Clusters with M>=10,SeqId<90 and pair Pfam Architecture

Pfam ArchitectureCluster##CFs/Cluster#Entries/Cluster#CFs/Group#Entries/GroupMinimum Seq IdentitySurface AreaIn PDBBA(%)In PISABA(%)CFs Cluster/Group(%)
(TBP)_(TBP);(TFIIA)1151615163666710025100
(TFIIA);(TFIIA_gamma_N)_(TFIIA_gamma_C)11516151634210910031100
(Ribosomal_L13);(Ribosomal_L20)121536121837210524992099
(Ribosomal_L13);(Ribosomal_L3)1931071091831040732885
(Ribosomal_L14);(Ribosomal_L19)12103572263800802991893
(Ribosomal_L14);(Ribosomal_L3)11131871201941041659994
(Ribosomal_L16);(Ribosomal_L27)144101521212227097485
(Ribosomal_L17);(Ribosomal_L32p)12043492173670354991794
(Ribosomal_L19);(Ribosomal_L3)12043502193730717981893
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)123235972402251005239
(Ribosomal_L20);(Ribosomal_L21p)122137122337810967991899
(Ribosomal_L22);(Ribosomal_L32p)12093592213762464991995
(Ribosomal_L23);(Ribosomal_L29)12154212254400486991596
(Ribosomal_L23);(Ribosomal_L29)210112254401054010094
(Ribosomal_L27A);(Ribosomal_L35p)12023422203730786981792
(Ribosomal_L27A);(Ribosomal_L35p)2111622037310546100625
(Ribosomal_L27A);(Ribosomal_L4)11802992203732460982182
(Ribosomal_L27A);(Ribosomal_L4)2223122037310430100010
(Ribosomal_L27A);(Ribosomal_L4)3122222037310355100415
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)11022011312407971991778
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)2101113124010659100188
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)11011151041182756371297
(AAA);(Proteasome_A_N)_(Proteasome)115152121614951008771
(AAA);(Proteasome_A_N)_(Proteasome)213132121154041005462
(CSN8_PSD8_EIF3K);(JAB)113132121313171007762
(DSS1_SEM1);(RPN7)_(PCI)122223131107291006871
(JAB);(JAB)_(MitMem_reg)1283036391929891007778
(JAB)_(MitMem_reg);(RPN7)_(PCI)122233334104681003967
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)11834183610225310097100
(JAB)_(MitMem_reg);(VWA_2)1242424244864010054100
(PCI);(RPN7)_(PCI)1151615168126610050100
(eIF-6);(Ribosomal_L14)1101010106086110060100
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)16276921061076725467
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)22929921065689452832
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)193107951091955331198
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)17387758910459291497
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)128283838102781003274
(Ribosomal_L13);(Ribosomal_L18A)17084941081568127474
(Ribosomal_L13);(Ribosomal_L35Ae)1575977911024129574
(Ribosomal_L14);(Ribosomal_L24e)1114188119194051360996
(Ribosomal_L15e);(Ribosomal_L29)19811298112203553511100
(Ribosomal_L15e);(Ribosomal_L7Ae)11121861121863919597100
(Ribosomal_L18);(Ribosomal_L27A)19711110011410888351097
(Ribosomal_L18A);(Ribosomal_L21e)1941089410818973310100
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)1921069510910303331197
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)110618010818210121959698
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)19110591105103003210100
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)1961101001141084832896
(Ribosomal_L24e);(Ribosomal_L3)1981121041180599331294
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)11933213583430090
(Ribosomal_L29);(Ribosomal_L37e)12323232338206394100
(Ribosomal_L34e);(Ribosomal_L7Ae)1951099911310263331096
(Ribosomal_L37e);(Ribosomal_L39)17589789239230281196
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)1911059510910244301096
(DNA_RNApol_7kD);(RNA_pol_A_bac)170176702072057510063100
(DNA_RNApol_7kD);(RNA_pol_N)1101430102401891007133
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)1551625519316100810062100
(RNA_pol_A_bac);(RNA_pol_L_2)170176702074203610073100
(RNA_pol_A_bac);(RNA_pol_N)1701767020720111010083100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)12711031164493591007387
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)1521545218522170310084100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)141143411743596310057100
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)14815355193234461007387
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)1421444217544155010081100
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)141143521854413791006879
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)1551625519337153510084100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)139141411745391301007295
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)1421444217542210410081100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)141143421755319041008098
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)141143421752914691008098
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)1348435108105961005897
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)11718171833205010017100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)11718171833172010011100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_beta)1101013133313531001077
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)1409442120220821005995
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)137913811617449995597
(TBP)_(TBP);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)114141414335191007100
(TBP)_(TBP);(TFIIA_gamma_N)_(TFIIA_gamma_C)1171817184045010028100
(Ran_BP1);(Ras)11438143822211010097100
(F_actin_cap_B);(F-actin_cap_A)11820182010353710065100
(Actin);(Gelsolin)111311131101206100100100
(ETF);(ETF)_(ETF_alpha)110161016103105100100100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)113681371104673100100100
(Me-amine-dh_H);(Me-amine-dh_L)1146914691215119994100
(Me-amine-dh_H);(Me-amine-dh_L)2146914691211429496100
(Skp1_POZ);(ubiquitin)11750175110107210096100
(Kinesin);(Tubulin)_(Tubulin_C)12424414128600962959
(Kinesin);(Tubulin)_(Tubulin_C)22323414128654963056
(Thrombin_light);(Trypsin)196359984301011621009998
(Thrombin_light);(Trypsin)22033984307426531520
(ubiquitin);(UQ_con)118183745278191006749
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)12074223125711406991966
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)2961103125711047733831
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)120943731257108651002067
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)2981123125711041132831
(OTU);(ubiquitin)11214121410102110093100
(Ribosom_S12_S23);(Ribosomal_S17)118138819844110221992591
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)1811061422660273982557
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)23312514226610218100623
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)311111422661291982558
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)193144179299103051002252
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)22525179299592904014
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)12640264024270155100
(Ribosomal_S10);(Ribosomal_S14)12184443215800801982268
(Ribosomal_S10);(Ribosomal_S14)2102116321580075034932
(Ribosomal_S10);(Ribosomal_S9)1161634411728881047
(Ribosomal_S11);(Ribosomal_S18)18928011533810312100877
(Ribosomal_S11);(Ribosomal_S21)111113512915701038972386
(Ribosomal_S11);(Ribosomal_S7)116635719542810243992285
(Ribosomal_S13);(Ribosomal_S19)13115483205790440861397
(Ribosomal_S14);(Ribosomal_S19)110513212315110306982385
(Ribosomal_S18);(Ribosomal_S21)1658810112810251952064
(Ribosomal_S18);(Ribosomal_S6)12124352234680929991495
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)116638426452310324992363
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)2587226452337367291022
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)12014193255841574992062
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)210511932558410544341032
(Ribosomal_S7);(Ribosomal_S9)12604652935280453841689
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)124532555104971009196
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)221502555235141009484
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)321512555315691009084
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)122522555105801009088
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)220502555232531009080
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)318342555312741009172
(ATP-synt);(ATP-synt_Eps)1243724371079510084100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab)_ (ATP-synt_ab_C)1397042731819821008793
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)1111111115215131000100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)2111111115210101000100
(ATP-synt_ab_N)_(ATP-synt_ab);(vATP-synt_E)11212131316642100092
(MHC_I)_(C1-set);(V-set)_(DUF1968)11545195538585914279
(Histone);(Histone)_(Histone_H2A_C)142127491871024951009386
(Histone);(Histone)_(Histone_H2A_C)2391684918742673999580
(Bclx_interact);(BH4)_(Bcl-2)112141214101009100100100
(Ras);(RhoGEF)_(PH)11315141610150810010093
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)11352135220177610096100
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)2102413522931610010077
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)130303636103703083
(Ribosomal_S11);(Ribosomal_S28e)1363643434630331684
(Ribosomal_S11);(Ribosomal_S3Ae)19210610211610867391090
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)11919202035255421195
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)12626313131230421984
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)14042414310210331498
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)1101115101115107383710100
(Ribosomal_S24e);(Ribosomal_S4)_(S4)1536754681023428798
(Ribosomal_S28e);(Ribosomal_S7)110311710511910114336998
(Ribosomal_S7e);(Ribosomal_S8)1100114100114104673610100
(Cullin)_(Cullin_Nedd8);(zf-rbx1)112121212102009100100100
(Mago_nashi);(RRM_1)11111111163127210091100
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)11523263552302913558
(Inhibitor_I9);(Peptidase_S8)11827182710126896100100
(MHC_I)_(C1-set);(V-set)_(C1-set)11115205640432932055
(V-set)_(C1-set);(V-set)_(DUF1968)11793091843241020371009897
(V-set)_(C1-set);(V-set)_(DUF1968)2101618432418726005
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)12832314120354972590
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)12331314110343942674
(C1-set);(MHC_I_3)_(C1-set)118711875201286100100100
(Synaptobrevin);(Syntaxin)_(SNARE)1202420254137210083100
(Pico_P1A);(Rhv)143127471351010131006591
(Pico_P1A);(Rhv)23612047135108091006277
(Pico_P1A);(Rhv)33310447135285331006070
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Nop10p)110101010271331100100100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)12659265910193710090100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)224562659102571009592
(MCM_N)_(MCM_OB)_(MCM);(MCM2_N)_(MCM_N)_(MCM_OB)_(MCM)11212121218256410042100
(Cyclin_N)_(Cyclin_C);(Pkinase)1228023119101533999896
(CENP-T_C);(Histone)110171422115201007671
(CENP-T_C);(Histone)210171422892751007671
(Ecotin);(Trypsin)11217121727952100100100
(Ecotin);(Trypsin)210151217275129310083
(Fer4_7);(PsaA_PsaB)1131913197841010047100
(Fer4_7);(PsaA_PsaB)213191319084110047100
(Fer4_7);(PsaD)11319131956147010047100
(Fer4_7);(PSI_PsaE)1131913191050310042100
(PsaA_PsaB);(PsaD)1131913195677510053100
(PsaA_PsaB);(PsaD)2131913195671410053100
(PsaA_PsaB);(PsaL)1121812183948110050100
(PsaA_PsaB);(PSI_8)1121812183564910050100
(PsaA_PsaB);(PSI_PsaE)1121812184342310044100
(PsaA_PsaB);(PSI_PsaE)210131218432951003883
(PsaA_PsaB);(PSI_PsaF)1111711174289510047100
(PsaA_PsaB);(PSI_PsaF)2111711174292010047100
(PsaA_PsaB);(PSI_PsaJ)1101310131236910046100
(PSI_PsaF);(PSI_PsaJ)1111711173868510041100
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)1164116431675110066100
(Cytochrom_B559);(Photo_RC)1174117441046610071100
(Cytochrom_B559);(PsbJ)1133813401037310050100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)1153916433113231006794
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)215401643103111006894
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)1133813401038410050100
(MSP);(Photo_RC)1153915421070410049100
(MSP);(Photo_RC)214381542316731005593
(MSP);(PSII)11538154243129710055100
(MSP);(PSII)213371542437671005187
(MSP);(PSII)3122515424538960880
(Photo_RC);(PsbH)1153915423127110064100
(Photo_RC);(PsbI)1154015421085910045100
(Photo_RC);(PsbL)1153915421040010056100
(Photo_RC);(PsbL)2154015421025210057100
(Photo_RC);(PsbT)1154015424251310057100
(Photo_RC);(PsbT)212351542312091005780
(Photo_RC);(PsbX)1143714413158810062100
(Photo_RC);(PSII)1164116431780310080100
(Photo_RC);(PSII)21640164331275110072100
(Photo_RC);(PSII)31639164310315510069100
(PsbH);(PsbX)1133613403129510056100
(PsbH);(PSII)11540154261186210070100
(PsbI);(PSII)1153815426445110047100
(PsbK);(PSII)1153815421481510063100
(PsbK);(Ycf9)1154015421226910048100
(PsbL);(PsbM)1143914411080510072100
(PsbL);(PsbT)1154015421059810075100
(PsbL);(PSII)1154015421059210060100
(PSII);(Ycf9)1153715421043410049100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)11432143231173710088100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)212271432318531009686
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)121372549449421008184
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)15589671011215241009082
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)21212671011318681008318
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)11039103965185510095100
(JAB)_(MitMem_reg);(TPR_19)_(PCI)11111111177147110073100
(PPR)_(DUF410)_(PCI);(RPN7)_(PCI)11111111184137610064100
(CSN8_PSD8_EIF3K);(TPR_19)_(PCI)_(Rpn3_C)11010101086206110080100
(Fimbrial);(PapD_N)_(PapD_C)112141214101663100100100
(Serpin);(Trypsin)11010141424112210010071
(Rhv);(VP4_2)114241628235931006788
(Rhv);(VP4_2)212201628652331006575
(eIF-1a);(Ribosom_S12_S23)113132222204621002359
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(zf- RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(R NA_pol_Rpb1_5)1112414437411621007579
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (zf-RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4 )_(RNA_pol_Rpb1_5)1112414437485921008879
(RNA_pol_Rpb6);(zf-RanBP)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_ (RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)1122514437423151008886
(G-alpha);(RGS)1101010103787510010100
(Photo_RC);(PRCH)_(PRC)1121311213537162110097100
(Photo_RC);(PRCH)_(PRC)2121311213537267810098100
(Cytochrom_C550);(Photo_RC)1123712395456510081100
(Cytochrom_C550);(PsbU)1113611383563610061100
(Cytochrom_C550);(PSII)1133613405490410081100
(MSP);(PsbU)1113511383551810051100
(PsbU);(PSII)1113611383544610061100
(PsbU);(PSII)2113411383543810056100
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)16717781208101130100983
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)2112181208318201003314
(Ribosomal_L31);(Ribosomal_S13)17516996199104091001878
(Ribosomal_L31);(Ribosomal_S19)16613894183104351002470
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7)11129112978776610090100
(Kazal_1);(Trypsin)1103510351063910097100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)11111111133113010082100
(HTH_9)_(RNA_pol_Rpc82)_(TFIIE_alpha);(RNA_pol_3_Rpc31)11111111166148310082100
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)11313131330169410085100
(RNA_pol_I_A49);(RNA_polI_A34)12024202438216510079100
(RNA_polI_A14);(SHS2_Rpb7-N)11923192384162510057100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)11031103316454110097100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)21031103351130510097100
(DUF5089);(Synaptobrevin)1101514191010941009371
(DUF5089);(Syntaxin)_(SNARE)113141314101455100100100
(AAA);(Prot_ATP_ID_OB)_(AAA)11212121234301410033100
(Prot_ATP_ID_OB)_(AAA);(Proteasome_A_N)_(Proteasome)112121515364171005880
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)191105911058492307100
(KH_2)_(Ribosomal_S3_C);(S10_plectin)191105911053885318100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)13953395310480198100
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)110211610211674653311100
(Ribosom_S12_S23);(Ribosomal_S30)1819582961047935999
(Ribosomal_L16);(Ribosomal_L21e)14255476110215251389
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)1718576901026226793
(Ribosomal_L24e);(Ribosomal_S6e)1405443571080915493
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)14357435735665269100
(Ribosomal_L7Ae);(Ribosomal_S27)13448385210509251089
(Ribosomal_L7Ae);(S10_plectin)1161620203128819080
(Ribosomal_S11);(Ribosomal_S26e)19410894108101106318100
(Ribosomal_S13);(Ribosomal_S19e)1951091001142440331095
(Ribosomal_S13);(Ribosomal_S25)186100911051046833995
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)11011151031178716351098
(Ribosomal_S14);(S10_plectin)188102901041028831798
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)179938610010100627992
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)14357435710538219100
(Ribosomal_S19e);(Ribosomal_S9)1525258583298331290
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)18810288102101524289100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)1881028810210544289100
(Ribosomal_S21e);(Ribosomal_S27e)149634963394373010100
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)196110961101013253310100
(Ribosomal_S21e);(Ribosomal_S8)18397849810279331099
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)194108991135541331095
(Ribosomal_S25);(Ribosomal_S7)188102951095609331093
(Ribosomal_S26e);(Ribosomal_S3Ae)1769082961027132793
(Ribosomal_S27e);(Ribosomal_S7e)1353537373136531995
(Ribosomal_S27e);(Ribosomal_S8)1100114100114104873410100
(Ribosomal_S30);(Ribosomal_S4)_(S4)15771577155063010100
(Ribosomal_S4)_(S4);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_ S4_C)150645064103872511100
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )1911059110553143110100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)1435745593631421796
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)14242505035632431784
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)13737414110494431190
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)1444447471058641594
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)14545454510548449100
(Ribosomal_S24e);(S4)11111121210228731892
(Ribosomal_S30);(S4)124242424104895012100
(Ribosomal_S5)_(Ribosomal_S5_C);(S4)1404043431037540893
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)141414141102894910100
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)14040404010353408100
(Ribosom_S12_S23);(ubiquitin)_(Ribosomal_S30)11616161655405250100
(S4);(ubiquitin)_(Ribosomal_S30)11616161655524250100
(Peptidase_C48);(Rad60-SLD)11014101415102610086100
(Peptidase_S8);(potato_inhibit)11129112932835100100100
(Ig_3)_(C1-set);(V-set)_(C1-set)12229222919169210093100
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)120202121248651001095
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)210102121248201001048
(TFIIF_alpha);(TFIIF_beta)111111515162113100973
(Flu_PA);(Flu_PB1)11315131510763810093100
(FXa_inhibition);(Trypsin)11815218179359089699100
(EF-hand_6)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(IQ)_(IQ)112121415401540100886
(GP120);(V-set)_(C1-set)1346111517410914986130
(GP120);(V-set)_(C1-set)21935115174332621006917
(GP120);(V-set)_(C1-set)3102511517458242049
(GP120);(V-set)_(C1-set)410251151745052596249
(GP120);(GP41)1213221327124519759100
(GP120);(ig)_(C2-set)_(CD4-extracel)11527152723104710059100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosom_ S12_S23)1181822241035250082
(Pico_P1A)_(Rhv);(Rhv)1101511171516871001391
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)1131315151917101006987
(Plug_translocon)_(SecY);(SecE)118202022171610855590
(Hormone_recep);(SRC-1)11017552281067610010018
(Kunitz_BPTI);(Trypsin)136903791166771009997
(Gla)_(EGF)_(FXa_inhibition);(Trypsin)112911293378969698100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)1101510171050410080100
(TNF);(TNFR_c6)_(TNFR_c6)_(TNFR_c6)_(TNFR_c6)2101510171065410080100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)11131581151611026321009998
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)2202211516121379141417
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)3101111516123325009
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)12264238510362410010096
(CBFD_NFYB_HMF);(Histone)1451644517714244610097100
(CBFD_NFYB_HMF);(Histone)219904517710496989642
(CBFD_NFYB_HMF);(Histone)319944517776270989442
(Med17);(Med6)1101010101074010020100
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)1112428421081310010039
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)114271932106491008974
(PKI);(Pkinase)1131401621377982959681
(PKI);(Pkinase)2101451621303880062
(Polyketide_cyc2);(PP2C)113271429108679610093
(CBFD_NFYB_HMF);(Histone)_(Histone_H2A_C)1251402615012423999696
(Ricin_B_lectin)_(Ricin_B_lectin);(RIP)11039103928154610095100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)11347135026176910096100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)213471350264609889100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)313471350268639891100
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)119146201834325841009995
(C1-set);(MHC_I)_(Ig_3)12735352745602212849997100
(C1-set);(MHC_I)_(Ig_3)23384274560832590012
(C1-set);(MHC_I)_(Ig_3)32138274560723423118
(C1-set);(MHC_I)_(Ig_3)4213827456072334308
(C1-set);(MHC_I)_(Ig_3)5206327456019261027
(C1-set);(MHC_I)_(Ig_3)62028274560412670117
(C1-set);(MHC_I)_(Ig_3)8136427456084215205
(C1-set);(MHC_I)_(Ig_3)9132027456086339005
(C1-set);(MHC_I)_(Ig_3)10113727456083511054
(C1-set);(MHC_I)_(Ig_3)11113727456069224004
(MHC_I)_(Ig_3);(V-set)_(C1-set)139615685534141004970
(C1-set);(MHC_I)_(C2-set_2)115211521751292100100100
(C1-set);(MHC_I)_(C1-set)11402261452421012591009897
(C1-set);(MHC_I)_(C1-set)2121414524266273778
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)11517151734242410065100
(Complex1_30kDa);(Complex1_49kDa)11517151728262610065100
(Complex1_49kDa);(Fer4_7)11113111334137710054100
(Complex1_49kDa);(Oxidored_q6)1161816183125510061100
(COX1);(COX2_TM)_(COX2)11662166533354610087100
(COX1);(COX3)11451145419253510086100
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)1296730811016011008797
(Cytochrom_C1);(UCR_14kD)123562672343991009188
(Cytochrom_C1);(UCR_hinge)12760277330108210085100
(Cytochrom_C1);(UCR_TM)_(Rieske)115441965517911009179
(Cytochrom_C1);(UCR_UQCRX_QCR9)124572773328411008989
(Cytochrom_C1);(UcrQ)1276127732172610084100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)122552672264011009185
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)12761277334119310084100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)115451965494961008979
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)21234196549896918863
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)1276027732199010085100
(Fer4_7);(Oxidored_q6)11214121410128810050100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)11839267210399878769
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)116401965719321008084
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)114321846262601008878
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)1276127732182510084100
(UCR_14kD);(UcrQ)123562672214641009188
(UCR_6-4kD);(UCR_UQCRX_QCR9)110221334795711007377
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)118481965326441008395
(UCR_TM)_(Rieske);(UcrQ)113371965625931008668
(NADHdh);(Oxidored_q3)11313131314101910054100
(NADHdh);(Oxidored_q4)1111113137427061004585
(Oxidored_q2);(Oxidored_q3)1111115155727051004573
(Oxidored_q2);(Oxidored_q4)112121414194041005086
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)1121212123253110050100
(Oxidored_q3);(Oxidored_q4)1111113135717831004585
(MWFE);(NADHdh)11111111179146410045100
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)1101010107277710050100
(NADHdh);(NADHdh_A3)1111111114365610045100
(NADHdh_A3);(Oxidored_q4)1101010104335010050100
(NDUF_B4);(Oxidored_q5_N)_(Proton_antipo_M)11010101061131610050100
(NDUF_B4);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)1101010106184710050100
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)1111111114599510045100
(Ndufs5);(Oxidored_q2)1111111117445910045100
(Ndufs5);(Oxidored_q3)1101010105771310050100
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)1101010106379110050100
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)11111111163161510045100
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)1111111115763210045100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)11111111163118910045100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_N)_(Proton_ antipo_M)_(NADH5_C)11212121225228210050100
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)1101010106390210040100
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)1961109811210661341098
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)195109971113512331098
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)285999711110279321088
(Ribosomal_L15e);(Ribosomal_L36e)19811298112105303611100
(Ribosomal_L18);(Ribosomal_L28e)14242424210231332100
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)18195911051026133989
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)1971111001141463351197
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)1951099510975933410100
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)183978810210223351094
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)1881028810273723210100
(Ribosomal_L27A);(Ribosomal_L36e)1779180941023231996
(Ribosomal_L28e);(Ribosomal_L32e)1414146461076837089
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)1282829291053229097
(Ribosomal_L32e);(Ribosomal_L6e_N)_(Ribosomal_L6e)1282829298322629097
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)1232333331085730070
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)2101033334290530030
(Ribosomal_L36e);(Ribosomal_L7Ae)1961109611093083511100
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)11616232370220311970
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)154685468364913416100
(Ribosomal_L13e);(Ribosomal_L15e)19711197111105133511100
(Ribosomal_L13e);(Ribosomal_L18)17488789210234311095
(Ribosomal_L13e);(Ribosomal_L27A)197111971111014713510100
(Ribosomal_L13e);(Ribosomal_L29)110211610211638924010100
(Ribosomal_L13e);(Ribosomal_L36e)19310793107106453310100
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)1505053531022734894
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)195109971115269361198
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)199113101115101116361198
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)14963526637238351694
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)1232327274722230985
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)195109951091010473511100
(Ribosomal_L32e);(Ribosomal_L6e)147614761785283016100
(Ribosomal_L35Ae);(Ribosomal_L6e)157715771398583715100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)11313131326160610023100
(MHC_I)_(Ig_3);(V-set)_(DUF1968)143735894374191005674
(C1-set);(MHC_I_3)_(Ig_3)12336233623123710097100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)1143116347827571008488
(Ribosomal_L21e);(Ribosomal_L29e)1921069210610475318100
(ECR1_N)_(KH_6);(RNase_PH)_(RNase_PH_C)1101010108489410080100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)1203424387580218683
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)1203424387556718683
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)1203424387552918683
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)1203424387541818683
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)1193224387525716679
(Ribosomal_L28e);(Ribosomal_L4)_(Ribos_L4_asso_C)1414143431093032095
(Ribosomal_L4)_(Ribos_L4_asso_C);(Ribosomal_L6e_N)_(Ribosoma l_L6e)1272728281035130096
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)1142014208490210090100