Protein Common Interface Database

Clusters with M>=10,SeqId<90 and pair Pfam Architecture

Pfam Architecture	Cluster#	#CFs/Cluster	#Entries/Cluster	#CFs/Group	#Entries/Group	Minimum Seq Identity	Surface Area	In PDBBA(%)	In PISABA(%)	CFs Cluster/Group(%)
(TBP)_(TBP);(TFIIA)	1	15	16	15	16	36	667	100	25	100
(TFIIA);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	15	16	15	16	34	2109	100	31	100
(Ribosomal_L13);(Ribosomal_L20)	1	215	361	218	372	10	524	99	20	99
(Ribosomal_L13);(Ribosomal_L3)	1	93	107	109	183	10	407	32	8	85
(Ribosomal_L14);(Ribosomal_L19)	1	210	357	226	380	0	802	99	18	93
(Ribosomal_L14);(Ribosomal_L3)	1	113	187	120	194	10	416	59	9	94
(Ribosomal_L16);(Ribosomal_L27)	1	44	101	52	121	22	270	97	4	85
(Ribosomal_L17);(Ribosomal_L32p)	1	204	349	217	367	0	354	99	17	94
(Ribosomal_L19);(Ribosomal_L3)	1	204	350	219	373	0	717	98	18	93
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)	1	23	23	59	72	40	225	100	52	39
(Ribosomal_L20);(Ribosomal_L21p)	1	221	371	223	378	10	967	99	18	99
(Ribosomal_L22);(Ribosomal_L32p)	1	209	359	221	376	2	464	99	19	95
(Ribosomal_L23);(Ribosomal_L29)	1	215	421	225	440	0	486	99	15	96
(Ribosomal_L23);(Ribosomal_L29)	2	10	11	225	440	10	540	100	9	4
(Ribosomal_L27A);(Ribosomal_L35p)	1	202	342	220	373	0	786	98	17	92
(Ribosomal_L27A);(Ribosomal_L35p)	2	11	16	220	373	10	546	100	62	5
(Ribosomal_L27A);(Ribosomal_L4)	1	180	299	220	373	2	460	98	21	82
(Ribosomal_L27A);(Ribosomal_L4)	2	22	31	220	373	10	430	100	0	10
(Ribosomal_L27A);(Ribosomal_L4)	3	12	22	220	373	10	355	100	41	5
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	1	102	201	131	240	7	971	99	17	78
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	2	10	11	131	240	10	659	100	18	8
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)	1	101	115	104	118	2	756	37	12	97
(AAA);(Proteasome_A_N)_(Proteasome)	1	15	15	21	21	61	495	100	87	71
(AAA);(Proteasome_A_N)_(Proteasome)	2	13	13	21	21	15	404	100	54	62
(CSN8_PSD8_EIF3K);(JAB)	1	13	13	21	21	31	317	100	77	62
(DSS1_SEM1);(RPN7)_(PCI)	1	22	22	31	31	10	729	100	68	71
(JAB);(JAB)_(MitMem_reg)	1	28	30	36	39	19	2989	100	77	78
(JAB)_(MitMem_reg);(RPN7)_(PCI)	1	22	23	33	34	10	468	100	39	67
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	18	34	18	36	10	2253	100	97	100
(JAB)_(MitMem_reg);(VWA_2)	1	24	24	24	24	48	640	100	54	100
(PCI);(RPN7)_(PCI)	1	15	16	15	16	8	1266	100	50	100
(eIF-6);(Ribosomal_L14)	1	10	10	10	10	60	861	100	60	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	1	62	76	92	106	10	767	25	4	67
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	2	29	29	92	106	5	689	45	28	32
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)	1	93	107	95	109	1	955	33	11	98
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	73	87	75	89	10	459	29	14	97
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	1	28	28	38	38	10	278	100	32	74
(Ribosomal_L13);(Ribosomal_L18A)	1	70	84	94	108	15	681	27	4	74
(Ribosomal_L13);(Ribosomal_L35Ae)	1	57	59	77	91	10	241	29	5	74
(Ribosomal_L14);(Ribosomal_L24e)	1	114	188	119	194	0	513	60	9	96
(Ribosomal_L15e);(Ribosomal_L29)	1	98	112	98	112	20	355	35	11	100
(Ribosomal_L15e);(Ribosomal_L7Ae)	1	112	186	112	186	3	919	59	7	100
(Ribosomal_L18);(Ribosomal_L27A)	1	97	111	100	114	10	888	35	10	97
(Ribosomal_L18A);(Ribosomal_L21e)	1	94	108	94	108	1	897	33	10	100
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)	1	92	106	95	109	10	303	33	11	97
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)	1	106	180	108	182	10	1219	59	6	98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)	1	91	105	91	105	10	300	32	10	100
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	96	110	100	114	10	848	32	8	96
(Ribosomal_L24e);(Ribosomal_L3)	1	98	112	104	118	0	599	33	12	94
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)	1	19	33	21	35	8	343	0	0	90
(Ribosomal_L29);(Ribosomal_L37e)	1	23	23	23	23	38	206	39	4	100
(Ribosomal_L34e);(Ribosomal_L7Ae)	1	95	109	99	113	10	263	33	10	96
(Ribosomal_L37e);(Ribosomal_L39)	1	75	89	78	92	39	230	28	11	96
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)	1	91	105	95	109	10	244	30	10	96
(DNA_RNApol_7kD);(RNA_pol_A_bac)	1	70	176	70	207	20	575	100	63	100
(DNA_RNApol_7kD);(RNA_pol_N)	1	10	14	30	102	40	189	100	71	33
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	55	162	55	193	16	1008	100	62	100
(RNA_pol_A_bac);(RNA_pol_L_2)	1	70	176	70	207	4	2036	100	73	100
(RNA_pol_A_bac);(RNA_pol_N)	1	70	176	70	207	20	1110	100	83	100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	27	110	31	164	49	359	100	73	87
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	52	154	52	185	22	1703	100	84	100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	41	143	41	174	35	963	100	57	100
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	48	153	55	193	23	446	100	73	87
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	42	144	42	175	44	1550	100	81	100
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	41	143	52	185	44	1379	100	68	79
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	55	162	55	193	37	1535	100	84	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	39	141	41	174	53	9130	100	72	95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)	1	42	144	42	175	42	2104	100	81	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	41	143	42	175	53	1904	100	80	98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	41	143	42	175	29	1469	100	80	98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	34	84	35	108	10	596	100	58	97
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)	1	17	18	17	18	33	2050	100	17	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	17	18	17	18	33	1720	100	11	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_beta)	1	10	10	13	13	33	1353	100	10	77
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)	1	40	94	42	120	2	2082	100	59	95
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)	1	37	91	38	116	17	449	99	55	97
(TBP)_(TBP);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	14	14	14	14	33	519	100	7	100
(TBP)_(TBP);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	17	18	17	18	40	450	100	28	100
(Ran_BP1);(Ras)	1	14	38	14	38	22	2110	100	97	100
(F_actin_cap_B);(F-actin_cap_A)	1	18	20	18	20	10	3537	100	65	100
(Actin);(Gelsolin)	1	11	31	11	31	10	1206	100	100	100
(ETF);(ETF)_(ETF_alpha)	1	10	16	10	16	10	3105	100	100	100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)	1	13	68	13	71	10	4673	100	100	100
(Me-amine-dh_H);(Me-amine-dh_L)	1	14	69	14	69	12	1511	99	94	100
(Me-amine-dh_H);(Me-amine-dh_L)	2	14	69	14	69	12	1142	94	96	100
(Skp1_POZ);(ubiquitin)	1	17	50	17	51	10	1072	100	96	100
(Kinesin);(Tubulin)_(Tubulin_C)	1	24	24	41	41	28	600	96	29	59
(Kinesin);(Tubulin)_(Tubulin_C)	2	23	23	41	41	28	654	96	30	56
(Thrombin_light);(Trypsin)	1	96	359	98	430	10	1162	100	99	98
(Thrombin_light);(Trypsin)	2	20	33	98	430	74	265	3	15	20
(ubiquitin);(UQ_con)	1	18	18	37	45	27	819	100	67	49
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	1	207	422	312	571	1	406	99	19	66
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	2	96	110	312	571	10	477	33	8	31
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	1	209	437	312	571	0	865	100	20	67
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	2	98	112	312	571	10	411	32	8	31
(OTU);(ubiquitin)	1	12	14	12	14	10	1021	100	93	100
(Ribosom_S12_S23);(Ribosomal_S17)	1	181	388	198	441	10	221	99	25	91
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	1	81	106	142	266	0	273	98	25	57
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	2	33	125	142	266	10	218	100	6	23
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	3	11	11	142	266	12	919	82	55	8
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	1	93	144	179	299	10	305	100	22	52
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	2	25	25	179	299	59	290	4	0	14
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)	1	26	40	26	40	24	270	15	5	100
(Ribosomal_S10);(Ribosomal_S14)	1	218	444	321	580	0	801	98	22	68
(Ribosomal_S10);(Ribosomal_S14)	2	102	116	321	580	0	750	34	9	32
(Ribosomal_S10);(Ribosomal_S9)	1	16	16	34	41	17	288	81	0	47
(Ribosomal_S11);(Ribosomal_S18)	1	89	280	115	338	10	312	100	8	77
(Ribosomal_S11);(Ribosomal_S21)	1	111	135	129	157	0	1038	97	23	86
(Ribosomal_S11);(Ribosomal_S7)	1	166	357	195	428	10	243	99	22	85
(Ribosomal_S13);(Ribosomal_S19)	1	311	548	320	579	0	440	86	13	97
(Ribosomal_S14);(Ribosomal_S19)	1	105	132	123	151	10	306	98	23	85
(Ribosomal_S18);(Ribosomal_S21)	1	65	88	101	128	10	251	95	20	64
(Ribosomal_S18);(Ribosomal_S6)	1	212	435	223	468	0	929	99	14	95
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	1	166	384	264	523	10	324	99	23	63
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	2	58	72	264	523	37	367	29	10	22
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	1	201	419	325	584	1	574	99	20	62
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	2	105	119	325	584	10	544	34	10	32
(Ribosomal_S7);(Ribosomal_S9)	1	260	465	293	528	0	453	84	16	89
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	1	24	53	25	55	10	497	100	91	96
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	2	21	50	25	55	23	514	100	94	84
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)	3	21	51	25	55	31	569	100	90	84
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	1	22	52	25	55	10	580	100	90	88
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	2	20	50	25	55	23	253	100	90	80
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	3	18	34	25	55	31	274	100	91	72
(ATP-synt);(ATP-synt_Eps)	1	24	37	24	37	10	795	100	84	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab)_ (ATP-synt_ab_C)	1	39	70	42	73	18	1982	100	87	93
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	1	11	11	11	11	52	1513	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	2	11	11	11	11	52	1010	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(vATP-synt_E)	1	12	12	13	13	16	642	100	0	92
(MHC_I)_(C1-set);(V-set)_(DUF1968)	1	15	45	19	55	38	585	91	42	79
(Histone);(Histone)_(Histone_H2A_C)	1	42	127	49	187	10	2495	100	93	86
(Histone);(Histone)_(Histone_H2A_C)	2	39	168	49	187	42	673	99	95	80
(Bclx_interact);(BH4)_(Bcl-2)	1	12	14	12	14	10	1009	100	100	100
(Ras);(RhoGEF)_(PH)	1	13	15	14	16	10	1508	100	100	93
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	1	13	52	13	52	20	1776	100	96	100
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	2	10	24	13	52	29	316	100	100	77
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)	1	30	30	36	36	10	370	3	0	83
(Ribosomal_S11);(Ribosomal_S28e)	1	36	36	43	43	46	303	31	6	84
(Ribosomal_S11);(Ribosomal_S3Ae)	1	92	106	102	116	10	867	39	10	90
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)	1	19	19	20	20	35	255	42	11	95
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)	1	26	26	31	31	31	230	42	19	84
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)	1	40	42	41	43	10	210	33	14	98
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)	1	101	115	101	115	10	738	37	10	100
(Ribosomal_S24e);(Ribosomal_S4)_(S4)	1	53	67	54	68	10	234	28	7	98
(Ribosomal_S28e);(Ribosomal_S7)	1	103	117	105	119	10	1143	36	9	98
(Ribosomal_S7e);(Ribosomal_S8)	1	100	114	100	114	10	467	36	10	100
(Cullin)_(Cullin_Nedd8);(zf-rbx1)	1	12	12	12	12	10	2009	100	100	100
(Mago_nashi);(RRM_1)	1	11	11	11	11	63	1272	100	91	100
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)	1	15	23	26	35	52	302	91	35	58
(Inhibitor_I9);(Peptidase_S8)	1	18	27	18	27	10	1268	96	100	100
(MHC_I)_(C1-set);(V-set)_(C1-set)	1	11	15	20	56	40	432	93	20	55
(V-set)_(C1-set);(V-set)_(DUF1968)	1	179	309	184	324	10	2037	100	98	97
(V-set)_(C1-set);(V-set)_(DUF1968)	2	10	16	184	324	18	726	0	0	5
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)	1	28	32	31	41	20	354	97	25	90
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)	1	23	31	31	41	10	343	94	26	74
(C1-set);(MHC_I_3)_(C1-set)	1	18	71	18	75	20	1286	100	100	100
(Synaptobrevin);(Syntaxin)_(SNARE)	1	20	24	20	25	4	1372	100	83	100
(Pico_P1A);(Rhv)	1	43	127	47	135	10	1013	100	65	91
(Pico_P1A);(Rhv)	2	36	120	47	135	10	809	100	62	77
(Pico_P1A);(Rhv)	3	33	104	47	135	28	533	100	60	70
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Nop10p)	1	10	10	10	10	27	1331	100	100	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	26	59	26	59	10	1937	100	90	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	2	24	56	26	59	10	257	100	95	92
(MCM_N)_(MCM_OB)_(MCM);(MCM2_N)_(MCM_N)_(MCM_OB)_(MCM)	1	12	12	12	12	18	2564	100	42	100
(Cyclin_N)_(Cyclin_C);(Pkinase)	1	22	80	23	119	10	1533	99	98	96
(CENP-T_C);(Histone)	1	10	17	14	22	11	520	100	76	71
(CENP-T_C);(Histone)	2	10	17	14	22	89	275	100	76	71
(Ecotin);(Trypsin)	1	12	17	12	17	27	952	100	100	100
(Ecotin);(Trypsin)	2	10	15	12	17	27	512	93	100	83
(Fer4_7);(PsaA_PsaB)	1	13	19	13	19	78	410	100	47	100
(Fer4_7);(PsaA_PsaB)	2	13	19	13	19	0	841	100	47	100
(Fer4_7);(PsaD)	1	13	19	13	19	56	1470	100	47	100
(Fer4_7);(PSI_PsaE)	1	13	19	13	19	10	503	100	42	100
(PsaA_PsaB);(PsaD)	1	13	19	13	19	56	775	100	53	100
(PsaA_PsaB);(PsaD)	2	13	19	13	19	56	714	100	53	100
(PsaA_PsaB);(PsaL)	1	12	18	12	18	39	481	100	50	100
(PsaA_PsaB);(PSI_8)	1	12	18	12	18	35	649	100	50	100
(PsaA_PsaB);(PSI_PsaE)	1	12	18	12	18	43	423	100	44	100
(PsaA_PsaB);(PSI_PsaE)	2	10	13	12	18	43	295	100	38	83
(PsaA_PsaB);(PSI_PsaF)	1	11	17	11	17	42	895	100	47	100
(PsaA_PsaB);(PSI_PsaF)	2	11	17	11	17	42	920	100	47	100
(PsaA_PsaB);(PSI_PsaJ)	1	10	13	10	13	12	369	100	46	100
(PSI_PsaF);(PSI_PsaJ)	1	11	17	11	17	38	685	100	41	100
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)	1	16	41	16	43	16	751	100	66	100
(Cytochrom_B559);(Photo_RC)	1	17	41	17	44	10	466	100	71	100
(Cytochrom_B559);(PsbJ)	1	13	38	13	40	10	373	100	50	100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	1	15	39	16	43	31	1323	100	67	94
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	2	15	40	16	43	10	311	100	68	94
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)	1	13	38	13	40	10	384	100	50	100
(MSP);(Photo_RC)	1	15	39	15	42	10	704	100	49	100
(MSP);(Photo_RC)	2	14	38	15	42	31	673	100	55	93
(MSP);(PSII)	1	15	38	15	42	43	1297	100	55	100
(MSP);(PSII)	2	13	37	15	42	43	767	100	51	87
(MSP);(PSII)	3	12	25	15	42	45	389	60	8	80
(Photo_RC);(PsbH)	1	15	39	15	42	31	271	100	64	100
(Photo_RC);(PsbI)	1	15	40	15	42	10	859	100	45	100
(Photo_RC);(PsbL)	1	15	39	15	42	10	400	100	56	100
(Photo_RC);(PsbL)	2	15	40	15	42	10	252	100	57	100
(Photo_RC);(PsbT)	1	15	40	15	42	42	513	100	57	100
(Photo_RC);(PsbT)	2	12	35	15	42	31	209	100	57	80
(Photo_RC);(PsbX)	1	14	37	14	41	31	588	100	62	100
(Photo_RC);(PSII)	1	16	41	16	43	17	803	100	80	100
(Photo_RC);(PSII)	2	16	40	16	43	31	2751	100	72	100
(Photo_RC);(PSII)	3	16	39	16	43	10	3155	100	69	100
(PsbH);(PsbX)	1	13	36	13	40	31	295	100	56	100
(PsbH);(PSII)	1	15	40	15	42	61	1862	100	70	100
(PsbI);(PSII)	1	15	38	15	42	64	451	100	47	100
(PsbK);(PSII)	1	15	38	15	42	14	815	100	63	100
(PsbK);(Ycf9)	1	15	40	15	42	12	269	100	48	100
(PsbL);(PsbM)	1	14	39	14	41	10	805	100	72	100
(PsbL);(PsbT)	1	15	40	15	42	10	598	100	75	100
(PsbL);(PSII)	1	15	40	15	42	10	592	100	60	100
(PSII);(Ycf9)	1	15	37	15	42	10	434	100	49	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	1	14	32	14	32	31	1737	100	88	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	2	12	27	14	32	31	853	100	96	86
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)	1	21	37	25	49	44	942	100	81	84
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	55	89	67	101	12	1524	100	90	82
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	2	12	12	67	101	13	1868	100	83	18
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	10	39	10	39	65	1855	100	95	100
(JAB)_(MitMem_reg);(TPR_19)_(PCI)	1	11	11	11	11	77	1471	100	73	100
(PPR)_(DUF410)_(PCI);(RPN7)_(PCI)	1	11	11	11	11	84	1376	100	64	100
(CSN8_PSD8_EIF3K);(TPR_19)_(PCI)_(Rpn3_C)	1	10	10	10	10	86	2061	100	80	100
(Fimbrial);(PapD_N)_(PapD_C)	1	12	14	12	14	10	1663	100	100	100
(Serpin);(Trypsin)	1	10	10	14	14	24	1122	100	100	71
(Rhv);(VP4_2)	1	14	24	16	28	23	593	100	67	88
(Rhv);(VP4_2)	2	12	20	16	28	65	233	100	65	75
(eIF-1a);(Ribosom_S12_S23)	1	13	13	22	22	20	462	100	23	59
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(zf- RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(R NA_pol_Rpb1_5)	1	11	24	14	43	74	1162	100	75	79
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (zf-RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4 )_(RNA_pol_Rpb1_5)	1	11	24	14	43	74	8592	100	88	79
(RNA_pol_Rpb6);(zf-RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_ (RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	12	25	14	43	74	2315	100	88	86
(G-alpha);(RGS)	1	10	10	10	10	37	875	100	10	100
(Photo_RC);(PRCH)_(PRC)	1	12	131	12	135	37	1621	100	97	100
(Photo_RC);(PRCH)_(PRC)	2	12	131	12	135	37	2678	100	98	100
(Cytochrom_C550);(Photo_RC)	1	12	37	12	39	54	565	100	81	100
(Cytochrom_C550);(PsbU)	1	11	36	11	38	35	636	100	61	100
(Cytochrom_C550);(PSII)	1	13	36	13	40	54	904	100	81	100
(MSP);(PsbU)	1	11	35	11	38	35	518	100	51	100
(PsbU);(PSII)	1	11	36	11	38	35	446	100	61	100
(PsbU);(PSII)	2	11	34	11	38	35	438	100	56	100
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)	1	67	177	81	208	10	1130	100	9	83
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)	2	11	21	81	208	31	820	100	33	14
(Ribosomal_L31);(Ribosomal_S13)	1	75	169	96	199	10	409	100	18	78
(Ribosomal_L31);(Ribosomal_S19)	1	66	138	94	183	10	435	100	24	70
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7)	1	11	29	11	29	78	7766	100	90	100
(Kazal_1);(Trypsin)	1	10	35	10	35	10	639	100	97	100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	11	11	11	11	33	1130	100	82	100
(HTH_9)_(RNA_pol_Rpc82)_(TFIIE_alpha);(RNA_pol_3_Rpc31)	1	11	11	11	11	66	1483	100	82	100
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	13	13	13	13	30	1694	100	85	100
(RNA_pol_I_A49);(RNA_polI_A34)	1	20	24	20	24	38	2165	100	79	100
(RNA_polI_A14);(SHS2_Rpb7-N)	1	19	23	19	23	84	1625	100	57	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	1	10	31	10	33	16	4541	100	97	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	2	10	31	10	33	51	1305	100	97	100
(DUF5089);(Synaptobrevin)	1	10	15	14	19	10	1094	100	93	71
(DUF5089);(Syntaxin)_(SNARE)	1	13	14	13	14	10	1455	100	100	100
(AAA);(Prot_ATP_ID_OB)_(AAA)	1	12	12	12	12	34	3014	100	33	100
(Prot_ATP_ID_OB)_(AAA);(Proteasome_A_N)_(Proteasome)	1	12	12	15	15	36	417	100	58	80
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)	1	91	105	91	105	8	492	30	7	100
(KH_2)_(Ribosomal_S3_C);(S10_plectin)	1	91	105	91	105	3	885	31	8	100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)	1	39	53	39	53	10	480	19	8	100
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)	1	102	116	102	116	7	465	33	11	100
(Ribosom_S12_S23);(Ribosomal_S30)	1	81	95	82	96	10	479	35	9	99
(Ribosomal_L16);(Ribosomal_L21e)	1	42	55	47	61	10	215	25	13	89
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	71	85	76	90	10	262	26	7	93
(Ribosomal_L24e);(Ribosomal_S6e)	1	40	54	43	57	10	809	15	4	93
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)	1	43	57	43	57	35	665	26	9	100
(Ribosomal_L7Ae);(Ribosomal_S27)	1	34	48	38	52	10	509	25	10	89
(Ribosomal_L7Ae);(S10_plectin)	1	16	16	20	20	31	288	19	0	80
(Ribosomal_S11);(Ribosomal_S26e)	1	94	108	94	108	10	1106	31	8	100
(Ribosomal_S13);(Ribosomal_S19e)	1	95	109	100	114	2	440	33	10	95
(Ribosomal_S13);(Ribosomal_S25)	1	86	100	91	105	10	468	33	9	95
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)	1	101	115	103	117	8	716	35	10	98
(Ribosomal_S14);(S10_plectin)	1	88	102	90	104	10	288	31	7	98
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	1	79	93	86	100	10	1006	27	9	92
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	43	57	43	57	10	538	21	9	100
(Ribosomal_S19e);(Ribosomal_S9)	1	52	52	58	58	3	298	33	12	90
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)	1	88	102	88	102	10	1524	28	9	100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	88	102	88	102	10	544	28	9	100
(Ribosomal_S21e);(Ribosomal_S27e)	1	49	63	49	63	39	437	30	10	100
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)	1	96	110	96	110	10	1325	33	10	100
(Ribosomal_S21e);(Ribosomal_S8)	1	83	97	84	98	10	279	33	10	99
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	1	94	108	99	113	5	541	33	10	95
(Ribosomal_S25);(Ribosomal_S7)	1	88	102	95	109	5	609	33	10	93
(Ribosomal_S26e);(Ribosomal_S3Ae)	1	76	90	82	96	10	271	32	7	93
(Ribosomal_S27e);(Ribosomal_S7e)	1	35	35	37	37	31	365	31	9	95
(Ribosomal_S27e);(Ribosomal_S8)	1	100	114	100	114	10	487	34	10	100
(Ribosomal_S30);(Ribosomal_S4)_(S4)	1	57	71	57	71	5	506	30	10	100
(Ribosomal_S4)_(S4);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_ S4_C)	1	50	64	50	64	10	387	25	11	100
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )	1	91	105	91	105	5	314	31	10	100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)	1	43	57	45	59	36	314	21	7	96
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)	1	42	42	50	50	35	632	43	17	84
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	37	37	41	41	10	494	43	11	90
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)	1	44	44	47	47	10	586	41	5	94
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	45	45	45	45	10	548	44	9	100
(Ribosomal_S24e);(S4)	1	11	11	12	12	10	228	73	18	92
(Ribosomal_S30);(S4)	1	24	24	24	24	10	489	50	12	100
(Ribosomal_S5)_(Ribosomal_S5_C);(S4)	1	40	40	43	43	10	375	40	8	93
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	41	41	41	41	10	289	49	10	100
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)	1	40	40	40	40	10	353	40	8	100
(Ribosom_S12_S23);(ubiquitin)_(Ribosomal_S30)	1	16	16	16	16	55	405	25	0	100
(S4);(ubiquitin)_(Ribosomal_S30)	1	16	16	16	16	55	524	25	0	100
(Peptidase_C48);(Rad60-SLD)	1	10	14	10	14	15	1026	100	86	100
(Peptidase_S8);(potato_inhibit)	1	11	29	11	29	32	835	100	100	100
(Ig_3)_(C1-set);(V-set)_(C1-set)	1	22	29	22	29	19	1692	100	93	100
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	1	20	20	21	21	24	865	100	10	95
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	2	10	10	21	21	24	820	100	10	48
(TFIIF_alpha);(TFIIF_beta)	1	11	11	15	15	16	2113	100	9	73
(Flu_PA);(Flu_PB1)	1	13	15	13	15	10	7638	100	93	100
(FXa_inhibition);(Trypsin)	1	18	152	18	179	35	908	96	99	100
(EF-hand_6)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(IQ)_(IQ)	1	12	12	14	15	40	1540	100	8	86
(GP120);(V-set)_(C1-set)	1	34	61	115	174	10	914	98	61	30
(GP120);(V-set)_(C1-set)	2	19	35	115	174	33	262	100	69	17
(GP120);(V-set)_(C1-set)	3	10	25	115	174	58	242	0	4	9
(GP120);(V-set)_(C1-set)	4	10	25	115	174	50	525	96	24	9
(GP120);(GP41)	1	21	32	21	32	71	2451	97	59	100
(GP120);(ig)_(C2-set)_(CD4-extracel)	1	15	27	15	27	23	1047	100	59	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosom_ S12_S23)	1	18	18	22	24	10	352	50	0	82
(Pico_P1A)_(Rhv);(Rhv)	1	10	15	11	17	15	1687	100	13	91
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)	1	13	13	15	15	19	1710	100	69	87
(Plug_translocon)_(SecY);(SecE)	1	18	20	20	22	17	1610	85	55	90
(Hormone_recep);(SRC-1)	1	10	17	55	228	10	676	100	100	18
(Kunitz_BPTI);(Trypsin)	1	36	90	37	91	16	677	100	99	97
(Gla)_(EGF)_(FXa_inhibition);(Trypsin)	1	12	91	12	93	37	896	96	98	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	1	10	15	10	17	10	504	100	80	100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)	2	10	15	10	17	10	654	100	80	100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	1	113	158	115	161	10	2632	100	99	98
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	2	20	22	115	161	21	379	14	14	17
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	3	10	11	115	161	23	325	0	0	9
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	1	22	64	23	85	10	3624	100	100	96
(CBFD_NFYB_HMF);(Histone)	1	45	164	45	177	14	2446	100	97	100
(CBFD_NFYB_HMF);(Histone)	2	19	90	45	177	10	496	98	96	42
(CBFD_NFYB_HMF);(Histone)	3	19	94	45	177	76	270	98	94	42
(Med17);(Med6)	1	10	10	10	10	10	740	100	20	100
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)	1	11	24	28	42	10	813	100	100	39
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)	1	14	27	19	32	10	649	100	89	74
(PKI);(Pkinase)	1	13	140	16	213	77	982	95	96	81
(PKI);(Pkinase)	2	10	145	16	213	0	388	0	0	62
(Polyketide_cyc2);(PP2C)	1	13	27	14	29	10	867	96	100	93
(CBFD_NFYB_HMF);(Histone)_(Histone_H2A_C)	1	25	140	26	150	12	423	99	96	96
(Ricin_B_lectin)_(Ricin_B_lectin);(RIP)	1	10	39	10	39	28	1546	100	95	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	1	13	47	13	50	26	1769	100	96	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	2	13	47	13	50	26	460	98	89	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	3	13	47	13	50	26	863	98	91	100
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)	1	19	146	20	183	43	2584	100	99	95
(C1-set);(MHC_I)_(Ig_3)	1	273	535	274	560	22	1284	99	97	100
(C1-set);(MHC_I)_(Ig_3)	2	33	84	274	560	83	259	0	0	12
(C1-set);(MHC_I)_(Ig_3)	3	21	38	274	560	72	342	3	11	8
(C1-set);(MHC_I)_(Ig_3)	4	21	38	274	560	72	334	3	0	8
(C1-set);(MHC_I)_(Ig_3)	5	20	63	274	560	19	261	0	2	7
(C1-set);(MHC_I)_(Ig_3)	6	20	28	274	560	41	267	0	11	7
(C1-set);(MHC_I)_(Ig_3)	8	13	64	274	560	84	215	2	0	5
(C1-set);(MHC_I)_(Ig_3)	9	13	20	274	560	86	339	0	0	5
(C1-set);(MHC_I)_(Ig_3)	10	11	37	274	560	83	511	0	5	4
(C1-set);(MHC_I)_(Ig_3)	11	11	37	274	560	69	224	0	0	4
(MHC_I)_(Ig_3);(V-set)_(C1-set)	1	39	61	56	85	53	414	100	49	70
(C1-set);(MHC_I)_(C2-set_2)	1	15	21	15	21	75	1292	100	100	100
(C1-set);(MHC_I)_(C1-set)	1	140	226	145	242	10	1259	100	98	97
(C1-set);(MHC_I)_(C1-set)	2	12	14	145	242	66	273	7	7	8
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	15	17	15	17	34	2424	100	65	100
(Complex1_30kDa);(Complex1_49kDa)	1	15	17	15	17	28	2626	100	65	100
(Complex1_49kDa);(Fer4_7)	1	11	13	11	13	34	1377	100	54	100
(Complex1_49kDa);(Oxidored_q6)	1	16	18	16	18	3	1255	100	61	100
(COX1);(COX2_TM)_(COX2)	1	16	62	16	65	33	3546	100	87	100
(COX1);(COX3)	1	14	51	14	54	19	2535	100	86	100
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)	1	29	67	30	81	10	1601	100	87	97
(Cytochrom_C1);(UCR_14kD)	1	23	56	26	72	34	399	100	91	88
(Cytochrom_C1);(UCR_hinge)	1	27	60	27	73	30	1082	100	85	100
(Cytochrom_C1);(UCR_TM)_(Rieske)	1	15	44	19	65	51	791	100	91	79
(Cytochrom_C1);(UCR_UQCRX_QCR9)	1	24	57	27	73	32	841	100	89	89
(Cytochrom_C1);(UcrQ)	1	27	61	27	73	21	726	100	84	100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)	1	22	55	26	72	26	401	100	91	85
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)	1	27	61	27	73	34	1193	100	84	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	1	15	45	19	65	49	496	100	89	79
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	2	12	34	19	65	49	896	91	88	63
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)	1	27	60	27	73	21	990	100	85	100
(Fer4_7);(Oxidored_q6)	1	12	14	12	14	10	1288	100	50	100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)	1	18	39	26	72	10	399	87	87	69
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)	1	16	40	19	65	71	932	100	80	84
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)	1	14	32	18	46	26	260	100	88	78
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)	1	27	61	27	73	21	825	100	84	100
(UCR_14kD);(UcrQ)	1	23	56	26	72	21	464	100	91	88
(UCR_6-4kD);(UCR_UQCRX_QCR9)	1	10	22	13	34	79	571	100	73	77
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)	1	18	48	19	65	32	644	100	83	95
(UCR_TM)_(Rieske);(UcrQ)	1	13	37	19	65	62	593	100	86	68
(NADHdh);(Oxidored_q3)	1	13	13	13	13	14	1019	100	54	100
(NADHdh);(Oxidored_q4)	1	11	11	13	13	74	2706	100	45	85
(Oxidored_q2);(Oxidored_q3)	1	11	11	15	15	57	2705	100	45	73
(Oxidored_q2);(Oxidored_q4)	1	12	12	14	14	19	404	100	50	86
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	12	12	12	12	32	531	100	50	100
(Oxidored_q3);(Oxidored_q4)	1	11	11	13	13	57	1783	100	45	85
(MWFE);(NADHdh)	1	11	11	11	11	79	1464	100	45	100
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)	1	10	10	10	10	72	777	100	50	100
(NADHdh);(NADHdh_A3)	1	11	11	11	11	43	656	100	45	100
(NADHdh_A3);(Oxidored_q4)	1	10	10	10	10	43	350	100	50	100
(NDUF_B4);(Oxidored_q5_N)_(Proton_antipo_M)	1	10	10	10	10	61	1316	100	50	100
(NDUF_B4);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	10	10	10	10	61	847	100	50	100
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	11	11	11	11	45	995	100	45	100
(Ndufs5);(Oxidored_q2)	1	11	11	11	11	74	459	100	45	100
(Ndufs5);(Oxidored_q3)	1	10	10	10	10	57	713	100	50	100
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	10	10	10	10	63	791	100	50	100
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	11	11	11	11	63	1615	100	45	100
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	11	11	11	11	57	632	100	45	100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)	1	11	11	11	11	63	1189	100	45	100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_N)_(Proton_ antipo_M)_(NADH5_C)	1	12	12	12	12	25	2282	100	50	100
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)	1	10	10	10	10	63	902	100	40	100
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)	1	96	110	98	112	10	661	34	10	98
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	1	95	109	97	111	3	512	33	10	98
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	2	85	99	97	111	10	279	32	10	88
(Ribosomal_L15e);(Ribosomal_L36e)	1	98	112	98	112	10	530	36	11	100
(Ribosomal_L18);(Ribosomal_L28e)	1	42	42	42	42	10	231	33	2	100
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)	1	81	95	91	105	10	261	33	9	89
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)	1	97	111	100	114	1	463	35	11	97
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	95	109	95	109	7	593	34	10	100
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)	1	83	97	88	102	10	223	35	10	94
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)	1	88	102	88	102	7	372	32	10	100
(Ribosomal_L27A);(Ribosomal_L36e)	1	77	91	80	94	10	232	31	9	96
(Ribosomal_L28e);(Ribosomal_L32e)	1	41	41	46	46	10	768	37	0	89
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	28	28	29	29	10	532	29	0	97
(Ribosomal_L32e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	28	28	29	29	83	226	29	0	97
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	23	23	33	33	10	857	30	0	70
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)	2	10	10	33	33	42	905	30	0	30
(Ribosomal_L36e);(Ribosomal_L7Ae)	1	96	110	96	110	9	308	35	11	100
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)	1	16	16	23	23	70	220	31	19	70
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)	1	54	68	54	68	36	491	34	16	100
(Ribosomal_L13e);(Ribosomal_L15e)	1	97	111	97	111	10	513	35	11	100
(Ribosomal_L13e);(Ribosomal_L18)	1	74	88	78	92	10	234	31	10	95
(Ribosomal_L13e);(Ribosomal_L27A)	1	97	111	97	111	10	1471	35	10	100
(Ribosomal_L13e);(Ribosomal_L29)	1	102	116	102	116	3	892	40	10	100
(Ribosomal_L13e);(Ribosomal_L36e)	1	93	107	93	107	10	645	33	10	100
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	50	50	53	53	10	227	34	8	94
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	95	109	97	111	5	269	36	11	98
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	99	113	101	115	10	1116	36	11	98
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	49	63	52	66	37	238	35	16	94
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)	1	23	23	27	27	47	222	30	9	85
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)	1	95	109	95	109	10	1047	35	11	100
(Ribosomal_L32e);(Ribosomal_L6e)	1	47	61	47	61	78	528	30	16	100
(Ribosomal_L35Ae);(Ribosomal_L6e)	1	57	71	57	71	39	858	37	15	100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	13	13	13	13	26	1606	100	23	100
(MHC_I)_(Ig_3);(V-set)_(DUF1968)	1	43	73	58	94	37	419	100	56	74
(C1-set);(MHC_I_3)_(Ig_3)	1	23	36	23	36	23	1237	100	97	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	14	31	16	34	78	2757	100	84	88
(Ribosomal_L21e);(Ribosomal_L29e)	1	92	106	92	106	10	475	31	8	100
(ECR1_N)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	10	10	10	10	84	894	100	80	100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	20	34	24	38	75	802	18	6	83
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	20	34	24	38	75	567	18	6	83
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)	1	20	34	24	38	75	529	18	6	83
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)	1	20	34	24	38	75	418	18	6	83
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	19	32	24	38	75	257	16	6	79
(Ribosomal_L28e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	41	41	43	43	10	930	32	0	95
(Ribosomal_L4)_(Ribos_L4_asso_C);(Ribosomal_L6e_N)_(Ribosoma l_L6e)	1	27	27	28	28	10	351	30	0	96
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)	1	14	20	14	20	84	902	100	90	100