Column description for a cluster summary table
| Column | Annotation |
|---|---|
| +/- | Show/Hide the list of assemblies in a cluster. Click "[+]" to show the table of assemblies in a cluster. Click [-] to hide the table of assemblies. |
| ClusterID | The integer number for a cluster |
| Symmetry | The symmetry of an assembly, e.g. C1 (asymmetric), Cn (cyclic symmetry, n>=2), Dn (dihedral symmetry) |
| Stoichiometry | The stoichiometry of an assembly, e.g. A (monomer), A4 (homo tetramer), AB (hetero dimer), A3B3 (hetero hexamer) |
| #CF | The number of distinct crystal forms (CFs) in a cluster. R_CF (#CFs / #Crystal-Forms(Arch)) is given in the parentheses. #Crystal-Forms (Arch) is given in the caption of the gridview table. |
| #UNP | The number of UniProts in a cluster. R_UNP (#UNP / #UNP(Arch)) is given in the parentheses. #UNP(Arch) is given in the caption of the gridview table. |
| #Entries | The number of entries in a cluster. R_ENT (#Entries / #PDB(Arch)) is given in the parentheses. #PDB(Arch) is given in the caption of the gridview table. |
| #CFs_UNParch | The number of crystal forms of these same cluster UniProts in a Pfam architecture |
| #CFs_UNPclus | The number of crystal forms of UniProts in a cluster. R_CF_UNPclus (#CFs_UNPclus / #CFs_UNParch) is given in the parentheses. |
| #PDBBA | The number of entries that have any PDB bioligcal assemblies in a cluster. R_PDB (#PDBBA / #Entries) is given in the parentheses. |
| #EPPICBA | The number of entries that have EPPIC bioligcal assemblies (marked as "bio" in EPPIC) in a cluster. R_EPPIC (#EPPICBA / #Entries) is given in the parentheses. |
| #PISABA | The number of entries that have PISA biological assemblies (PQS set = 1) in a cluster. R_PISA (#PISABA / #Entries) is given in the parentheses. |
| Seq_Identity | The minimum sequence identity of sequences in a cluster |
| image | The image of the representative assembly (first assembly in the best resolution) in a cluster. "Mouse over" to show larger image, "Mouse click" to view the assembly in NGL viewer. |
Column description for a cluster assembly table
| Column | Annotation |
|---|---|
| PdbID | PDB code |
| AssemID | The integer number of an assembly |
| CfGroupID | The string ID for a crystal form |
| Symmetry | The symmetry of an assembly, e.g. C1 (asymmetric), Cn (cyclic symmetry, n>=2), Dn (dihedral symmetry) |
| Stoichiometry | The stoichiometry of an assembly, e.g. A (monomer), A4 (homo tetramer), AB (hetero dimer), A3B3 (hetero hexamer) |
| (UniProt)n | The component of UniProts with copy numbers |
| PDBBAID | The biological assemblies that are same as this assembly |
| PISABAID | The PISA biological assembly that is same as this assembly |
| IsEppicBio | Whether this assembly is marked as "bio" in EPPIC |
| (EntityID)n | The component of PDB entity IDs with copy numbers |
| (AsymID)n | The component of asymmetric chain IDs with copy numbers |