Protein Common Interface Database

Clusters with M>=10,SeqId<90 and pair Pfam Architecture

Pfam Architecture	Cluster#	#CFs/Cluster	#Entries/Cluster	#CFs/Group	#Entries/Group	Minimum Seq Identity	Surface Area	In PDBBA(%)	In PISABA(%)	CFs Cluster/Group(%)
(Proteasome);(Proteasome)_(Pr_beta_C)	1	64	332	68	411	13	1127	100	77	94
(Proteasome);(Proteasome)_(Pr_beta_C)	2	53	269	68	411	13	880	100	75	78
(Proteasome);(Proteasome)_(Pr_beta_C)	3	51	316	68	411	13	1396	100	78	75
(Proteasome);(Proteasome_A_N)_(Proteasome)	1	88	379	88	445	3	427	100	69	100
(Proteasome);(Proteasome_A_N)_(Proteasome)	2	88	379	88	445	2	494	100	71	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	1	68	285	68	411	0	627	100	71	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	2	68	333	68	411	13	622	100	73	100
(C1-set);(MHC_I)_(C1-set)	1	425	866	426	884	10	1279	100	91	100
(C1-set);(MHC_I)_(C1-set)	2	35	64	426	884	18	349	0	6	8
(C1-set);(MHC_I)_(C1-set)	3	29	87	426	884	18	262	0	0	7
(C1-set);(MHC_I)_(C1-set)	5	27	73	426	884	19	262	0	1	6
(C1-set);(MHC_I)_(C1-set)	6	24	46	426	884	72	334	0	0	6
(C1-set);(MHC_I)_(C1-set)	4	28	39	426	884	36	269	3	8	7
(C1-set);(MHC_I)_(C1-set)	10	14	47	426	884	83	515	0	4	3
(C1-set);(MHC_I)_(C1-set)	7	18	127	426	884	84	210	1	0	4
(C1-set);(MHC_I)_(C1-set)	9	17	41	426	884	22	230	0	0	4
(C1-set);(MHC_I)_(C1-set)	11	14	21	426	884	69	344	0	0	3
(C1-set);(MHC_I)_(C1-set)	13	11	19	426	884	77	307	0	0	3
(C1-set);(MHC_I)_(C1-set)	12	14	19	426	884	22	320	21	26	3
(Actin);(Gelsolin)	1	15	30	16	31	75	1183	100	100	94
(Actin);(Gelsolin)	2	10	24	16	31	80	399	0	0	62
(Actin);(Gelsolin)	3	10	24	16	31	80	274	0	0	62
(Actin);(WH2)	1	10	10	11	10	6	942	100	90	91
(ETF);(ETF)_(ETF_alpha)	1	10	17	10	17	9	3126	100	94	100
(Adaptin_N);(Clat_adaptor_s)	1	14	16	14	16	11	2689	100	69	100
(Adaptin_N);(Clat_adaptor_s)_(Adap_comp_sub)	1	11	13	11	13	40	3522	100	62	100
(Ald_Xan_dh_C)_(Ald_Xan_dh_C2);(FAD_binding_5)_(CO_deh_flav_ C)	1	10	27	10	27	13	1144	100	100	100
(Thrombin_light);(Trypsin)	1	109	375	109	435	10	1160	100	97	100
(Thrombin_light);(Trypsin)	2	21	32	109	435	75	260	3	16	19
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)	1	33	42	41	50	5	868	100	74	80
(ATP-synt_D);(ATP-synt_F)	1	15	18	24	29	18	1495	100	44	62
(Skp1_POZ);(ubiquitin)	1	20	58	20	59	10	1076	100	83	100
(Histone);(Histone)_(Histone_H2A_C)	1	85	215	85	227	12	2486	100	76	100
(Histone);(Histone)_(Histone_H2A_C)	2	77	197	85	227	40	667	99	74	91
(Histone);(TAF)	1	96	227	97	247	13	2448	100	76	99
(Histone);(TAF)	2	78	193	97	247	9	507	99	73	80
(Histone);(TAF)	3	77	201	97	247	65	264	99	73	79
(Histone)_(Histone_H2A_C);(TAF)	1	78	203	78	220	12	413	99	74	100
(Bclx_interact);(BH4)_(Bcl-2)	1	13	14	13	14	10	1006	100	100	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	1	11	42	11	42	25	1733	100	95	100
(E1_dh);(Transket_pyr)_(Transketolase_C)	2	11	42	11	42	25	1585	100	95	100
(MHC_I)_(C1-set);(V-set)_(C1-set)	1	78	151	91	171	10	431	97	40	86
(MHC_I)_(C1-set);(V-set)_(C1-set)	2	15	27	91	171	10	292	0	4	16
(MHC_I)_(C1-set);(V-set)_(DUF1968)	1	78	155	82	167	10	477	97	43	95
(V-set)_(C1-set);(V-set)_(DUF1968)	1	208	380	208	390	7	2044	100	86	100
(V-set)_(C1-set);(V-set)_(DUF1968)	2	15	22	208	390	18	764	0	0	7
(C1-set);(MHC_I_3)_(C1-set)	1	40	134	40	137	12	1251	100	78	100
(MHC_I_3)_(C1-set);(V-set)_(C1-set)	1	10	61	21	76	23	313	98	59	48
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	2	10	15	11	16	48	485	93	7	91
(C1-set)_(C1-set);(Ig_2)_(Ig_2)	1	11	16	11	16	43	364	94	6	100
(Pico_P1A);(Rhv)	1	58	137	63	148	10	999	100	61	92
(Pico_P1A);(Rhv)	2	54	134	63	148	0	782	100	56	86
(Pico_P1A);(Rhv)	3	47	114	63	148	10	521	100	55	75
(ubiquitin);(UQ_con)	1	31	37	48	46	1	646	95	46	65
(ubiquitin);(UQ_con)	2	12	15	48	46	4	645	53	33	25
(Me-amine-dh_H);(Me-amine-dh_L)	1	18	69	18	70	12	1509	99	94	100
(Me-amine-dh_H);(Me-amine-dh_L)	2	18	69	18	70	12	1139	94	96	100
(Cyclin_N)_(Cyclin_C);(Pkinase)	1	35	166	37	183	10	1544	99	93	95
(Fer4_7);(PsaA_PsaB)	1	15	19	15	22	80	410	100	32	100
(Fer4_7);(PsaA_PsaB)	2	15	22	15	22	0	838	100	41	100
(Fer4_7);(PsaD)	1	15	18	15	22	59	1498	100	28	100
(Fer4_7);(PSI_PsaE)	1	15	22	15	22	44	507	100	36	100
(PsaA_PsaB);(PsaD)	1	17	20	17	24	58	785	100	30	100
(PsaA_PsaB);(PsaD)	2	17	20	17	24	58	731	100	30	100
(PsaA_PsaB);(PsaL)	1	14	17	16	23	39	494	100	29	88
(PsaA_PsaB);(PSI_8)	1	16	23	16	23	7	641	100	39	100
(PsaA_PsaB);(PSI_PsaE)	1	17	21	17	24	44	406	100	24	100
(PsaA_PsaB);(PSI_PsaE)	2	14	18	17	24	45	285	100	28	82
(PsaA_PsaB);(PSI_PsaF)	1	16	20	16	23	42	937	100	30	100
(PsaA_PsaB);(PSI_PsaF)	2	16	20	16	23	42	1004	100	30	100
(PsaA_PsaB);(PSI_PsaJ)	1	14	18	17	22	45	324	100	33	82
(PsaA_PsaB);(PSI_PSAK)	1	17	21	17	24	4	657	100	14	100
(PSI_PsaE);(PSI_PsaF)	1	12	14	16	14	42	255	100	29	75
(PSI_PsaF);(PSI_PsaJ)	1	16	20	16	23	42	679	100	25	100
(COX1);(COX2_TM)_(COX2)	1	23	75	23	77	16	3564	100	71	100
(COX1);(COX3)	1	22	65	22	66	19	2494	100	68	100
(COX1);(COX4)	1	15	56	17	57	81	1329	100	70	88
(COX1);(COX5B)	1	15	55	17	57	86	1239	100	65	88
(COX1);(COX6A)	1	14	54	17	59	30	358	100	61	82
(COX1);(COX7a)	1	16	56	17	59	25	257	100	68	94
(COX1);(COX7B)	1	15	55	15	57	82	331	100	69	100
(COX1);(COX7C)	1	16	56	17	59	30	1700	100	62	94
(COX1);(COX8)	1	15	55	15	57	42	1043	100	67	100
(COX2_TM)_(COX2);(COX4)	1	13	54	17	57	72	860	100	70	76
(COX2_TM)_(COX2);(COX5A)	1	16	56	17	59	36	276	100	64	94
(COX2_TM)_(COX2);(COX6B)	1	17	58	17	59	41	957	100	62	100
(COX2_TM)_(COX2);(COX6C)	1	16	57	17	59	41	1457	100	68	94
(COX3);(COX5B)	1	15	55	17	57	86	889	100	65	88
(COX3);(COX6A)	1	17	57	17	59	6	1606	100	58	100
(COX3);(COX6B)	1	17	58	17	59	43	245	100	64	100
(COX3);(COX7a)	1	16	56	17	59	25	1302	100	68	94
(COX4);(COX5A)	1	15	55	17	57	81	1257	100	67	88
(COX4);(COX6C)	1	13	54	17	57	74	399	100	70	76
(COX4);(COX7B)	1	15	55	15	57	81	1436	100	69	100
(COX4);(COX8)	1	15	55	15	57	42	323	100	67	100
(COX5A);(COX5B)	1	12	52	17	56	86	165	100	67	71
(COX5A);(COX6C)	1	15	55	17	57	73	607	100	65	88
(COX6A);(COX6B)	1	14	54	17	59	30	207	100	57	82
(COX7C);(COX8)	1	15	55	15	57	42	707	100	65	100
(Cpn10);(Cpn60_TCP1)	1	11	17	12	18	34	412	100	88	92
(CytoC_RC);(Photo_RC)	1	13	34	13	37	21	1671	100	94	100
(CytoC_RC);(Photo_RC)	2	13	34	13	37	21	2540	100	97	100
(Photo_RC);(PRCH)_(PRC)	1	23	131	23	137	38	1618	100	97	100
(Photo_RC);(PRCH)_(PRC)	2	23	131	23	137	38	2677	100	98	100
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)	1	18	47	18	51	16	766	100	57	100
(Cytochrom_B559);(Photo_RC)	1	18	46	18	51	3	471	100	61	100
(Cytochrom_B559);(PsbJ)	1	15	45	15	48	6	380	100	44	100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	1	16	45	18	50	10	316	100	58	89
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	2	16	38	18	50	63	1330	100	50	89
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)	1	15	45	15	48	10	376	100	40	100
(Cytochrom_C550);(Photo_RC)	1	13	42	14	46	54	572	100	69	93
(Cytochrom_C550);(PsbU)	1	12	41	12	45	35	644	100	51	100
(Cytochrom_C550);(PSII)	1	14	41	14	47	54	915	100	68	100
(MSP);(Photo_RC)	1	16	44	16	49	10	707	100	41	100
(MSP);(Photo_RC)	2	15	44	16	49	31	676	100	45	94
(MSP);(PsbU)	1	12	40	12	45	35	521	100	42	100
(MSP);(PSII)	1	16	43	16	49	43	1307	100	47	100
(MSP);(PSII)	2	14	43	16	49	43	769	100	42	88
(MSP);(PSII)	3	13	42	16	49	45	394	74	10	81
(Photo_RC);(PsbH)	1	16	45	16	49	31	271	100	53	100
(Photo_RC);(PsbI)	1	16	45	16	49	10	864	100	38	100
(Photo_RC);(PsbL)	1	16	45	16	49	10	399	100	47	100
(Photo_RC);(PsbL)	2	16	45	16	49	10	257	100	49	100
(Photo_RC);(PsbT)	1	16	45	16	49	42	518	100	49	100
(Photo_RC);(PsbT)	2	12	33	16	49	42	220	100	33	75
(Photo_RC);(PsbX)	1	15	43	15	48	7	602	100	51	100
(Photo_RC);(PSII)	1	18	47	18	51	10	2947	100	64	100
(Photo_RC);(PSII)	2	17	47	18	51	17	814	100	68	94
(PsbH);(PsbX)	1	14	43	15	47	31	299	100	47	93
(PsbH);(PSII)	1	16	47	16	49	61	1879	100	60	100
(PsbI);(PSII)	1	16	43	16	49	61	446	100	40	100
(PsbK);(PSII)	1	17	45	17	50	17	799	100	53	100
(PsbK);(PSII_Ycf12)	1	10	38	10	43	4	490	100	47	100
(PsbK);(Ycf9)	1	16	46	16	49	12	274	100	39	100
(PsbL);(PsbM)	1	15	46	15	48	10	811	100	61	100
(PsbL);(PsbT)	1	16	47	16	49	10	599	100	64	100
(PsbL);(PSII)	1	16	47	16	49	10	596	100	51	100
(PsbM);(PsbT)	1	15	45	15	48	33	218	100	24	100
(PsbU);(PSII)	1	12	38	12	45	35	438	100	47	100
(PsbU);(PSII)	2	12	41	12	45	35	449	100	51	100
(PSII);(Ycf9)	1	16	43	16	49	10	441	100	42	100
(PSII_Ycf12);(Ycf9)	1	10	38	10	43	10	402	100	42	100
(Cytochrom_C);(peroxidase)	1	13	19	14	23	37	558	100	32	93
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)	1	34	71	34	81	10	1604	100	83	100
(Cytochrom_C1);(UCR_14kD)	1	30	63	30	73	34	376	100	81	100
(Cytochrom_C1);(UCR_hinge)	1	30	63	30	73	3	1083	100	81	100
(Cytochrom_C1);(UCR_TM)_(Rieske)	1	22	50	22	65	4	747	100	80	100
(Cytochrom_C1);(UCR_UQCRX_QCR9)	1	27	60	30	73	31	842	100	85	90
(Cytochrom_C1);(UcrQ)	1	30	64	30	73	21	726	100	80	100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)	1	30	63	30	73	26	380	100	81	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)	1	30	64	30	73	34	1218	100	80	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	1	22	51	22	65	49	486	100	78	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	2	19	40	22	65	49	814	90	75	86
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)	1	30	63	30	73	21	1004	100	81	100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)	1	26	46	30	73	21	381	87	74	87
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)	1	22	51	22	65	26	877	100	78	100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)	1	27	52	30	73	26	231	100	83	90
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)	1	30	64	30	73	21	826	100	80	100
(UCR_14kD);(UcrQ)	1	27	60	30	73	21	459	100	85	90
(UCR_hinge);(UcrQ)	1	20	41	30	67	21	271	100	88	67
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)	1	22	51	22	65	31	639	100	78	100
(UCR_TM)_(Rieske);(UcrQ)	1	22	51	22	65	12	558	100	78	100
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	1	19	46	19	56	0	1308	100	78	100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_6-4kD)	1	11	23	14	34	82	321	100	74	79
(UCR_6-4kD);(UCR_UQCRX_QCR9)	1	14	27	14	34	79	496	100	63	100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	1	364	624	383	651	0	419	94	15	95
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	1	368	635	383	648	0	772	94	15	96
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	58	58	384	129	4	141	98	14	15
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S5)_(Ribosomal_S5_C)	2	11	11	384	129	4	164	100	36	3
(KOW)_(ribosomal_L24);(Ribosomal_L23)	1	10	10	279	12	80	727	90	30	4
(Ribosom_S12_S23);(Ribosomal_S17)	1	237	476	267	509	3	219	100	22	89
(Ribosomal_L13);(Ribosomal_L20)	1	269	433	280	439	0	522	100	17	96
(Ribosomal_L13);(Ribosomal_L21p)	1	32	129	279	159	39	102	100	9	11
(Ribosomal_L13);(Ribosomal_L22)	1	14	14	866	19	21	547	86	21	2
(Ribosomal_L13);(Ribosomal_L3)	1	200	293	862	418	3	294	87	10	23
(Ribosomal_L13);(Ribosomal_L6)_(Ribosomal_L6)	1	11	71	410	71	32	265	100	1	3
(Ribosomal_L14);(Ribosomal_L19)	1	270	436	277	440	0	801	100	15	97
(Ribosomal_L14);(Ribosomal_L3)	1	278	487	864	515	0	242	92	11	32
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)	1	96	234	100	239	5	1094	100	10	96
(Ribosomal_L16);(Ribosomal_L27)	1	108	212	273	261	7	189	100	14	40
(Ribosomal_L16);(Ribosomal_L30)	1	10	10	282	10	88	422	90	30	4
(Ribosomal_L17);(Ribosomal_L3)	1	95	130	274	288	26	112	100	24	35
(Ribosomal_L17);(Ribosomal_L3)	2	33	107	274	288	27	119	99	7	12
(Ribosomal_L17);(Ribosomal_L32p)	1	260	426	268	429	0	349	100	16	97
(Ribosomal_L18p);(Ribosomal_L27)	1	12	13	266	28	0	233	100	8	5
(Ribosomal_L18p);(Ribosomal_L27)	2	10	10	266	28	87	1087	90	30	4
(Ribosomal_L19);(Ribosomal_L3)	1	268	434	278	439	0	712	100	16	96
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)	1	51	51	208	100	40	206	100	45	25
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_S6)	1	14	14	227	39	17	360	86	7	6
(Ribosomal_L20);(Ribosomal_L21p)	1	270	437	275	440	0	969	100	15	98
(Ribosomal_L20);(Ribosomal_L22)	1	10	10	280	10	86	270	90	30	4
(Ribosomal_L21p);(Ribosomal_L27A)	1	94	128	279	241	40	163	100	21	34
(Ribosomal_L22);(Ribosomal_L32p)	1	269	436	280	439	0	468	100	17	96
(Ribosomal_L23);(Ribosomal_L29)	1	269	493	284	499	0	491	100	14	95
(Ribosomal_L27A);(Ribosomal_L35p)	1	264	427	271	433	0	781	100	16	97
(Ribosomal_L27A);(Ribosomal_L4)	1	271	429	296	442	0	464	100	17	92
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	1	163	293	188	315	0	262	100	14	87
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	1	152	268	179	283	0	960	100	14	85
(Ribosomal_L31);(Ribosomal_S13)	1	98	207	168	238	0	401	100	16	58
(Ribosomal_L31);(Ribosomal_S19)	1	89	178	166	230	9	436	99	20	54
(Ribosomal_L31);(Ribosomal_S19)	2	21	23	166	230	5	388	100	0	13
(Ribosomal_L33);(Ribosomal_L35p)	1	13	17	264	34	31	196	100	0	5
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	1	176	275	318	380	1	289	98	12	55
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	2	32	52	318	380	6	334	96	2	10
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)	1	29	43	317	43	56	265	40	5	9
(Ribosomal_S10);(Ribosomal_S14)	1	384	648	398	664	0	789	94	17	96
(Ribosomal_S10);(Ribosomal_S9)	1	63	161	398	317	5	187	98	12	16
(Ribosomal_S11);(Ribosomal_S18)	1	133	369	271	399	0	296	100	7	49
(Ribosomal_S11);(Ribosomal_S7)	1	219	449	410	498	2	240	99	19	53
(Ribosomal_S13);(Ribosomal_S19)	1	380	649	392	661	0	439	94	11	97
(Ribosomal_S14);(Ribosomal_S19)	1	129	156	388	167	10	316	99	20	33
(Ribosomal_S15);(Ribosomal_S6)	1	15	15	276	15	6	446	87	0	5
(Ribosomal_S16);(Ribosomal_S18)	1	10	10	270	10	84	580	90	0	4
(Ribosomal_S18);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	271	10	82	596	90	0	4
(Ribosomal_S18);(Ribosomal_S6)	1	258	506	272	526	0	925	100	12	95
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)	1	22	22	279	36	2	417	91	9	8
(Ribosomal_S2);(Ribosomal_S8)	1	93	313	269	331	41	260	100	8	35
(Ribosomal_S2);(Ribosomal_S9)	1	13	13	279	13	24	1170	85	0	5
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	1	294	557	338	594	0	331	94	19	87
(Ribosomal_S4)_(S4);(Ribosomal_S6)	1	31	80	259	199	28	366	5	0	12
(Ribosomal_S4)_(S4);(Ribosomal_S6)	2	10	28	259	199	10	260	4	0	4
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	1	386	649	400	666	0	571	94	16	96
(Ribosomal_S7);(Ribosomal_S9)	1	349	585	408	622	0	460	93	13	86
(DKCLD)_(TruB_N)_(TruB_C_2)_(PUA);(Nop10p)	1	10	17	10	17	10	1351	100	100	100
(DNA_RNApol_7kD);(RNA_pol_A_bac)	1	111	205	112	228	0	582	100	52	99
(DNA_RNApol_7kD);(RNA_pol_N)	1	37	38	119	120	40	176	100	45	31
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	91	189	92	208	16	997	99	53	99
(HTH_9)_(RNA_pol_Rpc82)_(TFIIE_alpha);(RNA_pol_3_Rpc31)	1	11	11	11	11	66	1483	100	82	100
(RNA_pol_A_bac);(RNA_pol_L_2)	1	111	207	112	228	4	2026	100	61	99
(RNA_pol_A_bac);(RNA_pol_N)	1	111	205	112	228	3	1113	100	69	99
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	84	177	85	200	21	1695	99	71	99
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	91	187	92	208	22	433	99	63	99
(RNA_pol_L_2);(RNA_pol_Rpb8)	1	31	117	112	160	57	194	99	55	28
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	84	180	85	200	26	1310	99	58	99
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	91	189	92	208	37	1536	99	71	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	117	164	118	165	10	1628	99	62	99
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)	1	28	67	84	99	45	275	99	43	33
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	13	13	13	13	30	1694	100	85	100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	56	146	70	174	49	357	99	63	80
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	69	166	70	185	35	960	99	49	99
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	70	166	70	186	44	1545	99	69	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	70	167	70	186	54	9191	99	60	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)	1	24	59	62	99	51	217	98	42	39
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)	1	70	167	70	186	4	2107	99	69	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	69	164	70	186	4	1902	99	68	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	69	166	70	186	29	1482	99	68	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	60	105	62	119	5	596	99	47	97
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(SHS2_Rpb7-N)_(S1)	1	20	21	69	91	17	250	100	38	29
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)	1	72	117	73	131	2	2058	99	48	99
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)	1	67	110	69	127	4	440	98	44	97
(DNA_topoisoIV);(Toprim)_(DNA_gyraseB_C)	1	10	39	10	39	42	1390	100	67	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	1	10	33	10	33	16	4540	100	94	100
(DUF3364)_(Oxidored_nitro);(Oxidored_nitro)	2	10	33	10	33	51	1304	100	94	100
(DUF5089);(Synaptobrevin)	1	10	15	13	18	10	1147	100	87	77
(DUF5089);(Syntaxin)_(SNARE)	1	14	18	14	19	7	1478	100	94	100
(DUF5089);(Syntaxin)_(SNARE)	2	10	14	14	19	19	339	100	86	71
(Synaptobrevin);(Syntaxin)_(SNARE)	1	25	29	25	30	4	1398	100	72	100
(Ecotin);(Trypsin)	1	12	17	12	17	27	952	100	100	100
(Ecotin);(Trypsin)	2	10	15	12	17	27	512	93	100	83
(ECR1_N)_(EXOSC1);(RNase_PH)_(RNase_PH_C)	1	11	13	15	17	14	762	100	85	73
(EGF)_(FXa_inhibition);(Trypsin)	1	12	26	12	26	38	876	100	100	100
(eIF-1a);(Ribosom_S12_S23)	1	12	12	12	12	10	429	92	25	100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)	1	119	133	127	135	8	493	71	6	94
(KH_2)_(Ribosomal_S3_C);(S10_plectin)	1	119	133	119	133	0	881	71	6	100
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)	1	131	145	138	145	2	460	72	9	95
(Ribosom_S12_S23);(Ribosomal_S30)	1	105	119	111	119	10	458	68	8	95
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)	1	43	43	134	50	32	361	79	0	32
(Ribosomal_L7Ae);(S10_plectin)	1	25	25	119	30	3	292	72	0	21
(Ribosomal_S11);(Ribosomal_S26e)	1	117	131	117	131	10	1108	70	7	100
(Ribosomal_S11);(Ribosomal_S28e)	1	50	50	136	61	4	291	94	4	37
(Ribosomal_S11);(Ribosomal_S3Ae)	1	130	144	133	146	5	861	74	8	98
(Ribosomal_S13);(Ribosomal_S19e)	1	127	141	132	141	2	433	72	8	96
(Ribosomal_S13);(Ribosomal_S25)	1	122	136	126	138	0	462	71	7	97
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)	1	22	22	137	23	35	244	77	9	16
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)	1	133	147	133	147	0	707	73	7	100
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)	1	60	60	130	70	27	199	95	8	46
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)	1	114	128	137	130	10	194	70	8	83
(Ribosomal_S14);(S10_plectin)	1	113	127	119	129	0	290	70	6	95
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)	1	133	147	135	147	5	716	73	9	99
(Ribosomal_S17e);(Ribosomal_S3Ae)	1	27	27	128	29	4	220	100	7	21
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	11	11	11	11	10	529	82	18	100
(Ribosomal_S19e);(Ribosomal_S9)	1	112	125	132	129	28	228	71	8	85
(Ribosomal_S21e);(Ribosomal_S27e)	1	95	109	126	111	10	360	68	8	75
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)	1	124	138	126	138	2	1315	72	8	98
(Ribosomal_S21e);(Ribosomal_S8)	1	120	134	126	134	0	263	72	8	95
(Ribosomal_S24e);(Ribosomal_S4)_(S4)	1	68	82	80	83	8	229	61	7	85
(Ribosomal_S25);(Ribosomal_S7)	1	125	139	126	139	4	597	71	7	99
(Ribosomal_S26e);(Ribosomal_S3Ae)	1	114	128	117	131	10	256	71	6	97
(Ribosomal_S27e);(Ribosomal_S7e)	1	90	104	127	110	29	226	69	9	71
(Ribosomal_S27e);(Ribosomal_S8)	1	129	143	133	143	10	482	73	8	97
(Ribosomal_S28e);(Ribosomal_S7)	1	135	149	137	149	0	1125	73	7	99
(Ribosomal_S30);(Ribosomal_S4)_(S4)	1	70	84	72	84	0	507	61	8	97
(Ribosomal_S7e);(Ribosomal_S8)	1	130	144	131	144	2	465	73	8	99
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	11	11	11	11	10	283	82	18	100
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	1	110	124	115	124	4	1033	70	7	96
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)	1	112	126	115	126	0	1515	71	8	97
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	112	126	117	128	6	534	71	8	96
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	1	131	145	133	145	6	533	74	8	98
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )	1	120	134	128	134	5	310	72	8	94
(Ephrin);(Ephrin_lbd)	1	10	10	10	10	27	1100	100	100	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	1	15	32	15	32	10	1737	100	88	100
(Fib_alpha);(Fib_alpha)_(Fibrinogen_C)	2	13	30	15	32	27	841	100	97	87
(Filo_glycop);(TLV_coat)	1	15	29	15	29	15	2430	97	52	100
(Filo_glycop);(TLV_coat)	2	15	29	15	29	23	469	79	48	100
(Filo_glycop);(TLV_coat)	3	15	29	15	29	23	419	79	48	100
(Fimbrial);(PapD_N)_(PapD_C)	1	14	16	14	16	10	1636	100	88	100
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	1	24	24	26	25	12	884	100	8	92
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	2	12	12	26	25	14	866	100	8	46
(Flu_PA);(Flu_PB1)	1	16	19	16	19	3	7786	100	74	100
(Flu_PA);(Flu_PB2)	1	14	17	14	17	24	2103	100	71	100
(Flu_PB1);(Flu_PB2)	1	14	18	14	18	10	5688	100	78	100
(FXa_inhibition);(Trypsin)	1	18	154	18	176	35	906	96	97	100
(Kunitz_BPTI);(Trypsin)	1	40	95	42	96	0	670	100	94	95
(Serpin);(Trypsin)	1	10	10	14	15	23	1094	100	100	71
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	39	57	39	57	10	2193	100	67	100
(GP120);(V-set)_(C1-set)	1	45	67	156	221	10	280	99	64	29
(GP120);(V-set)_(C1-set)	2	30	41	156	221	4	850	98	51	19
(GP120);(V-set)_(C1-set)	3	21	44	156	221	3	315	93	16	13
(GP120);(V-set)_(C1-set)	4	20	22	156	221	0	627	100	41	13
(GP120);(V-set)_(C1-set)	5	14	33	156	221	56	296	94	15	9
(GP120);(V-set)_(C1-set)	6	12	26	156	221	49	557	100	27	8
(GP120);(GP41)	1	40	65	40	67	16	2426	98	40	100
(GP120);(GP41)	2	18	31	40	67	16	216	81	16	45
(GP41);(V-set)_(C1-set)	1	31	50	65	89	0	444	98	42	48
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	1	39	39	102	42	3	261	97	23	38
(Ribosomal_L10);(Ribosomal_L16)	1	10	10	109	10	85	1212	90	30	9
(Ribosomal_L16);(Ribosomal_L25p)	1	133	159	149	169	24	385	100	20	89
(Ribosomal_S11);(Ribosomal_S21)	1	136	160	149	176	0	1060	99	19	91
(Ribosomal_S18);(Ribosomal_S21)	1	107	131	149	156	0	257	98	19	72
(Colicin_Pyocin);(HNH)	1	10	19	10	20	58	769	100	63	100
(LON_substr_bdg)_(Yippee-Mis18);(MMS1_N)_(CPSF_A)	1	11	14	11	14	82	2369	100	50	100
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)	1	11	11	18	15	19	1659	100	82	61
(Hemagglutinin);(V-set)_(C1-set)	1	10	11	87	92	10	581	100	27	11
(Hormone_recep);(SRC-1)	1	13	21	52	260	10	666	100	95	25
(JAB);(JAB)_(MitMem_reg)	1	31	33	31	33	11	3073	100	52	100
(Ribosomal_L7Ae);(Ribosomal_S27)	1	47	61	52	66	3	517	61	8	90
(Ribosomal_S4)_(S4);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_ S4_C)	1	64	78	76	78	10	388	59	9	84
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)	1	48	62	57	62	10	475	50	6	84
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	53	67	56	67	22	535	52	7	95
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)	1	52	66	58	68	36	314	52	6	90
(Kinesin);(Tubulin)_(Tubulin_C)	1	20	20	43	43	29	651	100	30	47
(Kinesin);(Tubulin)_(Tubulin_C)	2	16	16	43	43	29	636	100	38	37
(Ran_BP1);(Ras)	1	12	44	12	44	22	2101	100	86	100
(Phenol_Hydrox);(Phenol_Hydrox)_(YHS)	1	15	69	15	75	10	4697	100	100	100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	1	128	178	128	178	10	2628	100	90	100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	2	19	22	128	178	21	382	14	9	15
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)	1	30	40	39	49	10	320	95	22	77
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)	1	18	26	39	43	50	265	92	19	46
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)	1	28	32	39	45	20	370	94	22	72
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)	1	11	40	23	105	19	3507	100	100	48
(OTU);(ubiquitin)	1	12	14	13	14	10	1021	100	93	92
(Peptidase_C48);(Rad60-SLD)	1	11	15	11	15	14	1028	100	80	100
(Peptidase_S8);(potato_inhibit)	1	11	29	11	29	32	835	100	100	100
(Pico_P1A)_(Rhv);(Rhv)	1	10	15	14	19	39	1714	93	7	71
(PKI);(Pkinase)	1	17	180	17	249	77	954	96	77	100
(PKI);(Pkinase)	2	12	181	17	249	0	389	0	0	71
(Plug_translocon)_(SecY);(Sec61_beta)	1	10	13	11	14	10	1134	85	85	91
(Plug_translocon)_(SecY);(SecE)	1	12	15	12	15	17	1587	87	87	100
(Polyketide_cyc2);(PP2C)	1	12	29	16	35	10	869	97	93	75
(Rhv);(VP4_2)	1	17	27	22	33	13	584	100	70	77
(Rhv);(VP4_2)	2	13	20	22	33	65	240	100	65	59
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)	1	129	143	135	143	2	761	73	10	96
(Ribosomal_L37ae);(Ribosomal_L7Ae)	1	12	12	139	15	58	259	67	0	9
(Ricin_B_lectin)_(Ricin_B_lectin);(RIP)	1	10	39	10	39	28	1546	100	95	100
(Rieske)_(Ring_hydroxyl_A);(Ring_hydroxyl_B)	1	13	50	13	50	20	1775	100	96	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)	1	44	75	49	84	11	998	100	59	90
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	23	60	23	60	80	1937	100	88	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	2	21	57	23	60	80	255	100	93	91
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (RNA_pol_Rpb6)	1	13	28	22	53	84	161	100	96	59
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	1	23	50	23	51	9	1753	100	90	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	2	22	48	23	51	9	664	98	85	96
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)	1	19	171	22	226	12	2615	100	85	86
(Stathmin);(Tubulin)_(Tubulin_C)	1	13	115	13	123	56	656	100	79	100
(Stathmin);(Tubulin)_(Tubulin_C)	2	13	114	13	123	56	1538	100	78	100
(Stathmin);(Tubulin)_(Tubulin_C)	3	11	112	13	123	3	778	100	76	85
(ubiquitin);(UCH)	1	15	18	22	32	15	1704	94	83	68
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	1	126	140	137	140	3	765	73	8	92
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)	1	125	139	136	142	1	955	73	9	92
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	113	127	133	133	3	417	72	9	85
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)	1	123	137	129	139	10	664	72	8	95
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	1	123	137	129	139	3	508	72	8	95
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	2	110	124	129	139	13	281	73	8	85
(Ribosomal_L13);(Ribosomal_L18A)	1	123	137	136	137	12	680	72	8	90
(Ribosomal_L13);(Ribosomal_L35Ae)	1	128	131	134	144	2	225	79	8	96
(Ribosomal_L13e);(Ribosomal_L15e)	1	129	143	132	143	31	501	73	8	98
(Ribosomal_L13e);(Ribosomal_L18)	1	109	123	132	125	10	229	70	7	83
(Ribosomal_L13e);(Ribosomal_L27A)	1	124	138	125	138	10	1466	72	8	99
(Ribosomal_L13e);(Ribosomal_L29)	1	129	143	130	143	2	900	73	8	99
(Ribosomal_L13e);(Ribosomal_L36e)	1	121	135	132	135	10	641	72	8	92
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	118	132	132	133	31	203	73	9	89
(Ribosomal_L14);(Ribosomal_L24e)	1	140	215	146	215	0	516	82	7	96
(Ribosomal_L15e);(Ribosomal_L29)	1	126	140	146	140	20	355	72	9	86
(Ribosomal_L15e);(Ribosomal_L36e)	1	125	139	134	139	10	529	73	9	93
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	124	138	137	139	10	267	72	9	91
(Ribosomal_L15e);(Ribosomal_L7Ae)	1	139	213	148	213	3	933	82	6	94
(Ribosomal_L16);(Ribosomal_L21e)	1	85	99	128	103	10	201	64	7	66
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	98	112	133	115	49	256	67	6	74
(Ribosomal_L18);(Ribosomal_L27A)	1	124	138	141	141	10	880	72	8	88
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)	1	121	135	137	135	10	255	72	7	88
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	130	144	137	144	10	1108	73	8	95
(Ribosomal_L18A);(Ribosomal_L21e)	1	121	135	131	135	1	893	73	8	92
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)	1	128	142	134	142	1	475	73	8	96
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	67	81	134	81	36	243	62	14	50
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)	1	121	135	132	138	21	305	72	9	92
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)	1	135	209	138	209	0	1227	82	5	98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)	1	118	132	140	132	4	300	72	8	84
(Ribosomal_L21e);(Ribosomal_L29e)	1	116	130	120	130	10	475	71	7	97
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	123	137	131	137	10	594	72	8	94
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	120	134	140	204	10	850	71	7	86
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	2	10	70	140	204	21	524	100	1	7
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)	1	127	141	131	142	10	215	74	9	97
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)	1	116	130	131	132	6	366	71	8	89
(Ribosomal_L24e);(Ribosomal_L3)	1	130	204	145	204	0	482	81	7	90
(Ribosomal_L24e);(Ribosomal_S6e)	1	50	64	84	68	1	815	58	3	60
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)	1	20	34	154	36	8	342	0	0	13
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)	1	127	141	140	141	10	191	72	9	91
(Ribosomal_L27A);(Ribosomal_L36e)	1	117	131	127	131	10	228	72	8	92
(Ribosomal_L29);(Ribosomal_L37e)	1	94	108	146	111	38	174	73	9	64
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	20	20	120	23	82	481	100	0	17
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)	1	123	137	136	139	37	1031	72	9	90
(Ribosomal_L34e);(Ribosomal_L7Ae)	1	124	138	132	140	10	261	72	8	94
(Ribosomal_L36e);(Ribosomal_L7Ae)	1	124	138	134	138	9	307	72	9	93
(Ribosomal_L37e);(Ribosomal_L39)	1	118	137	139	175	29	220	73	7	85
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)	1	93	107	123	112	10	188	67	6	76
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)	1	132	206	144	206	1	235	81	5	92
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2 _45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	21	36	21	37	11	1877	100	42	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_ Rpb2_7)	1	21	36	21	37	90	7940	100	42	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)	1	17	30	18	31	36	2434	100	60	94
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_ Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	21	36	21	37	80	261	100	42	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_ Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(Sigma70_r1_2)_(S igma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	16	27	16	28	81	2038	100	56	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)	1	71	85	79	85	36	489	61	13	90
(Ribosomal_L22);(Ribosomal_L6e)	1	16	16	79	19	82	107	75	12	20
(Ribosomal_L32e);(Ribosomal_L6e)	1	63	77	79	77	41	519	60	13	80
(Ribosomal_L35Ae);(Ribosomal_L6e)	1	75	89	78	89	40	843	63	12	96
(V-set)_(C1-set);(V-set_2)_(C1-set)	1	59	85	61	86	12	1655	100	88	97
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _POL_M_15KD)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1 _3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	12	43	13	46	74	1189	100	93	92
(RNA_POL_M_15KD)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_ Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	13	45	13	46	74	8591	100	98	100
(RNA_POL_M_15KD)_(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_ Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	13	45	13	46	74	2311	100	98	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (Sigma70_r1_2)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	15	45	15	45	67	1925	100	93	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	22	42	22	42	84	7932	100	76	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	14	37	14	38	78	2771	100	76	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_ (RNA_pol_Rpb2_7);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigma70_ner) _(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	10	25	10	25	89	2122	100	92	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)	1	21	29	21	29	84	938	100	62	100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	1	45	62	57	65	6	571	100	76	79
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	2	40	56	57	65	19	255	100	75	70
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	3	35	48	57	65	19	261	100	79	61
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	1	46	63	57	65	10	481	100	76	81
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	2	45	62	57	65	19	547	100	76	79
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	3	44	60	57	65	19	513	100	78	77
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab)_(T3SS_ATPase_C)	1	60	79	60	80	18	1947	100	76	100
(ATP-synt);(ATP-synt_Eps)	1	29	37	29	37	10	795	100	84	100
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)	1	24	32	26	34	21	659	100	81	92
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	1	13	21	13	21	45	1683	95	52	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	2	13	21	13	21	45	1135	95	48	100
(GP120);(V-set_2)_(C1-set)	1	17	31	25	36	12	994	100	68	68
(IBN_N)_(Xpo1)_(CRM1_repeat)_(CRM1_repeat_2)_(CRM1_repeat_3) _(CRM1_C);(Ras)	1	13	46	13	47	45	2019	100	80	100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	4	801	33	5	100
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)	1	59	73	61	73	34	662	67	7	97
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	71	570	33	5	100
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	1	20	33	25	38	71	255	24	3	80
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	71	531	33	5	100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	10	418	33	5	100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	38	25	39	71	252	34	5	100
(S10_plectin);(Stm1_N)_(HABP4_PAI-RBP1)	1	16	30	25	30	74	192	23	7	64
(CRPV_capsid);(Rhv)	1	21	21	24	25	6	1219	100	29	88
(EF-hand_6)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(EzrA)	1	15	16	17	21	35	1540	94	19	88
(EF-hand_6)_(EF-hand_7);(Myosin_N)_(Myosin_head)_(EzrA)	2	13	16	17	21	34	1306	100	25	76
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	1	12	12	28	13	22	246	92	8	43
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	2	11	11	28	13	22	247	91	9	39
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	18	21	18	21	6	2474	100	57	100
(Complex1_30kDa);(Oxidored_q6)	1	18	21	25	25	28	552	100	57	72
(Complex1_30kDa);(Complex1_49kDa)	1	25	28	25	28	5	2460	100	43	100
(Fer4_7);(Oxidored_q6)	1	17	20	21	24	10	1290	100	60	81
(Complex1_49kDa);(Oxidored_q6)	1	21	24	25	28	7	1297	100	50	84
(Complex1_49kDa);(Fer4_7)	1	21	24	21	24	17	1503	100	50	100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)	1	11	11	11	11	28	870	100	82	100
(RNase_PH)_(RNase_PH_C);(Rrp40_N)_(KH_6)	2	11	11	11	11	26	1296	100	73	100
(ECR1_N)_(EXOSC1);(Rrp40_N)_(KH_6)	1	11	11	11	11	28	449	100	82	100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	1	14	14	14	14	34	1195	100	64	100
(ECR1_N)_(EXOSC1)_(KH_6);(RNase_PH)_(RNase_PH_C)	2	14	14	14	14	20	1421	100	64	100
(Inhibitor_I9);(Peptidase_S8)_(PCSK9_C1)_(PCSK9_C2)_(PCSK9_C 3)	1	10	14	10	14	10	1314	100	100	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	1	15	15	25	24	22	501	100	13	60
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	2	15	15	25	24	22	571	100	0	60
(eIF-6);(Ribosomal_L14)	1	18	18	24	18	60	830	100	39	75
(ATP-synt_D);(vATP-synt_AC39)	1	13	13	17	16	12	795	100	0	76
(Med17);(Med6)	1	10	11	10	11	4	707	100	18	100
(Img2);(Ribosomal_L4)	1	14	14	16	16	17	974	86	14	88
(Ribosomal_L4);(Ribosomal_L50)	1	13	13	13	13	5	1185	85	15	100
(MRP-L27);(Ribosomal_L23)	1	13	13	13	13	6	1458	85	15	100
(MRP-L27);(MRP-L47)	1	13	13	13	13	15	1736	85	15	100
(MRP-L27);(Ribosomal_L34)	1	13	13	13	13	22	423	85	15	100
(L51_S25_CI-B8);(Ribosomal_L13)	1	13	13	15	15	20	773	85	15	87
(L51_S25_CI-B8);(Ribosomal_L50)	1	10	10	14	14	80	694	90	30	71
(L51_S25_CI-B8);(Ribosomal_L21p)	1	13	13	15	15	3	1285	85	15	87
(KOW)_(Ribosomal_L6e);(Ribosomal_L35Ae)	1	11	11	11	11	21	862	91	9	100
(KOW)_(Ribosomal_L14e);(KOW)_(Ribosomal_L6e)	1	11	11	11	11	21	534	91	9	100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C);(Ribosoma l_L10)_(RL10P_insert)	1	11	11	11	11	56	568	100	0	100
(Ribosomal_L3);(TGS)_(tRNA_SAD)	1	10	10	10	10	82	576	90	20	100
(Img2);(MRP-63)	1	10	10	10	10	72	603	90	20	100
(CR6_interact);(MRP-L51)	1	10	10	10	10	76	424	90	20	100
(MRP-63);(MRPL52)	1	10	10	10	10	72	386	90	20	100
(MRP_L53);(Ribosomal_S18)	1	10	10	10	10	85	519	90	20	100
(PBP);(Ribosomal_L18p)	1	10	10	10	10	87	2540	90	20	100
(PBP);(Ribosomal_S10)	1	10	10	10	10	76	681	90	20	100
(PBP);(RF-1)	1	11	11	11	11	77	905	91	18	100
(Ribosomal_L22);(TGS)_(tRNA_SAD)	1	10	10	10	10	78	364	90	20	100
(MRP-L28);(MRP-L46)_(NUDIX)	1	12	12	14	14	21	2278	83	17	86
(MRP-L28);(Ribosomal_S10)	1	10	10	10	10	72	1358	90	30	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L13)	1	12	12	13	12	14	745	83	17	92
(L51_S25_CI-B8);(MRP-S32)	1	10	10	10	10	69	652	90	30	100
(L51_S25_CI-B8);(Ribonucleas_3_3)_(dsrm)	1	13	13	13	13	14	1512	85	23	100
(L51_S25_CI-B8);(MRP-63)	1	10	10	10	10	72	381	90	20	100
(RF-1);(Ribosomal_L27A)	1	10	10	10	10	77	1422	90	20	100
(MRP-L51);(Ribonucleas_3_3)_(dsrm)	1	10	10	10	10	82	373	90	20	100
(MRP-S26);(Ribosomal_S6)	1	13	13	13	13	3	983	85	0	100
(DAP3);(Ribosomal_S7)	1	10	10	13	13	85	949	90	0	77
(DAP3);(Ribosomal_S9)	1	16	16	16	16	21	1033	88	0	100
(MRP-S24);(MRP-S33)	1	10	10	10	10	10	553	90	0	100
(MRP-S33);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	10	10	82	946	90	0	100
(MRP-S26);(Ribosomal_S15)	1	12	12	12	12	10	555	83	0	100
(MRP-S22);(Ribosomal_S16)	1	10	10	10	10	68	1073	90	0	100
(L51_S25_CI-B8);(Ribosomal_S16)	1	10	10	10	10	87	635	90	0	100
(MRP-S26);(Ribosomal_S16)	1	13	13	13	13	3	823	85	0	100
(L51_S25_CI-B8);(Ribosomal_S17)	1	10	10	10	10	86	1296	90	0	100
(MRP-S33);(Ribosomal_S14)	1	13	13	13	13	22	1197	85	0	100
(MRP-S22);(Ribosomal_S18)	1	10	10	10	10	68	1990	90	0	100
(MRP-S26);(Ribosomal_S18)	1	10	10	13	10	75	795	90	0	77
(MRP-S26);(Ribosomal_S18)	2	10	10	13	10	75	589	90	0	77
(MRP-S23);(Ribosomal_S18)	1	10	10	10	10	80	460	90	0	100
(MRP-S35);(Ribosomal_S21)	1	10	10	10	10	85	693	90	0	100
(L51_S25_CI-B8);(MRP-S22)	1	10	10	10	10	68	449	90	0	100
(MRP-S23);(MRP-S35)	1	10	10	10	10	82	932	90	0	100
(L51_S25_CI-B8);(MRP-S26)	1	10	10	10	10	75	594	90	0	100
(MRP-S34);(Ribosomal_S18)	1	10	10	10	10	82	846	90	0	100
(MRP-S22);(MRP-S34)	1	10	10	10	10	68	283	90	0	100
(MRP-S26);(MRP-S34)	1	10	10	10	10	75	766	90	0	100
(MRP-S31);(MRP-S33)	1	10	10	10	10	75	702	90	0	100
(MRP-S23);(Ribosomal_S2)	1	10	10	10	10	75	1806	90	0	100
(MRP-S35);(Ribosomal_S2)	1	10	10	10	10	75	1118	90	0	100
(MRP-S24);(MRP-S31)	1	10	10	10	10	75	277	90	0	100
(MRP-S24);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	10	10	82	493	90	0	100
(MRP-S24);(Ribosomal_S10)	1	10	10	10	10	86	610	90	0	100
(MRP-S24);(Ribosomal_S14)	1	10	10	10	10	86	984	90	0	100
(CHCH);(Ribosomal_S6)	1	10	10	10	10	85	502	90	0	100
(CHCH);(Ribosomal_S7)	1	10	10	13	13	85	896	90	0	77
(CHCH);(Ribosomal_S21)	1	10	10	13	13	7	941	90	0	77
(CHCH);(MRP-S35)	1	10	10	10	10	85	385	90	0	100
(MRP-S31);(Ribosomal_S10)	1	10	10	10	10	75	257	90	0	100
(MRP-S22);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	10	10	68	1174	90	0	100
(MRP-S23);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	10	10	82	620	90	0	100
(L51_S25_CI-B8);(Ribosomal_S5)_(Ribosomal_S5_C)	1	10	10	10	10	82	557	90	0	100
(MRP-S31);(Ribosomal_S14)	1	10	10	10	10	75	624	90	0	100
(PRO8NT)_(PROCN)_(RRM_4)_(U5_2-snRNA_bdg)_(U6-snRNA_bdg)_(PR P8_domainIV)_(JAB)_(PROCT);(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )_(WD40)_(WD40)	1	13	13	32	13	39	1721	100	15	41
(G10);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	11	11	11	11	42	910	100	0	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C); (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	24	24	28	28	34	1048	100	17	86
(Cwf_Cwc_15);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )	1	28	28	28	28	22	1299	100	7	100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	29	29	29	29	4	1580	100	10	100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	2	10	10	29	29	42	842	100	0	34
(Pro_isomerase);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(W D40)	1	10	10	11	10	42	719	100	0	91
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)	1	56	56	56	56	37	1426	100	29	100
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	1	41	41	56	56	43	501	100	15	73
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	2	26	26	56	56	43	574	100	38	46
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	1	54	54	54	54	31	1638	100	26	100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	2	23	23	54	54	31	253	100	22	43
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)	1	51	51	54	51	27	314	100	27	94
(Nop)_(Prp31_C);(Ribosomal_L7Ae)	1	10	10	12	10	25	502	100	50	83
(DIM1);(Nop)_(Prp31_C)	1	10	10	10	10	25	414	100	50	100
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)	1	52	52	52	52	27	623	100	27	100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)	1	43	43	47	43	38	2558	100	26	91
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(P C_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)	1	37	37	42	42	43	778	100	22	88
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(DASH_Hsk3)_(Pro t_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	19	19	20	20	36	3249	100	21	95
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)	1	18	18	40	36	37	319	100	28	45
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN7)_(PCI)	2	10	10	40	36	37	894	100	30	25
(JAB)_(MitMem_reg);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_ (HEAT_2)_(RPN2_C)	1	32	32	50	38	60	888	100	22	64
(PCI)_(Rpn9_C);(VWA_2)	1	24	24	36	36	31	552	100	21	67
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	1	29	29	39	36	22	376	100	17	74
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	2	29	29	39	36	28	454	100	17	74
(Proteasome_A_N)_(Proteasome);(RPN6_N)_(PCI)_(RPN6_C_helix)	1	29	29	44	43	43	662	100	31	66
(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteasome)	1	24	24	27	26	34	428	100	29	89
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(PC_rep)_(P C_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)	1	31	31	46	45	43	1077	100	13	67
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN6_N)_(PCI)_(RPN6_C_he lix)	1	10	10	30	13	43	518	100	20	33
(eIF-6);(Ribosomal_L3)	1	11	11	22	11	61	267	100	45	50
(Calici_coat);(CRPV_capsid)	1	20	20	20	20	7	4578	100	20	100
(JAB)_(MitMem_reg);(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	23	23	35	24	60	432	100	9	66
(Complex1_49kDa);(Oxidored_q4)	1	18	18	20	18	25	439	100	33	90
(Complex1_49kDa);(NADHdh)	1	21	21	21	21	21	1143	100	29	100
(NADHdh);(Oxidored_q6)	1	17	17	21	21	21	1214	100	35	81
(Fer4_7);(NADHdh)	1	18	18	18	18	21	704	100	33	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_beta_N)_(TFIIF_beta)	1	17	17	19	17	24	1367	100	6	89
(TBP)_(TBP);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	18	18	19	18	33	506	100	6	95
(ATP-synt_A);(Mt_ATP-synt_B)	1	10	10	16	13	22	813	100	40	62
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TFIIF_alpha)	1	15	15	17	17	17	1236	100	0	88
(TFIIF_alpha);(TFIIF_beta_N)_(TFIIF_beta)	1	17	17	17	17	8	2204	100	6	100
(bZIP_1)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)	1	17	17	17	17	89	2310	100	12	100
(JIP_LZII)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_ N)_(Proteasome)	1	27	27	27	27	4	695	100	26	100
(bZIP_1)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(JIP_LZII)_(Prot _ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	17	17	17	17	89	3746	100	12	100
(RPN7)_(PCI);(TPR_2)_(PCI)_(Rpn3_C)	1	31	31	31	31	72	1304	100	26	100
(CSN8_PSD8_EIF3K);(TPR_2)_(PCI)_(Rpn3_C)	1	30	30	30	30	66	1870	100	23	100
(JAB)_(MitMem_reg);(TPR_2)_(PCI)_(Rpn3_C)	1	27	27	31	31	72	784	100	11	87
(DSS1_SEM1);(TPR_2)_(PCI)_(Rpn3_C)	1	21	21	30	25	34	983	100	0	70
(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C);( TPR_2)_(PCI)_(Rpn3_C)	1	29	29	29	29	72	607	100	21	100
(MMS1_N)_(CPSF_A);(PHF5)	1	13	13	18	13	10	636	100	8	72
(Fer4_7);(zf-CHCC)	1	10	10	10	10	28	849	100	50	100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(ETC_C1_NDUFA4)	1	10	10	11	10	29	486	100	20	91
(NADHdh);(NADHdh_A3)	1	13	13	13	13	38	664	100	38	100
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)	1	12	12	13	12	54	925	100	33	92
(Proton_antipo_M)_(NADH_dehy_S2_C);(Tim17)	1	11	11	12	11	54	522	100	36	92
(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C);(Tim17)	1	11	11	13	11	64	522	100	36	85
(Complex1_LYR);(ETC_C1_NDUFA4)	1	10	10	11	10	28	480	100	20	91
(NDUF_B5);(NDUFB10)	1	12	12	13	12	24	952	100	42	92
(NDUF_B5);(NDUF_C2)	1	12	12	13	12	24	665	100	42	92
(dNK);(NDUF_C2)	1	11	11	13	11	42	316	100	36	85
(MWFE);(NADHdh)	1	14	14	14	14	30	1506	100	36	100
(GRIM-19);(NADHdh)	1	14	14	14	14	22	881	100	36	100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)	1	13	13	13	13	54	1194	100	38	100
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	13	13	13	13	54	1618	100	38	100
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	13	13	13	13	51	644	100	38	100
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	12	12	13	12	54	810	100	42	92
(dNK);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	12	12	13	12	54	1332	100	33	92
(NDUF_B5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	11	11	13	12	24	255	100	36	85
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	13	13	13	13	42	1002	100	38	100
(NADHdh_A3);(Oxidored_q4)	1	12	12	13	12	38	362	100	42	92
(NDUF_B5);(Oxidored_q5_N)_(Proton_antipo_M)	1	13	13	13	13	24	1066	100	38	100
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)	1	13	13	14	13	31	648	100	38	93
(Complex1_LYR);(Oxidored_q5_N)_(Proton_antipo_M)	1	13	13	14	14	22	331	100	31	93
(Ndufs5);(Oxidored_q2)	1	14	14	14	14	21	433	100	36	100
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	13	13	14	13	31	953	100	38	93
(Complex1_LYR);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	14	14	14	14	22	1294	100	36	100
(Ndufs5);(Oxidored_q3)	1	12	12	14	12	51	717	100	42	86
(GRIM-19);(NADHdh_A3)	1	12	12	13	12	38	515	100	42	92
(NDUF_B5);(Ndufs5)	1	12	12	13	12	24	873	100	42	92
(Complex1_30kDa);(ETC_C1_NDUFA5)	1	14	14	14	14	7	1317	100	36	100
(Complex1_49kDa);(ETC_C1_NDUFA5)	1	13	13	14	13	34	352	100	38	93
(Complex1_30kDa);(Complex1_LYR)	1	14	14	14	14	28	1019	100	36	100
(Complex1_LYR);(NDUF_B5)	1	12	12	13	12	24	455	100	42	92
(Complex1_30kDa);(ETC_C1_NDUFA4)	1	11	11	11	11	29	1266	100	18	100
(NADH_dh_m_C1);(NDUF_C2)	1	13	13	13	13	42	741	100	38	100
(NDUF_B6);(PP-binding)	1	12	12	12	12	25	461	100	42	100
(Complex1_49kDa);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	10	10	10	10	54	780	100	40	100
(Complex1_49kDa);(GRIM-19)	1	13	13	13	13	22	894	100	38	100
(ESSS);(Oxidored_q5_N)_(Proton_antipo_M)	1	12	12	12	12	72	1579	100	42	100
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)	1	12	12	12	12	66	773	100	42	100
(NDUF_B4);(Oxidored_q5_N)_(Proton_antipo_M)	1	13	13	13	13	22	1305	100	38	100
(Oxidored_q5_N)_(Proton_antipo_M);(Tim17)	1	11	11	12	11	64	227	100	36	92
(ESSS);(NDUF_B5)	1	12	12	12	12	24	868	100	42	100
(NADH_oxidored);(NDUF_B5)	1	12	12	12	12	24	502	100	42	100
(Complex1_LYR);(NDUF_B6)	1	12	12	12	12	25	930	100	42	100
(ESSS);(NDUFB10)	1	12	12	12	12	31	1431	100	42	100
(NDUF_C2);(NDUFB10)	1	12	12	12	12	31	605	100	42	100
(NDUF_B4);(NDUFB10)	1	12	12	12	12	31	330	100	42	100
(dNK);(NADH_dh_m_C1)	1	11	11	12	11	58	423	100	45	92
(GRIM-19);(Ndufs5)	1	13	13	13	13	22	1133	100	38	100
(NDUFA12);(Oxidored_q6)	1	12	12	13	12	33	304	100	42	92
(NDUF_B4);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	12	12	13	12	61	860	100	42	92
(NDUF_B7);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	12	12	13	13	24	677	100	33	92
(GRIM-19);(Oxidored_q3)	1	13	13	13	13	12	659	100	38	100
(Complex1_LYR);(NDUF_B4)	1	12	12	13	12	61	1055	100	42	92
(GRIM-19);(MWFE)	1	13	13	13	13	22	542	100	38	100
(ArfA);(PCRF)_(RF-1)	1	10	10	10	10	42	1140	100	40	100
(Tfb2)_(Tfb2_C);(Tfb5)	1	10	10	10	10	5	954	100	0	100
(Csm2_III-A);(RAMPs)	1	15	15	15	15	22	341	100	0	100
(Csm2_III-A);(RAMPs)	2	14	14	15	15	22	512	100	0	93