(RNA_pol_A_bac);(RNA_pol_Rpb2_6)
2
203
293
494
750
27
562
100
57
41
(RNA_pol_I_A49);(RNA_polI_A34)
1
38
42
38
42
42
1002
100
69
100
(RNA_pol_L);(RNA_pol_L_2)
1
41
42
41
42
20
862
100
50
100
(RNA_pol_L);(RNA_pol_Rpb1_2)
1
253
356
267
393
49
199
99
47
95
(RNA_pol_L);(RNA_pol_Rpb1_3)
1
239
292
287
413
28
187
99
30
83
(RNA_pol_L);(RNA_pol_Rpb1_3)
2
32
78
287
413
82
137
99
92
11
(RNA_pol_L);(RNA_pol_Rpb2_6)
1
321
430
329
457
10
421
99
44
98
(RNA_pol_L);(RNA_pol_Rpb2_6)
2
280
406
329
457
49
244
99
48
85
(RNA_pol_L_2);(RNA_pol_Rpb1_2)
1
202
290
204
333
26
224
100
45
99
(RNA_pol_L_2);(RNA_pol_Rpb1_3)
1
204
305
205
336
22
539
100
46
100
(RNA_pol_L_2);(RNA_pol_Rpb2_6)
1
201
291
204
333
26
252
100
57
99
(RNA_pol_L_2);(RNA_pol_Rpb8)
1
127
211
181
309
26
160
100
41
70
(RNA_pol_N);(RNA_polI_A34)
1
20
23
31
35
89
138
100
74
65
(RNA_pol_N);(RNA_pol_Rpb2_1)
1
164
251
201
330
20
229
100
61
82
(RNA_pol_N);(RNA_pol_Rpb2_6)
1
205
293
205
336
33
1344
100
56
100
(RNA_pol_Rbc25);(RNA_pol_Rpb2_7)
1
29
29
30
30
36
169
100
45
97
(RNA_pol_Rbc25);(RNA_pol_Rpb4)
1
33
33
33
33
28
657
100
52
100
(RNA_pol_Rpa2_4);(RNA_polI_A34)
1
35
39
36
40
89
240
100
67
97
(RNA_pol_Rpa2_4);(RNA_pol_Rpb1_4)
1
41
45
42
46
55
171
100
71
98
(RNA_pol_Rpb1_1);(RNA_pol_Rpb1_2)
1
89
111
139
183
15
118
100
40
64
(RNA_pol_Rpb1_1);(RNA_pol_Rpb1_5)
1
103
128
164
264
10
195
100
42
63
(RNA_pol_Rpb1_1);(RNA_pol_Rpb2_6)
1
463
639
492
741
10
388
90
44
94
(RNA_pol_Rpb1_1);(RNA_pol_Rpb2_7)
1
497
673
503
764
8
1536
90
43
99
(RNA_pol_Rpb1_1);(RNA_pol_Rpb5_C)
1
31
32
58
67
20
199
100
47
53
(RNA_pol_Rpb1_1);(SHS2_Rpb7-N)
1
67
73
128
155
8
223
100
64
52
(RNA_pol_Rpb1_1);(Sigma70_r1_2)
1
129
200
129
241
10
322
100
46
100
(RNA_pol_Rpb1_1);(Sigma70_r2)
1
144
223
145
268
10
766
100
48
99
(RNA_pol_Rpb1_1);(Sigma70_r3)
1
125
196
128
241
10
601
100
47
98
(RNA_pol_Rpb1_1);(Sigma70_r4)
1
66
138
117
227
33
139
100
72
56
(RNA_pol_Rpb1_1);(Spt5-NGN)
1
24
24
24
24
25
291
100
17
100
(RNA_pol_Rpb1_1);(TFIIE_alpha)
1
40
40
51
52
14
981
98
40
78
(RNA_pol_Rpb1_1);(TF_Zn_Ribbon)
1
50
54
55
60
21
279
100
30
91
(RNA_pol_Rpb1_2);(RNA_pol_Rpb1_3)
1
142
167
145
189
8
668
100
37
98
(RNA_pol_Rpb1_2);(RNA_pol_Rpb1_5)
1
144
170
154
199
12
222
100
38
94
(RNA_pol_Rpb1_2);(RNA_pol_Rpb2_6)
1
488
666
490
751
19
1274
91
44
100
(RNA_pol_Rpb1_2);(RNA_pol_Rpb2_7)
1
482
666
484
744
19
1401
90
45
100
(RNA_pol_Rpb1_2);(RNA_pol_Rpb6)
1
462
651
465
722
11
746
100
51
99
(RNA_pol_Rpb1_2);(SHS2_Rpb7-N)
1
40
44
188
246
26
193
100
75
21
(RNA_pol_Rpb1_2);(Sigma70_r3)
1
71
112
116
227
25
130
100
38
61
(RNA_pol_Rpb1_2);(TF_Zn_Ribbon)
1
54
58
54
59
21
459
100
28
100
(RNA_pol_Rpb1_3);(RNA_pol_Rpb1_4)
1
154
181
160
206
8
751
100
35
96
(RNA_pol_Rpb1_3);(RNA_pol_Rpb1_5)
1
153
179
158
203
8
220
100
37
97
(RNA_pol_Rpb1_3);(RNA_pol_Rpb2_6)
1
502
675
502
762
8
1032
90
42
100
(RNA_pol_Rpb1_3);(RNA_pol_Rpb6)
1
209
273
239
356
16
170
99
42
87
(RNA_pol_Rpb1_3);(RNA_pol_Rpb8)
1
191
280
192
322
28
1434
100
53
99
(RNA_pol_Rpb1_4);(RNA_pol_Rpb1_5)
1
159
186
167
215
9
539
100
35
95
(RNA_pol_Rpb1_4);(RNA_pol_Rpb2_2)
1
23
24
200
346
29
127
100
38
12
(RNA_pol_Rpb1_4);(RNA_pol_Rpb2_3)
1
244
361
498
753
9
250
99
53
49
(RNA_pol_Rpb1_4);(RNA_pol_Rpb2_45)
1
107
133
266
373
17
190
81
44
40
(RNA_pol_Rpb1_4);(RNA_pol_Rpb2_5)
1
160
248
161
291
5
398
100
44
99
(RNA_pol_Rpb1_4);(RNA_pol_Rpb2_6)
1
503
680
507
766
9
486
90
42
99
(RNA_pol_Rpb1_4);(RNA_pol_Rpb8)
1
33
34
155
283
25
131
100
65
21
(RNA_pol_Rpb1_4);(TFIIS_C)
1
115
198
143
273
36
533
95
48
80
(RNA_pol_Rpb1_4);(TFIIS_C)
2
29
33
143
273
24
275
91
45
20
(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_3)
1
495
670
498
756
7
621
90
43
99
(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_45)
1
278
358
287
411
16
179
81
39
97
(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_5)
1
76
160
157
285
13
207
100
46
48
(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_6)
1
208
305
501
759
19
386
100
49
42
(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_6)
2
77
103
501
759
18
123
67
28
15
(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_7)
1
489
667
495
753
7
318
90
43
99
(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_C)
1
202
312
202
333
26
1383
100
57
100
(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)
1
82
125
189
317
31
124
100
62
43
(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
440
652
468
718
11
206
99
52
94
(RNA_pol_Rpb1_5);(TFIIS_C)
1
32
36
43
49
30
427
92
53
74
(RNA_pol_Rpb1_6);(RNA_pol_Rpb5_C)
1
116
223
117
243
35
578
100
57
99
(RNA_pol_Rpb1_6);(RNA_pol_Rpb6)
1
97
199
117
241
35
162
100
60
83
(RNA_pol_Rpb1_6);(RNA_pol_Rpb8)
1
50
54
107
221
33
349
100
28
47
(RNA_pol_Rpb1_7);(RNA_pol_Rpb2_2)
1
70
130
113
237
40
162
100
48
62
(RNA_pol_Rpb2_1);(RNA_pol_Rpb2_2)
1
128
146
150
196
14
476
98
18
85
(RNA_pol_Rpb2_1);(RNA_pol_Rpb2_3)
1
140
160
143
171
9
843
98
20
98
(RNA_pol_Rpb2_1);(RNA_pol_Rpb2_6)
1
136
154
147
176
9
412
99
19
93
(RNA_pol_Rpb2_1);(Sigma70_r3)
1
94
165
113
210
14
323
100
53
83
(RNA_pol_Rpb2_1);(TFIIB)
1
53
57
53
58
12
350
100
25
100
(RNA_pol_Rpb2_2);(RNA_pol_Rpb2_3)
1
143
166
147
188
9
381
98
23
97
(RNA_pol_Rpb2_2);(RNA_pol_Rpb2_45)
1
81
97
103
135
25
135
99
25
79
(RNA_pol_Rpb2_2);(RNA_pol_Rpb2_5)
1
35
42
36
46
78
134
100
19
97
(RNA_pol_Rpb2_2);(Sigma70_r1_2)
1
42
46
97
188
21
146
98
26
43
(RNA_pol_Rpb2_2);(TFIIF_alpha)
1
36
40
39
43
14
736
100
15
92
(RNA_pol_Rpb2_2);(TFIIS_C)
1
100
184
116
242
36
166
95
39
86
(RNA_pol_Rpb2_3);(RNA_pol_Rpb2_4)
1
45
54
46
58
61
361
100
30
98
(RNA_pol_Rpb2_3);(RNA_pol_Rpb2_5)
1
41
50
42
54
34
261
100
28
98
(RNA_pol_Rpb2_3);(RNA_pol_Rpb2_6)
1
96
110
153
196
56
381
97
20
63
(RNA_pol_Rpb2_3);(RNA_pol_Rpb2_6)
2
52
61
153
196
22
895
100
31
34
(RNA_pol_Rpb2_4);(RNA_pol_Rpb2_5)
1
41
50
42
54
33
1095
100
28
98
(RNA_pol_Rpb2_4);(RNA_pol_Rpc4)
1
30
30
30
30
21
283
100
50
100
(RNA_pol_Rpb2_6);(RNA_polI_A34)
1
36
40
36
40
89
621
100
68
100
(RNA_pol_Rpb2_6);(RNA_pol_Rpb2_7)
1
150
173
156
199
19
417
98
24
96
(RNA_pol_Rpb2_6);(Sigma70_r3)
1
127
206
128
241
14
558
100
50
99
(RNA_pol_Rpb2_6);(Sigma70_r4)
1
124
204
127
239
24
341
100
52
98
(RNA_pol_Rpb2_6);(TFIIB)
1
52
56
53
58
20
306
100
25
98
(RNA_pol_Rpb2_6);(TF_Zn_Ribbon)
1
54
58
54
59
21
653
100
24
100
(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)
1
280
364
472
727
11
209
99
42
59
(RNA_pol_Rpb2_7);(S1)
1
31
33
77
91
72
189
100
33
40
(RNA_pol_Rpb2_7);(SHS2_Rpb7-N)
1
105
114
183
241
7
160
100
54
57
(RNA_pol_Rpb2_7);(Sigma70_r3)
1
116
195
122
234
20
227
100
52
95
(RNA_pol_Rpb4);(S1)
1
126
143
127
182
8
603
100
33
99
(RNA_pol_Rpb4);(SHS2_Rpb7-N)
1
160
173
160
214
8
759
100
36
100
(RNA_pol_Rpb5_C);(RNA_pol_Rpb5_N)
1
47
49
48
50
29
311
100
27
98
(RNA_pol_Rpb6);(SHS2_Rpb7-N)
1
195
214
196
255
7
367
100
43
99
(RNA_pol_Rpc34);(RNA_pol_Rpc82)
1
26
26
31
31
11
499
100
54
84
(RNase_H);(RVT_connect)
1
55
339
55
373
32
425
100
94
100
(RNase_H);(RVT_thumb)
1
56
336
56
366
32
609
90
85
100
(RRM_4);(SKIP_SNW)
1
33
33
34
34
32
250
91
9
97
(RVT_1);(RVT_connect)
1
56
340
56
374
38
874
100
94
100
(RVT_1);(RVT_connect)
2
55
338
56
374
37
343
100
93
98
(RVT_1);(RVT_connect)
3
53
333
56
374
37
121
100
94
95
(RVT_1);(RVT_thumb)
1
56
338
57
375
35
243
100
94
98
(RVT_connect);(RVT_thumb)
1
55
346
55
373
35
380
100
94
100
(Ras);(RhoGEF)
1
22
36
23
37
16
1152
97
97
96
(Rep_fac_C);(RFC1)
1
21
21
21
21
79
1156
100
5
100
(Rhv);(VP4_2)
1
33
40
36
46
9
339
98
42
92
(Ribonuc_red_lgC);(Ribonuc_red_lgN)
1
24
79
27
87
6
1365
99
94
89
(Ribos_L4_asso_C);(Ribosomal_L18)
1
281
290
286
299
15
955
91
15
98
(Ribos_L4_asso_C);(Ribosomal_L28e)
1
125
125
151
151
14
166
86
8
83
(Ribos_L4_asso_C);(Ribosomal_L30_N)
1
274
275
280
293
13
388
88
15
98
(Ribos_L4_asso_C);(Ribosomal_L6e_N)
1
113
113
117
117
19
316
100
4
97
(Ribosom_S12_S23);(Ribosomal_S17)
1
36
123
82
201
27
217
100
36
44
(Ribosom_S12_S23);(Ribosomal_S30)
1
286
287
292
305
40
404
100
9
98
(Ribosomal_L10);(Ribosomal_L11)
1
199
210
360
376
6
176
100
15
55
(Ribosomal_L10);(Ribosomal_L11)
2
101
101
360
376
39
157
100
12
28
(Ribosomal_L13);(Ribosomal_L20)
1
609
825
617
845
14
316
99
14
99
(Ribosomal_L13);(Ribosomal_L3)
1
597
813
914
1214
1
146
99
13
65
(Ribosomal_L13);(Ribosomal_L3)
2
277
316
914
1214
4
226
100
11
30
(Ribosomal_L13);(Ribosomal_L35Ae)
1
278
290
287
300
4
223
100
16
97
(Ribosomal_L13e);(Ribosomal_L18)
1
240
249
251
264
30
222
100
12
96
(Ribosomal_L13e);(Ribosomal_L27A)
1
268
269
268
281
30
1432
100
13
100
(Ribosomal_L13e);(Ribosomal_L36e)
1
267
268
267
280
24
541
100
13
100
(Ribosomal_L13e);(Ribosomal_L4)
1
274
275
275
288
30
201
100
15
100
(Ribosomal_L14);(Ribosomal_L19)
1
615
840
619
847
15
787
99
13
99
(Ribosomal_L14);(Ribosomal_L24e)
1
302
364
302
376
20
527
100
13
100
(Ribosomal_L14);(Ribosomal_L3)
1
673
939
820
1111
1
216
100
11
82
(Ribosomal_L14e);(Ribosomal_L18A)
1
241
242
286
299
8
122
100
17
84
(Ribosomal_L14e);(Ribosomal_L6e)
1
273
274
281
294
9
482
100
16
97
(Ribosomal_L15e);(Ribosomal_L36e)
1
274
287
283
296
24
527
100
15
97
(Ribosomal_L15e);(Ribosomal_L44)
1
257
297
268
341
25
159
100
20
96
(Ribosomal_L15e);(Ribosomal_L7Ae)
1
251
288
259
332
25
553
100
15
97
(Ribosomal_L16);(Ribosomal_L25p)
1
464
683
469
691
15
464
100
12
99
(Ribosomal_L16);(Ribosomal_L27)
1
134
223
394
588
24
249
99
9
34
(Ribosomal_L16);(Ribosomal_TL5_C)
1
104
212
106
295
15
393
100
11
98
(Ribosomal_L17);(Ribosomal_L22)
1
127
292
615
836
15
127
100
7
21
(Ribosomal_L17);(Ribosomal_L32p)
1
608
832
619
847
11
336
99
13
98
(Ribosomal_L18);(Ribosomal_L27A)
1
280
316
285
358
18
784
100
12
98
(Ribosomal_L18);(Ribosomal_L28e)
1
146
146
147
147
14
223
100
8
99
(Ribosomal_L18);(Ribosomal_L30)
1
253
262
256
269
38
249
100
12
99
(Ribosomal_L18);(Ribosomal_L4)
1
291
358
298
369
18
181
100
13
98
(Ribosomal_L18A);(Ribosomal_L30_N)
1
274
275
284
297
13
170
100
16
96
(Ribosomal_L18p);(Ribosomal_L27)
1
48
53
435
643
69
672
100
15
11
(Ribosomal_L18p);(Ribosomal_L27)
2
44
138
435
643
28
116
100
6
10
(Ribosomal_L19);(Ribosomal_L3)
1
428
472
612
837
1
605
99
16
70
(Ribosomal_L19);(Ribosomal_L3)
2
139
304
612
837
2
711
100
10
23
(Ribosomal_L2);(Ribosomal_L2_C)
1
54
54
57
62
18
1188
100
15
95
(Ribosomal_L2);(Ribosomal_L37ae)
1
281
321
282
355
20
474
100
11
100
(Ribosomal_L2);(Ribosomal_L9_C)
1
20
20
36
36
79
166
100
10
56
(Ribosomal_L20);(Ribosomal_L21p)
1
588
804
616
845
14
960
99
13
95
(Ribosomal_L20);(Ribosomal_L21p)
2
25
34
616
845
44
895
100
6
4
(Ribosomal_L20);(Ribosomal_L32p)
1
203
220
586
808
18
115
100
10
35
(Ribosomal_L21e);(Ribosomal_L29e)
1
248
249
248
261
27
485
100
11
100
(Ribosomal_L21e);(Ribosomal_L5e)
1
267
293
269
342
21
825
100
10
99
(Ribosomal_L22);(Ribosomal_L32p)
1
615
840
617
842
11
466
99
14
100
(Ribosomal_L22);(TGS)
1
59
64
59
64
1
349
100
14
100
(Ribosomal_L22);(Tim44)
1
58
63
59
64
86
187
100
14
98
(Ribosomal_L23);(Ribosomal_L29)
1
829
1103
845
1139
21
428
99
13
98
(Ribosomal_L23);(Ribosomal_L39)
1
278
337
284
355
31
227
100
11
98
(Ribosomal_L24e);(Ribosomal_L3)
1
290
349
291
364
20
248
100
13
100
(Ribosomal_L26);(Ribosomal_L4)
1
274
275
295
366
31
186
100
17
93
(Ribosomal_L27A);(Ribosomal_L35p)
1
582
781
602
831
18
777
99
12
97
(Ribosomal_L27A);(Ribosomal_L36e)
1
251
252
263
276
29
231
100
13
95
(Ribosomal_L27e);(Ribosomal_L34e)
1
265
266
270
283
22
341
100
13
98
(Ribosomal_L27e);(Ribosomal_L7Ae)
1
264
265
266
279
22
293
100
13
99
(Ribosomal_L28);(Ribosomal_L9_N)
1
453
640
493
682
5
230
100
11
92
(Ribosomal_L28);(Ribosomal_L9_N)
2
21
21
493
682
52
161
100
14
4
(Ribosomal_L28e);(Ribosomal_L32e)
1
151
151
153
153
13
717
100
9
99
(Ribosomal_L28e);(Ribosomal_L4)
1
152
152
153
153
13
714
100
9
99
(Ribosomal_L2_C);(Ribosomal_L37ae)
1
280
320
282
355
30
840
100
11
99
(Ribosomal_L2_C);(Ribosomal_L9_C)
1
167
167
239
239
29
149
100
13
70
(Ribosomal_L2_C);(Ribosomal_S6)
1
32
57
340
514
16
123
100
18
9
(Ribosomal_L3);(Ribosomal_L32p)
1
44
47
58
63
69
126
100
21
76
(Ribosomal_L31);(Ribosomal_L5)
1
321
476
349
516
5
238
99
12
92
(Ribosomal_L31);(Ribosomal_L5_C)
1
323
484
352
519
5
732
99
11
92
(Ribosomal_L31);(Ribosomal_S13)
1
211
355
250
410
18
361
99
12
84
(Ribosomal_L31);(Ribosomal_S19)
1
226
346
252
386
5
380
99
14
90
(Ribosomal_L32p);(TGS)
1
57
62
59
64
1
246
100
15
97
(Ribosomal_L33);(Ribosomal_L35p)
1
382
551
579
778
4
138
99
10
66
(Ribosomal_L34e);(Ribosomal_L7Ae)
1
269
270
271
284
23
225
100
13
99
(Ribosomal_L35Ae);(Ribosomal_L6e)
1
275
276
283
296
10
584
100
16
97
(Ribosomal_L36e);(Ribosomal_L7Ae)
1
232
233
237
250
24
254
100
17
98
(Ribosomal_L37ae);(Ribosomal_L7Ae)
1
267
280
272
285
26
161
100
12
98
(Ribosomal_L37ae);(Ribosomal_S3Ae)
1
36
38
48
61
59
133
100
18
75
(Ribosomal_L37e);(Ribosomal_L39)
1
259
320
277
350
33
188
100
10
94
(Ribosomal_L4);(Ribosomal_L50)
1
66
71
67
72
12
199
100
14
99
(Ribosomal_L40e);(Ribosomal_L6)
1
243
244
244
257
2
385
100
12
100
(Ribosomal_L5);(Ribosomal_L5_C)
1
29
32
29
32
25
1968
100
34
100
(Ribosomal_L5);(Stm1_N)
1
27
28
32
45
42
451
100
29
84
(Ribosomal_L5_C);(Ribosomal_L5e)
1
277
310
285
359
28
217
100
11
97
(Ribosomal_L5_C);(Ribosomal_S13)
1
289
440
610
822
24
256
100
10
47
(Ribosomal_L5_C);(Ribosomal_S13)
2
118
143
610
822
21
230
100
8
19
(Ribosomal_L5_C);(Ribosomal_S13)
3
83
83
610
822
34
154
100
1
14
(Ribosomal_L7Ae);(Ribosomal_S13_N)
1
57
57
111
111
31
119
100
0
51
(Ribosomal_L7Ae);(Ribosomal_S15)
1
98
98
162
162
1
226
100
1
60
(Ribosomal_L7Ae);(Ribosomal_S27)
1
270
271
278
291
20
537
100
10
97
(Ribosomal_L7Ae);(S10_plectin)
1
90
90
253
266
34
176
100
9
36
(Ribosomal_L7Ae);(S4)
1
31
31
35
35
41
209
100
3
89
(Ribosomal_L7Ae);(WD40)
1
30
30
46
46
43
217
100
3
65
(Ribosomal_L7Ae);(WD40)
2
23
23
46
46
48
186
100
4
50
(Ribosomal_L9_C);(Ribosomal_S6)
1
138
138
196
196
27
163
100
14
70
(Ribosomal_S10);(Ribosomal_S14)
1
865
1190
872
1209
11
775
100
13
99
(Ribosomal_S10);(Ribosomal_S9)
1
719
1023
861
1184
11
152
99
10
84
(Ribosomal_S11);(Ribosomal_S18)
1
292
583
452
753
48
262
100
8
65
(Ribosomal_S11);(Ribosomal_S21)
1
399
425
410
442
12
1033
100
12
97
(Ribosomal_S11);(Ribosomal_S26e)
1
271
284
271
284
38
1089
100
9
100
(Ribosomal_S11);(Ribosomal_S28e)
1
166
166
179
179
30
255
100
5
93
(Ribosomal_S11);(Ribosomal_S3Ae)
1
343
352
345
358
22
730
100
9
99
(Ribosomal_S11);(Ribosomal_S7)
1
569
853
750
1064
17
207
100
12
76
(Ribosomal_S11);(Ribosomal_S7)
2
25
28
750
1064
27
162
96
7
3
(Ribosomal_S13);(Ribosomal_S19)
1
800
1119
827
1161
14
384
100
10
97
(Ribosomal_S13);(Ribosomal_S19e)
1
306
319
316
329
25
436
100
10
97
(Ribosomal_S13);(Ribosomal_S25)
1
278
291
295
308
19
188
100
10
94
(Ribosomal_S13);(Stm1_N)
1
24
25
32
45
66
293
100
32
75
(Ribosomal_S13_N);(Ribosomal_S27e)
1
339
348
343
356
26
480
100
9
99
(Ribosomal_S13_N);(Ribosomal_S7e)
1
312
313
325
338
12
182
100
9
96
(Ribosomal_S13_N);(Ribosomal_S8)
1
199
199
335
348
26
181
100
8
59
(Ribosomal_S13_N);(Ribosomal_S8)
2
127
128
335
348
28
195
100
11
38
(Ribosomal_S14);(Ribosomal_S19)
1
310
334
358
397
25
152
100
13
87
(Ribosomal_S14);(S10_plectin)
1
272
285
277
290
20
289
100
9
98
(Ribosomal_S17);(Ribosomal_S8)
1
452
746
858
1174
20
136
100
13
53
(Ribosomal_S17);(Ribosomal_S8)
2
184
185
858
1174
25
127
100
11
21
(Ribosomal_S17);(Ribosomal_S8e)
1
259
260
339
352
26
136
97
9
76
(Ribosomal_S17_N);(Ribosomal_S8e)
1
329
330
334
347
40
264
100
8
99
(Ribosomal_S17e);(Ribosomal_S2)
1
256
265
259
272
27
675
100
11
99
(Ribosomal_S17e);(WD40)
1
267
268
269
282
15
137
100
9
99
(Ribosomal_S18);(Ribosomal_S21)
1
201
208
402
433
12
182
99
9
50
(Ribosomal_S18);(Ribosomal_S21)
2
155
159
402
433
37
201
100
15
39
(Ribosomal_S18);(Ribosomal_S6)
1
584
889
592
909
10
785
99
10
99
(Ribosomal_S19);(Stm1_N)
1
25
26
32
45
51
165
100
27
78
(Ribosomal_S19e);(Ribosomal_S9)
1
305
318
317
330
24
207
100
10
96
(Ribosomal_S2);(Ribosomal_S21e)
1
261
270
262
275
3
1203
100
11
100
(Ribosomal_S2);(Ribosomal_S8)
1
101
379
166
449
40
260
99
5
61
(Ribosomal_S21e);(Ribosomal_S5)
1
287
288
289
302
7
222
100
10
99
(Ribosomal_S21e);(Ribosomal_S5_C)
1
292
293
292
305
7
517
100
10
100
(Ribosomal_S21e);(Ribosomal_S8)
1
283
296
291
304
7
244
100
10
97
(Ribosomal_S24e);(S4)
1
340
353
347
360
10
176
99
9
98
(Ribosomal_S25);(Ribosomal_S7)
1
295
308
296
309
19
588
100
10
100
(Ribosomal_S26e);(Ribosomal_S28e)
1
150
156
250
263
42
141
100
10
60
(Ribosomal_S26e);(Ribosomal_S3Ae)
1
267
276
271
284
32
239
100
9
99
(Ribosomal_S28e);(Ribosomal_S7)
1
346
347
348
361
30
976
100
9
99
(Ribosomal_S30);(Ribosomal_S4)
1
222
222
222
222
39
382
100
10
100
(Ribosomal_S30);(S4)
1
281
282
292
305
40
154
100
10
96
(Ribosomal_S3_C);(Ribosomal_S5)
1
200
221
726
1046
19
135
99
11
28
(Ribosomal_S4);(Ribosomal_S5_C)
1
364
667
767
1082
12
143
100
16
47
(Ribosomal_S4);(Ribosomal_S5_C)
2
231
231
767
1082
31
219
73
6
30
(Ribosomal_S4);(Ribosomal_S6)
1
29
81
35
121
86
152
2
0
83
(Ribosomal_S4);(Ribosomal_S8)
1
83
83
216
216
34
121
75
7
38
(Ribosomal_S4);(S4)
1
61
61
63
65
7
667
100
33
97
(Ribosomal_S5_C);(Ribosomal_S8)
1
537
848
859
1186
16
461
99
14
63
(Ribosomal_S5_C);(Ribosomal_S8)
2
304
305
859
1186
26
340
100
10
35
(Ribosomal_S7);(Ribosomal_S9)
1
876
1189
901
1234
17
312
100
11
97
(Ribosomal_S7);(S1)
1
20
20
22
22
78
579
100
15
91
(Ribosomal_S7e);(Ribosomal_S8)
1
334
347
336
349
12
473
100
9
99
(Ribosomal_S9);(WD40)
1
268
269
314
327
23
253
100
9
85
(Ribosomal_S9);(WD40)
2
30
30
314
327
40
294
100
3
10
(Ricin_B_lectin);(RIP)
1
21
48
21
50
19
377
100
98
100
(Rieske);(Ring_hydroxyl_A)
1
24
43
24
69
12
1176
93
93
100
(RuBisCO_large);(RuBisCO_large_N)
1
58
120
60
122
11
1529
99
83
97
(RuBisCO_large);(RuBisCO_large_N)
2
48
99
60
122
11
1127
100
88
80
(RuBisCO_large);(RuBisCO_small)
1
28
67
28
67
26
1329
99
81
100
(RuBisCO_large);(RuBisCO_small)
2
26
65
28
67
26
813
94
78
93
(RuBisCO_large_N);(RuBisCO_small)
1
27
66
28
67
26
325
95
79
96
(S-AdoMet_synt_C);(S-AdoMet_synt_M)
1
33
91
33
91
30
298
100
98
100
(S-AdoMet_synt_C);(S-AdoMet_synt_M)
2
33
91
33
91
30
1767
100
98
100
(S-AdoMet_synt_C);(S-AdoMet_synt_N)
1
33
91
33
91
36
451
100
98
100
(S-AdoMet_synt_C);(S-AdoMet_synt_N)
2
32
89
33
91
36
1589
100
98
97
(S-AdoMet_synt_M);(S-AdoMet_synt_N)
1
33
91
33
91
30
152
100
98
100
(S-AdoMet_synt_M);(S-AdoMet_synt_N)
2
32
89
33
91
30
924
100
98
97
(S1);(TF_Zn_Ribbon)
1
36
40
36
40
29
515
100
28
100
(S4);(WD40)
1
32
32
37
37
38
205
100
3
86
(S4);(WD40)
2
23
23
37
37
7
188
100
0
62
(SKIP_SNW);(WD40)
1
37
37
38
38
32
251
89
11
97
(SRP54);(SRP54_N)
1
49
73
53
77
8
760
95
92
92
(Sec61_beta);(SecE)
1
22
22
36
38
17
150
100
23
61
(Sec61_beta);(SecY)
1
38
40
38
40
17
459
95
30
100
(SecE);(SecY)
1
57
59
59
61
7
1320
97
37
97
(Semialdhyde_dh);(Semialdhyde_dhC)
1
41
80
41
81
7
903
100
100
100
(Seryl_tRNA_N);(tRNA-synt_2b)
1
24
41
24
42
10
466
95
90
100
(Shikimate_DH);(Shikimate_dh_N)
1
28
37
28
37
12
265
89
89
100
(Sigma70_r1_2);(Sigma70_r2)
1
48
61
50
67
27
720
100
52
96
(Sigma70_r2);(Sigma70_r3)
1
31
33
44
60
51
137
100
33
70
(Skp1);(Skp1_POZ)
1
37
50
38
55
29
136
94
80
97
(Skp1_POZ);(VHL_C)
1
27
66
28
68
30
123
95
83
96
(Skp1_POZ);(ubiquitin)
1
51
93
52
95
22
669
95
74
98
(Sld5);(SLD5_C)
1
25
26
25
26
26
497
100
46
100
(Sld5);(SLD5_C)
2
20
21
25
26
10
267
100
33
80
(Sod_Fe_C);(Sod_Fe_N)
1
94
183
94
183
5
266
95
87
100
(Sod_Fe_C);(Sod_Fe_N)
2
84
173
94
183
12
1152
99
97
89
(Sod_Fe_C);(Sod_Fe_N)
3
22
43
94
183
24
179
0
0
23
(Spt4);(Spt5-NGN)
1
30
30
30
30
19
852
100
37
100
(Ssl1);(Tfb4)
1
31
34
37
40
28
485
97
35
84
(SusD_RagB);(SusD-like_3)
1
43
49
43
49
1
2942
96
88
100
(Sushi);(Trypsin)
1
20
21
28
31
21
198
100
100
71
(Synaptobrevin);(Syntaxin)
1
29
32
29
33
4
758
91
66
100
(TAF);(TFIID-31kDa)
1
28
28
28
28
65
1655
100
18
100
(TAF4);(TFIID_20kDa)
1
21
21
21
21
71
1834
100
10
100
(TBP);(TFIIA_gamma_C)
1
21
23
21
23
43
435
100
39
100
(TBP);(TFIIB)
1
53
59
54
60
5
347
100
36
98
(TBP);(TFIIB)
2
38
42
54
60
84
263
100
36
70
(TFIIE_beta);(TFIIF_beta)
1
25
29
32
36
65
384
100
31
78
(THF_DHG_CYH);(THF_DHG_CYH_C)
1
22
43
22
43
17
1622
98
98
100
(TNF);(TNFR_c6)
1
26
31
29
38
7
363
87
81
90
(TNF);(TNFR_c6)
2
26
31
29
38
7
251
87
81
90
(TPP_enzyme_C);(TPP_enzyme_M)
1
69
183
70
189
9
681
100
98
99
(TPP_enzyme_C);(TPP_enzyme_N)
1
78
213
78
218
10
875
99
98
100
(TPP_enzyme_C);(TPP_enzyme_N)
2
25
63
78
218
24
959
100
95
32
(TPP_enzyme_M);(TPP_enzyme_N)
1
66
167
70
189
9
300
100
98
94
(TPP_enzyme_M);(TPP_enzyme_N)
2
46
147
70
189
11
307
98
98
66
(TPP_enzyme_M);(TPP_enzyme_N)
3
34
106
70
189
12
317
98
99
49
(TPR_1);(TPR_11)
1
31
41
42
53
4
344
98
90
74
(Terpene_synth);(Terpene_synth_C)
1
28
82
28
82
15
1031
95
95
100
(TetR_C_6);(TetR_N)
1
25
40
26
41
6
408
100
100
96
(Tfb2);(Tfb4)
1
31
34
36
39
20
1080
97
35
86
(ThiF);(UBA_e1_thiolCys)
1
20
23
27
33
6
1844
91
78
74
(Thiolase_C);(Thiolase_N)
1
71
144
71
147
2
2760
99
96
100
(Thiolase_C);(Thiolase_N)
2
66
137
71
147
8
394
99
96
93
(Thrombin_light);(Trypsin)
1
123
468
123
485
31
970
99
97
100
(Topoisom_bac);(Toprim)
1
22
37
22
40
17
1515
100
100
100
(Toxin_R_bind_C);(Toxin_R_bind_N)
1
65
103
71
109
12
1185
100
88
92
(Transket_pyr);(Transketolase_C)
1
43
120
43
125
7
302
98
97
100
(Transket_pyr);(Transketolase_C)
2
39
89
43
125
8
1142
98
97
91
(Tubulin);(Tubulin_C)
1
259
530
271
545
1
596
95
59
96
(UCR_14kD);(UcrQ)
1
49
86
49
87
20
445
100
69
100
(UCR_6-4kD);(UCR_UQCRX_QCR9)
1
22
33
22
35
34
504
100
52
100
(UCR_TM);(UCR_UQCRX_QCR9)
1
45
72
46
82
24
618
100
67
98
(UCR_TM);(UcrQ)
1
46
73
47
83
20
563
100
66
98
(UCR_hinge);(UcrQ)
1
48
79
49
87
20
222
100
66
98
(UQ_con);(zf-RING_2)
1
22
22
22
22
19
524
91
27
100
(Utp12);(Utp13)
1
37
37
37
37
36
1697
57
8
100
(Utp12);(Utp13)
2
31
31
37
37
31
320
81
6
84
(Utp12);(Utp21)
1
36
36
36
36
31
1689
56
6
100
(Utp12);(Utp21)
2
31
31
36
36
34
227
77
6
86
(Utp13);(Utp21)
1
35
35
36
36
34
361
57
6
97
(UvrD_C);(UvrD-helicase)
1
26
35
27
37
11
1951
100
83
96
(V-ATPase_C);(V-ATPase_G)
1
28
29
34
35
31
267
100
7
82
(V-ATPase_G);(vATP-synt_E)
1
51
52
51
52
31
1626
100
4
100
(V-ATPase_G_2);(vATP-synt_E)
1
33
33
34
34
84
1292
100
21
97
(V-ATPase_H_N);(vATP-synt_E)
1
22
22
33
33
17
410
100
0
67
(V-set);(V-set_2)
1
309
354
333
380
14
810
99
87
93
(V-set);(WD40)
1
170
170
351
351
35
285
83
3
48
(V-set);(WD40)
2
167
167
351
351
35
138
84
4
48
(V-set);(WD40)
3
149
149
351
351
59
108
62
3
42
(V_ATPase_I);(V-ATPase_C)
1
37
37
38
38
36
352
100
0
97
(V_ATPase_I);(V-ATPase_H_C)
1
26
26
29
29
34
455
100
0
90
(V_ATPase_I);(V-ATPase_H_N)
1
23
23
32
32
17
383
100
0
72
(cNMP_binding);(HTH_Crp_2)
1
49
99
65
119
8
368
99
97
75
(dsrm);(MRP-S32)
1
59
64
59
64
68
660
100
16
100
(dsrm);(Ribosomal_L13)
1
61
66
68
73
25
158
100
14
90
(eIF-1a);(Ribosom_S12_S23)
1
47
47
54
54
20
339
100
15
87
(eIF-1a);(Ribosomal_S30)
1
30
30
34
34
19
301
100
10
88
(eIF-6);(NOGCT)
1
31
31
31
31
35
745
100
48
100
(eIF-6);(Ribosomal_L14)
1
53
53
57
57
66
743
100
47
93
(eIF-6);(Ribosomal_L24e)
1
43
43
53
53
29
179
100
53
81
(eIF-6);(Ribosomal_L3)
1
50
50
56
56
57
213
100
50
89
(fn3);(IL6Ra-bind)
1
21
21
27
28
10
377
81
67
78
(ketoacyl-synt);(Ketoacyl-synt_C)
1
113
184
117
194
11
2003
99
86
97
(ketoacyl-synt);(Ketoacyl-synt_C)
2
99
174
117
194
4
527
97
87
85
(malic);(Malic_M)
1
21
43
21
43
13
1160
100
100
100
(ribosomal_L24);(Tim44)
1
56
61
56
61
86
359
100
15
100
(tRNA_anti-codon);(tRNA-synt_2)
1
55
103
55
103
11
319
88
94
100
(tRNA_anti-codon);(tRNA-synt_2)
2
50
97
55
103
11
200
93
93
91
(ubiquitin);(UCH)
1
55
63
58
68
12
1068
98
68
95
(ubiquitin);(UQ_con)
1
52
61
83
98
23
611
98
52
63
(zf-C2H2);(zf-H2C2_2)
1
62
104
64
111
14
635
95
75
97
(RNA_pol_Rpb2_3);(RNA_pol_Rpb2_45)
1
97
113
100
131
44
350
97
22
97
(NusG);(RNA_pol_Rpb2_2)
1
46
46
48
48
18
250
100
4
96
(NusG);(RNA_pol_Rpb2_1)
1
31
31
48
48
18
198
100
6
65
(NusG);(RNA_pol_Rpb1_1)
1
47
47
49
49
18
577
100
4
96
(ATP-synt_A);(ATP-synt_B)
1
57
58
57
58
13
821
100
5
100
(ATP-synt_A);(ATP-synt_B)
2
54
55
57
58
16
1186
100
5
95
(ATP-synt_B);(OSCP)
1
28
29
42
43
16
161
100
7
67
(ATP-synt_B);(OSCP)
2
27
27
42
43
13
270
100
4
64
(PSP);(RRM_1)
1
27
27
27
27
35
699
59
19
100
(NADHdh_A3);(Oxidored_q4)
1
100
100
102
102
12
338
100
15
98
(MWFE);(NADHdh)
1
106
106
106
106
20
1499
100
14
100
(MWFE);(Oxidored_q3)
1
95
95
105
105
14
231
100
13
90
(CHCH);(MWFE)
1
105
105
106
106
20
311
99
12
99
(GRIM-19);(MWFE)
1
102
102
102
102
20
276
100
15
100
(NDUFA12);(Oxidored_q6)
1
98
98
101
101
30
159
100
15
97
(NADHdh);(NADHdh_A3)
1
102
102
102
102
12
387
100
15
100
(GRIM-19);(NADHdh_A3)
1
92
92
98
98
15
567
100
16
94
(Complex1_30kDa);(ETC_C1_NDUFA5)
1
102
102
103
103
25
213
99
15
99
(Complex1_30kDa);(Complex1_LYR)
1
101
101
102
102
16
452
100
16
99
(NADH_dh_m_C1);(NDUF_C2)
1
86
86
86
86
53
865
100
14
100
(Complex1_49kDa);(zf-CHCC)
1
104
104
105
105
43
208
100
14
99
(Complex1_49kDa);(GRIM-19)
1
100
100
100
100
36
934
100
13
100
(NDUF_C2);(Ndufs5)
1
78
78
84
84
70
135
100
12
93
(NDUF_C2);(Proton_antipo_M)
1
100
100
101
101
9
172
100
15
99
(NDUF_C2);(Proton_antipo_M)
2
76
76
101
101
70
206
100
11
75
(NADH_dehy_S2_C);(NDUF_C2)
1
88
88
88
88
44
796
98
12
100
(NDUF_C2);(NDUFB10)
1
67
67
83
83
70
736
100
12
81
(2Fe-2S_thioredx);(Fer4_10)
1
26
26
26
26
62
470
100
27
100
(Ndufs5);(Oxidored_q3)
1
97
97
106
106
14
697
100
14
92
(Ndufs5);(Oxidored_q2)
1
106
106
106
106
18
498
100
14
100
(Ndufs5);(Proton_antipo_M)
1
104
104
105
105
16
711
100
14
99
(GRIM-19);(Ndufs5)
1
105
105
105
105
20
1135
100
14
100
(Fer4_10);(NADH_4Fe-4S)
1
26
26
26
26
68
296
96
23
100
(NADH_oxidored);(Oxidored_q5_N)
1
87
87
87
87
54
730
100
14
100
(NADH_oxidored);(NDUFB10)
1
64
64
87
87
71
309
100
12
74
(NADH-G_4Fe-4S_3);(zf-CHCC)
1
103
103
105
105
33
190
100
15
98
(ESSS);(NDUF_B5)
1
87
87
87
87
42
895
100
14
100
(ESSS);(Oxidored_q5_N)
1
91
91
91
91
1
938
100
13
100
(dNK);(ESSS)
1
54
54
73
73
79
151
100
13
74
(ESSS);(NDUFB10)
1
72
72
89
89
50
1053
100
17
81
(CHCH);(NADHdh)
1
86
86
102
102
76
214
100
14
84
(GRIM-19);(NADHdh)
1
106
106
106
106
34
571
100
14
100
(NDUF_B5);(NDUF_B6)
1
82
82
87
87
36
249
100
11
94
(NDUF_B5);(Proton_antipo_M)
1
88
88
88
88
16
538
100
14
100
(NDUF_B5);(Proton_antipo_M)
2
79
79
88
88
51
301
100
11
90
(Fer4_7);(NDUFA12)
1
90
90
101
101
35
168
89
17
89
(Fer4_7);(zf-CHCC)
1
102
102
105
105
40
226
100
15
97
(NDUF_B6);(PP-binding)
1
86
86
87
87
46
354
100
13
99
(GRIM-19);(Oxidored_q3)
1
102
102
105
105
14
457
100
15
97
(NADH5_C);(NDUF_B4)
1
99
99
100
100
13
598
93
12
99
(NDUF_B4);(Proton_antipo_M)
1
100
100
100
100
13
1003
100
15
100
(NDUF_B4);(Proton_antipo_M)
2
83
83
100
100
74
240
100
14
83
(Complex1_LYR);(NADH5_C)
1
101
101
104
104
15
461
100
15
97
(Complex1_LYR);(Proton_antipo_M)
1
62
62
101
101
15
125
84
15
61
(NADH5_C);(NDUF_B7)
1
98
98
103
103
16
624
70
11
95
(NDUFB10);(Proton_antipo_M)
1
83
83
99
99
7
483
100
18
84
(NDUFB10);(Proton_antipo_M)
2
83
83
99
99
74
428
100
14
84
(NDUFB10);(Proton_antipo_N)
1
69
69
99
99
53
273
100
17
70
(NADH5_C);(PP-binding)
1
92
92
103
103
18
127
70
8
89
(NADH5_C);(Tim17)
1
78
78
91
91
46
440
100
14
86
(NADH_dehy_S2_C);(Proton_antipo_M)
1
85
85
88
88
44
447
100
14
97
(Oxidored_q5_N);(Proton_antipo_M)
1
44
44
125
125
5
249
98
9
35
(NDUFB10);(Oxidored_q5_N)
1
68
68
99
99
54
161
100
18
69
(Complex1_LYR);(NDUF_B4)
1
62
62
84
84
74
462
100
15
74
(NDUF_B4);(NDUFB10)
1
68
68
95
95
73
369
100
18
72
(dNK);(NADH_dehy_S2_C)
1
87
87
88
88
44
409
100
13
99
(Complex1_LYR);(PP-binding)
1
142
150
145
153
9
605
100
19
98
(dNK);(ETC_C1_NDUFA5)
1
24
24
69
69
79
268
100
12
35
(CHCH);(GRIM-19)
1
102
102
105
105
21
204
89
15
97
(CHCH);(GRIM-19)
2
50
50
105
105
21
557
100
16
48
(CPSF_A);(DUF382)
1
23
23
27
27
24
406
83
9
85
(MMS1_N);(PHF5)
1
31
35
35
39
27
432
86
26
89
(MMS1_N);(SF3b10)
1
37
41
37
41
24
1195
88
29
100
(CPSF_A);(SF3b10)
1
29
33
34
38
24
401
85
33
85
(ATP_synt_H);(V_ATPase_I)
1
45
45
45
45
22
1567
100
0
100
(CLZ);(cNMP_binding)
1
21
21
21
21
77
390
100
5
100
(ATP-synt_ab_C);(ATP-synt_B)
1
20
20
32
32
12
181
100
5
62
(Complex1_51K);(NDUFV3)
1
82
82
82
82
64
910
100
12
100
(Complex1_51K);(ETC_C1_NDUFA4)
1
102
102
102
102
35
365
100
12
100
(CI-B14_5a);(NADH_4Fe-4S)
1
80
80
83
83
81
215
100
12
96
(2Fe-2S_thioredx);(NDUFV3)
1
82
82
82
82
63
587
100
12
100
(2Fe-2S_thioredx);(ETC_C1_NDUFA4)
1
30
30
98
98
35
213
100
17
31
(Complex1_LYR);(NDUF_B12)
1
77
77
82
82
15
241
100
14
94
(NADH_B2);(NDUF_B12)
1
95
95
96
96
6
711
100
12
99
(NADH5_C);(NDUF_B12)
1
97
97
99
99
18
484
97
9
98
(NDUF_B12);(Proton_antipo_M)
1
95
95
96
96
21
309
100
12
99
(NDUF_B12);(PP-binding)
1
94
94
98
98
38
372
100
12
96
(ETC_C1_NDUFA4);(Molybdopterin)
1
102
102
102
102
30
419
100
12
100
(ETC_C1_NDUFA4);(Molybdop_Fe4S4)
1
77
77
77
77
28
655
100
12
100
(ETC_C1_NDUFA4);(NADH-G_4Fe-4S_3)
1
99
99
101
101
35
185
87
10
98
(ETC_C1_NDUFA4);(Fer2_4)
1
83
83
100
100
35
524
100
14
83
(L51_S25_CI-B8);(Molybdopterin)
1
103
103
103
103
30
530
97
13
100
(L51_S25_CI-B8);(NADH_dhqG_C)
1
98
98
102
102
30
385
97
13
96
(CI-B14_5a);(NADH-G_4Fe-4S_3)
1
80
80
83
83
61
362
100
12
96
(Molybdopterin);(NDUFA12)
1
96
96
97
97
3
506
100
12
99
(Molybdop_Fe4S4);(NDUFA12)
1
44
44
73
73
35
140
100
14
60
(NDUF_B4);(NDUF_C2)
1
67
67
78
78
70
147
100
7
86
(NDUF_B5);(NDUF_C2)
1
81
81
81
81
70
505
100
11
100
(CI-B14_5a);(Complex1_49kDa)
1
83
83
83
83
81
1214
100
12
100
(NDUF_B4);(NDUF_B8)
1
91
91
91
91
13
1724
100
12
100
(Complex1_30kDa);(ETC_C1_NDUFA4)
1
102
102
102
102
35
440
100
12
100
(CI-B14_5a);(Complex1_30kDa)
1
83
83
83
83
81
299
100
12
100
(GRIM-19);(NDUF_B5)
1
39
39
83
83
79
114
100
15
47
(CI-B14_5a);(GRIM-19)
1
82
82
83
83
45
338
100
12
99
(NAD_binding_10);(Oxidored_q6)
1
25
25
25
25
32
287
96
24
100
(NDUF_B6);(NDUF_B7)
1
83
83
83
83
57
731
100
10
100
(NDUF_B6);(NDUFB10)
1
83
83
83
83
57
575
100
10
100
(ETC_C1_NDUFA4);(Fer4_7)
1
97
97
99
99
35
155
100
12
98
(NADH_B2);(NDUF_B7)
1
95
95
95
95
6
324
100
12
100
(NDUF_B7);(NDUF_B8)
1
83
83
91
91
22
850
100
12
91
(NDUF_B7);(NDUFB10)
1
69
69
94
94
7
237
100
16
73
(NADH_B2);(NADH5_C)
1
95
95
96
96
6
979
100
12
99
(NADH_B2);(Proton_antipo_M)
1
96
96
96
96
6
641
100
11
100
(NADH_B2);(PP-binding)
1
73
73
81
81
63
140
100
11
90
(NDUF_B8);(Proton_antipo_M)
1
91
91
91
91
20
764
100
12
100
(NDUF_B8);(Proton_antipo_M)
2
81
81
91
91
22
288
100
14
89
(NADH5_C);(NDUF_B8)
1
90
90
91
91
18
901
69
7
99
(NDUF_B8);(PP-binding)
1
36
36
91
91
22
112
100
8
40
(NDUF_B5);(Oxidored_q5_N)
1
84
84
85
85
54
449
100
11
99
(dNK);(NADH_dh_m_C1)
1
61
61
69
69
71
179
100
15
88
(NADH_oxidored);(NDUF_B5)
1
84
84
84
84
71
641
100
11
100
(NDUF_B5);(NDUFB10)
1
69
69
85
85
76
1092
100
13
81
(ETC_C1_NDUFA4);(NDUFA12)
1
87
87
96
96
30
151
100
11
91
(NDUF_B5);(Ndufs5)
1
85
85
85
85
71
978
100
11
100
(CI-B14_5a);(ETC_C1_NDUFA5)
1
81
81
83
83
78
261
100
12
98
(CI-B14_5a);(NDUFA12)
1
82
82
83
83
80
383
100
12
99
(Methyltransf_25);(PRMT5_C)
1
33
119
33
127
2
713
96
92
100
(Spermine_synt_N);(Spermine_synth)
1
29
64
29
64
12
1028
100
100
100
(Binary_toxB_2);(Binary_toxB_3)
1
38
52
39
53
28
346
90
54
97
(Binary_toxB);(Binary_toxB_3)
1
38
52
39
53
27
627
90
54
97
(Binary_toxB);(Binary_toxB_3)
2
21
21
39
53
32
394
81
33
54
(Binary_toxB);(Binary_toxB_2)
1
38
52
38
52
30
386
90
54
100
(Binary_toxB);(Binary_toxB_2)
2
20
20
38
52
40
131
80
35
53
(Phage_sheath_1);(Phage_sheath_1C)
1
20
20
26
26
4
901
65
20
77
(Arena_RNA_pol);(ArenaCapSnatch)
1
22
26
23
27
20
1286
85
19
96
(Nrap_D4);(RRP7)
1
31
31
31
31
20
514
100
0
100
(TAF);(WD40)
1
26
26
31
31
31
161
100
15
84
(7tm_2);(G-alpha)
1
104
104
105
105
16
372
81
0
99
(7tm_2);(Hormone_2)
1
39
39
39
39
11
1079
85
3
100
(Utp21);(WD40)
1
24
24
32
32
34
198
100
4
75
(Utp13);(WD40)
1
29
29
34
34
37
145
100
3
85
(Fcf1);(Fibrillarin)
1
32
32
33
33
63
395
100
3
97
(MMR_HSR1);(Ribosom_S12_S23)
1
30
30
34
34
50
183
100
3
88
(RTC_insert);(WD40)
1
29
29
33
33
38
244
100
3
88
(Brix);(WD40)
1
27
27
34
34
48
135
100
4
79
(Ribosomal_S7);(WD40)
1
27
27
32
32
37
200
100
4
84
(Mpp10);(S4)
1
24
24
29
29
38
205
100
4
83
(RIBIOP_C);(Ribosom_S12_S23)
1
51
51
53
53
17
578
100
12
96
(RIBIOP_C);(RTC)
1
33
33
35
35
35
635
100
3
94
(Mpp10);(Ribosomal_S4)
1
31
31
33
33
34
723
100
6
94
(Ribosomal_S28e);(Utp12)
1
34
34
34
34
36
433
100
3
100
(Mpp10);(WD40)
1
32
32
33
33
20
278
100
3
97
(Mpp10);(WD40)
2
24
24
33
33
76
139
100
4
73
(Mpp10);(WD40)
3
20
20
33
33
25
433
100
5
61
(NDUF_B8);(NDUFB10)
1
66
66
84
84
7
140
100
15
79
(MWFE);(Ndufs5)
1
40
40
41
41
71
153
100
15
98
(NusA_N);(RNA_pol_Rpb2_6)
1
21
21
29
29
51
674
100
19
72
(Cas_Csy1);(Cas_Csy3)
1
33
33
34
34
7
222
73
3
97
(Cas_Csy2);(Cas_Csy3)
1
34
34
34
34
8
1777
74
3
100
(AAA);(AAA_16)
1
23
23
23
23
18
475
65
4
100
(ABC_tran);(FtsX)
1
20
25
20
25
32
647
100
52
100
(C1_4);(Tfb4)
1
34
37
34
37
26
780
97
41
100
(Brix);(Mpp10)
1
34
34
35
35
36
1120
100
6
97
(Complex1_LYR);(RsfS)
1
25
28
25
28
72
605
100
21
100
(Ribosomal_L14);(RsfS)
1
32
35
32
35
23
855
100
29
100
(Ribosomal_L19);(RsfS)
1
26
29
28
31
23
237
100
28
93
(BSD);(Ssl1)
1
25
25
28
31
16
289
96
28
89
(TFIIE_alpha);(zf-C3HC4_5)
1
20
21
20
21
71
255
100
43
100
(HBB);(MAT1)
1
27
30
27
30
27
794
97
33
100
(BING4CT);(Ribosomal_S4)
1
28
28
30
30
46
315
100
4
93
(Fcf2);(Sas10)
1
29
29
31
31
36
289
100
3
94
(Fcf1);(Sas10)
1
25
25
31
31
63
170
100
4
81
(Fibrillarin);(Sas10)
1
31
31
31
31
63
1105
100
3
100
(S4);(Sas10)
1
30
30
31
31
56
147
100
3
97
(Ribosomal_S4);(Sas10)
1
27
27
27
27
56
292
100
4
100
(Ribosom_S12_S23);(Sas10)
1
30
30
34
34
63
177
100
3
88
(RIBIOP_C);(Sas10)
1
30
30
33
33
63
313
100
3
91
(Mpp10);(Utp13)
1
32
32
32
32
36
698
100
3
100
(Mpp10);(RIBIOP_C)
1
34
34
34
34
36
1237
68
3
100
(Fibrillarin);(WD40)
1
31
31
31
31
21
269
100
3
100
(Fcf1);(WD40)
1
25
25
27
27
54
310
100
4
93
(Fcf1);(WD40)
2
22
22
27
27
43
274
100
5
81
(Ribosomal_S7e);(WD40)
1
23
23
25
25
43
189
100
4
92
(NOP5NT);(WD40)
1
25
25
26
26
36
168
100
4
96
(NOP5NT);(Sof1)
1
31
31
31
31
39
305
100
3
100
(Ribosomal_S8);(WD40)
1
23
23
23
23
7
136
100
4
100
(Fibrillarin);(Utp11)
1
29
29
29
29
27
1068
100
3
100
(Nop);(Utp11)
1
26
26
28
28
27
278
100
4
93
(Ribosomal_L7Ae);(Utp11)
1
28
28
29
29
27
528
100
4
97
(RIBIOP_C);(Utp11)
1
31
31
31
31
27
586
100
3
100
(Fcf2);(Fibrillarin)
1
31
31
31
31
36
1063
100
3
100
(Herpes_V23);(Herpes_VP19C)
1
30
30
30
30
9
970
93
0
100
(Herpes_MCP);(Herpes_V23)
1
27
27
27
27
14
733
93
0
100
(Herpes_MCP);(Herpes_V23)
2
26
26
27
27
14
613
92
0
96
(Herpes_MCP);(Herpes_V23)
3
24
24
27
27
14
533
92
0
89
(Herpes_MCP);(Herpes_VP19C)
1
29
29
30
30
9
469
93
0
97
(Herpes_MCP);(Herpes_VP19C)
2
25
25
30
30
9
829
92
0
83
(Herpes_MCP);(Herpes_VP19C)
3
20
20
30
30
9
425
90
0
67
(U3_snoRNA_assoc);(Utp11)
1
25
25
25
25
17
615
100
4
100
(U3_snoRNA_assoc);(WD40)
1
24
24
26
26
17
454
100
4
92
(U3_snoRNA_assoc);(WD40)
2
22
22
26
26
10
170
100
5
85
(U3_snoRNA_assoc);(WD40)
3
22
22
26
26
17
314
100
5
85
(CBF);(WD40)
1
25
25
28
28
40
213
100
4
89
(UTP15_C);(WD40)
1
23
23
30
30
27
190
48
4
77
(Fibrillarin);(U3_snoRNA_assoc)
1
22
22
22
22
17
176
100
5
100
(Utp12);(UTP15_C)
1
30
30
30
30
27
1429
100
3
100
(Utp12);(UTP15_C)
2
30
30
30
30
17
348
100
3
100
(LAMTOR5);(Robl_LC7)
1
20
20
20
20
80
959
80
60
100
(ATP-synt_J);(Fun_ATP-synt_8)
1
38
38
38
38
40
297
100
0
100
(ATP-synt_A);(Mt_ATP-synt_D)
1
63
63
63
63
21
308
100
10
100
(ATP-synt_A);(ATP-synt_J)
1
22
22
38
38
85
302
100
0
58
(IRK);(MTABC_N)
1
32
32
32
32
6
1071
100
0
100
(NusA_N);(RNA_pol_A_CTD)
1
23
23
23
23
87
412
100
26
100
(Asparaginase);(Asparaginase_C)
1
45
122
45
122
11
736
98
100
100
(Asparaginase);(Asparaginase_C)
2
45
122
45
122
11
667
100
100
100
(Asparaginase);(Asparaginase_C)
3
26
92
45
122
31
170
90
93
58
(AAA);(AAA_lid_3)
1
247
276
251
280
8
149
100
41
98
(AAA);(AAA_lid_3)
2
21
21
251
280
25
152
100
0
8
(AAA);(AAA_lid_9)
1
61
62
71
72
30
310
92
23
86
(AAA);(AAA_lid_9)
2
55
56
71
72
30
143
100
41
77
(ATP-synt_ab);(T3SS_ATPase_C)
1
190
229
262
339
7
243
94
53
73
(ATP-synt_ab);(T3SS_ATPase_C)
2
104
166
262
339
8
872
99
56
40
(TetR_C_24);(TetR_N)
1
39
44
39
44
5
505
100
95
100
(A2M);(A2M_BRD)
1
80
90
80
91
8
2041
98
86
100
(A2M_recep);(TED_complement)
1
24
28
38
43
17
875
100
82
63
(MG1);(TED_complement)
1
30
32
47
50
17
358
78
75
64
(ATP-synt_ab_C);(T3SS_ATPase_C)
1
139
171
193
225
36
216
96
60
72
(ATP-synt_ab_C);(T3SS_ATPase_C)
2
37
39
193
225
36
183
97
41
19
(IRK);(IRK_C)
1
55
85
55
87
5
599
100
49
100
(IRK);(IRK_C)
2
40
48
55
87
20
320
98
21
73
(MitMem_reg);(Rpn9_C)
1
33
33
37
37
33
1053
100
36
89
(MitMem_reg);(RPN6_C_helix)
1
58
58
76
76
12
411
100
10
76
(MitMem_reg);(RPN6_C_helix)
2
44
44
76
76
46
498
100
23
58
(GP120);(V-set_2)
1
41
51
88
113
9
926
100
43
47
(ATP-synt);(T3SS_ATPase_C)
1
149
179
192
222
18
345
100
57
78
(ATP-synt);(T3SS_ATPase_C)
2
119
140
192
222
18
188
100
66
62
(AAA_lid_3);(CDC48_N)
1
24
27
60
68
21
159
100
48
40
(AAA_lid_3);(CDC48_2)
1
34
36
38
46
29
317
100
42
89
(ETC_C1_NDUFA4);(NDUFV3)
1
53
53
81
81
51
178
100
11
65
(Molybdopterin);(NDUFV3)
1
34
34
41
41
71
141
100
6
83
(Peptidase_M1);(Peptidase_M1_N)
1
53
257
57
264
10
1352
100
93
93
(DPPIV_rep);(Peptidase_S9)
1
22
121
23
124
27
523
100
100
96
(AAA_2);(AAA_lid_9)
1
49
50
58
59
30
222
100
42
84
(SDH_C);(Shikimate_dh_N)
1
40
52
40
56
15
766
92
92
100
(SDH_C);(Shikimate_DH)
1
24
29
28
37
12
178
90
90
86
(AAA_lid_3);(Vps4_C)
1
58
64
63
69
10
1222
100
25
92
(I-EGF_1);(PSI_integrin)
1
26
68
27
71
33
310
100
63
96
(MG2);(TED_complement)
1
27
31
48
55
5
554
94
71
56
(A2M);(MG2)
1
80
89
80
91
8
641
98
85
100
(A2M);(MG3)
1
63
69
74
83
23
424
97
87
85
(A2M_BRD);(MG2)
1
65
73
66
74
8
434
100
86
98
(MG1);(MG2)
1
45
51
60
66
15
202
100
92
75
(MG2);(MG3)
1
61
67
65
73
20
298
100
87
94
(A2M_BRD);(MG4)
1
58
64
66
74
22
415
100
86
88
(A2M_BRD);(MG1)
1
60
66
62
68
6
644
100
86
97
(MG3);(MG4)
1
56
62
63
69
22
199
100
87
89
(A2M_recep);(MG3)
1
37
42
56
63
30
419
95
88
66
(A2M_BRD);(MG3)
1
40
43
42
46
24
253
100
88
95
(AAA_16);(AAA_lid_10)
1
21
21
22
22
18
306
48
5
95
(ATP-synt_D);(T3SS_ATPase_C)
1
42
47
45
52
11
255
100
26
93
(ATP-synt_D);(T3SS_ATPase_C)
2
30
30
45
52
27
174
100
20
67
(Tfb2_C);(Tfb5)
1
43
46
43
46
26
964
98
37
100
(MCM);(MCM_lid)
1
45
45
45
45
25
1644
100
40
100
(MCM);(MCM_lid)
2
44
44
45
45
24
698
95
34
98
(MitMem_reg);(RPN5_C)
1
75
75
76
76
40
882
89
19
99
(AAA_6);(AAA_lid_11)
1
21
23
21
24
20
651
91
48
100
(AAA_7);(Dynein_AAA_lid)
1
20
22
20
23
2
1094
86
41
100
(GTP_EFTU);(RL10P_insert)
1
26
26
29
29
17
456
100
4
90
(MRPL52);(Ribosomal_L20)
1
58
63
59
64
19
252
100
14
98
(MRPL52);(Ribosomal_L21p)
1
60
65
60
65
22
630
100
14
100
(MRP-63);(MRPL52)
1
58
63
59
64
69
383
100
14
98
(MRPL52);(Ribosomal_L30)
1
59
64
60
65
18
398
100
14
98
(AAA_lid_3);(RPN7)
1
21
21
64
64
39
153
67
14
33
(APG6_N);(Rpn3_C)
1
28
28
40
40
2
277
100
11
70
(JAB);(RPN5_C)
1
61
61
72
72
40
182
92
20
85
(Proteasome);(RPN6_N)
1
29
29
42
42
24
269
100
17
69
(AAA_lid_3);(Proteasome)
1
63
63
71
71
19
221
94
21
89
(AAA_lid_3);(Proteasome)
2
37
37
71
71
61
252
100
11
52
(APG6_N);(Prot_ATP_ID_OB)
1
44
44
53
53
2
391
95
18
83
(APG6_N);(HEAT_2)
1
32
32
46
46
1
286
100
9
70
(APG6_N);(RPN1_RPN2_N)
1
38
38
46
46
1
446
100
11
83
(DASH_Hsk3);(Prot_ATP_ID_OB)
1
26
26
26
26
2
443
96
27
100
(Lactonase);(WD40)
1
20
20
22
22
5
1335
95
50
91
(Cas9_PI);(RuvC_III)
1
33
73
33
74
56
611
100
67
100
(HNH_4);(RuvC_III)
1
37
76
40
84
15
396
100
75
92
(Nrap_D4);(RRM_Rrp7)
1
27
27
30
30
18
563
100
0
90
(Nrap_D6);(RRM_Rrp7)
1
30
30
31
31
18
1538
100
0
97
(Csm4_C);(RAMPs)
1
21
21
32
37
80
229
100
5
66
(Csm1_B);(HD)
1
24
28
24
30
66
136
100
32
100
(MRPL52);(PBP)
1
22
22
31
31
63
246
100
14
71
(ORC_WH_C);(ORC2)
1
29
29
29
29
15
1480
86
7
100
(ORC_WH_C);(ORC5_C)
1
25
25
27
27
15
292
24
4
93
(fn3);(Insulin_TMD)
1
22
22
22
22
31
540
100
23
100
(eIF3m_C_helix);(MitMem_reg)
1
42
42
42
42
3
977
95
7
100
(GCP_C_terminal);(Tubulin)
1
25
25
25
25
16
387
100
4
100
(GCP_C_terminal);(Tubulin_C)
1
25
25
25
25
16
924
100
4
100
(GCP_C_terminal);(Tubulin_C)
2
20
20
25
25
78
259
100
0
80
(TFA2_Winged_2);(TFIIE_alpha)
1
37
41
39
43
19
446
100
29
95
(CHCH);(NADHdh_A3)
1
48
48
54
54
16
373
100
12
89
(KH_8);(Ribosomal_S3Ae)
1
39
39
52
52
17
230
100
15
75
(KH_8);(Ribosomal_S11)
1
56
56
63
63
17
362
100
11
89
(ABC_membrane);(MTABC_N)
1
31
31
44
44
6
392
100
0
70
(TFIID-31kDa);(WD40)
1
26
26
27
27
31
463
100
15
96
(TFIID-31kDa);(WD40)
2
25
25
27
27
31
528
100
12
93
(CHCH);(NDUF_B5)
1
45
45
47
47
43
206
100
11
96
(Csm1_B);(Csm4_C)
1
21
26
32
37
19
124
100
27
66
(Csm2_III-A);(RAMPs)
1
26
26
26
26
15
356
100
4
100
(Fer4_21);(PsaA_PsaB)
1
34
40
34
40
72
271
100
20
100
(Fer4_21);(PsaD)
1
34
40
34
40
52
1155
100
20
100
(Fer4_21);(PSI_PsaE)
1
34
40
34
40
53
486
100
18
100
(Fer2_4);(Molybdop_Fe4S4)
1
21
21
25
25
62
113
100
14
84
(CDC50);(PhoLip_ATPase_C)
1
43
47
43
47
21
2183
100
19
100
(NmrA);(Oxidored_q6)
1
41
41
44
44
71
282
100
12
93
(ATP-synt_C);(ATP-synt_S1)
1
36
36
36
36
22
329
100
0
100
(ATP-synt_S1);(vATP-synt_AC39)
1
36
36
36
36
24
276
100
0
100
(FBPase);(FBPase_C)
1
28
139
28
149
20
1365
97
97
100
(FBPase);(FBPase_C)
2
27
132
28
149
20
214
89
97
96
(Gag_p24);(Gag_p24_C)
1
30
82
118
193
1
413
99
85
25
(Gag_p24);(Gag_p24_C)
2
29
42
118
193
2
275
100
67
25
(Gag_p24);(Gag_p24_C)
3
24
78
118
193
1
392
100
79
20
(EFG_C);(EFG_III)
1
26
47
31
52
15
241
100
98
84
(EFG_III);(GTP_EFTU)
1
21
37
28
49
13
233
100
86
75
(EphA2_TM);(PK_Tyr_Ser-Thr)
1
28
118
28
122
14
508
100
100
100
(Helicase_C);(SNF2-rel_dom)
1
42
44
42
44
3
985
91
57
100
(CoV_NSP7);(CoV_NSP8)
1
41
45
50
54
39
1330
100
29
82
(bCoV_S1_RBD);(Peptidase_M2)
1
179
196
179
199
46
868
71
17
100
(bCoV_S1_RBD);(V-set)
1
76
102
625
668
41
341
74
20
12
(bCoV_S1_RBD);(V-set)
2
73
99
625
668
65
713
73
21
12
(bCoV_S1_RBD);(V-set)
3
58
58
625
668
20
202
62
12
9
(bCoV_S1_RBD);(V-set)
4
40
40
625
668
88
443
45
10
6
(bCoV_S1_RBD);(C1-set)
1
72
104
162
198
67
562
1
2
44
(bCoV_S1_N);(bCoV_S1_RBD)
1
1034
1075
1097
1138
4
299
63
19
94
(bCoV_S1_N);(bCoV_S1_RBD)
2
542
542
1097
1138
17
312
60
8
49
(bCoV_S1_N);(bCoV_S1_RBD)
3
389
389
1097
1138
65
202
66
7
35
(bCoV_S1_N);(bCoV_S1_RBD)
4
32
32
1097
1138
53
588
91
3
3
(bCoV_S1_N);(bCoV_S1_RBD)
5
21
21
1097
1138
20
557
81
5
2
(HD);(HD_assoc_2)
1
20
63
20
63
8
2098
100
100
100
(PAP_assoc);(TUTase)
1
24
59
24
59
3
1477
98
98
100
(EFG_III);(Ribosom_S12_S23)
1
74
79
80
88
13
260
100
4
92
(Ribosomal_L15e);(RNase_P_pop3)
1
41
41
41
41
82
514
100
2
100
(Ribosomal_L23eN);(RNase_P_pop3)
1
41
41
41
41
49
139
95
2
100
(bCoV_S1_N);(CoV_S2)
1
671
671
698
698
19
173
62
8
96
(bCoV_S1_RBD);(CoV_S2)
1
583
583
593
593
14
284
62
8
98
(bCoV_S1_RBD);(CoV_S2)
2
137
137
593
593
14
121
55
4
23
(CoV_S1_C);(CoV_S2)
1
710
710
713
713
12
461
63
7
100
(bCoV_S1_N);(CoV_S1_C)
1
733
733
755
756
12
502
62
7
97
(bCoV_S1_N);(CoV_S1_C)
2
698
699
755
756
12
725
62
8
92
(bCoV_S1_RBD);(CoV_S1_C)
1
566
566
607
608
12
228
61
8
93
(Prot_ATP_ID_OB);(ZapB)
1
28
28
35
35
2
449
75
29
80
(bCoV_S1_N);(V-set)
1
27
27
167
169
21
554
81
15
16
(G-gamma);(ZapB)
1
118
118
120
120
7
757
72
2
98
(V-set);(ZapB)
1
20
20
49
49
8
141
100
0
41
(ABC_tran);(ABC2_membrane_7)
1
24
24
24
24
86
1093
92
21
100
(RNA_pol_Rpb2_2);(RPC5)
1
30
30
30
30
20
731
100
50
100
(RNA_POL_M_15KD);(RPC5)
1
30
30
30
30
20
529
100
50
100
(RNA_pol_Rpc4);(RPC5)
1
30
30
30
30
20
2578
100
50
100
(DNAPKcs_CC5);(FAT)
1
31
31
37
37
11
253
100
45
84
(DNAPKcs_CC5);(PI3_PI4_kinase)
1
34
34
37
37
11
386
100
47
92
(DNAPKcs_CC5);(NUC194)
1
29
29
29
29
71
761
100
52
100
(CPSF_A);(SF3a60_Prp9_C)
1
20
20
20
20
24
441
80
5
100
(Histone);(SNF2-rel_dom)
1
23
23
30
30
39
183
83
9
77
(DUF3912);(RNA_pol_Rpb1_2)
1
25
25
25
25
38
169
100
16
100
(DUF3912);(RNA_pol_Rpb2_6)
1
25
25
25
25
38
357
100
16
100
(DUF3912);(RNA_pol_A_bac)
1
25
25
25
25
38
328
100
16
100
(MMR_HSR1);(Sas10)
1
28
28
30
30
50
356
100
4
93
(CoV_NSP8);(RdRP_1)
1
43
43
44
44
62
398
100
16
98