Protein Common Interface Database

Clusters with M>=10,SeqId<90 and pair Pfam Architecture

Pfam Architecture	Cluster#	#CFs/Cluster	#Entries/Cluster	#CFs/Group	#Entries/Group	Minimum Seq Identity	Surface Area	In PDBBA(%)	In PISABA(%)	CFs Cluster/Group(%)
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	72	85	72	91	5	2627	100	39	100
(2Fe-2S_thioredx);(ETC_C1_NDUFA4)	1	10	10	38	38	31	294	100	20	26
(CI-B14_5a);(Complex1_30kDa)	1	47	47	47	47	83	1282	100	13	100
(CI-B14_5a);(Complex1_49kDa)	1	47	47	47	47	83	1484	100	13	100
(CI-B14_5a);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	41	41	46	46	83	224	100	12	89
(CI-B14_5a);(ETC_C1_NDUFA5)	1	44	44	46	46	83	381	100	11	96
(CI-B14_5a);(Fer4_7)	1	47	47	47	47	83	1001	100	13	100
(CI-B14_5a);(GRIM-19)	1	43	43	46	46	9	474	100	12	93
(CI-B14_5a);(NDUFA12)	1	44	44	46	46	83	495	100	14	96
(Complex1_30kDa);(Complex1_49kDa)	1	83	91	83	91	3	2428	100	30	100
(Complex1_30kDa);(Complex1_LYR)	1	60	60	60	60	17	1054	100	20	100
(Complex1_30kDa);(ETC_C1_NDUFA4)	1	57	57	57	57	29	1327	100	14	100
(Complex1_30kDa);(ETC_C1_NDUFA5)	1	61	61	61	61	30	1410	100	20	100
(Complex1_49kDa);(dNK)	1	42	42	45	45	78	460	100	7	93
(Complex1_49kDa);(ESSS)	1	26	26	37	37	79	228	100	12	70
(Complex1_49kDa);(ETC_C1_NDUFA5)	1	57	57	60	60	30	417	100	21	95
(Complex1_49kDa);(Fer4_7)	1	82	90	82	90	4	1745	100	30	100
(Complex1_49kDa);(GRIM-19)	1	60	60	60	60	22	928	100	20	100
(Complex1_49kDa);(NADHdh)	1	74	79	77	82	3	1097	100	24	96
(Complex1_49kDa);(Oxidored_q2)	1	26	26	43	43	65	255	100	4	60
(Complex1_49kDa);(Oxidored_q4)	1	57	62	69	74	10	460	100	29	83
(Complex1_49kDa);(Oxidored_q5_N)_(Proton_antipo_M)	1	41	41	45	45	66	312	100	7	91
(Complex1_49kDa);(Oxidored_q6)	1	83	91	83	91	1	1456	100	30	100
(Complex1_49kDa);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	48	48	49	49	54	848	100	15	98
(Complex1_49kDa);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_ C)	1	29	29	48	48	64	393	100	10	60
(Complex1_49kDa);(zf-CHCC)	1	39	39	45	45	25	221	100	13	87
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(ETC_C1_NDUFA4)	1	53	53	56	56	29	511	100	15	95
(Complex1_LYR);(ETC_C1_NDUFA4)	1	55	55	55	55	17	656	100	15	100
(Complex1_LYR);(NDUF_B12)	1	51	51	53	53	22	455	100	14	96
(Complex1_LYR);(NDUF_B4)	1	51	51	55	55	61	1305	100	16	93
(Complex1_LYR);(NDUF_B5)	1	48	48	51	51	24	533	100	17	94
(Complex1_LYR);(NDUF_B6)	1	51	51	51	51	25	1017	100	16	100
(Complex1_LYR);(Oxidored_q5_N)_(Proton_antipo_M)	1	55	55	59	59	22	410	100	18	93
(Complex1_LYR);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	59	59	59	59	22	1372	100	19	100
(COX1);(COX2_TM)_(COX2)	1	28	86	28	88	15	3567	100	76	100
(COX1);(COX3)	1	29	79	29	79	7	2445	100	73	100
(COX1);(COX4)	1	14	62	18	66	16	1334	100	76	78
(COX1);(COX7a)	1	13	60	15	63	3	263	100	73	87
(COX1);(COX7C)	1	20	67	20	68	22	1695	100	67	100
(COX1);(COX8)	1	12	59	12	60	42	1044	100	73	100
(COX2_TM)_(COX2);(COX4)	1	12	59	17	65	16	860	100	78	71
(COX2_TM)_(COX2);(COX6B)	1	20	67	20	68	41	966	100	66	100
(COX2_TM)_(COX2);(COX6C)	1	18	66	18	66	11	1440	100	71	100
(COX3);(COX5B)	1	20	67	20	68	14	899	100	69	100
(COX3);(COX6B)	1	17	64	19	67	41	251	100	70	89
(COX4);(COX5A)	1	14	60	18	66	6	1248	100	73	78
(COX4);(COX7B)	1	12	58	12	60	81	1437	100	72	100
(COX5A);(COX6C)	1	11	57	16	64	17	614	100	70	69
(COX7C);(COX8)	1	10	57	12	60	42	718	100	74	83
(Cytochrom_C1);(UCR_14kD)	1	37	70	40	75	23	402	100	79	92
(Cytochrom_C1);(UCR_hinge)	1	41	74	41	76	2	1087	100	74	100
(Cytochrom_C1);(UCR_UQCRX_QCR9)	1	38	70	41	76	0	845	100	77	93
(Cytochrom_C1);(UcrQ)	1	39	73	39	74	0	730	100	75	100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)	1	36	69	40	75	5	423	100	78	90
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)	1	41	75	41	76	23	1278	100	73	100
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)	1	39	72	39	74	4	1021	100	76	100
(dNK);(ESSS)	1	43	43	47	47	58	413	100	14	91
(dNK);(ETC_C1_NDUFA5)	1	10	10	37	37	78	327	100	0	27
(dNK);(NDUF_C2)	1	50	50	50	50	42	382	100	14	100
(dNK);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	51	51	51	51	54	1583	100	14	100
(ESSS);(NDUF_B5)	1	50	50	51	51	24	891	100	16	98
(ESSS);(NDUFB10)	1	51	51	51	51	31	1518	100	16	100
(ESSS);(Oxidored_q5_N)_(Proton_antipo_M)	1	51	51	51	51	5	1592	100	16	100
(ETC_C1_NDUFA4);(Fer4_7)	1	51	51	54	54	30	248	100	14	94
(Fer4_7);(GRIM-19)	1	55	55	59	59	22	357	100	20	93
(Fer4_7);(NDUFA12)	1	58	58	58	58	0	1968	100	19	100
(Fer4_7);(Oxidored_q6)	1	82	90	82	90	1	1281	100	30	100
(Fer4_7);(zf-CHCC)	1	60	60	60	60	4	956	100	18	100
(GRIM-19);(MWFE)	1	58	58	61	61	21	575	100	19	95
(GRIM-19);(NADHdh)	1	62	62	62	62	6	917	100	18	100
(GRIM-19);(NADHdh_A3)	1	54	54	57	57	21	571	100	20	95
(MWFE);(NADHdh)	1	62	62	62	62	2	1536	100	18	100
(MWFE);(Oxidored_q3)	1	53	53	56	56	1	314	100	13	95
(NADH_B2);(NDUF_B7)	1	53	53	53	53	22	686	100	13	100
(NADH_B2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	54	54	54	54	21	1452	100	13	100
(NADH_oxidored);(NDUF_B5)	1	49	49	51	51	24	633	100	16	96
(NADH_oxidored);(NDUFB10)	1	44	44	47	47	9	317	100	9	94
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)	1	50	50	51	51	66	731	100	16	98
(NADHdh);(NADHdh_A3)	1	62	62	62	62	11	660	100	18	100
(NADHdh);(NDUFA12)	1	30	30	41	41	26	228	100	10	73
(NADHdh);(Oxidored_q3)	1	77	82	80	85	0	1032	100	26	96
(NADHdh);(Oxidored_q4)	1	80	85	80	85	3	2690	100	25	100
(NADHdh);(Oxidored_q6)	1	77	82	77	82	0	1168	100	23	100
(NDUF_B12);(PP-binding)	1	52	52	53	53	2	619	100	13	98
(NDUF_B4);(NDUF_B8)	1	47	47	53	53	75	1795	100	9	89
(NDUF_B4);(NDUFB10)	1	48	48	51	51	9	380	100	17	94
(NDUF_B5);(NDUF_B6)	1	44	44	47	47	73	255	100	9	94
(NDUF_B5);(NDUF_C2)	1	48	48	51	51	24	682	100	17	94
(NDUF_B5);(NDUFB10)	1	51	51	51	51	9	1077	100	16	100
(NDUF_B5);(Oxidored_q5_N)_(Proton_antipo_M)	1	52	52	52	52	24	1173	100	15	100
(NDUF_B5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	45	45	51	51	54	295	100	11	88
(NDUF_B6);(NDUF_B7)	1	46	46	47	47	69	775	100	9	98
(NDUF_B6);(NDUFB10)	1	47	47	51	51	9	1172	100	9	92
(NDUF_B6);(PP-binding)	1	48	48	51	51	2	526	100	17	94
(NDUF_B6);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	47	47	51	51	64	898	100	9	92
(NDUF_B7);(NDUF_B8)	1	51	51	51	51	21	1298	100	12	100
(NDUF_B7);(NDUFB10)	1	48	48	55	55	9	525	100	10	87
(NDUF_B7);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	54	54	58	58	23	868	100	19	93
(NDUF_B8);(Oxidored_q5_N)_(Proton_antipo_M)	1	49	49	52	52	21	494	100	12	94
(NDUF_B8);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	52	52	52	52	21	1646	100	12	100
(NDUF_C2);(NDUFB10)	1	51	51	51	51	9	703	100	16	100
(NDUF_C2);(Ndufs5)	1	29	29	40	40	70	226	100	7	72
(NDUF_C2);(Oxidored_q5_N)_(Proton_antipo_M)	1	41	41	53	53	66	243	100	10	77
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	52	52	52	52	42	1002	100	15	100
(NDUFA12);(Oxidored_q6)	1	55	55	58	58	26	309	100	20	95
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)	1	49	49	60	60	9	744	100	16	82
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	49	49	60	60	9	1069	100	16	82
(Ndufs5);(Oxidored_q2)	1	61	61	61	61	21	492	100	18	100
(Ndufs5);(Oxidored_q3)	1	48	48	59	59	51	785	100	17	81
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	51	51	51	51	54	873	100	16	100
(Oxidored_q2);(Oxidored_q3)	1	81	86	81	86	0	2831	100	26	100
(Oxidored_q2);(Oxidored_q4)	1	76	81	81	86	1	411	100	27	94
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	52	52	52	52	6	1616	100	15	100
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	56	56	60	60	6	489	100	21	93
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	49	49	52	52	0	753	100	16	94
(Oxidored_q4);(Oxidored_q6)	1	41	46	64	69	24	506	100	26	64
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)	1	52	52	52	52	54	1172	100	15	100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_N)_(Proton_ antipo_M)_(NADH5_C)	1	61	61	61	61	27	2210	100	20	100
(Oxidored_q5_N)_(Proton_antipo_M);(Tim17)	1	42	42	55	55	64	219	100	14	76
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)	1	31	52	40	75	21	398	88	71	78
(Peptidase_M16)_(Peptidase_M16_C);(UCR_6-4kD)	1	10	22	13	26	82	330	100	77	77
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)	1	25	43	34	69	26	257	100	77	74
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)	1	39	73	39	74	21	837	100	75	100
(PP-binding);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	44	44	47	47	2	292	100	16	94
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)	1	47	47	51	51	41	966	100	15	92
(Proton_antipo_M)_(NADH_dehy_S2_C);(Tim17)	1	48	48	50	50	54	513	100	15	96
(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C);(Tim17)	1	47	47	56	56	18	625	100	19	84
(UCR_14kD);(UcrQ)	1	35	68	38	73	17	465	100	81	92
(UCR_6-4kD);(UCR_UQCRX_QCR9)	1	11	24	14	27	79	556	100	75	79
(UCR_hinge);(UcrQ)	1	17	39	26	55	62	297	100	79	65
(2Fe-2S_thioredx);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Moly bdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	14	14	14	14	52	845	100	36	100
(2Fe-2S_thioredx);(NDUFV3)	1	46	46	46	46	70	992	100	13	100
(CHCH);(GRIM-19)	1	55	55	55	55	22	1706	100	16	100
(CHCH);(MWFE)	1	55	55	55	55	21	929	100	16	100
(CHCH);(NADHdh)	1	36	36	48	48	57	258	100	22	75
(CHCH);(NADHdh_A3)	1	49	49	52	52	39	1098	100	16	94
(CHCH);(NDUF_B5)	1	45	45	49	49	24	618	100	16	92
(CHCH);(NDUF_C2)	1	48	48	49	49	42	639	100	17	98
(CHCH);(Ndufs5)	1	46	46	49	49	57	531	100	17	94
(CHCH);(Oxidored_q5_N)_(Proton_antipo_M)	1	42	42	45	45	67	257	100	10	93
(CHCH);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	42	42	45	45	57	257	100	10	93
(Complex1_30kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molyb dop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	14	14	14	14	47	532	100	36	100
(Complex1_30kDa);(NmrA)	1	36	36	39	39	82	544	100	8	92
(Complex1_49kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molyb dop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	14	14	14	14	52	919	100	36	100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(Fer2_4)_(NADH-G_4Fe-4S_ 3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	14	14	14	14	52	1478	100	36	100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(NDUFV3)	1	46	46	46	46	70	1130	100	13	100
(Complex1_LYR);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdo p_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	14	14	14	14	27	467	100	36	100
(Complex1_LYR);(NmrA)	1	36	36	39	39	82	381	100	8	92
(Cytochrom_C1);(UCR_TM)_(Rieske)	1	26	54	30	65	0	785	100	78	87
(dNK);(NADH_dh_m_C1)	1	47	47	50	50	58	577	100	17	94
(ETC_C1_NDUFA4);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybd op_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	13	13	13	13	29	2029	100	31	100
(ETC_C1_NDUFA4);(NDUFV3)	1	38	38	41	41	70	261	100	13	93
(ETC_C1_NDUFA4);(NmrA)	1	36	36	39	39	82	347	100	8	92
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(Fer4_7)	1	14	14	14	14	52	525	100	36	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(L51_S25_CI-B8)	1	14	14	14	14	33	1179	100	36	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(NDUFA12)	1	13	13	13	13	33	698	100	31	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Fer4_10)_(Molybdop_Fe4S4)_(Molyb dopterin)_(NADH_dhqG_C);(zf-CHCC)	1	13	13	13	13	26	468	100	31	100
(NADH_dh_m_C1);(NDUF_C2)	1	50	50	50	50	42	850	100	16	100
(NmrA);(Oxidored_q6)	1	36	36	39	39	82	679	100	8	92
(NmrA);(zf-CHCC)	1	36	36	39	39	82	515	100	8	92
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)	1	29	58	30	65	29	868	100	72	97
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)	1	29	58	30	65	31	632	100	72	97
(UCR_TM)_(Rieske);(UcrQ)	1	26	56	30	65	6	585	100	77	87
(2Fe-2S_thioredx);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4 )_(Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	46	724	100	10	100
(CI-B14_5a);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Mol ybdopterin)_(NADH_dhqG_C)	1	33	33	36	36	84	491	100	12	92
(Complex1_30kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)	1	38	38	39	39	50	682	100	11	97
(Complex1_49kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	54	865	100	10	100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(Fer2_4)_(NADH-G_4Fe-4S_ 3)_(Molybdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	54	1307	100	10	100
(Complex1_LYR);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_( Molybdopterin)_(NADH_dhqG_C)	1	36	36	39	39	32	569	100	11	92
(ETC_C1_NDUFA4);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_ (Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	38	1956	100	10	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(Fer4_7)	1	37	37	39	39	54	522	100	11	95
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(L51_S25_CI-B8)	1	39	39	39	39	39	1196	100	10	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(NDUFA12)	1	39	39	39	39	34	661	100	10	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(zf-CHCC)	1	38	38	39	39	31	470	100	11	97
(Complex1_30kDa);(NAD_binding_10)	1	15	15	15	15	33	588	100	33	100
(Complex1_LYR);(NAD_binding_10)	1	13	13	13	13	29	588	100	38	100
(ETC_C1_NDUFA4);(NAD_binding_10)	1	14	14	14	14	30	374	100	29	100
(NAD_binding_10);(Oxidored_q6)	1	15	15	15	15	33	1026	100	33	100
(NAD_binding_10);(zf-CHCC)	1	12	12	12	12	30	569	100	33	100
(Oxidored_q2);(Proton_antipo_M)	1	22	27	22	27	5	1533	100	48	100
(Oxidored_q3);(Proton_antipo_M)	1	20	25	20	25	14	1119	100	52	100
(Oxidored_q4);(Proton_antipo_M)	1	18	23	20	25	17	327	100	57	90
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)	1	10	10	15	20	17	1663	100	10	67
(CHCH);(MRP-S35)	1	29	29	29	29	85	376	100	7	100
(CHCH);(Ribosomal_S21)	1	29	29	32	32	85	919	100	7	91
(CHCH);(Ribosomal_S6)	1	29	29	29	29	85	509	100	7	100
(CHCH);(Ribosomal_S7)	1	29	29	32	32	85	833	100	7	91
(CR6_interact);(MRP-L51)	1	30	30	30	30	76	421	100	13	100
(CR6_interact);(Ribosomal_L27A)	1	29	29	29	29	76	1068	100	14	100
(CR6_interact);(Ribosomal_L28)	1	29	29	29	29	76	380	100	14	100
(CR6_interact);(Ribosomal_L33)	1	29	29	29	29	76	486	100	14	100
(CR6_interact);(Ribosomal_L4)	1	29	29	29	29	76	460	100	14	100
(DAP3);(MRP-L46)	1	16	16	18	18	85	299	100	0	89
(DAP3);(MRP-S28)	1	28	28	37	37	84	1107	100	7	76
(DAP3);(Ribosomal_S7)	1	29	29	36	36	85	914	100	7	81
(DAP3);(Ribosomal_S9)	1	35	35	42	42	17	959	100	6	83
(DUF1713);(Ribosomal_S15)	1	29	29	29	29	5	617	100	7	100
(Img2);(MRP-63)	1	30	30	30	30	72	597	100	13	100
(KOW)_(ribosomal_L24);(MRP-L27)	1	30	30	30	30	22	1360	100	13	100
(KOW)_(ribosomal_L24);(MRP-L47)	1	36	36	36	36	7	1718	100	14	100
(KOW)_(ribosomal_L24);(Ribosomal_L23)	1	30	30	35	35	81	772	100	17	86
(L51_S25_CI-B8);(MRP-63)	1	30	30	30	30	72	371	100	13	100
(L51_S25_CI-B8);(MRP-S22)	1	29	29	29	29	68	458	100	7	100
(L51_S25_CI-B8);(MRP-S26)	1	29	29	29	29	75	604	100	7	100
(L51_S25_CI-B8);(MRP-S32)	1	30	30	30	30	8	676	100	17	100
(L51_S25_CI-B8);(Ribosomal_L13)	1	39	39	43	43	18	782	97	13	91
(L51_S25_CI-B8);(Ribosomal_L20)	1	31	31	31	31	22	594	100	13	100
(L51_S25_CI-B8);(Ribosomal_L50)	1	30	30	39	39	80	690	100	17	77
(L51_S25_CI-B8);(Ribosomal_S16)	1	29	29	29	29	87	631	100	7	100
(L51_S25_CI-B8);(Ribosomal_S17)	1	29	29	29	29	86	1317	100	7	100
(L51_S25_CI-B8);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	82	537	100	7	100
(Mitoc_L55);(MRP-L28)	1	28	28	28	28	70	870	100	14	100
(Mitoc_L55);(MRP-L46)	1	28	28	28	28	70	1207	100	14	100
(Mitoc_L55);(Ribosomal_S10)	1	28	28	28	28	70	960	100	14	100
(MRP_L53);(Ribosomal_L10)	1	29	29	29	29	85	853	100	14	100
(MRP_L53);(Ribosomal_S18)	1	30	30	30	30	85	522	100	13	100
(MRP-63);(MRPL52)	1	30	30	30	30	72	383	100	13	100
(MRP-63);(Ribosomal_L10)	1	29	29	29	29	72	509	100	14	100
(MRP-63);(Ribosomal_L16)	1	29	29	29	29	72	320	100	14	100
(MRP-63);(Ribosomal_L27A)	1	29	29	29	29	72	526	100	14	100
(MRP-63);(Ribosomal_L30)	1	29	29	29	29	72	1217	100	14	100
(MRP-63);(Ribosomal_S18)	1	26	26	26	26	72	247	100	8	100
(MRP-L27);(Ribosomal_L23)	1	38	38	38	38	5	1453	97	13	100
(MRP-L27);(Ribosomal_L28)	1	29	29	29	29	77	504	100	14	100
(MRP-L27);(Ribosomal_L34)	1	38	38	38	38	22	438	97	13	100
(MRP-L28);(MRP-L46)	1	35	35	35	35	11	2266	100	17	100
(MRP-L28);(Ribosomal_S10)	1	30	30	30	30	72	1822	100	17	100
(MRP-L46);(Ribosomal_S10)	1	30	30	30	30	76	362	100	17	100
(MRP-L47);(MRP-L51)	1	29	29	29	29	82	233	100	14	100
(MRP-L47);(PDCD9)	1	29	29	29	29	83	558	100	14	100
(MRP-L47);(Ribosomal_L28)	1	30	30	30	30	83	453	100	17	100
(MRP-L47);(Ribosomal_L34)	1	30	30	30	30	83	514	100	17	100
(MRP-L51);(Ribonucleas_3_3)_(dsrm)	1	30	30	30	30	82	369	100	13	100
(MRP-L51);(Ribosomal_L27A)	1	29	29	29	29	82	287	100	14	100
(MRP-L51);(Ribosomal_L28)	1	29	29	29	29	82	325	100	14	100
(MRP-L51);(Ribosomal_L35p)	1	29	29	29	29	80	400	100	14	100
(MRP-L51);(Ribosomal_L4)	1	29	29	29	29	82	1832	100	14	100
(MRPL52);(PBP)	1	10	10	15	15	81	503	100	10	67
(MRPL52);(Ribosomal_L20)	1	29	29	29	29	81	395	100	14	100
(MRPL52);(Ribosomal_L21p)	1	31	31	31	31	7	671	100	13	100
(MRPL52);(Ribosomal_L30)	1	29	29	31	31	81	1059	100	14	94
(MRP-S22);(MRP-S34)	1	28	28	29	29	68	261	100	7	97
(MRP-S22);(Ribosomal_S16)	1	29	29	29	29	68	1091	100	7	100
(MRP-S22);(Ribosomal_S18)	1	29	29	29	29	68	2014	100	7	100
(MRP-S22);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	68	1188	100	7	100
(MRP-S23);(MRP-S35)	1	29	29	29	29	82	907	100	7	100
(MRP-S23);(Ribosomal_S18)	1	29	29	29	29	80	463	100	7	100
(MRP-S23);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	82	585	100	7	100
(MRP-S24);(MRP-S28)	1	28	28	28	28	84	1361	100	7	100
(MRP-S24);(MRP-S31)	1	29	29	29	29	75	277	100	7	100
(MRP-S24);(MRP-S33)	1	29	29	29	29	83	536	100	7	100
(MRP-S24);(Ribosomal_S10)	1	29	29	29	29	13	595	100	7	100
(MRP-S24);(Ribosomal_S14)	1	29	29	29	29	86	985	100	7	100
(MRP-S24);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	82	516	100	7	100
(MRP-S24);(Ribosomal_S9)	1	20	20	23	23	78	225	100	10	87
(MRP-S26);(MRP-S34)	1	29	29	29	29	75	731	100	7	100
(MRP-S26);(Ribosomal_S17)	1	27	27	27	27	75	264	100	7	100
(MRP-S26);(Ribosomal_S18)	1	29	29	29	29	75	794	100	7	100
(MRP-S26);(Ribosomal_S18)	2	29	29	29	29	75	605	100	7	100
(MRP-S27);(MRP-S34)	1	27	27	27	27	81	1339	100	7	100
(MRP-S27);(Ribosomal_L19)	1	14	14	14	14	81	529	100	0	100
(MRP-S27);(Ribosomal_S18)	1	27	27	27	27	81	297	100	7	100
(MRP-S28);(MRP-S31)	1	28	28	28	28	75	1161	100	7	100
(MRP-S28);(Ribosomal_S9)	1	28	28	35	35	78	1313	100	7	80
(MRP-S31);(MRP-S33)	1	29	29	29	29	75	672	100	7	100
(MRP-S31);(Ribosomal_S10)	1	29	29	29	29	75	250	100	7	100
(MRP-S31);(Ribosomal_S14)	1	29	29	29	29	75	605	100	7	100
(MRP-S32);(Ribonucleas_3_3)_(dsrm)	1	29	29	29	29	69	681	100	17	100
(MRP-S32);(Ribosomal_L13)	1	29	29	29	29	30	295	100	14	100
(MRP-S32);(Ribosomal_L20)	1	28	28	28	28	69	882	100	14	100
(MRP-S32);(Ribosomal_L21p)	1	28	28	28	28	69	821	100	14	100
(MRP-S32);(Ribosomal_L22)	1	29	29	29	29	69	408	100	14	100
(MRP-S32);(TGS)_(tRNA_SAD)	1	17	17	17	17	73	398	100	6	100
(MRP-S33);(Ribosomal_S14)	1	36	36	36	36	22	1209	97	6	100
(MRP-S33);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	82	1026	100	7	100
(MRP-S34);(Ribosomal_S16)	1	23	23	30	30	82	230	100	9	77
(MRP-S34);(Ribosomal_S18)	1	29	29	29	29	82	763	100	7	100
(MRP-S35);(Ribosomal_S18)	1	20	20	24	24	83	218	100	10	83
(MRP-S35);(Ribosomal_S2)	1	29	29	29	29	7	1101	100	7	100
(MRP-S35);(Ribosomal_S21)	1	29	29	29	29	85	698	100	7	100
(PBP);(RF-1)	1	31	31	31	31	77	966	100	13	100
(PBP);(Ribosomal_L18p)	1	30	30	30	30	88	2743	100	13	100
(PBP);(Ribosomal_L27)	1	29	29	36	36	87	1817	100	14	81
(PBP);(Ribosomal_L27A)	1	29	29	34	34	88	256	100	14	85
(PBP);(Ribosomal_L35p)	1	29	29	29	29	80	1115	100	14	100
(PBP);(Ribosomal_S10)	1	30	30	30	30	76	648	100	13	100
(PDCD9);(Ribosomal_L17)	1	27	27	27	27	82	372	100	15	100
(PDCD9);(Ribosomal_L2)_(Ribosomal_L2_C)	1	29	29	29	29	85	788	100	14	100
(PDCD9);(Ribosomal_L23)	1	29	29	29	29	81	537	100	14	100
(PDCD9);(Ribosomal_L28)	1	29	29	29	29	83	826	100	14	100
(RF-1);(Ribosomal_L18p)	1	28	28	28	28	77	442	100	14	100
(RF-1);(Ribosomal_L27A)	1	30	30	30	30	77	1555	100	13	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L13)	1	33	33	33	33	14	805	97	12	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L20)	1	29	29	29	29	87	372	100	14	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L21p)	1	29	29	29	29	77	319	100	14	100
(Ribosom_S12_S23);(Ribosomal_S17)	1	320	545	364	651	0	221	100	16	88
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	2	15	15	33	34	84	591	100	7	45
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	3	15	15	33	34	84	607	100	7	45
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	4	13	13	33	34	84	425	100	8	39
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	5	13	13	33	34	84	346	100	8	39
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	6	12	12	33	34	84	298	100	8	36
(Ribosomal_L10);(Ribosomal_L12_N)_(Ribosomal_L12)	7	11	11	33	34	84	332	100	9	33
(Ribosomal_L10);(Ribosomal_L16)	1	30	30	30	30	85	1235	100	17	100
(Ribosomal_L10);(Ribosomal_L37)	1	18	18	18	18	76	256	100	11	100
(Ribosomal_L10);(Ribosomal_S18)	1	28	28	28	28	85	236	100	11	100
(Ribosomal_L13);(Ribosomal_L22)	1	39	39	44	44	21	532	97	15	89
(Ribosomal_L13);(Ribosomal_S18)	1	29	29	29	29	85	2364	100	14	100
(Ribosomal_L14);(Ribosomal_L3)	1	224	297	232	305	0	437	92	9	97
(Ribosomal_L16);(Ribosomal_L27)	1	53	145	66	181	7	252	100	3	80
(Ribosomal_L16);(Ribosomal_L30)	1	30	30	30	30	81	430	100	17	100
(Ribosomal_L16);(Ribosomal_L37)	1	28	28	28	28	20	419	100	14	100
(Ribosomal_L17);(Ribosomal_L19)	1	28	28	28	28	80	635	100	18	100
(Ribosomal_L17);(Ribosomal_L3)	1	32	32	37	37	29	588	100	16	86
(Ribosomal_L17);(TGS)_(tRNA_SAD)	1	27	27	27	27	89	742	100	15	100
(Ribosomal_L20);(Ribosomal_L21p)	1	423	621	423	621	0	979	100	14	100
(Ribosomal_L20);(Ribosomal_L22)	1	30	30	30	30	86	273	100	17	100
(Ribosomal_L21p);(Ribosomal_S18)	1	29	29	29	29	77	540	100	14	100
(Ribosomal_L22);(Ribosomal_L32p)	1	428	626	428	626	0	469	100	15	100
(Ribosomal_L22);(TGS)_(tRNA_SAD)	1	30	30	30	30	78	358	100	13	100
(Ribosomal_L27);(Ribosomal_S10)	1	29	29	29	29	76	396	100	14	100
(Ribosomal_L3);(TGS)_(tRNA_SAD)	1	30	30	30	30	82	577	100	13	100
(Ribosomal_L32p);(TGS)_(tRNA_SAD)	1	29	29	29	29	85	262	100	14	100
(Ribosomal_L4);(Ribosomal_L50)	1	29	29	38	38	80	1076	100	14	76
(Ribosomal_S16);(Ribosomal_S18)	1	29	29	29	29	84	565	100	7	100
(Ribosomal_S18);(Ribosomal_S5)_(Ribosomal_S5_C)	1	29	29	29	29	82	590	100	7	100
(Ribosomal_S18);(Ribosomal_S6)	1	404	667	407	696	0	900	100	10	99
(Ribosomal_S2);(Ribosomal_S21)	1	26	26	36	36	75	236	100	8	72
(Ribosomal_S2);(Ribosomal_S9)	1	36	36	36	36	24	1158	97	6	100
(Ribosomal_S21);(Ribosomal_S9)	1	22	22	25	25	78	233	100	9	88
(G-alpha);(V-set)_(V-set)	1	28	28	28	28	43	547	100	0	100
(G-alpha);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	76	76	76	76	10	1330	100	7	100
(G-gamma);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	83	91	83	92	0	2071	100	20	100
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	17	29	17	29	31	2229	100	86	100
(G-alpha);(V-set)	1	57	57	57	57	5	844	100	2	100
(GP120);(ig)_(C2-set)	1	34	46	34	46	21	1037	100	39	100
(Ig_3)_(C1-set);(V-set)_(C1-set)	1	12	16	12	16	25	1887	100	75	100
(Ribosomal_L18p);(Ribosomal_L5)_(Ribosomal_L5_C)	1	12	12	16	16	71	229	100	25	75
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)	1	210	223	210	223	0	764	89	11	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	1	85	297	85	362	4	619	100	68	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	2	85	355	85	362	8	604	100	72	100
(AAA_16)_(ORC4_C);(AAA_16)_(ORC5_C)	1	24	24	24	24	10	2674	100	8	100
(AAA_16)_(ORC4_C);(ORC3_N)_(ORC3_ins)_(ORC_WH_C)	1	16	16	17	17	11	279	100	6	94
(AAA_16)_(ORC5_C);(ORC2)	1	23	23	23	23	21	883	100	4	100
(AAA_16)_(ORC5_C);(ORC3_N)_(ORC3_ins)_(ORC_WH_C)	1	18	18	18	18	11	1823	100	6	100
(BCAS2);(Myb_DNA-binding)_(Myb_DNA-binding)_(Myb_Cef)	1	11	11	11	11	25	1747	100	18	100
(Cwf_Cwc_15);(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EF G_IV)_(EFG_C)	1	12	12	12	12	43	566	100	8	100
(Cwf_Cwc_15);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-s nRNA_bdg)_(PRP8_domainIV)_(JAB)_(PROCT)	1	18	18	18	18	22	1596	100	17	100
(Cwf_Cwc_15);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )	1	15	15	15	15	3	1400	100	13	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(LSM)	1	34	34	34	34	34	490	100	18	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_bdg)_(P RP8_domainIV)_(JAB)_(PROCT)	1	17	17	17	17	34	5834	100	12	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	16	16	16	16	45	994	100	19	100
(G10);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_bd g)_(PRP8_domainIV)_(JAB)_(PROCT)	1	13	13	13	13	54	1461	100	15	100
(G10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	2	11	11	26	26	42	910	100	9	42
(Pro_isomerase);(SKIP_SNW)	1	10	10	10	10	3	968	100	10	100
(Pro_isomerase);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	11	11	11	11	42	732	100	9	100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	12	12	20	20	42	794	100	8	60
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	18	18	18	18	2	1245	100	17	100
(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40);(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(WD40)	1	10	10	10	10	42	930	100	0	100
(cwf21);(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_ bdg)_(PRP8_domainIV)_(JAB)_(PROCT)	1	14	14	14	14	0	1196	100	14	100
(LRR_9);(RRM_1)	1	24	24	24	24	24	577	100	12	100
(Mago_nashi);(RRM_1)	1	15	15	15	15	0	1187	100	67	100
(RRM_1);(SKIP_SNW)	1	17	17	17	17	21	1283	100	0	100
(Bud13);(RRM_1)	1	12	13	12	13	1	1106	100	8	100
(MMS1_N)_(CPSF_A);(PHF5)	1	16	16	16	16	27	608	100	12	100
(MMS1_N)_(CPSF_A);(SF3b1)	1	14	14	14	14	18	1491	100	14	100
(MMS1_N)_(CPSF_A);(SF3b10)	1	24	24	24	24	22	1503	100	21	100
(SF3b1);(SF3b10)	1	12	12	12	12	18	1072	100	17	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM_N)_(MCM_OB)_(MCM)_(MCM _lid)_(MCM6_C)	1	23	23	23	23	44	3222	100	30	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM2_N)_(MCM_N)_(MCM_OB)_( MCM)_(MCM_lid)	1	22	22	23	23	30	2846	100	50	96
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)_(MCM6_C);(MCM2_N)_(MCM_N)_( MCM_OB)_(MCM)_(MCM_lid)	1	27	27	27	27	33	2789	100	41	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_5);(RNA_pol_Rpb6)	1	10	18	10	18	80	2107	100	67	100
(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol _Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	17	38	17	38	80	265	100	68	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)	1	136	173	142	181	41	986	100	39	96
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)	1	71	71	72	72	42	1698	100	15	99
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)	2	69	69	72	72	42	301	100	16	96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	80	97	80	97	42	8076	100	11	100
(eIF-6);(NOG1_N)_(NOG1)_(NOGCT)	1	12	12	12	12	46	2319	100	17	100
(eIF-6);(Ribosomal_L14)	1	38	38	38	38	60	833	100	37	100
(eIF-6);(Ribosomal_L3)	1	22	22	22	22	61	253	100	32	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	1	177	190	177	190	0	768	87	9	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	131	144	132	145	5	465	83	12	99
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)	1	105	118	105	118	2	491	80	14	100
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)	1	201	214	203	216	4	663	88	9	99
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	1	200	213	200	213	3	509	88	9	100
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	2	151	164	200	213	2	276	85	10	76
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L22e)	1	10	10	10	10	46	883	100	10	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L3)	1	12	12	12	12	46	638	100	17	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L31e)	1	10	10	10	10	46	316	100	10	100
(NOG1_N)_(NOG1)_(NOGCT);(Ribosomal_L39)	1	10	10	10	10	46	919	100	10	100
(Peptidase_M24);(Ribosomal_L23eN)_(Ribosomal_L23)	1	20	20	20	20	26	504	100	30	100
(Ribosomal_L1);(Ribosomal_L36e)	1	10	10	20	20	25	336	100	10	50
(Ribosomal_L13);(Ribosomal_L18A)	1	200	213	200	213	12	691	88	9	100
(Ribosomal_L13);(Ribosomal_L35Ae)	1	156	159	167	180	2	239	91	11	93
(Ribosomal_L13e);(Ribosomal_L15e)	1	201	214	201	214	24	509	88	9	100
(Ribosomal_L13e);(Ribosomal_L18)	1	162	175	169	182	5	234	86	9	96
(Ribosomal_L13e);(Ribosomal_L27A)	1	202	215	202	215	2	1459	88	9	100
(Ribosomal_L13e);(Ribosomal_L29)	1	208	221	208	221	2	910	89	9	100
(Ribosomal_L13e);(Ribosomal_L36e)	1	198	211	198	211	4	642	88	9	100
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	108	108	115	115	31	220	96	6	94
(Ribosomal_L14);(Ribosomal_L24e)	1	212	286	212	286	0	525	91	8	100
(Ribosomal_L15e);(Ribosomal_L29)	1	203	216	203	216	7	355	88	10	100
(Ribosomal_L15e);(Ribosomal_L36e)	1	202	215	202	215	7	528	88	9	100
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	199	212	201	214	37	268	88	9	99
(Ribosomal_L15e);(Ribosomal_L7Ae)	1	186	259	186	259	2	943	90	8	100
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)	1	182	195	183	196	5	257	87	9	99
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	208	221	208	221	0	1115	89	10	100
(Ribosomal_L18A);(Ribosomal_L21e)	1	200	213	200	213	0	889	88	9	100
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)	1	205	218	205	218	22	474	89	10	100
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	97	110	99	112	35	242	78	14	98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)	1	215	288	215	288	0	1254	91	7	100
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)	1	158	171	158	171	1	299	85	11	100
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	201	214	201	214	0	598	88	9	100
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	193	206	193	206	0	856	88	9	100
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)	1	173	186	181	194	2	222	87	10	96
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)	1	21	34	23	36	8	342	0	0	91
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)	1	30	30	33	33	47	219	90	17	91
(Ribosomal_L27A);(Ribosomal_L36e)	1	160	173	168	181	4	240	86	9	95
(Ribosomal_L29);(Ribosomal_L37e)	1	55	55	66	66	28	216	100	4	83
(Ribosomal_L32e);(Ribosomal_L6e)	1	99	112	99	112	2	511	79	14	100
(Ribosomal_L35Ae);(Ribosomal_L6e)	1	112	125	112	125	2	858	81	14	100
(Ribosomal_L36e);(Ribosomal_L7Ae)	1	167	180	167	180	4	304	86	11	100
(Ribosomal_L37ae);(Ribosomal_L7Ae)	1	10	10	13	13	58	271	100	20	77
(Ribosomal_L37e);(Ribosomal_L39)	1	135	148	144	157	21	226	83	11	94
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)	1	185	198	188	201	39	240	87	10	98
(Ribosomal_L7Ae);(WD40)_(WD40)	1	21	21	21	21	33	467	100	5	100
(KH_2)_(Ribosomal_S3_C);(S10_plectin)	1	206	219	206	219	0	877	88	6	100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)	1	184	197	188	201	3	487	87	7	98
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)	1	224	237	224	237	2	467	89	10	100
(Ribosom_S12_S23);(Ribosomal_S30)	1	173	186	174	187	10	446	86	9	99
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)	1	77	77	93	93	29	355	99	0	83
(Ribosomal_L7Ae);(S4)	1	18	18	18	18	61	256	100	6	100
(Ribosomal_S11);(Ribosomal_S26e)	1	200	213	200	213	2	1109	88	7	100
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)	1	23	23	25	25	34	256	100	13	92
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)	1	66	66	80	80	2	234	98	12	82
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)	1	63	65	76	78	66	209	78	11	83
(Ribosomal_S14);(S10_plectin)	1	193	206	196	209	0	294	87	6	98
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)	1	235	248	235	248	3	718	90	8	100
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	1	133	133	133	133	1	1261	99	8	100
(Ribosomal_S17e);(Ribosomal_S3Ae)	1	66	66	71	71	4	232	100	6	93
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	195	208	195	208	10	529	88	8	100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)	1	135	135	135	135	0	1490	99	8	100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	132	132	132	132	3	529	99	8	100
(Ribosomal_S21e);(Ribosomal_S27e)	1	84	97	85	98	36	427	75	9	99
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)	1	215	228	215	228	2	1317	89	8	100
(Ribosomal_S21e);(Ribosomal_S8)	1	184	197	186	199	3	266	87	8	99
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	1	227	240	227	240	0	536	90	9	100
(Ribosomal_S24e);(S4)	1	107	120	117	130	30	227	80	11	91
(Ribosomal_S25);(Ribosomal_S7)	1	213	226	213	226	2	600	88	8	100
(Ribosomal_S26e);(Ribosomal_S28e)	1	11	11	18	18	43	225	91	27	61
(Ribosomal_S26e);(Ribosomal_S3Ae)	1	136	149	148	161	6	265	83	6	92
(Ribosomal_S27e);(Ribosomal_S7e)	1	79	79	88	88	2	332	97	6	90
(Ribosomal_S28e);(Ribosomal_S7)	1	255	268	255	268	0	1107	90	9	100
(Ribosomal_S30);(S4)	1	171	184	171	184	1	506	86	10	100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)	1	188	201	189	202	10	300	88	7	99
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)	1	192	205	192	205	0	369	88	9	100
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)	1	105	105	109	109	5	585	98	7	96
(KH_8)_(KH_1);(Ribosomal_S11)	1	17	17	17	17	50	930	100	29	100
(Ribosomal_S17e);(Ribosomal_S2)	1	78	91	78	91	2	956	73	8	100
(Ribosomal_S2);(Ribosomal_S21e)	1	79	92	79	92	0	1506	73	9	100
(Brix);(MMR_HSR1)_(AARP2CN)_(RIBIOP_C)	1	12	12	12	12	49	261	100	0	100
(Brix);(Mpp10)	1	25	25	27	27	32	1362	100	4	93
(Brix);(Nop14)	1	13	13	13	13	24	993	100	0	100
(Brix);(Ribosomal_S9)	1	22	22	22	22	58	312	100	5	100
(Brix);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)	1	16	16	16	16	55	338	100	6	100
(CBF);(EMG1)	1	13	13	15	15	67	386	100	0	87
(CBF);(WD40)_(Utp12)	1	14	14	14	14	67	892	100	0	100
(CBF);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)	1	15	15	15	15	30	608	100	0	100
(DUF1726)_(Helicase_RecD)_(GNAT_acetyltr_2)_(tRNA_bind_2);(P ALB2_WD40)_(NUC153)	1	12	12	12	12	43	525	100	0	100
(EMG1);(Nop14)	1	22	22	22	22	24	1159	100	5	100
(EMG1);(Ribosomal_S7)	1	21	21	21	21	69	384	100	5	100
(Fcf1);(Fibrillarin)	1	24	24	24	24	53	670	100	4	100
(Fcf1);(Ribosomal_S8)	1	23	23	23	23	52	364	100	4	100
(Fcf1);(S4)	1	27	27	27	27	52	847	100	4	100
(Fcf1);(Sas10_Utp3)_(Sas10)	1	24	24	24	24	30	679	100	4	100
(Fcf1);(WD40)_(WD40)_(WD40)_(Sof1)	1	20	20	20	20	49	564	100	5	100
(Fcf1);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)_(WD40)_(WD40)_(WD40)_(Utp12)	1	10	10	10	10	53	258	100	10	100
(Fcf2);(Fibrillarin)	1	23	23	23	23	30	1460	100	4	100
(Fcf2);(MMR_HSR1)_(AARP2CN)_(RIBIOP_C)	1	12	12	12	12	31	1176	100	8	100
(Fcf2);(Sas10_Utp3)_(Sas10)	1	16	16	16	16	30	278	100	6	100
(Fcf2);(U3_assoc_6)_(TPR_14)	1	15	15	15	15	74	989	100	0	100
(Fibrillarin);(NOP5NT)_(Nop)	1	26	26	26	26	39	1319	100	4	100
(Fibrillarin);(Ribosomal_L7Ae)	1	22	22	27	30	61	456	100	5	81
(Fibrillarin);(Sas10_Utp3)_(Sas10)	1	23	23	23	23	30	1094	100	4	100
(Fibrillarin);(Utp11)	1	22	22	22	22	29	998	100	5	100
(Ge1_WD40)_(WD40)_(BING4CT);(U3_assoc_6)_(TPR_14)	1	14	14	14	14	74	388	100	0	100
(KH_8);(Ribosomal_S11)	1	18	18	21	21	69	860	100	6	86
(KH_8);(Ribosomal_S3Ae)	1	11	11	11	11	69	406	100	9	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Mpp10)	1	24	24	24	24	32	1827	100	4	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Ribosom_S12_S23)	1	27	27	27	27	49	1252	100	4	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(RTC)_(RTC_insert)_(RTC)	1	28	28	28	28	37	2704	100	4	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Sas10_Utp3)_(Sas10)	1	17	17	17	17	31	713	100	6	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Utp11)	1	14	14	14	14	29	2451	100	7	100
(Mpp10);(Nop14)	1	10	10	10	10	32	615	100	0	100
(Mpp10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	16	16	23	23	32	1586	100	6	70
(Mpp10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(Utp12)	2	15	15	23	23	32	1011	100	7	65
(Nop14);(Ribosom_S12_S23)	1	19	19	19	19	24	625	100	5	100
(Nop14);(RTC)_(RTC_insert)_(RTC)	1	17	17	17	17	24	763	100	6	100
(NOP5NT)_(Nop);(Ribosomal_L7Ae)	1	26	26	26	26	39	502	100	4	100
(NOP5NT)_(Nop);(U3_assoc_6)_(TPR_14)	1	23	23	23	23	24	768	100	4	100
(NOP5NT)_(Nop);(Utp11)	1	18	18	18	18	29	278	100	6	100
(NOP5NT)_(Nop);(Utp14)	1	21	21	21	21	28	592	100	5	100
(NOP5NT)_(Nop);(WD40)_(WD40)	1	19	19	19	19	33	415	100	5	100
(NOP5NT)_(Nop);(WD40)_(WD40)_(WD40)_(Sof1)	1	23	23	23	23	49	902	100	4	100
(Nrap)_(Nrap_D2)_(Nrap_D3)_(Nrap_D4)_(Nrap_D5)_(Nrap_D6);(Ri bosomal_S3Ae)	1	18	18	18	18	27	1081	100	0	100
(Nrap)_(Nrap_D2)_(Nrap_D3)_(Nrap_D4)_(Nrap_D5)_(Nrap_D6);(RR M_Rrp7)_(RRP7)	1	23	23	23	23	25	2522	100	4	100
(PALB2_WD40)_(NUC153);(Ribosomal_S6e)	1	14	14	14	14	43	686	100	0	100
(PALB2_WD40)_(NUC153);(Ribosomal_S8e)	1	14	14	14	14	43	759	100	0	100
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)	1	15	15	15	15	34	1107	100	47	100
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)	2	12	12	15	15	23	759	100	50	80
(PIN_4)_(Rrp44_CSD1)_(OB_Dis3)_(RNB)_(Rrp44_S1);(RNase_PH)_( RNase_PH_C)	3	10	10	15	15	34	1017	100	40	67
(Ribosomal_L7Ae);(Utp11)	1	17	17	17	17	29	592	100	6	100
(Ribosomal_S13);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)	1	15	15	15	15	30	491	100	7	100
(Ribosomal_S28e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	22	22	22	22	44	607	100	5	100
(Ribosomal_S7);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)	1	20	20	20	20	30	509	100	5	100
(Ribosomal_S7);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	14	14	14	14	55	234	100	7	100
(Ribosomal_S7e);(Utp14)	1	14	14	14	14	30	308	100	7	100
(Ribosomal_S7e);(WD40)_(WD40)_(WD40)_(Sof1)	1	19	19	19	19	49	417	100	5	100
(Ribosomal_S8);(WD40)_(WD40)_(WD40)_(Sof1)	1	19	19	19	19	49	441	100	5	100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	21	21	21	21	55	512	100	5	100
(RNase_PH);(RNase_PH)_(RNase_PH_C)	1	17	17	17	17	3	1604	100	53	100
(RNase_PH);(RNase_PH)_(RNase_PH_C)	2	17	17	17	17	18	1162	100	53	100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)	1	17	17	17	17	28	789	100	53	100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)	2	17	17	17	17	26	1196	100	47	100
(RTC)_(RTC_insert)_(RTC);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_ (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	21	21	21	21	37	473	100	5	100
(S4);(Sas10_Utp3)_(Sas10)	1	22	22	22	22	30	432	100	5	100
(U3_assoc_6)_(TPR_14);(Utp14)	1	21	21	21	21	24	1182	100	5	100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)	1	20	20	20	20	2	565	100	5	100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)_(WD40)_(Sof1)	1	20	20	20	20	24	383	100	5	100
(U3_snoRNA_assoc);(Utp11)	1	21	21	21	21	23	600	100	5	100
(U3_snoRNA_assoc);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	16	16	16	16	88	1233	100	0	100
(Utp14);(WD40)_(WD40)_(WD40)_(Sof1)	1	21	21	21	21	28	2311	100	5	100
(Ribosomal_S24e);(Sas10_Utp3)	1	11	11	11	11	28	424	100	0	100
(S4);(Sas10_Utp3)	1	11	11	11	11	28	1429	100	0	100
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C)	1	10	10	10	10	23	519	90	0	100
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(40S_S4_C)	1	10	10	10	10	36	335	90	0	100
(MlaD);(MlaE)	1	12	12	13	13	59	562	100	33	92
(MlaD);(MlaE)	2	11	11	13	13	59	956	100	36	85
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	142	155	149	162	3	260	84	5	95
(Ribosomal_L21e);(Ribosomal_L29e)	1	186	199	186	199	0	478	87	9	100
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	52	52	55	55	82	491	100	2	95
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)	1	93	106	93	106	32	660	77	8	100
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)	1	45	45	61	61	57	228	98	13	74
(Ribosomal_L31);(Ribosomal_S13)	1	134	267	157	300	0	403	100	13	85
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)	1	32	45	32	45	56	266	47	4	100
(ABC_tran)_(BCA_ABC_TP_C);(LptF_LptG)	1	11	11	11	11	11	984	100	64	100
(IL12p40_C)_(fn3);(IL23)	1	12	12	12	12	13	957	100	100	100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	1	119	146	134	163	5	504	100	67	89
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	2	118	145	134	163	12	575	100	68	88
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	3	108	136	134	163	5	545	100	71	81
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab)_(T3SS_ATPase_C)	1	152	181	152	182	18	2083	100	61	100
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)	1	91	91	91	91	28	644	99	11	100
(DNA_RNApol_7kD);(RNA_pol_A_bac)	1	112	221	112	229	0	584	100	60	100
(DNA_RNApol_7kD);(RNA_pol_N)	1	22	26	48	98	21	199	100	69	46
(RNA_pol_A_bac);(RNA_pol_L_2)	1	111	222	112	229	4	2031	100	68	99
(RNA_pol_A_bac);(RNA_pol_N)	1	112	221	112	229	20	1112	100	74	100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	48	127	52	165	42	361	100	53	92
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	67	172	67	180	42	1683	99	73	100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	66	179	66	179	35	960	99	48	100
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	73	184	75	188	21	454	99	65	97
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	66	179	66	179	45	1538	99	72	100
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	75	188	75	188	25	1334	99	56	100
(RNA_POL_M_15KD)_(TFIIS_C);(TFIIF_alpha)	1	10	10	13	13	19	252	100	0	77
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	67	180	67	180	52	9151	99	58	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)	1	17	60	36	87	51	232	98	50	47
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)	1	67	180	67	180	5	2118	99	72	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	66	177	67	180	4	1903	99	71	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	66	179	67	180	35	1503	99	71	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	59	110	60	111	5	590	99	49	98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)	1	22	23	22	23	33	2193	100	17	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)	1	21	67	35	86	51	289	99	45	60
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(SHS2_Rpb7-N)_(S1)	1	12	12	24	70	24	283	100	33	50
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	23	24	23	24	33	1705	100	12	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_alpha)	1	19	19	19	19	17	1175	100	5	100
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)	1	73	125	73	127	1	2027	99	48	100
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)	1	68	119	69	123	4	433	98	45	99
(TBP)_(TBP);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	12	13	12	13	39	419	100	31	100
(TFIIF_alpha);(TFIIF_beta_N)_(TFIIF_beta)	1	11	11	11	11	87	1960	100	9	100
(Actin);(P34-Arc)	1	10	26	10	26	45	1511	100	81	100
(ARPC4);(P16-Arc)	1	11	27	11	27	25	837	100	78	100
(F_actin_cap_B);(F-actin_cap_A)	1	25	29	25	29	10	3549	100	76	100
(Actin);(Gelsolin)	1	12	41	13	42	72	1189	100	100	92
(Actin);(WH2)	1	10	12	10	12	27	982	100	100	100
(Activin_recp);(TGF_beta)	1	13	17	16	21	12	377	88	88	81
(Activin_recp);(TGF_beta)	2	13	17	16	21	0	746	100	94	81
(ETF);(ETF)_(ETF_alpha)	1	12	18	12	18	9	3192	100	94	100
(C1-set);(MHC_I)_(C1-set)_(MHC_I_C)	1	11	17	11	17	21	1231	100	82	100
(Alba);(Rpp20)	1	10	10	10	10	7	805	100	30	100
(RNase_P_p30);(RNase_P_Rpp14)	1	11	11	11	11	10	951	100	18	100
(RNase_P_p30);(RNase_P_Rpp14)	2	11	11	11	11	10	671	100	18	100
(Alpha_E1_glycop);(Alpha_E2_glycop)	1	14	16	15	17	56	808	100	25	93
(Alpha_E1_glycop);(Alpha_E2_glycop)_(Alpha_E1_glycop)	1	19	19	19	19	15	2453	100	0	100
(Alpha_E1_glycop);(Alpha_E2_glycop)_(Alpha_E1_glycop)	2	15	15	19	19	15	529	100	0	79
(ANAPC2);(ANAPC4_WD40)_(ANAPC4)	1	10	10	10	10	79	540	100	40	100
(ANAPC2);(zf-ANAPC11)	1	11	11	11	11	79	1692	100	36	100
(CDC45);(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)	1	17	17	17	17	22	768	100	47	100
(CDC45);(MCM2_N)_(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)	1	16	16	16	16	22	534	100	50	100
(CDC45);(Sld5)	1	15	15	16	16	22	265	100	47	94
(CDC45);(Sld5)_(SLD5_C)	1	13	13	13	13	25	850	100	31	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)	1	17	17	17	17	27	574	100	47	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)	2	17	17	17	17	15	433	100	47	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(Sld5)	3	13	13	17	17	15	362	100	46	76
(Sld5);(Sld5)_(SLD5_C)	1	15	16	15	16	6	1355	100	44	100
(Sld5);(Sld5)_(SLD5_C)	2	13	14	15	16	18	1973	100	36	87
(Skp1_POZ);(ubiquitin)	1	35	76	35	77	2	1089	100	80	100
(CSN8_PSD8_EIF3K);(PCI)_(Rpn3_C)	1	51	51	51	51	10	1939	100	29	100
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)	1	31	31	32	32	66	625	100	19	97
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_I D_OB)_(AAA)_(AAA_lid_3)	1	15	15	15	15	29	2168	100	20	100
(JAB)_(MitMem_reg);(VWA_2)	1	44	44	44	44	4	609	100	20	100
(PCI)_(Rpn3_C);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEA T_2)_(RPN2_C)	1	31	31	32	32	72	594	100	19	97
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_(RPN6_C_he lix)	1	12	12	13	13	43	617	100	33	92
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)	1	58	58	58	58	37	1413	100	28	100
(Thrombin_light);(Trypsin)	1	94	366	94	428	6	1173	100	99	100
(Thrombin_light);(Trypsin)	2	21	44	94	428	75	264	2	14	22
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)	1	12	12	22	22	37	312	100	33	55
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)	1	29	29	29	29	31	321	100	38	100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	1	30	30	30	30	31	1614	100	37	100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	2	18	18	30	30	31	257	100	39	60
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(ZapB)_(Prot_ATP_ID_OB)_( AAA)_(AAA_lid_3)	1	31	31	31	31	37	2701	100	35	100
(RPN6_N)_(PCI)_(RPN6_C_helix);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_ (AAA_lid_3)	1	11	11	19	19	43	405	100	36	58
(RPN7)_(PCI);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	12	12	22	22	37	850	100	33	55
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(P C_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)	1	13	13	13	13	74	685	100	8	100
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome _A_N)_(Proteasome)	1	11	11	11	11	60	297	100	27	100
(Homeodomain)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome _A_N)_(Proteasome)	2	11	11	11	11	52	644	100	27	100
(ubiquitin);(UCH)	1	24	32	27	36	9	1705	100	100	89
(RRM_1);(Torus)_(RRM_1)	1	17	17	17	17	21	1805	100	6	100
(ArfA);(PCRF)_(RF-1)	1	10	10	10	10	42	1140	100	40	100
(MIF4G)_(MIF4G_like)_(MIF4G_like_2);(RRM_1)	1	11	13	11	13	13	1470	100	77	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	225	295	226	297	9	1531	100	51	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	44	66	44	67	47	2772	100	48	100
(Synaptobrevin);(Syntaxin)_(SNARE)	1	26	29	26	30	0	1402	100	72	100
(ATP-synt);(ATP-synt_Eps)	1	103	114	103	114	10	996	100	75	100
(ATP-synt_DE_N);(ATP-synt_Eps)	1	82	83	82	83	12	1037	100	70	100
(Mt_ATP-synt_B);(Mt_ATP-synt_D)	1	43	43	44	44	3	1393	100	35	98
(ATP_synt_H);(V_ATPase_I)	1	21	21	21	21	22	1953	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	1	15	15	15	15	51	1362	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	2	15	15	15	15	51	922	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_D)	1	10	10	10	10	26	573	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(vATP-synt_E)	1	14	14	14	14	34	847	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)	1	22	25	23	29	26	577	100	36	96
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)	2	22	25	23	29	26	481	100	32	96
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)	3	22	25	23	29	26	335	100	36	96
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)	1	17	17	19	19	24	447	100	0	89
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)	2	17	17	19	19	24	956	100	0	89
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)	3	17	17	19	19	24	665	100	0	89
(ATP-synt_D);(ATP-synt_F)	1	41	45	42	48	10	1490	100	31	98
(ATP-synt_S1);(vATP-synt_AC39)	1	17	17	19	19	24	421	100	0	89
(V_ATPase_I);(V-ATPase_C)	1	13	13	18	18	36	436	100	0	72
(V_ATPase_I);(V-ATPase_H_N)_(V-ATPase_H_C)	1	12	12	12	12	23	989	100	0	100
(V-ATPase_C);(vATP-synt_E)	1	12	12	19	20	33	381	100	0	63
(V-ATPase_G);(vATP-synt_E)	1	28	29	28	29	31	1622	100	7	100
(ATP-synt_S1);(Renin_r)	1	13	13	13	13	83	624	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_D)	1	19	22	20	26	26	650	100	45	95
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_D)	2	19	22	20	26	26	453	100	45	95
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_D)	3	18	21	20	26	26	425	100	38	90
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(V-ATPase_G)	1	10	10	10	10	64	228	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(vATP-synt_E)	1	19	19	20	20	15	1503	95	26	95
(ATP_synth_reg);(ATP-synt_A)	1	18	18	24	24	62	390	100	28	75
(ATP-synt_8);(ATP-synt_A)	1	25	25	25	25	4	927	100	24	100
(ATP-synt_8);(Mit_proteolip)	1	10	10	20	20	4	599	100	50	50
(ATP-synt_A);(Mit_proteolip)	1	10	10	20	20	62	580	100	50	50
(ATP-synt_A);(WRW)	1	20	20	25	25	32	691	100	25	80
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(IATP)	1	11	11	20	20	25	425	100	36	55
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(IATP)	1	23	23	23	23	16	684	100	17	100
(ATP-synt_E);(ATP-synt_G)	1	20	20	20	20	88	646	100	30	100
(ATP-synt_E);(Mt_ATP-synt_B)	1	10	10	20	20	3	258	100	50	50
(ATP-synt_F6);(Mt_ATP-synt_B)	1	17	17	25	25	4	1255	100	41	68
(ATP-synt_F6);(Mt_ATP-synt_D)	1	14	14	23	23	87	404	100	50	61
(ATP-synt_G);(Mt_ATP-synt_B)	1	19	19	20	20	3	456	100	26	95
(ATP-synt_G);(WRW)	1	10	10	20	20	32	500	100	50	50
(Mt_ATP-synt_B);(WRW)	1	20	20	25	25	1	557	100	30	80
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)	1	56	67	61	72	5	1263	100	42	92
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_DE_N )_(ATP-synt_DE)	1	15	16	32	33	5	318	88	12	47
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_DE_N )_(ATP-synt_DE)	1	14	14	32	33	38	317	100	14	44
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_DE_N )_(ATP-synt_DE)	2	11	11	32	33	38	450	100	18	34
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	1	22	23	30	31	5	248	96	4	73
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	2	21	22	30	31	17	250	95	5	70
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)	1	16	26	21	31	21	677	100	85	76
(ATP-grasp_2)_(Ligase_CoA);(CoA_binding)_(Ligase_CoA)	1	10	28	10	30	10	1946	100	100	100
(Bac_export_1);(Bac_export_3)	1	15	15	15	15	18	1046	100	40	100
(Bac_export_1);(FliP)	1	15	15	15	15	18	1945	100	40	100
(Bac_export_1);(FliP)	2	15	15	15	15	18	2120	100	40	100
(Bac_export_3);(FliP)	1	15	15	15	15	22	1179	100	40	100
(Fer4_7);(PsaA_PsaB)	1	27	30	27	30	0	803	100	40	100
(Fer4_7);(PsaA_PsaB)	2	27	30	27	30	3	400	100	37	100
(Bcl-2);(Bclx_interact)	1	17	27	20	31	0	993	100	100	85
(Bclx_interact);(BH4)_(Bcl-2)	1	13	14	13	14	10	1006	100	100	100
(Ribosomal_L13);(Ribosomal_L14e)	1	26	26	26	26	4	926	100	12	100
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	78	78	79	79	87	500	99	1	99
(Ribosomal_L32e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	68	68	71	71	87	227	99	1	96
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	83	83	83	83	41	870	99	1	100
(Ribosomal_L4)_(Ribos_L4_asso_C);(Ribosomal_L6e_N)_(Ribosoma l_L6e)	1	76	76	77	77	44	352	99	1	99
(eIF-1a);(Ribosom_S12_S23)	1	33	33	33	33	8	388	97	18	100
(eIF-3c_N)_(PCI);(Ribosomal_S27e)	1	13	13	14	14	28	572	100	15	93
(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C);(S1)_(EIF_2_alpha)	1	17	17	17	17	25	688	100	24	100
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	1	14	17	37	40	10	575	6	6	38
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)	1	18	24	34	41	9	556	0	0	53
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)	2	14	20	34	41	9	763	100	15	41
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)	3	10	15	34	41	9	385	100	20	29
(E1_dh);(Transket_pyr)_(Transketolase_C)	1	10	42	10	42	25	1733	100	100	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	2	10	42	10	42	25	1584	100	100	100
(Pescadillo_N)_(BRCT_2);(Ribosomal_L30_N)_(Ribosomal_L30)	1	13	13	13	13	89	1275	100	15	100
(L31);(Ribosomal_L30)	1	10	10	10	10	22	915	90	10	100
(Mitoc_mL59);(Ribosomal_L33)	1	10	10	10	10	26	657	90	10	100
(Ribosomal_L23);(Ribosomal_L39)	1	11	71	11	71	34	276	100	1	100
(Nop);(Ribosomal_L7Ae)	1	12	15	12	15	24	607	100	73	100
(TFIIA);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	23	24	23	24	3	2241	100	25	100
(LON_substr_bdg)_(Yippee-Mis18);(MMS1_N)_(CPSF_A)	1	10	16	10	16	61	2336	100	94	100
(DIM1);(Nop)_(Prp31_C)	1	10	10	10	10	25	414	100	50	100
(Nop)_(Prp31_C);(Ribosomal_L7Ae)	1	10	10	10	10	25	502	100	50	100
(Inhibitor_I9);(Peptidase_S8)	1	13	28	14	29	10	1194	100	100	93
(C1-set);(MHC_I_3)_(C1-set)	1	43	139	43	142	11	1243	100	99	100
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	1	10	15	10	15	48	365	93	7	100
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	2	10	15	10	15	48	484	93	7	100
(DUF5089);(Synaptobrevin)	1	11	14	15	19	10	319	100	93	73
(DUF5089);(Syntaxin)_(SNARE)	1	18	21	19	23	6	1501	100	95	95
(G-alpha);(HRM)_(7tm_2)	1	36	36	36	36	24	1059	100	0	100
(HRM)_(7tm_2);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	18	18	22	22	26	251	100	0	82
(Calici_coat);(CRPV_capsid)	1	29	30	29	30	7	4513	100	23	100
(HAV_VP);(Rhv)	1	14	15	14	15	5	1257	100	13	100
(HAV_VP);(Rhv)	2	11	11	14	15	7	3398	100	0	79
(RbpA);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	16	21	16	21	81	1287	100	38	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)	1	20	53	20	53	35	2594	100	45	100
(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol _Rpb2_6)_(RNA_pol_Rpb2_7);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma 70_r3)_(Sigma70_r4)	1	10	25	11	26	81	2125	100	76	91
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	46	100	46	100	30	1837	100	82	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	2	39	92	46	100	30	273	100	86	85
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (RNA_pol_Rpb6)	1	28	68	37	93	10	212	100	74	76
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	1	145	199	145	199	8	2619	100	99	100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	2	21	25	145	199	56	381	12	12	14
(CCDC23);(Vasohibin)	1	17	23	17	23	3	1216	100	96	100
(Me-amine-dh_H);(Me-amine-dh_L)	1	15	66	15	69	12	1513	100	95	100
(Me-amine-dh_H);(Me-amine-dh_L)	2	15	66	15	69	12	1149	94	95	100
(CDC50);(PhoLip_ATPase_N)_(E1-E2_ATPase)_(Cation_ATPase)_(Ph oLip_ATPase_C)	1	15	15	15	15	37	3850	100	7	100
(F-box-like);(Skp1_POZ)_(Skp1)	1	13	15	13	15	4	1243	100	93	100
(Cyclin_N)_(Cyclin_C);(Pkinase)	1	37	150	37	167	3	1564	99	92	100
(CENP-S);(CENP-X)	1	13	16	13	16	10	2300	100	100	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom _S12_S23)	1	37	41	39	43	4	341	100	0	95
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L11_N)_(Ribosomal_L11)	1	10	10	15	15	22	247	100	0	67
(Chloroa_b-bind);(PSI_PsaF)	1	17	17	22	26	42	348	100	12	77
(Fer4_21);(PsaA_PsaB)	1	21	22	21	25	74	402	100	14	100
(Fer4_21);(PsaA_PsaB)	2	21	25	21	25	0	834	100	24	100
(Fer4_21);(PsaD)	1	21	21	21	25	21	1436	100	10	100
(Fer4_21);(PSI_PsaE)	1	21	25	21	25	53	482	100	24	100
(PsaA_PsaB);(PsaD)	1	48	51	48	55	5	789	100	27	100
(PsaA_PsaB);(PsaD)	2	48	51	48	55	5	681	100	29	100
(PsaA_PsaB);(PsaM)	1	30	33	30	33	34	954	100	33	100
(PsaA_PsaB);(PSI_8)	1	44	51	44	51	0	733	100	31	100
(PsaA_PsaB);(PSI_PsaE)	1	44	48	47	54	0	409	100	27	94
(PsaA_PsaB);(PSI_PsaE)	2	42	46	47	54	45	286	100	26	89
(PsaA_PsaB);(PSI_PsaF)	1	44	48	44	51	21	929	100	29	100
(PsaA_PsaB);(PSI_PsaF)	2	44	48	44	51	21	1061	100	31	100
(PsaA_PsaB);(PSI_PsaJ)	1	41	45	41	45	27	347	100	31	100
(PsaD);(PsaL)	1	35	38	36	43	5	464	100	32	97
(PsaL);(PSI_8)	1	30	33	32	35	0	249	100	30	94
(PsaL);(PSI_8)	2	13	16	32	35	41	252	94	50	41
(PsaM);(PSI_8)	1	22	25	24	27	0	226	100	40	92
(PSI_PsaF);(PSI_PsaJ)	1	44	48	44	51	9	707	100	29	100
(Chloroa_b-bind);(PSI_PSAK)	1	13	13	15	19	30	416	100	8	87
(Fer4_7);(PsaD)	1	27	30	27	30	2	1388	100	40	100
(Fer4_7);(PSI_PsaE)	1	27	30	27	30	40	534	100	33	100
(PsaD);(PSI_PsaH)	1	10	10	11	15	36	547	100	10	91
(PsaL);(PSI_PsaH)	1	13	13	13	17	22	1653	100	8	100
(PSI_8);(PSI_PsaH)	1	13	13	13	17	7	318	100	8	100
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)	1	30	53	30	73	7	733	100	43	100
(Cytochrom_B559);(Photo_RC)	1	30	48	30	73	0	463	100	42	100
(Cytochrom_B559);(PsbJ)	1	25	48	25	68	7	377	100	35	100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	1	29	48	29	72	62	1316	100	40	100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	2	28	49	29	72	62	306	100	45	97
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)	1	24	48	24	67	0	372	100	33	100
(MSP);(Photo_RC)	1	26	42	26	69	35	701	100	29	100
(MSP);(Photo_RC)	2	25	44	26	69	36	666	100	34	96
(MSP);(PSII)	1	26	42	26	69	35	1301	100	31	100
(MSP);(PSII)	2	23	42	26	69	36	783	100	31	88
(MSP);(PSII)	3	23	41	26	69	39	398	83	7	88
(Photo_RC);(PsbH)	1	28	47	28	71	55	269	100	36	100
(Photo_RC);(PsbI)	1	28	49	28	71	12	862	100	27	100
(Photo_RC);(PsbL)	1	28	47	28	71	68	403	100	30	100
(Photo_RC);(PsbL)	2	25	46	28	71	76	256	100	41	89
(Photo_RC);(PsbT)	1	28	49	28	71	40	511	100	39	100
(Photo_RC);(PsbT)	2	24	42	28	71	40	219	100	31	86
(Photo_RC);(PsbW)	1	11	11	11	11	26	476	100	9	100
(Photo_RC);(PsbX)	1	27	45	27	70	3	588	100	38	100
(Photo_RC);(PSII)	1	30	49	30	73	9	2884	100	49	100
(Photo_RC);(PSII)	2	29	53	30	73	16	793	100	53	97
(PsbH);(PsbX)	1	26	54	26	69	3	300	100	33	100
(PsbH);(PSII)	1	28	57	28	71	55	1881	100	40	100
(PsbI);(PsbW)	1	11	11	11	11	9	796	100	0	100
(PsbI);(PSII)	1	28	44	28	71	64	426	100	30	100
(PsbK);(PSII)	1	29	47	29	72	17	795	100	34	100
(PsbK);(PSII_Ycf12)	1	19	37	19	62	4	495	100	30	100
(PsbK);(Ycf9)	1	26	46	26	69	6	266	100	26	100
(PsbL);(PsbM)	1	27	57	27	70	4	811	100	40	100
(PsbL);(PsbT)	1	28	58	28	71	12	591	100	41	100
(PsbL);(PSII)	1	28	52	28	71	12	603	100	38	100
(PsbM);(PsbT)	1	17	37	21	64	4	243	100	11	81
(PsbW);(PSII)	1	11	11	11	11	26	790	100	9	100
(PSII);(Ycf9)	1	27	44	27	70	6	424	100	25	100
(PSII_Ycf12);(Ycf9)	1	19	37	19	62	0	394	100	27	100
(Cytochrom_C550);(Photo_RC)	1	19	36	19	62	54	567	100	56	100
(Cytochrom_C550);(Photo_RC)	2	10	25	19	62	55	211	100	48	53
(Cytochrom_C550);(PsbU)	1	18	37	18	61	31	640	100	41	100
(Cytochrom_C550);(PSII)	1	20	36	20	63	35	921	100	53	100
(MSP);(PsbU)	1	18	36	18	61	31	518	100	31	100
(PsbU);(PSII)	1	18	33	18	61	31	428	100	33	100
(PsbU);(PSII)	2	18	35	18	61	31	472	100	40	100
(Ion_trans)_(Ion_trans)_(Ion_trans)_(Ion_trans)_(GPHH)_(Ca_c han_IQ);(VWA_N)_(VWA_3)_(VGCC_alpha2)	1	12	12	12	12	70	1822	100	25	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_ Rpb2_6)_(RNA_pol_Rpb2_7)	1	34	60	35	62	50	7920	100	67	97
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_ (RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	61	78	68	85	26	235	100	8	90
(CoV_NSP7);(CoV_NSP8)	1	22	24	28	32	11	1301	100	42	79
(CoV_NSP7);(CoV_RPol_N)_(RdRP_1)	1	20	20	21	21	11	776	100	25	95
(CoV_NSP8);(CoV_RPol_N)_(RdRP_1)	1	21	21	22	22	13	2441	100	24	95
(CoV_peptidase);(ubiquitin)	1	13	16	13	16	10	1006	100	94	100
(Cpn10);(Cpn60_TCP1)	1	14	20	15	21	11	414	100	80	93
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)	1	28	53	37	62	84	929	100	40	76
(Rhv);(VP4_2)	1	19	25	24	36	13	561	100	60	79
(Rhv);(VP4_2)	2	19	22	24	36	22	242	100	45	79
(Rhv);(VP4_2)	3	10	12	24	36	16	677	92	42	42
(Csm4_C);(RAMPs)	1	10	10	10	10	21	1537	100	0	100
(Helicase_C_3)_(ResIII)_(ERCC3_RAD25_C);(Tfb5)	1	13	13	13	13	26	492	100	15	100
(Med11);(Med17)	1	10	10	12	12	8	1175	100	30	83
(Med11);(Med22)	1	11	11	11	11	5	1557	100	36	100
(Med17);(Med22)	1	11	11	12	12	8	1140	100	27	92
(Med18);(Med20)	1	13	13	13	13	5	1394	100	38	100
(Tfb2)_(Tfb2_C);(Tfb5)	1	14	14	14	14	24	995	100	14	100
(CytoC_RC);(Photo_RC)	1	14	32	14	44	21	1655	100	91	100
(CytoC_RC);(Photo_RC)	2	14	32	14	44	21	2502	100	94	100
(Photo_RC);(PRCH)_(PRC)	1	21	130	21	145	35	1609	100	95	100
(Photo_RC);(PRCH)_(PRC)	2	21	130	21	145	35	2675	100	97	100
(ECR1_N)_(EXOSC1);(RNase_PH)	1	14	14	14	14	18	1019	100	64	100
(ECR1_N)_(EXOSC1);(RNase_PH)_(RNase_PH_C)	1	11	13	11	13	14	762	100	85	100
(ECR1_N)_(EXOSC1);(Rrp40_N)_(KH_6)	1	13	13	13	13	28	444	100	69	100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	12	12	12	12	23	1423	100	67	100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	2	12	12	12	12	34	1180	100	67	100
(TBP)_(TBP);(TFIIA)	1	11	12	11	12	50	343	100	25	100
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Nop10p)	1	12	17	12	17	10	1351	100	100	100
(DNA_RNApol_7kD);(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)	1	14	17	14	17	25	582	100	53	100
(RNA_pol_3_Rpc31);(RNA_pol_Rpc34)	1	14	14	24	24	66	539	100	57	58
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_L_2)	1	15	18	15	18	23	1799	100	56	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_N)	1	14	17	14	17	28	998	100	53	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb2_1)_(RN A_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb 2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	10	10	10	10	30	1755	100	60	100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	65	72	65	72	22	925	100	76	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_R pb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	10	10	10	10	38	8318	100	60	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_Rpb5_C)	1	60	64	60	64	28	2411	100	67	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	60	64	60	64	28	1671	100	67	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	25	25	25	25	44	1235	100	60	100
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	27	27	27	27	30	1723	100	63	100
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	25	25	25	25	44	426	100	60	100
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7)	1	23	26	23	26	23	957	100	62	100
(HTH_9)_(RNA_pol_Rpc82)_(TFIIE_alpha);(RNA_pol_3_Rpc31)	1	16	16	16	16	66	1616	100	62	100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	15	15	16	16	28	769	100	67	94
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)	1	17	20	23	26	26	249	100	50	74
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_(RNA_p ol_Rpb2_7)	1	23	26	23	26	37	1573	100	62	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_R pb2_6)_(RNA_pol_Rpb2_7)	1	19	22	20	23	36	8705	100	68	95
(RNA_pol_I_A49);(RNA_polI_A34)	1	31	35	31	35	38	2028	100	83	100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	1	11	39	11	39	42	1390	100	72	100
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	2	10	38	11	39	42	609	100	71	91
(DnaJ)_(Sec63);(Plug_translocon)_(SecY)	1	18	18	18	18	28	1244	100	0	100
(DnaJ)_(Sec63);(Sec61_beta)	1	17	17	17	17	28	320	100	0	100
(DnaJ)_(Sec63);(Sec66)	1	18	18	18	18	26	876	100	0	100
(DnaJ)_(Sec63);(SecE)	1	16	16	17	17	28	465	100	0	94
(Plug_translocon)_(SecY);(Sec61_beta)	1	36	38	36	38	0	990	95	32	100
(Plug_translocon)_(SecY);(SecE)	1	42	44	42	44	3	1648	95	32	100
(NMD3);(Ribosomal_L44)	1	14	14	15	15	44	568	100	29	93
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	1	12	45	12	48	12	4564	100	98	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	2	12	45	12	48	51	1317	100	98	100
(Ecotin);(Trypsin)	1	13	18	13	18	26	939	100	100	100
(Ecotin);(Trypsin)	2	11	16	13	18	26	505	94	100	85
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	4	801	41	5	100
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	571	41	5	100
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	1	12	25	21	34	77	260	32	0	57
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	533	41	5	100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	10	418	41	5	100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	252	41	5	100
(EGF)_(FXa_inhibition);(Trypsin)	1	11	32	11	32	10	878	100	100	100
(eIF_4EBP);(IF4E)	1	10	13	13	20	0	1056	100	100	77
(IBN_N)_(Xpo1)_(CRM1_repeat)_(CRM1_repeat_2)_(CRM1_repeat_3) _(CRM1_C);(Ras)	1	16	62	16	72	45	2007	100	68	100
(Ran_BP1);(Ras)	1	14	61	14	67	22	2087	100	93	100
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)_(W2)	1	23	24	23	24	28	1212	100	33	100
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)_(W2)	2	13	13	23	24	28	239	100	31	57
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)	1	15	16	15	16	32	676	100	25	100
(NTP_transferase)_(Hexapep)_(Hexapep);(NTP_transferase)_(Hex apep)_(Hexapep)_(W2)	1	15	16	15	16	32	906	100	25	100
(Ribosomal_L21e);(Ribosomal_L5e)	1	13	73	13	73	21	526	100	1	100
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)	1	11	71	11	71	38	225	100	1	100
(Ephrin);(Ephrin_lbd)	1	10	10	10	10	25	1100	100	100	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	62	62	62	62	4	464	98	0	100
(PsaA_PsaB);(PsaX)	1	12	15	12	15	61	400	100	53	100
(FGF);(I-set)_(I-set)	1	12	15	12	15	17	1383	100	100	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	1	15	30	15	32	27	1734	100	87	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	2	13	24	15	32	27	905	100	96	87
(Filo_glycop);(TLV_coat)	1	24	38	24	38	12	2479	97	82	100
(Filo_glycop);(TLV_coat)	2	24	38	24	38	12	415	84	79	100
(Filo_glycop);(TLV_coat)	3	24	38	24	38	13	454	84	79	100
(Fimbrial);(PapD_N)_(PapD_C)	1	15	17	15	17	5	1653	100	88	100
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	1	39	39	40	40	8	1107	100	3	98
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	2	25	25	40	40	14	917	100	0	62
(Flu_PA);(Flu_PB1)	1	47	56	47	57	3	7848	100	64	100
(Flu_PA);(Flu_PB2)	1	38	47	40	50	21	1820	100	70	95
(Flu_PB1);(Flu_PB2)	1	40	51	40	51	10	5907	100	69	100
(MAPKK1_Int);(Robl_LC7)	1	14	18	14	18	13	1267	100	72	100
(FXa_inhibition);(Trypsin)	1	19	154	19	159	35	899	96	99	100
(Serpin);(Trypsin)	1	11	12	12	13	23	1134	100	92	92
(UQ_con);(zf-RING_2)	1	11	11	12	12	27	564	100	18	92
(Hormone_2);(HRM)_(7tm_2)	1	17	17	17	17	4	1539	100	6	100
(Gamma-thionin);(GP120)	1	11	18	11	18	70	693	100	39	100
(GP120);(V-set_2)_(C1-set)	1	44	62	96	128	12	974	100	53	46
(GP120);(V-set_2)_(C1-set)	2	14	20	96	128	72	307	90	45	15
(GP120);(V-set_2)_(C1-set)	3	12	24	96	128	12	249	0	4	12
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb 2_6)_(RNA_pol_Rpb2_7)	1	11	27	11	27	32	1870	100	70	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_L10)_(RL10P_insert)	1	11	11	11	11	56	568	100	0	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom al_S30)	1	10	10	16	16	58	271	100	0	62
(Herpes_capsid);(Herpes_MCP)	1	11	11	11	11	26	1813	100	0	100
(Herpes_capsid);(Herpes_MCP)	2	11	11	11	11	26	587	100	0	100
(Herpes_MCP);(Herpes_UL35)	1	10	10	10	10	25	1587	100	0	100
(RAG1_imp_bd)_(zf-C3HC4)_(zf-RAG1)_(RAG1);(RAG2)_(RAG2_PHD)	1	14	14	14	14	52	1918	100	0	100
(Hormone_recep);(SRC-1)	1	12	22	57	401	10	666	100	95	21
(NusG)_(KOW);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1 _3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	34	34	34	34	4	662	100	6	100
(Kazal_1);(Trypsin)	1	11	36	11	36	3	645	100	97	100
(KOW)_(Ribosomal_L14e);(KOW)_(Ribosomal_L6e)	1	10	10	10	10	21	536	100	10	100
(KOW)_(Ribosomal_L6e);(Ribosomal_L35Ae)	1	10	10	10	10	21	876	100	10	100
(Lipoprotein_18);(YfiO)	1	12	14	12	14	84	2225	100	86	100
(Peptidase_C48);(Rad60-SLD)	1	11	15	11	15	14	1028	100	87	100
(Peptidase_C65);(ubiquitin)	1	10	11	10	11	10	1039	100	91	100
(Peptidase_S8);(potato_inhibit)	1	11	29	11	29	32	835	100	100	100
(Pico_P1A)_(Rhv);(Rhv)	1	14	19	14	19	10	1732	95	11	100
(Pico_P1A)_(Rhv);(Rhv)	2	12	15	14	19	10	2065	93	7	86
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	11	13	11	13	84	8022	100	62	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(zf-dskA_traR)	1	14	14	14	14	21	1680	100	14	100
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)	1	34	261	35	326	13	2640	100	95	97
(ThiF)_(E1_FCCH)_(E1_4HB)_(ThiF)_(ThiF)_(UBA_e1_thiolCys)_(T hiF)_(E1_UFD);(ubiquitin)	1	11	14	11	14	10	1605	100	100	100
(UQ_con);(zf-C3HC4_3)	1	10	10	10	11	26	512	100	40	100
(C1-set);(MHC_I)_(C1-set)	1	500	1043	501	1055	8	1247	100	93	100
(C1-set);(MHC_I)_(C1-set)	2	39	94	501	1055	18	262	0	3	8
(C1-set);(MHC_I)_(C1-set)	3	31	45	501	1055	23	269	0	9	6
(C1-set);(MHC_I)_(C1-set)	4	26	56	501	1055	83	262	0	0	5
(C1-set);(MHC_I)_(C1-set)	5	24	57	501	1055	19	336	0	7	5
(C1-set);(MHC_I)_(C1-set)	6	23	56	501	1055	72	334	0	0	5
(C1-set);(MHC_I)_(C1-set)	7	19	27	501	1055	85	340	0	0	4
(C1-set);(MHC_I)_(C1-set)	8	18	52	501	1055	68	225	0	0	4
(C1-set);(MHC_I)_(C1-set)	10	17	22	501	1055	24	256	0	5	3
(C1-set);(MHC_I)_(C1-set)	11	13	19	501	1055	65	240	0	0	3
(C1-set);(MHC_I)_(C1-set)	12	13	20	501	1055	68	367	0	0	3
(C1-set);(MHC_I)_(C1-set)	13	12	169	501	1055	84	207	1	0	2
(C1-set);(MHC_I)_(C1-set)	14	12	22	501	1055	17	299	0	0	2
(C1-set);(MHC_I)_(C1-set)	15	12	15	501	1055	65	326	0	0	2
(C1-set);(MHC_I)_(C1-set)	16	11	36	501	1055	83	536	0	3	2
(C1-set);(MHC_I)_(C1-set)	17	11	18	501	1055	65	418	0	0	2
(Complex1_30kDa);(Fer4_7)	1	57	57	69	77	19	271	100	21	83
(Complex1_30kDa);(Oxidored_q6)	1	69	77	80	88	19	638	100	34	86
(Complex1_LYR);(NDUF_B8)	1	43	43	52	52	83	421	100	7	83
(Complex1_LYR);(PP-binding)	1	71	75	74	78	2	749	100	27	96
(COX1);(COX5B)	1	16	63	19	67	0	1237	100	70	84
(COX1);(COX6A)	1	13	60	18	66	21	360	100	68	72
(COX3);(COX6A)	1	17	64	20	68	6	1603	100	66	85
(COX3);(COX7a)	1	16	62	20	68	0	1313	100	73	80
(COX6A);(COX6B)	1	10	56	15	63	28	209	100	66	67
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)	1	51	91	53	95	0	1625	100	71	96
(Fer4_7);(NADHdh)	1	74	79	75	80	16	715	100	24	99
(Fer4_7);(NADHdh_A3)	1	52	52	56	56	7	331	100	19	93
(GRIM-19);(Ndufs5)	1	56	56	60	60	22	1245	100	20	93
(GRIM-19);(Oxidored_q3)	1	50	50	61	61	0	724	100	16	82
(GRIM-19);(Oxidored_q3)	2	10	10	61	61	31	738	100	30	16
(NADH_B2);(NDUF_B12)	1	53	53	53	53	22	842	100	13	100
(NADHdh_A3);(Oxidored_q4)	1	51	51	60	60	22	345	100	16	85
(NDUF_B12);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	51	51	54	54	31	805	100	14	94
(NDUF_B4);(Oxidored_q5_N)_(Proton_antipo_M)	1	51	51	58	58	61	1300	100	16	88
(NDUF_B4);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	51	51	58	58	61	868	100	16	88
(NDUF_B5);(Ndufs5)	1	48	48	51	51	70	970	100	10	94
(NDUFA12);(zf-CHCC)	1	52	52	55	55	26	635	100	15	95
(Oxidored_q3);(Oxidored_q4)	1	79	84	81	86	0	1797	100	26	98
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	1	20	41	20	49	6	1631	100	76	100
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	2	20	39	20	49	6	930	100	74	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	1	26	56	30	65	49	501	100	77	87
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	2	22	44	30	65	49	861	91	73	73
(Img2);(Ribosomal_L27A)	1	29	29	34	34	87	1379	100	14	85
(Img2);(Ribosomal_L4)	1	39	39	44	44	4	821	97	13	89
(L51_S25_CI-B8);(Ribonucleas_3_3)_(dsrm)	1	30	30	34	34	88	1489	100	17	88
(L51_S25_CI-B8);(Ribosomal_L21p)	1	41	41	45	45	0	1293	98	12	91
(MRP-L27);(MRP-L47)	1	36	36	40	40	22	1643	100	14	90
(MRP-L47);(Ribosomal_L23)	1	45	45	45	45	2	1805	98	13	100
(MRP-S23);(Ribosomal_S2)	1	29	29	29	29	75	1793	100	7	100
(MRP-S26);(Ribosomal_S15)	1	29	29	32	32	71	486	100	7	91
(MRP-S26);(Ribosomal_S16)	1	30	30	33	33	4	777	100	7	91
(MRP-S26);(Ribosomal_S6)	1	29	29	32	32	75	904	100	7	91
(MRP-S28);(MRP-S33)	1	28	28	35	35	83	657	100	7	80
(MRP-S28);(Ribosomal_S10)	1	28	28	35	35	13	2093	100	7	80
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	1	52	52	83	83	3	278	100	17	63
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	2	16	16	83	83	85	222	100	12	19
(Ribosomal_L11_N)_(Ribosomal_L11);(Ribosomal_L37)	1	17	17	22	22	23	1504	100	12	77
(Ribosomal_L13);(Ribosomal_L20)	1	418	612	419	616	0	528	100	15	100
(Ribosomal_L13);(Ribosomal_L3)	1	212	285	224	297	3	369	91	7	95
(Ribosomal_L13);(Ribosomal_L3)	2	12	12	224	297	31	870	92	17	5
(Ribosomal_L14);(Ribosomal_L19)	1	427	624	430	627	0	798	100	14	99
(Ribosomal_L17);(Ribosomal_L32p)	1	408	601	413	606	0	375	100	14	99
(Ribosomal_L18p);(Ribosomal_L27)	1	30	30	40	41	6	1101	100	17	75
(Ribosomal_L19);(Ribosomal_L3)	1	425	622	429	626	0	725	100	14	99
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)	1	66	66	106	120	40	237	100	21	62
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_S6)	1	23	23	49	56	18	310	96	4	47
(Ribosomal_L27A);(Ribosomal_L35p)	1	404	594	415	612	0	802	100	13	97
(Ribosomal_L27A);(Ribosomal_L35p)	2	11	16	415	612	45	513	100	69	3
(Ribosomal_L27A);(Ribosomal_L4)	1	431	610	441	637	0	493	100	15	98
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	1	238	395	291	453	1	239	100	12	82
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	2	32	32	291	453	7	1382	100	16	11
(Ribosomal_S10);(Ribosomal_S14)	1	611	888	613	915	0	787	97	14	100
(Ribosomal_S10);(Ribosomal_S9)	1	42	42	59	66	13	389	100	5	71
(Ribosomal_S11);(Ribosomal_S18)	1	102	337	155	422	3	319	100	5	66
(Ribosomal_S11);(Ribosomal_S18)	2	29	29	155	422	27	277	100	7	19
(Ribosomal_S11);(Ribosomal_S21)	1	264	289	277	305	0	1077	100	14	95
(Ribosomal_S11);(Ribosomal_S7)	1	293	508	351	630	0	244	100	15	83
(Ribosomal_S15);(Ribosomal_S17)	1	29	29	38	38	5	366	100	7	76
(Ribosomal_S15);(Ribosomal_S6)	1	29	29	41	41	71	295	100	7	71
(Ribosomal_S18);(Ribosomal_S21)	1	157	181	200	227	0	303	99	12	78
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)	1	88	101	106	119	6	517	75	10	83
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)	2	12	12	106	119	26	291	92	8	11
(Ribosomal_S21);(Ribosomal_S6)	1	26	26	32	32	19	222	100	8	81
(Ribosomal_S7);(Ribosomal_S9)	1	550	797	607	885	0	480	97	12	91
(Ribosomal_S7);(Ribosomal_S9)	2	29	29	607	885	78	1399	100	7	5
(7tm_1);(G-alpha)	1	30	30	37	37	5	1263	100	7	81
(G-alpha);(ZapB)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	20	20	21	21	24	1410	100	10	95
(Ribosomal_L16);(Ribosomal_L25p)	1	257	285	257	285	21	389	100	15	100
(Ribosomal_L23);(Ribosomal_L29)	1	401	654	401	658	0	490	100	13	100
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	1	193	337	221	372	0	975	100	12	87
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	2	17	19	221	372	10	865	100	16	8
(V-set)_(C1-set);(V-set_2)_(C1-set)	1	314	366	315	370	11	1622	100	87	100
(V-set)_(C1-set);(V-set_2)_(C1-set)	2	26	34	315	370	14	368	0	0	8
(V-set)_(C1-set);(V-set_2)_(C1-set)	3	24	25	315	370	16	358	0	0	8
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	1	21	45	22	58	11	1674	100	73	95
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	2	19	43	22	58	11	785	98	77	86
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	3	18	42	22	58	11	442	98	79	82
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)	1	29	29	29	29	38	2645	100	24	100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	1	21	21	23	23	36	370	100	19	91
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	2	15	15	23	23	22	394	100	27	65
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	3	12	12	23	23	30	373	100	8	52
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)	1	48	48	52	52	26	395	100	29	92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)	2	48	48	52	52	31	392	100	27	92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)	3	43	43	52	52	60	483	100	30	83
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)	4	15	15	52	52	31	299	100	33	29
(Proteasome);(Proteasome)_(Pr_beta_C)	1	81	355	85	362	4	1103	100	75	95
(Proteasome);(Proteasome)_(Pr_beta_C)	2	68	187	85	362	13	1342	100	65	80
(Proteasome);(Proteasome)_(Pr_beta_C)	3	68	142	85	362	13	830	100	58	80
(Proteasome);(Proteasome_A_N)_(Proteasome)	1	110	402	110	402	2	477	100	68	100
(Proteasome);(Proteasome_A_N)_(Proteasome)	2	110	402	110	402	2	431	100	67	100
(ORC2);(ORC3_N)_(ORC3_ins)_(ORC_WH_C)	1	12	12	19	19	11	2579	100	17	63
(LRR_9);(LSM)	1	16	16	18	18	4	386	100	12	89
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)	1	181	194	181	194	3	940	87	9	100
(Ribosomal_L18);(Ribosomal_L27A)	1	204	217	208	221	3	866	88	9	98
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)	1	201	214	204	217	5	310	88	9	99
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)	1	156	169	158	171	9	372	85	11	99
(Ribosomal_L24e);(Ribosomal_L3)	1	200	213	200	213	0	581	88	10	100
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)	1	199	212	199	212	11	1001	88	9	100
(Ribosomal_L34e);(Ribosomal_L7Ae)	1	200	213	202	215	4	258	88	9	99
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	1	557	814	573	875	0	419	97	12	97
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	1	565	865	569	871	0	758	97	13	99
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)	1	211	224	216	229	2	493	88	7	98
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	12	12	30	37	47	371	100	0	40
(Ribosomal_L7Ae);(Ribosomal_S27)	1	82	95	88	101	3	540	75	11	93
(Ribosomal_L7Ae);(S10_plectin)	1	23	23	31	31	20	284	91	4	74
(Ribosomal_S11);(Ribosomal_S28e)	1	95	95	111	111	4	288	99	6	86
(Ribosomal_S11);(Ribosomal_S3Ae)	1	244	257	246	259	0	859	90	9	99
(Ribosomal_S13);(Ribosomal_S19)	1	585	881	594	896	0	444	97	10	98
(Ribosomal_S13);(Ribosomal_S19e)	1	218	231	223	236	4	439	89	10	98
(Ribosomal_S13);(Ribosomal_S25)	1	203	216	205	218	0	465	88	8	99
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)	1	243	256	246	259	0	714	90	8	99
(Ribosomal_S14);(Ribosomal_S19)	1	229	257	251	279	6	332	100	14	91
(Ribosomal_S19e);(Ribosomal_S9)	1	139	139	149	149	2	280	99	12	93
(Ribosomal_S27e);(Ribosomal_S8)	1	232	245	232	245	0	478	89	9	100
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	1	600	876	602	904	0	577	97	13	100
(Ribosomal_S5)_(Ribosomal_S5_C);(S4)	1	202	215	209	222	4	362	88	9	97
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )	1	206	219	208	221	0	320	89	9	99
(Ribosomal_S7e);(Ribosomal_S8)	1	240	253	240	253	3	470	90	8	100
(Mpp10);(Ribosomal_S4)_(S4)	1	16	16	16	16	43	988	100	0	100
(Ribosomal_L16);(Ribosomal_L21e)	1	65	78	77	90	4	214	68	6	84
(Ribosomal_L31);(Ribosomal_S19)	1	133	242	161	291	5	436	100	14	83
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	1	198	256	352	448	24	305	100	13	56
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	2	66	66	352	448	39	285	98	0	19
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	3	46	72	352	448	4	312	100	1	13
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	1	316	577	357	646	0	322	100	16	89
(Ribosomal_S4)_(S4);(Ribosomal_S6)	1	28	72	58	136	28	378	4	0	48
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	1	123	151	142	171	4	611	100	67	87
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	2	115	141	142	171	4	278	100	67	81
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	3	105	116	142	171	6	320	100	70	74
(ATP-synt);(ATP-synt_DE_N)	1	89	90	93	94	2	1460	100	66	96
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	1	73	73	131	131	13	749	100	51	56
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	2	71	71	131	131	13	1199	100	63	54
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	3	66	66	131	131	12	599	100	9	50
(ATP-synt_C);(ATP-synt_DE_N)	1	73	73	84	84	3	264	100	75	87
(ATP-synt_C);(ATP-synt_DE_N)	2	62	62	84	84	8	251	100	77	74
(ATP-synt_C);(ATP-synt_DE_N)	3	45	45	84	84	25	222	100	91	54
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	76	189	77	190	21	1004	99	54	99
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	76	189	77	190	38	1528	99	73	99
(Histone);(Histone)_(Histone_H2A_C)	1	193	346	193	365	6	2456	100	63	100
(Histone);(Histone)_(Histone_H2A_C)	2	170	184	193	365	39	658	100	36	88
(Histone);(TAF)	1	202	330	202	381	14	2440	100	61	100
(Histone);(TAF)	2	176	282	202	381	8	514	100	56	87
(Histone);(TAF)	3	175	294	202	381	64	264	99	57	87
(Histone)_(Histone_H2A_C);(TAF)	1	174	299	175	346	11	412	99	58	99
(Adaptin_N);(Clat_adaptor_s)	1	22	24	24	26	10	2596	100	67	92
(Adaptin_N);(Clat_adaptor_s)_(Adap_comp_sub)	1	17	19	17	19	40	3244	100	63	100
(Ribosomal_L28);(Ribosomal_L9_N)	1	19	19	28	28	6	351	95	11	68
(ANAPC2);(Apc1_N)_(APC1_C)	1	11	11	11	11	79	2378	100	36	100
(ubiquitin);(UQ_con)	1	30	30	65	76	23	825	100	60	46
(ubiquitin);(UQ_con)	2	16	18	65	76	0	705	61	44	25
(ubiquitin);(UQ_con)	3	16	20	65	76	1	274	95	40	25
(Kinesin);(Tubulin)_(Tubulin_C)	1	31	31	57	57	5	684	100	35	54
(Kinesin);(Tubulin)_(Tubulin_C)	2	30	30	57	57	23	719	97	37	53
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)	1	33	33	57	58	31	316	100	27	58
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)	3	12	12	57	58	31	287	100	0	21
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)	4	11	11	57	58	31	286	100	36	19
(DSS1_SEM1);(PCI)_(Rpn3_C)	1	24	24	41	41	34	965	100	0	59
(DSS1_SEM1);(PCI)_(Rpn3_C)	2	16	16	41	41	31	808	100	31	39
(DSS1_SEM1);(RPN7)_(PCI)	1	32	32	57	57	0	952	100	3	56
(DSS1_SEM1);(RPN7)_(PCI)	2	25	25	57	57	37	851	100	56	44
(JAB)_(MitMem_reg);(PCI)_(Rpn3_C)	1	39	39	52	52	31	789	100	18	75
(JAB)_(MitMem_reg);(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	19	19	35	35	66	329	100	16	54
(JAB)_(MitMem_reg);(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	2	15	15	35	35	66	567	100	40	43
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	1	27	27	58	58	43	590	100	37	47
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	2	23	23	58	58	43	510	100	26	40
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	3	22	22	58	58	43	507	100	0	38
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	4	20	20	58	58	43	485	100	0	34
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	5	14	14	58	58	43	557	100	57	24
(JAB)_(MitMem_reg);(RPN7)_(PCI)	1	48	49	62	63	4	426	100	18	77
(JAB)_(MitMem_reg);(RPN7)_(PCI)	2	14	14	62	63	37	404	100	57	23
(PCI)_(Rpn3_C);(RPN7)_(PCI)	1	51	51	51	51	27	1261	100	29	100
(PCI)_(Rpn9_C);(VWA_2)	1	13	13	25	25	31	662	100	23	52
(Proteasome_A_N)_(Proteasome);(RPN6_N)_(PCI)_(RPN6_C_helix)	1	19	19	38	38	43	711	100	26	50
(Proteasome_A_N)_(Proteasome);(RPN6_N)_(PCI)_(RPN6_C_helix)	2	10	10	38	38	43	523	100	30	26
(PCI)_(Rpn3_C);(ZapB)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	17	17	22	22	31	628	100	35	77
(MHC_I)_(C1-set);(V-set)_(C1-set)	1	84	166	103	201	10	456	97	49	82
(MHC_I)_(C1-set);(V-set)_(C1-set)	2	14	26	103	201	10	262	0	4	14
(MHC_I)_(C1-set);(V-set)_(DUF1968)	1	95	190	102	200	36	487	97	48	93
(V-set)_(C1-set);(V-set)_(DUF1968)	1	245	440	245	450	7	2048	100	95	100
(V-set)_(C1-set);(V-set)_(DUF1968)	2	12	18	245	450	18	722	0	0	5
(ATP-synt_A);(ATP-synt_C)	1	67	67	101	101	3	363	100	46	66
(ATP-synt_A);(ATP-synt_C)	2	46	46	101	101	3	599	100	11	46
(ATP-synt_A);(ATP-synt_C)	3	44	44	101	101	3	422	100	9	44
(ATP-synt_A);(ATP-synt_C)	4	38	38	101	101	12	580	100	82	38
(ATP-synt_A);(ATP-synt_C)	5	33	33	101	101	15	494	100	91	33
(ATP-synt_A);(ATP-synt_C)	6	22	22	101	101	15	293	100	14	22
(ATP-synt_A);(Mt_ATP-synt_B)	1	32	32	39	39	6	713	100	19	82
(ATP-synt_A);(Mt_ATP-synt_D)	1	22	22	32	32	85	360	100	27	69
(ATP-synt_C)_(ATP-synt_C);(V_ATPase_I)	1	11	11	22	22	38	1194	100	0	50
(ATP-synt_C)_(ATP-synt_C);(V_ATPase_I)	2	11	11	22	22	41	596	100	0	50
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)	1	27	27	27	27	32	621	100	0	100
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)	2	23	23	27	27	42	333	100	0	85
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)	3	22	22	27	27	47	479	100	0	81
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)	4	13	13	27	27	47	274	100	0	48
(ATP-synt_D);(vATP-synt_AC39)	1	27	27	31	31	12	1099	100	19	87
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	1	27	35	27	36	13	2224	97	46	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	2	27	35	27	36	13	1404	94	43	100
(ATP-synt);(IATP)	1	15	15	24	27	30	386	100	27	62
(ATP-synt_8);(Mt_ATP-synt_D)	1	11	11	23	23	4	456	100	45	48
(ATP-synt_A);(ATP-synt_B)	1	30	30	33	33	4	1428	100	0	91
(ATP-synt_A);(ATP-synt_B)	2	15	15	33	33	5	1072	100	0	45
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_B)	2	11	11	29	29	22	628	100	0	38
(ATP-synt_B);(OSCP)	2	12	12	27	27	27	686	100	0	44
(Ribosomal_L14e);(Ribosomal_L18A)	1	25	25	27	27	14	1066	100	8	93
(Ribosomal_L18);(Ribosomal_L28e)	1	93	93	98	98	5	228	99	3	95
(Ribosomal_L24e);(Ribosomal_S6e)	1	82	95	93	106	1	801	76	2	88
(Ribosomal_L28e);(Ribosomal_L32e)	1	96	96	102	102	0	762	99	3	94
(Ribosomal_L28e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	102	102	102	102	13	943	99	4	100
(eIF-5_eIF-2B);(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C)	1	22	23	23	24	8	835	100	43	96
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)	1	33	33	38	38	23	1502	100	30	87
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	1	14	14	75	75	12	634	100	0	19
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	2	10	10	75	75	44	364	100	30	13
(Cullin)_(Cullin_Nedd8);(zf-rbx1)	1	20	20	20	20	20	1960	100	80	100
(Skp1_POZ);(VHL)_(VHL_C)	1	16	54	16	56	4	1019	100	87	100
(GP120);(GP41)	1	115	132	115	139	19	2435	98	35	100
(GP120);(GP41)	2	43	48	115	139	57	235	90	15	37
(GP120);(V-set)_(C1-set)	1	50	69	215	281	16	268	100	54	23
(GP120);(V-set)_(C1-set)	2	29	40	215	281	27	300	95	18	13
(GP120);(V-set)_(C1-set)	3	28	41	215	281	19	287	95	17	13
(GP120);(V-set)_(C1-set)	4	23	25	215	281	20	885	100	28	11
(GP120);(V-set)_(C1-set)	5	15	30	215	281	49	587	100	23	7
(GP41);(V-set)_(C1-set)	1	10	13	87	125	0	298	85	23	11
(Pico_P1A);(Rhv)	1	112	188	115	201	3	1052	100	47	97
(Pico_P1A);(Rhv)	2	105	181	115	201	0	812	100	45	91
(Pico_P1A);(Rhv)	3	99	163	115	201	10	516	100	42	86
(Calici_coat);(Rhv)	1	27	28	28	29	9	1145	100	29	96
(CRPV_capsid);(Rhv)	1	26	26	27	27	5	1296	100	35	96
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	14	43	14	48	33	1931	100	95	100
(Csm2_III-A);(RAMPs)	1	16	16	18	18	19	500	100	0	89
(Csm2_III-A);(RAMPs)	2	16	16	18	18	18	521	100	0	89
(Csm2_III-A);(RAMPs)	3	10	10	18	18	75	282	100	0	56
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	1	21	85	26	120	11	3637	100	94	81
(Chloroa_b-bind);(PsaA_PsaB)	1	16	17	18	19	53	565	100	24	89
(PsaA_PsaB);(PsaL)	1	44	47	44	51	21	540	100	26	100
(PsaA_PsaB);(PsaL)	2	36	39	44	51	21	368	100	26	82
(PsaA_PsaB);(PsaL)	3	11	14	44	51	42	234	100	43	25
(PSI_PsaE);(PSI_PsaF)	1	36	39	37	40	0	259	100	28	97
(PsaA_PsaB);(PSI_PsaH)	1	10	11	10	11	22	906	100	18	100
(PsaA_PsaB);(PSI_PSAK)	1	38	42	40	47	3	608	100	21	95
(Cytochrom_C1);(UCR_Fe-S_N)_(Rieske)	1	12	19	14	21	33	580	100	53	86
(Cytochrome_B)_(Cytochrom_B_C);(UCR_Fe-S_N)_(Rieske)	1	14	21	14	21	13	422	100	48	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_Fe-S_N)_(Rieske)	2	12	19	14	21	13	1088	100	53	86
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)	1	98	266	98	268	5	1093	100	10	100
(Med17);(Med6)	1	11	11	13	13	4	707	100	18	85
(Med6);(Med8)	1	10	10	10	10	4	883	100	20	100
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)	1	35	52	45	66	51	300	96	23	78
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)	1	25	35	32	46	51	300	94	31	78
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)	1	36	40	43	56	10	359	98	25	84
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	33	37	57	61	51	1864	100	84	58
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	2	24	24	57	61	52	1112	100	58	42
(Flavi_NS2B);(Peptidase_S7)	1	13	27	13	28	14	1955	100	93	100
(LAMTOR5);(Robl_LC7)	1	16	16	16	16	14	938	100	62	100
(Kunitz_BPTI);(Trypsin)	1	40	95	43	98	3	676	100	97	93
(GP41);(V-set_2)_(C1-set)	1	14	24	36	60	80	352	100	46	39
(Hemagglutinin);(V-set)_(C1-set)	1	13	14	112	127	24	560	100	50	12
(Hemagglutinin);(V-set)_(C1-set)	2	10	11	112	127	13	499	100	36	9
(Herpes_MCP);(Herpes_V23)	1	15	15	24	24	17	1181	100	0	62
(Herpes_MCP);(Herpes_V23)	2	14	14	24	24	17	930	100	0	58
(Herpes_MCP);(Herpes_V23)	3	11	11	24	24	17	445	100	0	46
(Herpes_MCP);(Herpes_VP19C)	1	10	10	24	24	33	1386	100	0	42
(Herpes_MCP);(Herpes_VP19C)	2	10	10	24	24	13	1201	100	0	42
(Herpes_V23);(Herpes_VP19C)	1	11	11	21	21	33	1252	100	0	52
(Herpes_V23);(Herpes_VP19C)	2	11	11	21	21	33	999	100	0	52
(Herpes_V23);(Herpes_VP19C)	3	10	10	21	21	33	1254	100	0	48
(Herpes_V23);(Herpes_VP19C)	4	10	10	21	21	33	1552	100	0	48
(Histone)_(Histone_H2A_C);(Mab-21)	1	10	10	11	11	69	534	100	0	91
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)	1	13	70	13	70	10	4660	100	100	100
(Neur_chan_LBD);(Neur_chan_LBD)_(Neur_chan_memb)	1	11	11	13	13	14	2482	100	9	85
(OTU);(ubiquitin)	1	11	11	16	16	4	1004	100	91	69
(PKI);(Pkinase)	1	16	177	17	241	77	947	96	88	94
(PKI);(Pkinase)	2	10	130	17	241	0	372	0	2	59
(Polyketide_cyc2);(PP2C)	1	11	22	16	35	39	871	95	91	69
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	1	11	41	14	51	20	1745	100	95	79