Protein Common Interface Database

The Pfams interacting with at least one peptide

PPBD: Professional Peptide Binding Domain.
A PPBD is defined as a Pfam with at least 3 UniProts which bind peptides in the PDB

#Pfams = 1881
PFAM ID	Pfam Accession	Description	#Entry	#IEntry	Is PPBD
14-3-3	PF00244	14-3-3 protein	419	429	Y
2Fe-2S_thioredx	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin	26	57	N
2-Hacid_dh_C	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	2	1	N
2OG-FeII_Oxy_3	PF13640	2OG-Fe(II) oxygenase superfamily	15	15	N
2-oxoacid_dh	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	1	1	N
53-BP1_Tudor	PF09038	Tumour suppressor p53-binding protein-1 Tudor	9	9	N
7kD_DNA_binding	PF02294	7kD DNA-binding domain	2	2	N
7tm_1	PF00001	7 transmembrane receptor (rhodopsin family)	187	181	N
7tm_2	PF00002	7 transmembrane receptor (Secretin family)	26	84	N
7tm_4	PF13853	Olfactory receptor	1	1	N
7TM_GPCR_Srab	PF10292	Serpentine type 7TM GPCR receptor class ab chemoreceptor	0	1	N
A2M	PF00207	Alpha-2-macroglobulin family	2	2	N
A2M_BRD	PF07703	Alpha-2-macroglobulin bait region domain	2	4	N
AA_permease_2	PF13520	Amino acid permease	1	1	N
AAA	PF00004	ATPase family associated with various cellular activities (AAA)	97	100	N
AAA_16	PF13191	AAA ATPase domain	1	1	N
AAA_2	PF07724	AAA domain (Cdc48 subfamily)	47	45	N
AAA_23	PF13476	AAA domain	1	4	N
AAA_lid_3	PF17862	AAA+ lid domain	31	2	N
ABC_membrane	PF00664	ABC transporter transmembrane region	16	15	N
ABC_tran	PF00005	ABC transporter	47	15	N
ABC_tran_CTD	PF16326	ABC transporter C-terminal domain	1	3	N
Abhydrolase_1	PF00561	alpha/beta hydrolase fold	2	2	N
Abi_HHR	PF07815	Abl-interactor HHR	1	1	N
AbrB_C	PF18277	AbrB C-terminal domain	0	1	N
AcetDehyd-dimer	PF09290	Prokaryotic acetaldehyde dehydrogenase, dimerisation	1	1	N
Acetyltransf_1	PF00583	Acetyltransferase (GNAT) family	37	34	N
Acetyltransf_10	PF13673	Acetyltransferase (GNAT) domain	1	1	N
Acetyltransf_11	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2	4	3	N
Acetyltransf_13	PF13880	ESCO1/2 acetyl-transferase	2	2	N
Acetyltransf_16	PF05301	GNAT acetyltransferase, Mec-17	2	2	N
Acetyltransf_17	PF17668	Acetyltransferase (GNAT) domain	1	1	N
Acetyltransf_7	PF13508	Acetyltransferase (GNAT) domain	0	6	N
Acetyltransf_9	PF13527	Acetyltransferase (GNAT) domain	1	1	N
AChE_tetra	PF08674	Acetylcholinesterase tetramerisation domain	2	2	N
ACR_tran	PF00873	AcrB/AcrD/AcrF family	3	8	N
ActA	PF05058	ActA Protein	2	1	N
Actin	PF00022	Actin	86	65	N
Acyl_transf_1	PF00698	Acyl transferase domain	4	4	N
Acyl-CoA_dh_M	PF02770	Acyl-CoA dehydrogenase, middle domain	1	1	N
Acyl-CoA_dh_N	PF02771	Acyl-CoA dehydrogenase, N-terminal domain	1	1	N
Adap_comp_sub	PF00928	Adaptor complexes medium subunit family	37	44	Y
Adaptin_binding	PF10199	Alpha and gamma adaptin binding protein p34	0	1	N
Adaptin_N	PF01602	Adaptin N terminal region	13	3	N
ADD_ATRX	PF17981	Cysteine Rich ADD domain	5	5	N
ADD_DNMT3	PF17980	Cysteine rich ADD domain in DNMT3	5	5	N
Adeno_hexon	PF01065	Hexon, adenovirus major coat protein, N-terminal domain	7	6	N
Adeno_hexon_C	PF03678	Hexon, adenovirus major coat protein, C-terminal domain	5	4	N
Adeno_Penton_B	PF01686	Adenovirus penton base protein	8	6	N
Adeno_PVIII	PF01310	Adenovirus hexon associated protein, protein VIII	6	3	N
AdenylateSensor	PF16579	Adenylate sensor of SNF1-like protein kinase	1	1	N
ADH_N	PF08240	Alcohol dehydrogenase GroES-like domain	1	1	N
adh_short_C2	PF13561	Enoyl-(Acyl carrier protein) reductase	4	1	N
ADH_zinc_N	PF00107	Zinc-binding dehydrogenase	1	1	N
ADP_ribosyl_GH	PF03747	ADP-ribosylglycohydrolase	4	4	N
Agenet	PF05641	Agenet domain	5	5	N
Agglutinin_C	PF18021	Agglutinin C-terminal	6	6	N
AHD	PF17793	ANC1 homology domain (AHD)	2	3	N
AIF_C	PF14721	Apoptosis-inducing factor, mitochondrion-associated, C-term	1	1	N
AKAP7_RIRII_bdg	PF10470	PKA-RI-RII subunit binding domain of A-kinase anchor protein	0	1	N
Alfin	PF12165	Alfin	3	3	N
ALIX_LYPXL_bnd	PF13949	ALIX V-shaped domain binding to HIV	6	6	N
Alk_phosphatase	PF00245	Alkaline phosphatase	7	1	N
Alpha_adaptin_C	PF02296	Alpha adaptin AP2, C-terminal domain	9	7	N
Alpha_adaptinC2	PF02883	Adaptin C-terminal domain	20	14	N
Alpha_E1_glycop	PF01589	Alphavirus E1 glycoprotein	1	2	N
Alpha_E2_glycop	PF00943	Alphavirus E2 glycoprotein	0	1	N
Alpha-amylase	PF00128	Alpha amylase, catalytic domain	2	4	N
AMA-1	PF02430	Apical membrane antigen 1	9	11	N
Amidase	PF01425	Amidase	2	2	N
Amidase_2	PF01510	N-acetylmuramoyl-L-alanine amidase	9	9	N
Amidase_3	PF01520	N-acetylmuramoyl-L-alanine amidase	0	1	N
Amino_oxidase	PF01593	Flavin containing amine oxidoreductase	28	27	N
Aminotran_1_2	PF00155	Aminotransferase class I and II	1	2	N
AMO	PF02461	Ammonia monooxygenase	5	1	N
AmoC	PF04896	Ammonia monooxygenase/methane monooxygenase, subunit C	6	6	N
AMP_N	PF05195	Aminopeptidase P, N-terminal domain	8	1	N
AMP-binding_C	PF13193	AMP-binding enzyme C-terminal domain	9	1	N
AMPKBI	PF04739	5'-AMP-activated protein kinase beta subunit, interaction domain	1	1	N
An_peroxidase	PF03098	Animal haem peroxidase	1	1	N
ANAPC10	PF03256	Anaphase-promoting complex, subunit 10 (APC10)	6	1	N
ANAPC3	PF12895	Anaphase-promoting complex, cyclosome, subunit 3	7	1	N
ANAPC4_WD40	PF12894	Anaphase-promoting complex subunit 4 WD40 domain	13	2	N
ANATO	PF01821	Anaphylotoxin-like domain	1	1	N
ANF_receptor	PF01094	Receptor family ligand binding region	10	11	N
Ank	PF00023	Ankyrin repeat	19	7	N
Ank_2	PF12796	Ankyrin repeats (3 copies)	66	46	N
Ank_4	PF13637	Ankyrin repeats (many copies)	16	15	N
Ank_5	PF13857	Ankyrin repeats (many copies)	11	3	N
Annexin	PF00191	Annexin	19	3	N
Anthrax-tox_M	PF09156	Anthrax toxin lethal factor, middle domain	3	3	N
Antimicrobial_8	PF08103	Uperin family	3	2	N
Antimicrobial20	PF08256	Aurein-like antibiotic peptide	7	1	N
APC_rep	PF18797	Adenomatous polyposis coli (APC) repeat	12	12	N
APC1_C	PF18122	Anaphase-promoting complex sub unit 1 C-terminal domain	6	2	N
APG12	PF04110	Ubiquitin-like autophagy protein Apg12	1	2	N
APG5	PF04106	Autophagy protein Apg5	1	3	N
APG6_N	PF17675	Apg6 coiled-coil region	2	2	N
APH	PF01636	Phosphotransferase enzyme family	2	2	N
Apidaecin	PF00807	Apidaecin	11	1	N
ApoC-I	PF04691	Apolipoprotein C-I (ApoC-1)	4	2	N
Apocytochr_F_C	PF01333	Apocytochrome F, C-terminal	17	18	N
Apocytochr_F_N	PF16639	Apocytochrome F, N-terminal	17	16	N
APP_amyloid	PF10515	Beta-amyloid precursor protein C-terminus	19	3	N
Arc_MA	PF19284	Arc MA domain	0	1	N
ARC6-like_IMS	PF13355	ARC6-like, IMS domain	2	2	N
Arf	PF00025	ADP-ribosylation factor family	5	1	N
ArgoMid	PF16487	Mid domain of argonaute	1	1	N
aRib	PF18938	Atypical Rib domain	0	1	N
ARID	PF01388	ARID/BRIGHT DNA binding domain	6	5	N
Arm	PF00514	Armadillo/beta-catenin-like repeat	148	163	N
Arm_3	PF16186	Atypical Arm repeat	116	11	N
Arrestin_C	PF02752	Arrestin (or S-antigen), C-terminal domain	23	18	N
Arrestin_N	PF00339	Arrestin (or S-antigen), N-terminal domain	24	20	N
ARS2	PF04959	Arsenite-resistance protein 2	1	1	N
ArsA_ATPase	PF02374	Anion-transporting ATPase	1	4	N
Arylesterase	PF01731	Arylesterase	10	10	N
ASC	PF00858	Amiloride-sensitive sodium channel	0	3	N
ASF1_hist_chap	PF04729	ASF1 like histone chaperone	16	15	N
Asp	PF00026	Eukaryotic aspartyl protease	77	79	N
Asp_Arg_Hydrox	PF05118	Aspartyl/Asparaginyl beta-hydroxylase	2	18	N
Asparaginase	PF00710	Asparaginase, N-terminal	2	1	N
Asparaginase_C	PF17763	Glutaminase/Asparaginase C-terminal domain	2	1	N
Astacin	PF01400	Astacin (Peptidase family M12A)	1	1	N
ATG11	PF10377	Autophagy-related protein 11	2	2	N
ATG14	PF10186	Vacuolar sorting 38 and autophagy-related subunit 14	4	2	N
ATG16	PF08614	Autophagy protein 16 (ATG16)	2	2	N
ATG17_like	PF04108	Autophagy protein ATG17-like domain	2	2	N
ATG7_N	PF16420	Ubiquitin-like modifier-activating enzyme ATG7 N-terminus	1	1	N
ATG8	PF02991	Autophagy protein Atg8 ubiquitin like	44	47	N
ATLF	PF07737	Anthrax toxin lethal factor, N- and C-terminal domain	16	16	N
ATP13	PF12921	Mitochondrial ATPase expression	4	4	N
ATP1G1_PLM_MAT8	PF02038	ATP1G1/PLM/MAT8 family	2	1	N
ATP-synt	PF00231	ATP synthase	10	36	N
ATP-synt_8	PF00895	ATP synthase protein 8	5	2	N
ATP-synt_A	PF00119	ATP synthase A chain	11	24	N
ATP-synt_ab	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain	11	1	N
ATP-synt_ab_N	PF02874	ATP synthase alpha/beta family, beta-barrel domain	10	1	N
ATP-synt_C	PF00137	ATP synthase subunit C	16	19	N
ATP-synt_DE	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain	4	16	N
ATP-synt_DE_N	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain	9	34	N
ATP-synt_J	PF04911	ATP synthase j chain	1	32	N
ATP-synt_S1	PF05827	Vacuolar ATP synthase subunit S1 (ATP6S1)	0	1	N
Autoind_bind	PF03472	Autoinducer binding domain	1	1	N
Avidin	PF01382	Avidin family	48	50	N
AWS	PF17907	AWS domain	7	6	N
Ax_dynein_light	PF10211	Axonemal dynein light chain	0	4	N
AXH	PF08517	Ataxin-1 and HBP1 module (AXH)	3	3	N
B	PF02216	B domain	9	3	N
B1	PF02246	Protein L b1 domain	7	7	N
B2-adapt-app_C	PF09066	Beta2-adaptin appendage, C-terminal sub-domain	6	2	N
B56	PF01603	Protein phosphatase 2A regulatory B subunit (B56 family)	9	10	N
bacHORMA_2	PF18173	Bacterial HORMA domain 2	2	2	N
BAF	PF02961	Barrier to autointegration factor	0	3	N
BaffR-Tall_bind	PF09256	BAFF-R, TALL-1 binding	3	1	N
BAH	PF01426	BAH domain	16	13	N
Bap31_Bap29_C	PF18035	Bap31/Bap29 cytoplasmic coiled-coil domain	0	1	N
BB_PF	PF18063	Beta barrel Pore-forming domain	2	2	N
BBE	PF08031	Berberine and berberine like	1	1	N
Bcl-2	PF00452	Apoptosis regulator proteins, Bcl-2 family	132	130	Y
Bcl-2_3	PF15286	Apoptosis regulator M11, B cell 2 leukaemia/lymphoma like	3	3	N
Bclx_interact	PF08945	Bcl-x interacting, BH3 domain	49	7	N
bCoV_S1_N	PF16451	Betacoronavirus-like spike glycoprotein S1, N-terminal	17	3	N
bCoV_S1_RBD	PF09408	Betacoronavirus spike glycoprotein S1, receptor binding	18	5	N
BcsB	PF03170	Bacterial cellulose synthase subunit	5	5	N
BET	PF17035	Bromodomain extra-terminal - transcription regulation	10	10	Y
Beta-APP	PF03494	Beta-amyloid peptide (beta-APP)	77	51	N
Beta-Casp	PF10996	Beta-Casp domain	1	1	N
Beta-lactamase	PF00144	Beta-lactamase	1	1	N
Beta-lactamase2	PF13354	Beta-lactamase enzyme family	2	2	N
BH3	PF15285	Beclin-1 BH3 domain, Bcl-2-interacting	11	3	N
BH4	PF02180	Bcl-2 homology region 4	39	4	N
bHLH-MYC_N	PF14215	bHLH-MYC and R2R3-MYB transcription factors N-terminal	4	6	N
BID	PF06393	BH3 interacting domain (BID)	7	2	N
Big_8	PF17961	Bacterial Ig domain	11	11	N
Big_9	PF17963	Bacterial Ig domain	3	3	N
Biopterin_H	PF00351	Biopterin-dependent aromatic amino acid hydroxylase	2	2	N
BIR	PF00653	Inhibitor of Apoptosis domain	46	46	Y
BK_channel_a	PF03493	Calcium-activated BK potassium channel alpha subunit	0	2	N
BNIP3	PF06553	BNIP3	0	3	N
Bombesin	PF02044	Bombesin-like peptide	11	1	N
BOP1NT	PF08145	BOP1NT (NUC169) domain	6	1	N
Branch	PF02485	Core-2/I-Branching enzyme	8	8	N
BRCA2	PF00634	BRCA2 repeat	2	1	N
BRCT	PF00533	BRCA1 C Terminus (BRCT) domain	26	24	Y
BRCT_2	PF16589	BRCT domain, a BRCA1 C-terminus domain	19	10	N
BRCT_3	PF18428	BRCA1 C Terminus (BRCT) domain	2	2	N
Brix	PF04427	Brix domain	5	2	N
Brme1	PF15710	Break repair meiotic recombinase recruitment factor 1	0	1	N
BrnT_toxin	PF04365	Ribonuclease toxin, BrnT, of type II toxin-antitoxin system	0	1	N
BRO1	PF03097	BRO1-like domain	19	13	Y
Bromodomain	PF00439	Bromodomain	143	126	Y
BRX	PF08381	Transcription factor regulating root and shoot growth via Pin3	2	2	N
BTB	PF00651	BTB/POZ domain	41	11	N
BTB_2	PF02214	BTB/POZ domain	4	2	N
BTD	PF09270	Beta-trefoil DNA-binding domain	8	8	N
Bud13	PF09736	Pre-mRNA-splicing factor of RES complex	1	1	N
bZIP_1	PF00170	bZIP transcription factor	4	6	N
bZIP_2	PF07716	Basic region leucine zipper	10	39	N
C1-set	PF07654	Immunoglobulin C1-set domain	2084	127	N
C2	PF00168	C2 domain	3	4	N
Ca_chan_IQ	PF08763	Voltage gated calcium channel IQ domain	11	1	N
Cadherin_4	PF17803	Bacterial cadherin-like domain	1	1	N
CAF1C_H4-bd	PF12265	Histone-binding protein RBBP4 or subunit C of CAF1 complex	22	23	N
CagS	PF16707	Cag pathogenicity island protein S of Helicobacter pylori	1	1	N
CagX	PF03524	Conjugal transfer protein	2	5	N
Calc_CGRP_IAPP	PF00214	Calcitonin / CGRP / IAPP family	19	15	N
Calici_coat	PF00915	Calicivirus coat protein	5	1	N
CaMBD	PF02888	Calmodulin binding domain	1	1	N
Candida_ALS_N	PF11766	Cell-wall agglutinin N-terminal ligand-sugar binding	4	3	N
CAP_GLY	PF01302	CAP-Gly domain	5	5	Y
CAP18_C	PF12153	LPS binding domain of CAP18 (C terminal)	12	6	N
Capsid_NCLDV	PF04451	Large eukaryotic DNA virus major capsid protein	2	2	N
Carb_anhydrase	PF00194	Eukaryotic-type carbonic anhydrase	4	4	N
Carb_kinase	PF01256	Carbohydrate kinase	21	1	N
CAS_C	PF12026	Crk-Associated Substrate C-terminal domain	3	1	N
Cation_ATPase_C	PF00689	Cation transporting ATPase, C-terminus	4	5	N
Cation_ATPase_N	PF00690	Cation transporter/ATPase, N-terminus	5	1	N
CATSPERB	PF15149	Cation channel sperm-associated protein subunit beta protein family	1	1	N
CBFD_NFYB_HMF	PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	2	3	N
CbiA	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain	1	1	N
Cbl_N	PF02262	CBL proto-oncogene N-terminal domain 1	28	28	N
Cbl_N2	PF02761	CBL proto-oncogene N-terminus, EF hand-like domain	27	4	N
Cbl_N3	PF02762	CBL proto-oncogene N-terminus, SH2-like domain	28	28	Y
CBM_14	PF01607	Chitin binding Peritrophin-A domain	3	2	N
CBM_5_12	PF02839	Carbohydrate binding domain	2	1	N
CBM32	PF18344	Carbohydrate binding module family 32	2	2	N
CBS	PF00571	CBS domain	1	1	N
CC2-LZ	PF16516	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	1	2	N
CCDC158	PF15921	Coiled-coil domain-containing protein 158	1	1	N
CCDC23	PF15674	Coiled-coil domain-containing protein 23	6	2	N
CCM2_C	PF16545	Cerebral cavernous malformation protein, harmonin-homology	1	1	N
CDC13_N	PF16853	Cell division control protein 13 N-terminus	1	1	N
CDC37_N	PF03234	Cdc37 N terminal kinase binding	2	1	N
CDC48_2	PF02933	Cell division protein 48 (CDC48), domain 2	18	6	N
CDC48_N	PF02359	Cell division protein 48 (CDC48), N-terminal domain	22	11	N
Cdc6_C	PF09079	CDC6, C terminal winged helix domain	1	1	N
CdiI	PF07262	CDI immunity protein	1	1	N
cEGF	PF12662	Complement Clr-like EGF-like	0	1	N
Cellulase	PF00150	Cellulase (glycosyl hydrolase family 5)	1	1	N
CENP-I	PF07778	Mis6	3	4	N
CENP-K	PF11802	Centromere-associated protein K	2	3	N
CENP-M	PF11111	Centromere protein M (CENP-M)	1	1	N
CENP-T_C	PF15511	Centromere kinetochore component CENP-T histone fold	3	1	N
CFTR_R	PF14396	Cystic fibrosis TM conductance regulator (CFTR), regulator domain	14	3	N
CH	PF00307	Calponin homology (CH) domain	7	5	N
ChAPs	PF09295	ChAPs (Chs5p-Arf1p-binding proteins)	1	1	N
CHCH	PF06747	CHCH domain	19	1	N
CheR	PF01739	CheR methyltransferase, SAM binding domain	1	1	N
CHIP_TPR_N	PF18391	CHIP N-terminal tetratricopeptide repeat domain	11	2	N
CHIPS	PF11434	Chemotaxis-inhibiting protein CHIPS	1	1	N
Chitin_bind_1	PF00187	Chitin recognition protein	7	2	N
Chloroa_b-bind	PF00504	Chlorophyll A-B binding protein	35	54	N
CholecysA-Rec_N	PF09193	Cholecystokinin A receptor, N-terminal	7	1	N
Choline_kinase	PF01633	Choline/ethanolamine kinase	1	1	N
Chromo	PF00385	Chromo (CHRromatin Organisation MOdifier) domain	61	60	Y
Chromo_shadow	PF01393	Chromo shadow domain	4	4	N
CI-B14_5a	PF07347	NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)	14	12	N
CID	PF04818	CID domain	20	20	N
CIS_tube	PF19266	Contractile injection system tube protein	0	1	N
CK_II_beta	PF01214	Casein kinase II regulatory subunit	3	1	N
CKS	PF01111	Cyclin-dependent kinase regulatory subunit	2	2	N
CLASP_N	PF12348	CLASP N terminal	2	2	N
Clat_adaptor_s	PF01217	Clathrin adaptor complex small chain	17	5	N
Clathrin_H_link	PF13838	Clathrin-H-link	9	1	N
Clathrin_propel	PF01394	Clathrin propeller repeat	14	13	N
Clenterotox	PF03505	Clostridium enterotoxin	1	1	N
CLIP1_ZNF	PF16641	CLIP1 zinc knuckle	1	1	N
Clp_N	PF02861	Clp amino terminal domain, pathogenicity island component	39	10	N
CLP_protease	PF00574	Clp protease	36	25	N
ClpS	PF02617	ATP-dependent Clp protease adaptor protein ClpS	11	11	N
CLTH	PF10607	CTLH/CRA C-terminal to LisH motif domain	3	3	N
CMAS	PF02353	Mycolic acid cyclopropane synthetase	1	1	N
CN_hydrolase	PF00795	Carbon-nitrogen hydrolase	2	2	N
Cna_B	PF05738	Cna protein B-type domain	2	2	N
Cnd1	PF12717	non-SMC mitotic condensation complex subunit 1	5	4	N
cNMP_binding	PF00027	Cyclic nucleotide-binding domain	4	3	N
Cnn_1N	PF07989	Centrosomin N-terminal motif 1	1	4	N
CNOT1_TTP_bind	PF16417	CCR4-NOT transcription complex subunit 1 TTP binding domain	1	1	N
CNOT11	PF10155	CCR4-NOT transcription complex subunit 11	0	1	N
COBRA1	PF06209	Cofactor of BRCA1 (COBRA1)	1	1	N
Cohesin_HEAT	PF12765	HEAT repeat associated with sister chromatid cohesion	4	1	N
Cohesin_load	PF10345	Cohesin loading factor	2	1	N
Collagen	PF01391	Collagen triple helix repeat (20 copies)	58	53	N
Collagen_bind	PF05737	Collagen binding domain	1	1	N
Collar	PF07484	Phage Tail Collar Domain	1	1	N
COMP	PF11598	Cartilage oligomeric matrix protein	1	1	N
Complex1_30kDa	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit	26	2	N
Complex1_49kDa	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit	26	17	N
Complex1_51K	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit	26	57	N
Complex1_LYR	PF05347	Complex 1 protein (LYR family)	17	4	N
ComR_TPR	PF18710	ComR tetratricopeptide	8	8	N
CorC_HlyC	PF03471	Transporter associated domain	1	1	N
Cortex-I_coil	PF09304	Cortexillin I, coiled coil	1	1	N
Couple_hipA	PF13657	HipA N-terminal domain	1	1	N
CoV_E	PF02723	Coronavirus small envelope protein E	10	1	N
CoV_nucleocap	PF00937	Coronavirus nucleocapsid	20	2	N
CoV_peptidase	PF08715	Coronavirus papain-like peptidase	4	4	N
CoV_S2	PF01601	Coronavirus spike glycoprotein S2	49	8	N
COX1	PF00115	Cytochrome C and Quinol oxidase polypeptide I	10	100	N
COX2	PF00116	Cytochrome C oxidase subunit II, periplasmic domain	9	49	N
COX2_TM	PF02790	Cytochrome C oxidase subunit II, transmembrane domain	8	17	N
COX2-transmemb	PF09125	Cytochrome C oxidase subunit II, transmembrane	0	35	N
COX3	PF00510	Cytochrome c oxidase subunit III	6	60	N
COX4	PF02936	Cytochrome c oxidase subunit IV	4	51	N
COX5A	PF02284	Cytochrome c oxidase subunit Va	3	3	N
COX6B	PF02297	Cytochrome oxidase c subunit VIb	7	1	N
COX6C	PF02937	Cytochrome c oxidase subunit VIc	3	16	N
COX7a	PF02238	Cytochrome c oxidase subunit VII	4	14	N
COX7C	PF02935	Cytochrome c oxidase subunit VIIc	4	51	N
CP12	PF02672	CP12 domain	3	1	N
Cpn60_TCP1	PF00118	TCP-1/cpn60 chaperonin family	2	3	N
CPSF_A	PF03178	CPSF A subunit region	16	11	N
Creatinase_N	PF01321	Creatinase/Prolidase N-terminal domain	4	4	N
Creb_binding	PF09030	Creb binding	0	6	N
CRF	PF00473	Corticotropin-releasing factor family	6	1	N
CRISPR_Cas2	PF09827	CRISPR associated protein Cas2	2	1	N
CRM1_C	PF08767	CRM1 C terminal	31	1	N
CRM1_repeat_3	PF18787	CRM1 / Exportin repeat 3	32	32	N
CRPV_capsid	PF08762	CRPV capsid protein like	6	8	N
Crystallin	PF00525	Alpha crystallin A chain, N terminal	5	1	N
CsgG	PF03783	Curli production assembly/transport component CsgG	1	1	N
Csm1	PF12539	Chromosome segregation protein Csm1/Pcs1	3	5	N
Csm1_N	PF18504	Csm1 N-terminal domain	0	1	N
Ctf8	PF09696	Ctf8	2	5	N
CtIP_N	PF10482	Tumour-suppressor protein CtIP N-terminal domain	0	1	N
CUB	PF00431	CUB domain	3	2	N
Cullin	PF00888	Cullin family	8	1	N
Cullin_binding	PF03556	Cullin binding	6	6	N
Cu-oxidase_2	PF07731	Multicopper oxidase	2	1	N
Cu-oxidase_3	PF07732	Multicopper oxidase	2	2	N
Cupin_2	PF07883	Cupin domain	2	2	N
Cupin_4	PF08007	Cupin superfamily protein	4	6	N
Cupin_8	PF13621	Cupin-like domain	28	28	N
Curlin_rpt	PF07012	Curlin associated repeat	4	1	N
CXCR4_N	PF12109	CXCR4 Chemokine receptor N terminal	1	2	N
Cyanophycin_syn	PF18921	Cyanophycin synthase-like N-terminal domain	6	2	N
Cyclin_C	PF02984	Cyclin, C-terminal domain	27	1	N
Cyclin_D1_bind	PF12014	Cyclin D1 binding domain	1	1	N
Cyclin_N	PF00134	Cyclin, N-terminal domain	31	28	N
Cyclotide	PF03784	Cyclotide family	47	7	N
CyRPA	PF18638	Cysteine-Rich Protective Antigen 6 bladed domain	1	1	N
Cys_knot	PF00007	Cystine-knot domain	1	1	N
Cyt_bd_oxida_I	PF01654	Cytochrome bd terminal oxidase subunit I	3	3	N
Cyt_c_ox_IV	PF12270	Cytochrome c oxidase subunit IV	1	1	N
Cytochrom_B_C	PF00032	Cytochrome b(C-terminal)/b6/petD	31	4	N
Cytochrom_B559	PF00283	Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits	75	90	N
Cytochrom_B559a	PF00284	Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit	76	98	N
Cytochrom_B562	PF07361	Cytochrome b562	23	1	N
Cytochrom_C1	PF02167	Cytochrome C1 family	12	4	N
Cytochrom_C550	PF14495	Cytochrome c-550 domain	63	66	N
Cytochrome_B	PF00033	Cytochrome b/b6/petB	29	20	N
Cytochrome_CBB3	PF13442	Cytochrome C oxidase, cbb3-type, subunit III	7	2	N
DAC	PF02457	DisA bacterial checkpoint controller nucleotide-binding	1	1	N
Dala_Dala_lig_C	PF07478	D-ala D-ala ligase C-terminus	2	1	N
Dala_Dala_lig_N	PF01820	D-ala D-ala ligase N-terminus	2	2	N
DAP10	PF07213	DAP10 membrane protein	0	4	N
DAP3	PF10236	Mitochondrial ribosomal death-associated protein 3	22	1	N
Daxx	PF03344	Daxx N-terminal Rassf1C-interacting domain	3	2	N
Dcc1	PF09724	Sister chromatid cohesion protein Dcc1	2	5	N
DCD	PF06559	2'-deoxycytidine 5'-triphosphate deaminase (DCD)	1	1	N
DCP1	PF06058	Dcp1-like decapping family	4	8	N
DCP2	PF05026	Dcp2, box A domain	3	4	N
DCX	PF03607	Doublecortin	1	1	N
DEAD	PF00270	DEAD/DEAH box helicase	13	4	N
DED	PF01335	Death effector domain	3	2	N
Defensin_1	PF00323	Mammalian defensin	23	15	N
Defensin_2	PF01097	Arthropod defensin	1	2	N
Defensin_beta	PF00711	Beta defensin	1	10	N
Desulfoferrod_N	PF06397	Desulfoferrodoxin, N-terminal domain	0	4	N
DHC_N1	PF08385	Dynein heavy chain, N-terminal region 1	3	2	N
DHR-2	PF06920	Dock homology region 2	1	1	N
DIM1	PF02966	Mitosis protein DIM1	0	1	N
Dip	PF17679	gp37/Dip protein	1	1	N
DIRP	PF06584	DIRP	0	1	N
DivIC	PF04977	Septum formation initiator	1	1	N
DivIVA	PF05103	DivIVA protein	3	3	N
DLIC	PF05783	Dynein light intermediate chain (DLIC)	5	1	N
DNA_gyraseB_C	PF00986	DNA gyrase B subunit, carboxyl terminus	1	1	N
DNA_ligase_A_N	PF04675	DNA ligase N terminus	3	3	N
DNA_methylase	PF00145	C-5 cytosine-specific DNA methylase	2	3	N
DNA_pack_C	PF02499	Probable DNA packing protein, C-terminus	1	1	N
DNA_photolyase	PF00875	DNA photolyase	3	1	N
DNA_pol_A	PF00476	DNA polymerase family A	1	1	N
DNA_pol_B	PF00136	DNA polymerase family B	2	4	N
DNA_pol_B_exo1	PF03104	DNA polymerase family B, exonuclease domain	1	3	N
DNA_pol_E_B	PF04042	DNA polymerase alpha/epsilon subunit B	1	1	N
DNA_pol3_beta	PF00712	DNA polymerase III beta subunit, N-terminal domain	44	3	N
DNA_pol3_beta_2	PF02767	DNA polymerase III beta subunit, central domain	44	44	N
DNA_pol3_beta_3	PF02768	DNA polymerase III beta subunit, C-terminal domain	44	44	N
DNA_pol3_chi	PF04364	DNA polymerase III chi subunit, HolC	1	1	N
DNA_pol3_gamma3	PF12169	DNA polymerase III subunits gamma and tau domain III	1	1	N
DNA_PPF	PF02916	DNA polymerase processivity factor	2	2	N
DNA_topoisoIV	PF00521	DNA gyrase/topoisomerase IV, subunit A	2	1	N
DnaB	PF00772	DnaB-like helicase N terminal domain	1	1	N
DnaJ	PF00226	DnaJ domain	6	2	N
DnaJ_C	PF01556	DnaJ C terminal domain	4	5	N
DNAPKcs_CC5	PF19704	DNA-PKcs, CC5	1	1	N
DNApol3-delta_C	PF09115	DNA polymerase III, delta subunit, C terminal	1	1	N
dNK	PF01712	Deoxynucleoside kinase	3	57	N
DNMT1-RFD	PF12047	Cytosine specific DNA methyltransferase replication foci domain	1	2	N
DotD	PF16816	DotD protein	7	7	N
DotU	PF09850	Type VI secretion system protein DotU	1	1	N
DP	PF08781	Transcription factor DP	0	1	N
DP-EP	PF08985	DP-EP family	6	1	N
Dpp_8_9_N	PF19520	Dipeptidyl peptidase 8 and 9 N-terminal	5	5	N
DPPIV_N	PF00930	Dipeptidyl peptidase IV (DPP IV) N-terminal region	13	12	N
DPPIV_rep	PF18811	Dipeptidyl peptidase IV (DPP IV) low complexity region	6	2	N
Dpy19	PF10034	Q-cell neuroblast polarisation	2	2	N
Dpy-30	PF05186	Dpy-30 motif	6	3	N
DREV	PF05219	DREV methyltransferase	5	5	N
Drf_FH3	PF06367	Diaphanous FH3 Domain	2	2	N
Drf_GBD	PF06371	Diaphanous GTPase-binding Domain	2	2	N
DSBA	PF01323	DSBA-like thioredoxin domain	5	5	N
DsbB	PF02600	Disulfide bond formation protein DsbB	1	1	N
DSPc	PF00782	Dual specificity phosphatase, catalytic domain	8	5	N
DSPn	PF14671	Dual specificity protein phosphatase, N-terminal half	5	5	N
DUF1039	PF06287	Protein of unknown function (DUF1039)	0	1	N
DUF1077	PF06417	Protein of unknown function (DUF1077)	3	3	N
DUF1241	PF06840	Protein of unknown function (DUF1241)	4	5	N
DUF1323	PF07037	Putative transcription regulator (DUF1323)	0	1	N
DUF1325	PF07039	SGF29 tudor-like domain	8	8	N
DUF1681	PF07933	Protein of unknown function (DUF1681)	2	1	N
DUF1778	PF08681	Protein of unknown function (DUF1778)	0	1	N
DUF1897	PF09005	Domain of unknown function (DUF1897)	1	1	N
DUF1968	PF09291	Domain of unknown function (DUF1968)	210	1	N
DUF2121	PF09894	Uncharacterized protein conserved in archaea (DUF2121)	1	1	N
DUF2312	PF10073	Uncharacterized protein conserved in bacteria (DUF2312)	2	5	N
DUF2383	PF09537	Domain of unknown function (DUF2383)	0	3	N
DUF257	PF03192	Pyrococcus protein of unknown function, DUF257	1	1	N
DUF2778	PF10908	Protein of unknown function (DUF2778)	3	3	N
DUF3152	PF11350	Protein of unknown function (DUF3152)	5	5	N
DUF3215	PF11503	Protein of unknown function (DUF3215)	0	1	N
DUF3361	PF11841	Domain of unknown function (DUF3361)	1	1	N
DUF3381	PF11861	Domain of unknown function (DUF3381)	3	1	N
DUF3385	PF11865	Domain of unknown function (DUF3385)	0	1	N
DUF3458_C	PF17432	Domain of unknown function (DUF3458_C) ARM repeats	1	1	N
DUF382	PF04037	Domain of unknown function (DUF382)	1	1	N
DUF4379	PF14311	Probable Zinc-ribbon domain	6	1	N
DUF4441	PF14536	Domain of unknown function (DUF4441)	1	1	N
DUF4461	PF14688	Domain of unknown function (DUF4461)	3	3	N
DUF4927	PF16279	Domain of unknown function (DUF4927)	133	7	N
DUF4951	PF16309	Domian of unknown function (DUF4951)	1	1	N
DUF5089	PF17002	Domain of unknown function (DUF5089)	1	5	N
DUF5455	PF17537	Family of unknown function (DUF5455)	0	1	N
DUF5517	PF17639	Family of unknown function (DUF5517)	0	2	N
DUF5595	PF18077	Domain of unknown function (DUF5595)	1	1	N
DUF5604	PF18300	Domain of unknown function (DUF5604)	6	1	N
DUF5838	PF19156	Family of unknown function (DUF5838)	3	3	N
DUF5908	PF19265	Family of unknown function (DUF5908)	0	1	N
DUF592	PF04574	Protein of unknown function (DUF592)	3	1	N
DUF5950	PF19375	Family of unknown function (DUF5950)	2	2	N
DUF5973	PF19398	Family of unknown function (DUF5973)	7	2	N
DUF5979	PF19407	Domain of unknown function (DUF5979)	2	2	N
DUF692	PF05114	Protein of unknown function (DUF692)	2	2	N
DUF903	PF06004	Bacterial protein of unknown function (DUF903)	1	1	N
dUTPase	PF00692	dUTPase	3	3	N
Dynamin_M	PF01031	Dynamin central region	1	1	N
Dynein_light	PF01221	Dynein light chain type 1	27	26	Y
E1_dh	PF00676	Dehydrogenase E1 component	3	3	N
E1-E2_ATPase	PF00122	E1-E2 ATPase	24	20	N
E2F_CC-MB	PF16421	E2F transcription factor CC-MB domain	0	1	N
EABR	PF12180	TSG101 and ALIX binding domain of CEP55	4	4	N
EB1	PF03271	EB1-like C-terminal motif	4	4	N
EB1_binding	PF05937	EB-1 Binding Domain	4	1	N
Ebola_NP	PF05505	Ebola nucleoprotein	7	3	N
ECH_2	PF16113	Enoyl-CoA hydratase/isomerase	6	3	N
Ectatomin	PF06457	Ectatomin	0	1	N
EFG_C	PF00679	Elongation factor G C-terminus	73	2	N
EFG_III	PF14492	Elongation Factor G, domain III	69	5	N
EFG_IV	PF03764	Elongation factor G, domain IV	67	7	N
EF-hand_1	PF00036	EF hand	27	35	Y
EF-hand_14	PF17959	EF-hand domain	1	1	N
EF-hand_2	PF09068	EF hand	1	1	N
EF-hand_3	PF09069	EF-hand	1	1	N
EF-hand_4	PF12763	Cytoskeletal-regulatory complex EF hand	7	6	N
EF-hand_5	PF13202	EF hand	2	2	N
EF-hand_6	PF13405	EF-hand domain	3	4	N
EF-hand_7	PF13499	EF-hand domain pair	166	166	Y
EF-hand_8	PF13833	EF-hand domain pair	10	11	Y
EFhand_Ca_insen	PF08726	Ca2+ insensitive EF hand	2	2	N
EFP_N	PF08207	Elongation factor P (EF-P) KOW-like domain	8	1	N
eIF2_C	PF09173	Initiation factor eIF2 gamma, C terminal	20	3	N
eIF2A	PF08662	Eukaryotic translation initiation factor eIF2A	11	1	N
eIF-3c_N	PF05470	Eukaryotic translation initiation factor 3 subunit 8 N-terminus	13	2	N
eIF3g	PF12353	Eukaryotic translation initiation factor 3 subunit G	11	1	N
EIID-AGA	PF03613	PTS system mannose/fructose/sorbose family IID component	0	3	N
EII-Sor	PF03609	PTS system sorbose-specific iic component	0	3	N
ELMO_CED12	PF04727	ELMO/CED-12 family	1	1	N
EMC1_C	PF07774	ER membrane protein complex subunit 1, C-terminal	4	1	N
EMC3_TMCO1	PF01956	Integral membrane protein EMC3/TMCO1-like	5	2	N
EMC6	PF07019	EMC6	6	2	N
EMP24_GP25L	PF01105	emp24/gp25L/p24 family/GOLD	2	1	N
Endothelin	PF00322	Endothelin family	14	2	N
Enkurin	PF13864	Calmodulin-binding	0	1	N
Enolase_C	PF00113	Enolase, C-terminal TIM barrel domain	4	3	N
Enolase_N	PF03952	Enolase, N-terminal domain	5	3	N
EnY2	PF10163	Transcription factor e(y)2	2	3	N
EphA2_TM	PF14575	Ephrin type-A receptor 2 transmembrane domain	2	3	N
Ephrin_lbd	PF01404	Ephrin receptor ligand binding domain	13	13	N
EpoR_lig-bind	PF09067	Erythropoietin receptor, ligand binding	2	2	N
ER	PF01133	Enhancer of rudimentary	0	2	N
ER_lumen_recept	PF00810	ER lumen protein retaining receptor	5	5	N
ERAP1_C	PF11838	ERAP1-like C-terminal domain	15	11	N
ERCC3_RAD25_C	PF16203	ERCC3/RAD25/XPB C-terminal helicase	9	8	N
eRF1_2	PF03464	eRF1 domain 2	20	7	N
ERM	PF00769	Ezrin/radixin/moesin family	3	1	N
ERp29	PF07749	Endoplasmic reticulum protein ERp29, C-terminal domain	0	2	N
EspG	PF06872	EspG protein	1	1	N
ESSS	PF10183	ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)	6	12	N
EST1	PF10374	Telomerase activating protein Est1	1	1	N
EST1_DNA_bind	PF10373	Est1 DNA/RNA binding domain	1	1	N
ETC_C1_NDUFA4	PF04800	ETC complex I subunit conserved region	24	54	N
Ets	PF00178	Ets-domain	2	2	N
Ets1_N_flank	PF19525	Ets1 N-terminal flanking region of Ets domain	2	2	N
ExbD	PF02472	Biopolymer transport protein ExbD/TolR	2	1	N
Exo_endo_phos	PF03372	Endonuclease/Exonuclease/phosphatase family	7	4	N
Exo70	PF03081	Exo70 exocyst complex subunit	2	2	N
Exonuc_X-T_C	PF08411	Exonuclease C-terminal	1	1	N
Exportin-5	PF19273	Exportin-5 family	2	2	N
EZH2_N	PF18601	EZH2 N-terminal domain	4	3	N
EzrA	PF06160	Septation ring formation regulator, EzrA	0	2	N
F_actin_cap_B	PF01115	F-actin capping protein, beta subunit	16	10	N
F1F0-ATPsyn_F	PF10791	Mitochondrial F1-F0 ATP synthase subunit F of fungi	1	7	N
F5_F8_type_C	PF00754	F5/8 type C domain	10	8	N
F-actin_cap_A	PF01267	F-actin capping protein alpha subunit	21	6	N
FAD_binding_4	PF01565	FAD binding domain	2	1	N
FAD_binding_7	PF03441	FAD binding domain of DNA photolyase	3	3	N
FAD_binding_9	PF08021	Siderophore-interacting FAD-binding domain	1	1	N
FAM181	PF15238	FAM181	3	2	N
Fanconi_A_N	PF15865	Fanconi anaemia group A protein N terminus	0	3	N
Fasciclin	PF02469	Fasciclin domain	4	2	N
FAT	PF02259	FAT domain	4	3	N
FATC	PF02260	FATC domain	2	1	N
FBXL18_C	PF19729	F-box/LRR-repeat protein 18 C-terminal	8	7	N
Fe_dep_repress	PF01325	Iron dependent repressor, N-terminal DNA binding domain	0	2	N
FemAB	PF02388	FemAB family	7	7	N
FeoB_N	PF02421	Ferrous iron transport protein B	1	1	N
Fer2_3	PF13085	2Fe-2S iron-sulfur cluster binding domain	0	1	N
Fer4_17	PF13534	4Fe-4S dicluster domain	2	1	N
Fer4_24	PF18109	Ferredoxin I 4Fe-4S cluster domain	0	1	N
Fer4_8	PF13183	4Fe-4S dicluster domain	0	1	N
FERM_C	PF09380	FERM C-terminal PH-like domain	14	13	Y
FERM_F1	PF18379	FERM F1 ubiquitin-like domain	0	2	N
FERM_F2	PF18377	FERM F2 acyl-CoA binding protein-like domain	0	2	N
FERM_M	PF00373	FERM central domain	24	13	N
FERM_N	PF09379	FERM N-terminal domain	14	7	N
Ferritin	PF00210	Ferritin-like domain	1	4	N
FGE-sulfatase	PF03781	Sulfatase-modifying factor enzyme 1	13	13	N
FHA	PF00498	FHA domain	31	31	Y
FHA_2	PF17913	FHA domain	3	3	N
Fib_alpha	PF08702	Fibrinogen alpha/beta chain family	26	3	N
Fibrinogen_C	PF00147	Fibrinogen beta and gamma chains, C-terminal globular domain	26	26	N
Fibritin_C	PF07921	Fibritin C-terminal region	8	5	N
Fic	PF02661	Fic/DOC family	2	1	N
Filament	PF00038	Intermediate filament protein	0	1	N
Filamin	PF00630	Filamin/ABP280 repeat	8	10	N
Filo_VP35	PF02097	Filoviridae VP35	4	1	N
Fimbrial	PF00419	Fimbrial protein	16	10	N
FimH_man-bind	PF09160	FimH, mannose binding	10	9	N
Fip1	PF05182	Fip1 motif	0	1	N
Fis1_TPR_N	PF14852	Fis1 N-terminal tetratricopeptide repeat	0	1	N
FKBP_C	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase	21	17	N
Flavi_glycoprot	PF00869	Flavivirus glycoprotein, central and dimerisation domains	8	1	N
Flavi_NS2B	PF01002	Flavivirus non-structural protein NS2B	24	22	N
Flavi_propep	PF01570	Flavivirus polyprotein propeptide	1	1	N
Flavoprotein	PF02441	Flavoprotein	1	1	N
Flg_bb_rod	PF00460	Flagella basal body rod protein	4	4	N
Flg_bbr_C	PF06429	Flagellar basal body rod FlgEFG protein C-terminal	4	4	N
FliG_N	PF14842	FliG N-terminal domain	0	1	N
FliMN_C	PF01052	Type III flagellar switch regulator (C-ring) FliN C-term	1	1	N
FliT	PF05400	Flagellar protein FliT	1	1	N
Flo11	PF10182	Flo11 domain	1	1	N
Flu_B_M2	PF04772	Influenza B matrix protein 2 (BM2)	0	3	N
Flu_M2	PF00599	Influenza Matrix protein (M2)	32	25	N
Flu_NP	PF00506	Influenza virus nucleoprotein	33	5	N
Flu_PA	PF00603	Influenza RNA-dependent RNA polymerase subunit PA	20	11	N
Flu_PB1	PF00602	Influenza RNA-dependent RNA polymerase subunit PB1	14	3	N
Flu_PB2	PF00604	Influenza RNA-dependent RNA polymerase subunit PB2	12	3	N
FmiP_Thoc5	PF09766	Fms-interacting protein/Thoc5	0	1	N
Fn_bind	PF02986	Fibronectin binding repeat	3	2	N
fn1	PF00039	Fibronectin type I domain	8	8	N
fn2	PF00040	Fibronectin type II domain	1	1	N
fn3	PF00041	Fibronectin type III domain	44	14	N
Focal_AT	PF03623	Focal adhesion targeting region	12	12	N
FPN1	PF06963	Ferroportin1 (FPN1)	2	2	N
F-protein	PF00469	Negative factor, (F-Protein) or Nef	44	19	N
FR47	PF08445	FR47-like protein	1	1	N
FragX_IP	PF05994	Cytoplasmic Fragile-X interacting family	1	1	N
FRB_dom	PF08771	FKBP12-rapamycin binding domain	2	1	N
Fringe	PF02434	Fringe-like	1	1	N
FtsA	PF14450	Cell division protein FtsA	1	2	N
FtsJ	PF01728	FtsJ-like methyltransferase	7	1	N
FtsK_SpoIIIE	PF01580	FtsK/SpoIIIE family	2	1	N
FtsQ	PF03799	Cell division protein FtsQ	1	2	N
FtsX	PF02687	FtsX-like permease family	5	2	N
FtsZ_C	PF12327	FtsZ family, C-terminal domain	1	1	N
Fun_ATP-synt_8	PF05933	Fungal ATP synthase protein 8 (A6L)	6	5	N
Fungal_lectin	PF07938	Fungal fucose-specific lectin	1	1	N
Furin-like	PF00757	Furin-like cysteine rich region	37	2	N
Fusion_gly	PF00523	Fusion glycoprotein F0	6	1	N
FUT8_N_cat	PF19745	Alpha-(1,6)-fucosyltransferase N- and catalytic domains	2	2	N
FXMRP1_C_core	PF12235	Fragile X-related 1 protein core C terminal	6	1	N
Gag_p17	PF00540	gag gene protein p17 (matrix protein)	18	1	N
Gag_p24	PF00607	gag protein p24 N-terminal domain	24	18	N
Gag_p24_C	PF19317	Gag protein p24 C-terminal domain	43	16	N
Gag_spuma	PF03276	Spumavirus gag protein	2	1	N
GAIN	PF16489	GPCR-Autoproteolysis INducing (GAIN) domain	2	1	N
Gal11_ABD1	PF18535	Gal11 activator-binding domain (ABD1)	0	1	N
Gal-bind_lectin	PF00337	Galactoside-binding lectin	2	2	N
Gallidermin	PF02052	Gallidermin	3	1	N
G-alpha	PF00503	G-protein alpha subunit	133	13	N
Gamma_PGA_hydro	PF05908	Poly-gamma-glutamate hydrolase	1	1	N
Gamma-thionin	PF00304	Gamma-thionin family	18	8	N
GAS	PF13851	Growth-arrest specific micro-tubule binding	1	2	N
GATA	PF00320	GATA zinc finger	1	4	N
GBP_C	PF02841	Guanylate-binding protein, C-terminal domain	0	1	N
GCP_N_terminal	PF17681	Gamma tubulin complex component N-terminal	1	4	N
Gelsolin	PF00626	Gelsolin repeat	20	5	N
Gemin6	PF06372	Gemin6 protein	0	1	N
Gemin7	PF11095	Gem-associated protein 7 (Gemin7)	0	1	N
Geminin	PF07412	Geminin	1	1	N
GerE	PF00196	Bacterial regulatory proteins, luxR family	2	1	N
GET4	PF04190	Golgi to ER traffic protein 4	1	1	N
Get5_C	PF18514	Get5 C-terminal domain	0	1	N
GFO_IDH_MocA	PF01408	Oxidoreductase family, NAD-binding Rossmann fold	2	2	N
GFO_IDH_MocA_C	PF02894	Oxidoreductase family, C-terminal alpha/beta domain	2	2	N
GFP	PF01353	Green fluorescent protein	0	1	N
G-gamma	PF00631	GGL domain	24	1	N
Gin	PF10764	Inhibitor of sigma-G Gin	0	1	N
GIT_SHD	PF08518	Spa2 homology domain (SHD) of GIT	1	1	N
GIT1_C	PF12205	G protein-coupled receptor kinase-interacting protein 1 C term	3	3	N
GLE1	PF07817	GLE1-like protein	0	4	N
GLEYA	PF10528	GLEYA domain	1	1	N
Gln-synt_C	PF00120	Glutamine synthetase, catalytic domain	6	6	N
Gln-synt_N	PF03951	Glutamine synthetase, beta-Grasp domain	6	6	N
Glucosaminidase	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	1	1	N
Glutaredoxin	PF00462	Glutaredoxin	3	2	N
Glyco_hydro_1	PF00232	Glycosyl hydrolase family 1	2	3	N
Glyco_hydro_18	PF00704	Glycosyl hydrolases family 18	18	18	N
Glyco_hydro_20	PF00728	Glycosyl hydrolase family 20, catalytic domain	1	1	N
Glyco_hydro_30	PF02055	Glycosyl hydrolase family 30 TIM-barrel domain	1	1	N
Glyco_hydro_76	PF03663	Glycosyl hydrolase family 76	1	1	N
Glyco_tran_28_C	PF04101	Glycosyltransferase family 28 C-terminal domain	4	3	N
Glyco_trans_A_1	PF09318	Glycosyl transferase 1 domain A	5	5	N
Glyco_transf_24	PF18404	Glucosyltransferase 24	0	7	N
Glyco_transf_28	PF03033	Glycosyltransferase family 28 N-terminal domain	4	3	N
Glyco_transf_41	PF13844	Glycosyl transferase family 41	29	29	N
Glyco_transf_90	PF05686	Glycosyl transferase family 90	0	2	N
Glycogen_syn	PF05693	Glycogen synthase	2	2	N
Glycolytic	PF00274	Fructose-bisphosphate aldolase class-I	4	5	N
Glycophorin_A	PF01102	Glycophorin A	3	3	N
Glycos_trans_3N	PF02885	Glycosyl transferase family, helical bundle domain	2	2	N
Glycos_transf_2	PF00535	Glycosyl transferase family 2	18	12	N
Glycos_transf_3	PF00591	Glycosyl transferase family, a/b domain	1	1	N
GMP_PDE_delta	PF05351	GMP-PDE, delta subunit	9	9	N
GNAT_C	PF18164	GNAT-like C-terminal domain	3	3	N
GnRH	PF00446	Gonadotropin-releasing hormone	3	1	N
GNT-I	PF03071	GNT-I family	1	1	N
GntR	PF00392	Bacterial regulatory proteins, gntR family	1	2	N
GOLD_2	PF13897	Golgi-dynamics membrane-trafficking	5	5	N
Gp_dh_C	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	3	3	N
Gp_dh_N	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	3	3	N
GP120	PF00516	Envelope glycoprotein GP120	95	22	N
Gp23	PF07068	Major capsid protein Gp23	1	1	N
GP41	PF00517	Retroviral envelope protein	103	34	N
gp45-slide_C	PF09116	gp45 sliding clamp, C terminal	2	2	N
G-patch_2	PF12656	G-patch domain	0	1	N
GPS	PF01825	GPCR proteolysis site, GPS, motif	3	1	N
GramPos_pilinD1	PF16555	Gram-positive pilin subunit D1, N-terminal domain	1	1	N
GRAS	PF03514	GRAS domain family	1	2	N
GRASP55_65	PF04495	GRASP55/65 PDZ-like domain	4	4	N
GRIM-19	PF06212	GRIM-19 protein	6	1	N
GSDH	PF07995	Glucose / Sorbosone dehydrogenase	1	1	N
GSHPx	PF00255	Glutathione peroxidase	3	3	N
GST_C	PF00043	Glutathione S-transferase, C-terminal domain	3	2	N
GST_C_3	PF14497	Glutathione S-transferase, C-terminal domain	1	1	N
GST_N	PF02798	Glutathione S-transferase, N-terminal domain	5	5	N
GTP_EFTU	PF00009	Elongation factor Tu GTP binding domain	153	15	N
GTP_EFTU_D2	PF03144	Elongation factor Tu domain 2	118	10	N
GTP_EFTU_D3	PF03143	Elongation factor Tu C-terminal domain	28	2	N
Guanylate_kin	PF00625	Guanylate kinase	20	17	N
GYF	PF02213	GYF domain	4	4	N
HA2	PF04408	Helicase associated domain (HA2)	3	5	N
Hairy_orange	PF07527	Hairy Orange	0	1	N
Harakiri	PF15196	Activator of apoptosis harakiri	2	1	N
Haspin_kinase	PF12330	Haspin like kinase domain	4	3	N
HAT	PF02184	HAT (Half-A-TPR) repeat	2	1	N
HAT_KAT11	PF08214	Histone acetylation protein	1	1	N
Hat1_N	PF10394	Histone acetyl transferase HAT1 N-terminus	3	3	N
HAV_VP	PF12944	Hepatitis A virus viral protein VP	0	1	N
HCV_NS1	PF01560	Hepatitis C virus non-structural protein E2/NS1	27	1	N
HCV_NS4a	PF01006	Hepatitis C virus non-structural protein NS4a	51	25	N
HEAT	PF02985	HEAT repeat	10	4	N
HEAT_2	PF13646	HEAT repeats	39	11	N
HEAT_EZ	PF13513	HEAT-like repeat	20	24	N
Helicase_C	PF00271	Helicase conserved C-terminal domain	29	14	N
Helicase_C_3	PF13625	Helicase conserved C-terminal domain	9	8	N
Hemagglutinin	PF00509	Haemagglutinin	44	8	N
Hemopexin	PF00045	Hemopexin	3	3	N
Hepatitis_core	PF00906	Hepatitis core antigen	11	5	N
Herpes_glycoH_C	PF17488	Herpesvirus glycoprotein H C-terminal domain	0	3	N
Herpes_glycop_H	PF02489	Herpesvirus glycoprotein H main domain	1	3	N
Herpes_PAP	PF03325	Herpesvirus polymerase accessory protein	1	1	N
Herpes_TAF50	PF03326	Herpesvirus transcription activation factor (transactivator)	1	1	N
Herpes_UL49_2	PF04823	Herpesvirus UL49 tegument protein	1	1	N
Herpes_UL6	PF01763	Herpesvirus UL6 like	1	1	N
HetR_C	PF18460	Heterocyst differentiation regulator C-terminal Hood domain	1	1	N
Hex_IIIa	PF02455	Hexon-associated protein (IIIa)	6	1	N
Hexapep	PF00132	Bacterial transferase hexapeptide (six repeats)	21	6	N
HHH_5	PF14520	Helix-hairpin-helix domain	3	1	N
HipA_C	PF07804	HipA-like C-terminal domain	1	1	N
HipN	PF18253	Hsp70-interacting protein N N-terminal domain	0	1	N
HIRA_B	PF09453	HIRA B motif	1	1	N
His_Phos_1	PF00300	Histidine phosphatase superfamily (branch 1)	1	1	N
Hist_deacetyl	PF00850	Histone deacetylase domain	26	26	N
Histone	PF00125	Core histone H2A/H2B/H3/H4	454	37	N
Histone_H2A_C	PF16211	C-terminus of histone H2A	25	16	N
Histone_HNS	PF00816	H-NS histone family	0	2	N
HIT	PF01230	HIT domain	1	1	N
Hit1_C	PF18268	Hit1 C-terminal	0	1	N
HLH	PF00010	Helix-loop-helix DNA-binding domain	1	4	N
HMGL-like	PF00682	HMGL-like	1	1	N
HNF-1_N	PF04814	Hepatocyte nuclear factor 1 (HNF-1), N terminus	0	4	N
HOIP-UBA	PF16678	HOIP UBA domain pair	1	1	N
Hom_end_hint	PF05203	Hom_end-associated Hint	1	3	N
Homeodomain	PF00046	Homeodomain	16	2	N
Homez	PF11569	Homeodomain leucine-zipper encoding, Homez	1	1	N
HOOK_N	PF19047	HOOK domain	1	1	N
HORMA	PF02301	HORMA domain	24	25	Y
Hormone_2	PF00123	Peptide hormone	40	2	N
Hormone_3	PF00159	Pancreatic hormone peptide	9	1	N
Hormone_4	PF00220	Neurohypophysial hormones, N-terminal Domain	7	1	N
Hormone_5	PF00184	Neurohypophysial hormones, C-terminal Domain	2	2	N
Hormone_recep	PF00104	Ligand-binding domain of nuclear hormone receptor	881	835	N
HRM	PF02793	Hormone receptor domain	40	98	Y
HSA	PF07529	HSA	3	1	N
HSBP1	PF06825	Heat shock factor binding protein 1	1	1	N
HSM3_C	PF18794	DNA mismatch repair protein HSM3, C terminal domain	1	1	N
HSP20	PF00011	Hsp20/alpha crystallin family	16	11	N
HSP70	PF00012	Hsp70 protein	45	46	Y
HTH_11	PF08279	HTH domain	0	1	N
HTH_3	PF01381	Helix-turn-helix	11	3	N
HTH_8	PF02954	Bacterial regulatory protein, Fis family	1	1	N
HTH_9	PF08221	RNA polymerase III subunit RPC82 helix-turn-helix domain	0	1	N
HTH_Crp_2	PF13545	Crp-like helix-turn-helix domain	1	1	N
I_LWEQ	PF01608	I/LWEQ domain	2	1	N
IATP	PF04568	Mitochondrial ATPase inhibitor, IATP	7	1	N
IBB	PF01749	Importin beta binding domain	82	1	N
IBN_N	PF03810	Importin-beta N-terminal domain	51	2	N
ICAP-1_inte_bdg	PF10480	Beta-1 integrin binding protein	2	2	N
IF4E	PF01652	Eukaryotic initiation factor 4E	28	31	N
IFNGR1	PF07140	Interferon gamma receptor (IFNGR1)	0	2	N
ig	PF00047	Immunoglobulin domain	30	14	N
Ig_2	PF13895	Immunoglobulin domain	16	5	N
Ig_3	PF13927	Immunoglobulin domain	11	5	N
Ig_6	PF18452	Immunoglobulin domain	1	1	N
IKKbetaNEMObind	PF12179	I-kappa-kinase-beta NEMO binding domain	0	1	N
Il13Ra_Ig	PF18001	Interleukin-13 receptor subunit alpha Ig-like domain	1	1	N
IL17	PF06083	Interleukin-17	6	6	N
IL23	PF16649	Interleukin 23 subunit alpha	1	1	N
IL6Ra-bind	PF09240	Interleukin-6 receptor alpha chain, binding	1	1	N
IL8	PF00048	Small cytokines (intecrine/chemokine), interleukin-8 like	7	9	N
Ilar_coat	PF01787	Ilarvirus coat protein	1	1	N
ILEI	PF15711	Interleukin-like EMT inducer	2	2	N
IMD	PF08397	IRSp53/MIM homology domain	1	1	N
IMPa_N_2	PF18650	Immunomodulating metalloprotease N-terminal domain	1	1	N
ImpE	PF07024	ImpE protein	1	1	N
Importin_rep_4	PF18808	Importin repeat	4	3	N
Importin_rep_5	PF18816	Importin repeat	5	4	N
Importin_rep_6	PF18829	Importin repeat 6	5	4	N
IN_DBD_C	PF00552	Integrase DNA binding domain	0	1	N
IncE	PF17627	Inclusion membrane protein E	6	4	N
Inhibitor_I67	PF11405	Bromelain inhibitor VI	2	2	N
Inhibitor_I9	PF05922	Peptidase inhibitor I9	19	2	N
Inovirus_G7P_2	PF19978	Tail virion protein G7P	0	1	N
Insulin	PF00049	Insulin/IGF/Relaxin family	405	18	N
Insulin_TMD	PF17870	Insulin receptor trans-membrane segment	26	3	N
Integrase_Zn	PF02022	Integrase Zinc binding domain	1	3	N
Integrin_b_cyt	PF08725	Integrin beta cytoplasmic domain	13	9	N
Integrin_B_tail	PF07965	Integrin beta tail domain	2	3	N
Integrin_beta	PF00362	Integrin beta chain VWA domain	23	25	N
INTS2	PF14750	Integrator complex subunit 2	2	2	N
InvH	PF04741	InvH outer membrane lipoprotein	2	2	N
Ion_trans	PF00520	Ion transport protein	32	16	N
Ion_trans_2	PF07885	Ion channel	0	3	N
iPGM_N	PF06415	BPG-independent PGAM N-terminus (iPGM_N)	5	5	N
IQ	PF00612	IQ calmodulin-binding motif	30	4	N
IRF-3	PF10401	Interferon-regulatory factor 3	4	6	N
IRK_C	PF17655	Inward rectifier potassium channel C-terminal domain	1	1	N
IRS	PF02174	PTB domain (IRS-1 type)	15	16	Y
Iso_dh	PF00180	Isocitrate/isopropylmalate dehydrogenase	2	1	N
IspD	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	1	1	N
Ist1	PF03398	Regulator of Vps4 activity in the MVB pathway	1	1	N
ITAM	PF02189	Immunoreceptor tyrosine-based activation motif	11	2	N
JAB	PF01398	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	18	11	N
Jacalin	PF01419	Jacalin-like lectin domain	32	32	N
JHD	PF17811	Jumonji helical domain	14	12	N
JmjC	PF02373	JmjC domain, hydroxylase	46	40	N
KaiA	PF07688	KaiA C-terminal domain	1	3	N
KASH	PF10541	Nuclear envelope localisation domain	1	1	N
KASH_CCD	PF14662	Coiled-coil region of CCDC155 or KASH	0	2	N
Katanin_con80	PF13925	con80 domain of Katanin	2	2	N
Kazal_1	PF00050	Kazal-type serine protease inhibitor domain	3	1	N
Kazal_2	PF07648	Kazal-type serine protease inhibitor domain	1	1	N
KCNQ_channel	PF03520	KCNQ voltage-gated potassium channel	1	1	N
KdpA	PF03814	Potassium-transporting ATPase A subunit	19	17	N
Kelch_1	PF01344	Kelch motif	49	49	N
Kelch_3	PF13415	Galactose oxidase, central domain	7	7	N
Kelch_4	PF13418	Galactose oxidase, central domain	5	5	N
Keratin_2_head	PF16208	Keratin type II head	3	2	N
ketoacyl-synt	PF00109	Beta-ketoacyl synthase, N-terminal domain	1	1	N
KH_1	PF00013	KH domain	4	1	N
KH_2	PF07650	KH domain	763	4	N
KH_6	PF15985	KH domain	0	2	N
KH_8	PF17903	Krr1 KH1 domain	2	1	N
KilA-N	PF04383	KilA-N domain	3	3	N
KIND	PF16474	Kinase non-catalytic C-lobe domain	2	2	N
Kinesin	PF00225	Kinesin motor domain	2	2	N
KIX	PF02172	KIX domain	7	10	N
Knl1_RWD_C	PF18210	Knl1 RWD C-terminal domain	1	1	N
KOW	PF00467	KOW motif	750	8	N
Kringle	PF00051	Kringle domain	3	4	N
Ku	PF02735	Ku70/Ku80 beta-barrel domain	7	2	N
Ku_C	PF03730	Ku70/Ku80 C-terminal arm	9	1	N
Ku_N	PF03731	Ku70/Ku80 N-terminal alpha/beta domain	14	11	N
Kunitz_BPTI	PF00014	Kunitz/Bovine pancreatic trypsin inhibitor domain	13	2	N
L27	PF02828	L27 domain	0	1	N
Lactamase_B	PF00753	Metallo-beta-lactamase superfamily	5	3	N
Lactamase_B_6	PF16661	Metallo-beta-lactamase superfamily domain	2	1	N
Lactonase	PF10282	Lactonase, 7-bladed beta-propeller	5	3	N
Laminin_EGF	PF00053	Laminin EGF domain	1	1	N
LANC_like	PF05147	Lanthionine synthetase C-like protein	1	1	N
Lant_dehydr_C	PF14028	Lantibiotic biosynthesis dehydratase C-term	1	2	N
Lant_dehydr_N	PF04738	Lantibiotic dehydratase, N terminus	0	1	N
Lantibiotic_a	PF14867	Lantibiotic alpha	4	1	N
LBR_tudor	PF09465	Lamin-B receptor of TUDOR domain	1	1	N
Ldl_recept_a	PF00057	Low-density lipoprotein receptor domain class A	3	1	N
Ldl_recept_b	PF00058	Low-density lipoprotein receptor repeat class B	3	6	N
Lebercilin	PF15619	Ciliary protein causing Leber congenital amaurosis disease	0	1	N
Lectin_C	PF00059	Lectin C-type domain	12	5	N
Lectin_legB	PF00139	Legume lectin domain	14	14	N
LEDGF	PF11467	Lens epithelium-derived growth factor (LEDGF)	2	2	N
Leu_Phe_trans	PF03588	Leucyl/phenylalanyl-tRNA protein transferase	2	2	N
Leuk-A4-hydro_C	PF09127	Leukotriene A4 hydrolase, C-terminal	3	3	N
Leukocidin	PF07968	Leukocidin/Hemolysin toxin family	2	2	N
LHC	PF00556	Antenna complex alpha/beta subunit	3	38	N
LIAS_N	PF16881	N-terminal domain of lipoyl synthase of Radical_SAM family	1	1	N
LID	PF17916	LIM interaction domain (LID)	0	2	N
LIM	PF00412	LIM domain	4	4	N
LIN52	PF10044	Retinal tissue protein	2	1	N
LIN9_C	PF19438	LIN9 C-terminal	0	2	N
Linocin_M18	PF04454	Encapsulating protein for peroxidase	4	4	N
Lipocalin	PF00061	Lipocalin / cytosolic fatty-acid binding protein family	3	3	N
Lipoprotein_1	PF00820	Borrelia lipoprotein	1	1	N
LMWPc	PF01451	Low molecular weight phosphotyrosine protein phosphatase	3	1	N
LMWSLP_N	PF12211	Low molecular weight S layer protein N terminal	0	2	N
Lon_C	PF05362	Lon protease (S16) C-terminal proteolytic domain	17	5	N
LON_substr_bdg	PF02190	ATP-dependent protease La (LON) substrate-binding domain	1	1	N
LPP	PF04728	Lipoprotein leucine-zipper	4	4	N
LptD_N	PF03968	LptA/(LptD N-terminal domain) LPS transport protein	9	9	N
LRR_4	PF12799	Leucine Rich repeats (2 copies)	12	9	N
LRR_8	PF13855	Leucine rich repeat	32	28	N
LRRNT_2	PF08263	Leucine rich repeat N-terminal domain	24	9	N
LSDAT_euk	PF18139	SLOG in TRPM	11	11	N
LSM14	PF12701	Scd6-like Sm domain	1	1	N
LUC7	PF03194	LUC7 N_terminus	0	1	N
Lys	PF00062	C-type lysozyme/alpha-lactalbumin family	6	1	N
LysM	PF01476	LysM domain	6	3	N
LysR_substrate	PF03466	LysR substrate binding domain	2	2	N
M11L	PF11099	Apoptosis regulator M11L like	12	12	N
M60-like_N	PF17291	N-terminal domain of M60-like peptidases	3	1	N
MA3	PF02847	MA3 domain	3	1	N
MacB_PCD	PF12704	MacB-like periplasmic core domain	5	5	N
MAD	PF05557	Mitotic checkpoint protein	3	3	N
Mad3_BUB1_I	PF08311	Mad3/BUB1 homology region 1	4	1	N
Mad3_BUB1_II	PF08171	Mad3/BUB1 homology region 2	1	1	N
MAGE	PF01454	MAGE family	11	1	N
MAJIN	PF15077	Membrane-anchored junction protein	0	2	N
Mak10	PF04112	Mak10 subunit, NatC N(alpha)-terminal acetyltransferase	2	2	N
Malectin_like	PF12819	Malectin-like domain	1	1	N
MA-Mit	PF09245	Mycoplasma arthritidis-derived mitogen	3	3	N
MarR	PF01047	MarR family	1	1	N
MarR_2	PF12802	MarR family	1	1	N
MAS20	PF02064	MAS20 protein import receptor	8	8	N
MatE	PF01554	MatE	3	3	N
MATH	PF00917	MATH domain	54	54	Y
MazE_antitoxin	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	1	1	N
MBF1	PF08523	Multiprotein bridging factor 1	0	2	N
MBOAT	PF03062	MBOAT, membrane-bound O-acyltransferase family	4	4	N
MBT	PF02820	mbt repeat	10	11	Y
Mcl1_mid	PF12341	Minichromosome loss protein, Mcl1, middle region	5	1	N
MCM6_C	PF18263	MCM6 C-terminal winged-helix domain	3	1	N
MCPVI	PF02993	Minor capsid protein VI	13	2	N
Med1	PF10744	Mediator of RNA polymerase II transcription subunit 1	3	3	N
Med14	PF08638	Mediator complex subunit MED14	4	1	N
Med17	PF10156	Subunit 17 of Mediator complex	8	5	N
Med18	PF09637	Med18 protein	7	1	N
Med22	PF06179	Surfeit locus protein 5 subunit 22 of Mediator complex	3	1	N
Med26	PF08711	TFIIS helical bundle-like domain	7	5	N
Med28	PF11594	Mediator complex subunit 28	3	1	N
Med31	PF05669	SOH1	7	3	N
Med4	PF10018	Vitamin-D-receptor interacting Mediator subunit 4	7	2	N
Med6	PF04934	MED6 mediator sub complex component	8	4	N
Med7	PF05983	MED7 protein	7	3	N
Med8	PF10232	Mediator of RNA polymerase II transcription complex subunit 8	8	5	N
Melittin	PF01372	Melittin	8	2	N
Menin	PF05053	Menin	5	5	N
MerR-DNA-bind	PF09278	MerR, DNA binding	2	1	N
Metalloenzyme	PF01676	Metalloenzyme superfamily	5	5	N
Metallopep	PF12044	Putative peptidase family	2	2	N
Metallophos	PF00149	Calcineurin-like phosphoesterase	34	37	N
Metallophos_2	PF12850	Calcineurin-like phosphoesterase superfamily domain	8	8	N
Methyltrans_Mon	PF14314	Virus-capping methyltransferase	0	1	N
Methyltransf_25	PF13649	Methyltransferase domain	21	18	N
Methyltransf_31	PF13847	Methyltransferase domain	1	1	N
Methyltransf_5	PF01795	MraW methylase family	3	2	N
Methyltransf_PK	PF05891	AdoMet dependent proline di-methyltransferase	18	18	N
MG1	PF17790	Macroglobulin domain MG1	2	2	N
MG2	PF01835	MG2 domain	2	2	N
MG4	PF17789	Macroglobulin domain MG4	2	2	N
MH2	PF03166	MH2 domain	3	3	N
MHC_I	PF00129	Class I Histocompatibility antigen, domains alpha 1 and 2	1206	1194	N
MHC_I_3	PF16497	MHC-I family domain	3	2	N
MHC_II_alpha	PF00993	Class II histocompatibility antigen, alpha domain	187	178	N
MHC_II_beta	PF00969	Class II histocompatibility antigen, beta domain	179	177	N
MIB_HERC2	PF06701	Mib_herc2	2	2	N
MIF4G	PF02854	MIF4G domain	5	3	N
MIF4G_like	PF09088	MIF4G like	1	2	N
MIF4G_like_2	PF09090	MIF4G like	1	2	N
MIT	PF04212	MIT (microtubule interacting and transport) domain	18	14	N
MitMem_reg	PF13012	Maintenance of mitochondrial structure and function	17	5	N
Mlh1_C	PF16413	DNA mismatch repair protein Mlh1 C-terminus	2	2	N
Mltc_N	PF11873	Membrane-bound lytic murein transglycosylase C, N-terminal domain	1	1	N
MmlI	PF09448	Methylmuconolactone methyl-isomerase	1	1	N
MMR_HSR1	PF01926	50S ribosome-binding GTPase	10	1	N
MMS1_N	PF10433	Mono-functional DNA-alkylating methyl methanesulfonate N-term	14	11	N
Mo25	PF08569	Mo25-like	3	3	N
Mob1_phocein	PF03637	Mob1/phocein family	6	6	N
MobC	PF05713	Bacterial mobilisation protein (MobC)	0	2	N
MoCF_biosynth	PF00994	Probable molybdopterin binding domain	10	10	N
Mod_r	PF07200	Modifier of rudimentary (Mod(r)) protein	1	1	N
MoeA_C	PF03454	MoeA C-terminal region (domain IV)	11	11	N
MoeA_N	PF03453	MoeA N-terminal region (domain I and II)	10	10	N
Molybdopterin	PF00384	Molybdopterin oxidoreductase	24	52	N
Mononeg_RNA_pol	PF00946	Mononegavirales RNA dependent RNA polymerase	3	1	N
Monooxygenase_B	PF04744	Monooxygenase subunit B protein	5	1	N
Morc6_S5	PF17942	Morc6 ribosomal protein S5 domain 2-like	1	2	N
MORN	PF02493	MORN repeat	4	4	N
MotA_ExbB	PF01618	MotA/TolQ/ExbB proton channel family	2	2	N
Motile_Sperm	PF00635	MSP (Major sperm protein) domain	6	5	N
MOZ_SAS	PF01853	MOZ/SAS family	3	9	N
MRAP	PF15183	Melanocortin-2 receptor accessory protein family	1	1	N
MRG	PF05712	MRG	1	2	N
mRNA_cap_C	PF03919	mRNA capping enzyme, C-terminal domain	4	1	N
mRNA_cap_enzyme	PF01331	mRNA capping enzyme, catalytic domain	4	3	N
mRNA_decap_C	PF16741	mRNA-decapping enzyme C-terminus	0	1	N
mRNA_triPase	PF02940	mRNA capping enzyme, beta chain	1	1	N
MRP-L27	PF09809	Mitochondrial ribosomal protein L27	18	3	N
MRP-L28	PF09812	Mitochondrial ribosomal protein L28	31	1	N
MRP-L47	PF06984	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)	41	6	N
MRP-S28	PF10213	Mitochondrial ribosomal subunit protein	26	13	N
MRP-S31	PF15433	Mitochondrial 28S ribosomal protein S31	18	11	N
MRP-S33	PF08293	Mitochondrial ribosomal subunit S27	21	11	N
MSA_2	PF00985	Merozoite Surface Antigen 2 (MSA-2) family	1	1	N
MscL	PF01741	Large-conductance mechanosensitive channel, MscL	1	1	N
MSP	PF01716	Manganese-stabilising protein / photosystem II polypeptide	52	1	N
Mst1_SARAH	PF11629	C terminal SARAH domain of Mst1	7	1	N
Mt_ATP-synt_B	PF05405	Mitochondrial ATP synthase B chain precursor (ATP-synt_B)	9	40	N
Mt_ATP-synt_D	PF05873	ATP synthase D chain, mitochondrial (ATP5H)	15	6	N
Mtf2_C	PF14061	Polycomb-like MTF2 factor 2	1	1	N
MtrA	PF04208	Tetrahydromethanopterin S-methyltransferase, subunit A	1	1	N
MTS	PF05175	Methyltransferase small domain	1	2	N
Mucin15	PF15672	Cell-membrane associated Mucin15	0	4	N
muHD	PF10291	Muniscin C-terminal mu homology domain	3	3	N
MUN	PF06292	MUN domain	1	1	N
Mur_ligase_M	PF08245	Mur ligase middle domain	8	4	N
Muramidase	PF11860	N-acetylmuramidase	1	1	N
MxiM	PF11441	Pilot protein MxiM	1	1	N
Myb_DNA-binding	PF00249	Myb-like DNA-binding domain	38	2	N
Myc-LZ	PF02344	Myc leucine zipper domain	7	2	N
Myosin_N	PF02736	Myosin N-terminal SH3-like domain	1	1	N
Myosin-VI_CBD	PF16521	Myosin VI cargo binding domain	1	1	N
N_Asn_amidohyd	PF14736	Protein N-terminal asparagine amidohydrolase	2	2	N
N2227	PF07942	N2227-like protein	2	1	N
Na_K-ATPase	PF00287	Sodium / potassium ATPase beta chain	2	2	N
Nab2	PF11517	Nuclear abundant poly(A) RNA-bind protein 2 (Nab2)	1	1	N
Nab6_mRNP_bdg	PF10567	RNA-recognition motif	9	8	N
NAD_binding_1	PF00175	Oxidoreductase NAD-binding domain	1	1	N
NAD_binding_10	PF13460	NAD(P)H-binding	4	1	N
NAD_binding_11	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	3	3	N
NADH_dehy_S2_C	PF06444	NADH dehydrogenase subunit 2 C-terminus	3	15	N
NADH5_C	PF06455	NADH dehydrogenase subunit 5 C-terminus	10	19	N
NADHdh	PF00146	NADH dehydrogenase	16	5	N
NADHdh_A3	PF14987	NADH dehydrogenase 1 alpha subcomplex subunit 3	5	1	N
NAGidase	PF07555	beta-N-acetylglucosaminidase	13	11	N
NAP	PF00956	Nucleosome assembly protein (NAP)	2	1	N
NapD	PF03927	NapD protein	0	1	N
NARP1	PF12569	NMDA receptor-regulated protein 1	7	3	N
NAT_N	PF18082	N-acyltransferase N-terminal domain	3	3	N
NatB_MDM20	PF09797	N-acetyltransferase B complex (NatB) non catalytic subunit	6	1	N
NB-ARC	PF00931	NB-ARC domain	4	4	N
Nckap1	PF09735	Membrane-associated apoptosis protein	1	1	N
NDNF_C	PF19433	Neuron-derived Neurotrophic Factor C-terminal	1	1	N
NDUF_B12	PF08122	NADH-ubiquinone oxidoreductase B12 subunit family	6	7	N
NDUF_B5	PF09781	NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit	2	5	N
NDUF_B7	PF05676	NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)	9	7	N
NDUF_B8	PF05821	NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)	2	2	N
NDUF_C2	PF06374	NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2)	9	86	N
NDUFB10	PF10249	NADH-ubiquinone oxidoreductase subunit 10	4	5	N
Ndufs5	PF10200	NADH:ubiquinone oxidoreductase, NDUFS5-15kDa	8	6	N
Neisseria_PilC	PF05567	Neisseria PilC beta-propeller domain	1	1	N
NEMO	PF11577	NF-kappa-B essential modulator NEMO	0	1	N
Neprosin	PF03080	Neprosin	1	1	N
Neur_chan_LBD	PF02931	Neurotransmitter-gated ion-channel ligand binding domain	28	17	N
Neur_chan_memb	PF02932	Neurotransmitter-gated ion-channel transmembrane region	8	1	N
Nha1_C	PF08619	Alkali metal cation/H+ antiporter Nha1 C terminus	1	1	N
NHR2	PF08788	NHR2 domain like	1	1	N
Nic96	PF04097	Nup93/Nic96	5	5	N
NIF	PF03031	NLI interacting factor-like phosphatase	6	6	N
Nitrophorin	PF02087	Nitrophorin	1	1	N
NMDAR2_C	PF10565	N-methyl D-aspartate receptor 2B3 C-terminus	10	6	N
NmrA	PF05368	NmrA-like family	5	3	N
NMT	PF01233	Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain	21	21	N
NMT_C	PF02799	Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain	21	21	N
NNMT_PNMT_TEMT	PF01234	NNMT/PNMT/TEMT family	4	4	N
NO_synthase	PF02898	Nitric oxide synthase, oxygenase domain	1	1	N
NOG1	PF06858	Nucleolar GTP-binding protein 1 (NOG1)	5	1	N
Not1	PF04054	CCR4-Not complex component, Not1	1	1	N
NPL4	PF05021	NPL4 family	2	2	N
NRIP1_repr_2	PF15688	Nuclear receptor-interacting protein 1 repression 2	9	1	N
Nsp1_C	PF05064	Nsp1-like C-terminal region	6	2	N
Nt_Gln_amidase	PF09764	N-terminal glutamine amidase	1	1	N
NTF2	PF02136	Nuclear transport factor 2 (NTF2) domain	10	11	N
NUC194	PF08163	NUC194 domain	1	1	N
Nucleopor_Nup85	PF07575	Nup85 Nucleoporin	6	1	N
Nucleoporin_C	PF03177	Non-repetitive/WGA-negative nucleoporin C-terminal	7	6	N
Nucleoporin_FG2	PF15967	Nucleoporin FG repeated region	1	3	N
Nucleoporin_N	PF08801	Nup133 N terminal like	6	6	N
Nucleoporin2	PF04096	Nucleoporin autopeptidase	1	3	N
NUDIX	PF00293	NUDIX domain	21	3	N
Nup188	PF10487	Nucleoporin subcomplex protein binding to Pom34	5	5	N
Nup188_C	PF18378	Nuclear pore protein NUP188 C-terminal domain	5	1	N
Nup192	PF11894	Nuclear pore complex scaffold, nucleoporins 186/192/205	6	8	N
Nup54	PF13874	Nucleoporin complex subunit 54	6	6	N
Nup54_C	PF18437	Nup54 C-terminal interacting domain	0	5	N
NYD-SP28_assoc	PF14775	Sperm tail C-terminal domain	0	1	N
OB_NTP_bind	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold	3	5	N
OCRE	PF17780	OCRE domain	3	1	N
O-FucT	PF10250	GDP-fucose protein O-fucosyltransferase	5	5	N
Omp85	PF01103	Omp85 superfamily domain	14	11	N
OmpA	PF00691	OmpA family	9	9	N
Omptin	PF01278	Omptin family	1	1	N
Op_neuropeptide	PF08035	Opioids neuropeptide	0	1	N
ORC_WH_C	PF18137	Origin recognition complex winged helix C-terminal	1	1	N
ORC2	PF04084	Origin recognition complex subunit 2	1	2	N
ORC3_N	PF07034	Origin recognition complex (ORC) subunit 3 N-terminus	1	1	N
ORC5_C	PF14630	Origin recognition complex (ORC) subunit 5 C-terminus	1	2	N
ORMDL	PF04061	ORMDL family	0	4	N
OSCP	PF00213	ATP synthase delta (OSCP) subunit	10	6	N
Osmo_CC	PF08946	Osmosensory transporter coiled coil	0	1	N
OSR1_C	PF12202	Oxidative-stress-responsive kinase 1 C-terminal domain	2	2	N
OST3_OST6	PF04756	OST3 / OST6 family, transporter family	10	8	N
OTU	PF02338	OTU-like cysteine protease	1	1	N
Oxidored_q2	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L	12	15	N
Oxidored_q3	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6	10	7	N
Oxidored_q4	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3	7	1	N
Oxidored_q5_N	PF01059	NADH-ubiquinone oxidoreductase chain 4, amino terminus	9	18	N
Oxidored_q6	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit	26	1	N
P_proprotein	PF01483	Proprotein convertase P-domain	20	1	N
P34-Arc	PF04045	Arp2/3 complex, 34 kD subunit p34-Arc	4	1	N
P3A	PF08727	Poliovirus 3A protein like	2	2	N
p450	PF00067	Cytochrome P450	6	3	N
P53	PF00870	P53 DNA-binding domain	12	1	N
P53_tetramer	PF07710	P53 tetramerisation motif	0	21	N
P66_CC	PF16563	Coiled-coil and interaction region of P66A and P66B with MBD2	0	1	N
PA	PF02225	PA domain	5	5	N
PABP	PF00658	Poly-adenylate binding protein, unique domain	16	16	N
Pacifastin_I	PF05375	Pacifastin inhibitor (LCMII)	0	4	N
PAD	PF03068	Protein-arginine deiminase (PAD)	5	4	N
PAE	PF03283	Pectinacetylesterase	2	2	N
PAH	PF02671	Paired amphipathic helix repeat	6	8	N
PA-IIL	PF07472	Fucose-binding lectin II (PA-IIL)	30	30	N
PA-IL	PF07828	PA-IL-like protein	4	3	N
PALB2_WD40	PF16756	Partner and localizer of BRCA2 WD40 domain	6	1	N
PALP	PF00291	Pyridoxal-phosphate dependent enzyme	19	19	N
PAM2	PF07145	Ataxin-2 C-terminal region	10	1	N
PAN_1	PF00024	PAN domain	4	5	N
PAN_2	PF08276	PAN-like domain	0	1	N
PAP_RNA-bind	PF04926	Poly(A) polymerase predicted RNA binding domain	1	1	N
PAP1	PF08601	Transcription factor PAP1	1	1	N
ParA	PF10609	NUBPL iron-transfer P-loop NTPase	1	1	N
Paramyx_P_V_C	PF03210	Paramyxovirus P/V phosphoprotein C-terminal	1	3	N
Paramyxo_ncap	PF00973	Paramyxovirus nucleocapsid protein	15	4	N
Parathyroid	PF01279	Parathyroid hormone family	7	1	N
ParE_toxin	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	2	1	N
PARP	PF00644	Poly(ADP-ribose) polymerase catalytic domain	0	1	N
PAS_11	PF14598	PAS domain	2	5	N
PAS_3	PF08447	PAS fold	0	1	N
PAT1	PF09770	Topoisomerase II-associated protein PAT1	3	3	N
Paxillin	PF03535	Paxillin family	7	1	N
PBP_dimer	PF03717	Penicillin-binding Protein dimerisation domain	4	3	N
PC_rep	PF01851	Proteasome/cyclosome repeat	7	1	N
PC4	PF02229	Transcriptional Coactivator p15 (PC4)	1	1	N
PCI	PF01399	PCI domain	18	1	N
PCMT	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)	1	1	N
PCNA_C	PF02747	Proliferating cell nuclear antigen, C-terminal domain	44	45	N
PCNA_N	PF00705	Proliferating cell nuclear antigen, N-terminal domain	44	45	N
PCRF	PF03462	PCRF domain	27	1	N
PCuAC	PF04314	Copper chaperone PCu(A)C	1	1	N
PD40	PF07676	WD40-like Beta Propeller Repeat	6	2	N
PDEase_I	PF00233	3'5'-cyclic nucleotide phosphodiesterase	3	3	N
PDGF	PF00341	PDGF/VEGF domain	8	9	N
PDZ	PF00595	PDZ domain	218	209	Y
PDZ_2	PF13180	PDZ domain	37	35	Y
PDZ_3	PF17815	PDZ domain	1	1	N
PDZ_5	PF17817	PDZ domain	1	1	N
PDZ_6	PF17820	PDZ domain	42	30	N
Pectate_lyase_2	PF06917	Periplasmic pectate lyase	1	1	N
Pectate_lyase22	PF14583	Oligogalacturonate lyase	4	1	N
PemK_toxin	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	4	6	N
Pep_deformylase	PF01327	Polypeptide deformylase	12	11	N
Peptidase_A4	PF01828	Peptidase A4 family	3	3	N
Peptidase_A6	PF01829	Peptidase A6 family	0	1	N
Peptidase_A8	PF01252	Signal peptidase (SPase) II	3	3	N
Peptidase_C1	PF00112	Papain family cysteine protease	39	39	N
Peptidase_C10	PF01640	Peptidase C10 family	1	1	N
Peptidase_C107	PF17222	Viral cysteine endopeptidase C107	1	1	N
Peptidase_C11	PF03415	Clostripain family	3	3	N
Peptidase_C12	PF01088	Ubiquitin carboxyl-terminal hydrolase, family 1	1	1	N
Peptidase_C13	PF01650	Peptidase C13 family	8	8	N
Peptidase_C14	PF00656	Caspase domain	181	181	N
Peptidase_C2	PF00648	Calpain family cysteine protease	4	4	N
Peptidase_C3	PF00548	3C cysteine protease (picornain 3C)	8	8	N
Peptidase_C30	PF05409	Coronavirus endopeptidase C30	84	84	N
Peptidase_C37	PF05416	Southampton virus-type processing peptidase	5	5	N
Peptidase_C39	PF03412	Peptidase C39 family	2	2	N
Peptidase_C4	PF00863	Peptidase family C4	3	3	N
Peptidase_C5	PF00770	Adenovirus endoprotease	10	10	N
Peptidase_C50	PF03568	Peptidase family C50	3	3	N
Peptidase_M1	PF01433	Peptidase family M1 domain	20	20	N
Peptidase_M1_N	PF17900	Peptidase M1 N-terminal domain	20	20	N
Peptidase_M10	PF00413	Matrixin	28	25	N
Peptidase_M13	PF01431	Peptidase family M13	1	1	N
Peptidase_M13_N	PF05649	Peptidase family M13	1	1	N
Peptidase_M14	PF00246	Zinc carboxypeptidase	4	5	N
Peptidase_M16	PF00675	Insulinase (Peptidase family M16)	39	35	N
Peptidase_M16_C	PF05193	Peptidase M16 inactive domain	39	46	N
Peptidase_M16_M	PF16187	Middle or third domain of peptidase_M16	20	15	N
Peptidase_M17	PF00883	Cytosol aminopeptidase family, catalytic domain	2	2	N
Peptidase_M2	PF01401	Angiotensin-converting enzyme	11	11	N
Peptidase_M23	PF01551	Peptidase family M23	3	2	N
Peptidase_M24	PF00557	Metallopeptidase family M24	23	11	N
Peptidase_M27	PF01742	Clostridial neurotoxin zinc protease	20	17	N
Peptidase_M28	PF04389	Peptidase family M28	8	5	N
Peptidase_M3	PF01432	Peptidase family M3	3	3	N
Peptidase_M4	PF01447	Thermolysin metallopeptidase, catalytic domain	3	3	N
Peptidase_M4_C	PF02868	Thermolysin metallopeptidase, alpha-helical domain	3	3	N
Peptidase_M41	PF01434	Peptidase family M41	2	1	N
Peptidase_M42	PF05343	M42 glutamyl aminopeptidase	1	1	N
Peptidase_M43	PF05572	Pregnancy-associated plasma protein-A	2	2	N
Peptidase_M48	PF01435	Peptidase family M48	1	1	N
Peptidase_M49	PF03571	Peptidase family M49	8	8	N
Peptidase_M60	PF13402	Peptidase M60, enhancin and enhancin-like	3	2	N
Peptidase_M9	PF01752	Collagenase	6	6	N
Peptidase_M9_N	PF08453	Peptidase family M9 N-terminal	4	3	N
Peptidase_Prp	PF04327	Cysteine protease Prp	2	2	N
Peptidase_S10	PF00450	Serine carboxypeptidase	2	2	N
Peptidase_S11	PF00768	D-alanyl-D-alanine carboxypeptidase	1	1	N
Peptidase_S21	PF00716	Assemblin (Peptidase family S21)	3	3	N
Peptidase_S26	PF10502	Signal peptidase, peptidase S26	6	6	N
Peptidase_S29	PF02907	Hepatitis C virus NS3 protease	58	44	N
Peptidase_S3	PF00944	Alphavirus core protein	0	1	N
Peptidase_S41	PF03572	Peptidase family S41	7	7	N
Peptidase_S46	PF10459	Peptidase S46	6	6	N
Peptidase_S64	PF08192	Peptidase family S64	19	19	N
Peptidase_S66	PF02016	LD-carboxypeptidase N-terminal domain	1	1	N
Peptidase_S66C	PF17676	LD-carboxypeptidase C-terminal domain	1	1	N
Peptidase_S7	PF00949	Peptidase S7, Flavivirus NS3 serine protease	28	30	N
Peptidase_S8	PF00082	Subtilase family	87	87	N
Peptidase_S9	PF00326	Prolyl oligopeptidase family	31	36	N
Peptidase_S9_N	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain	17	22	N
Peripla_BP_2	PF01497	Periplasmic binding protein	2	2	N
peroxidase	PF00141	Peroxidase	1	1	N
Peroxin-3	PF04882	Peroxin-3	1	1	N
Pertussis_S2S3	PF02918	Pertussis toxin, subunit 2 and 3, C-terminal domain	1	1	N
PetG	PF02529	Cytochrome B6-F complex subunit 5	17	18	N
PetL	PF05115	Cytochrome B6-F complex subunit VI (PetL)	15	14	N
PetM	PF08041	PetM family of cytochrome b6f complex subunit 7	17	18	N
Pex14_N	PF04695	Pex14 N-terminal domain	3	3	N
PG_binding_1	PF01471	Putative peptidoglycan binding domain	11	1	N
PGA_cap	PF09587	Bacterial capsule synthesis protein PGA_cap	1	2	N
PH	PF00169	PH domain	1	2	N
PH_TFIIH	PF08567	TFIIH p62 subunit, N-terminal domain	16	9	N
Phage_Capsid_P3	PF09018	P3 major capsid protein	1	1	N
Phage_Coat_B	PF05356	Inovirus Coat protein B	0	2	N
Phage_coatGP8	PF19199	Phage major coat protein, Gp8	0	4	N
Phage_F	PF02305	Capsid protein (F protein)	1	3	N
Phage_GPD	PF05954	Phage tail baseplate hub (GPD)	0	1	N
Phage_lysozyme	PF00959	Phage lysozyme	10	3	N
Phage_prot_Gp6	PF05133	Phage portal protein, SPP1 Gp6-like	1	1	N
PHAT	PF09246	PHAT	2	2	N
PHD	PF00628	PHD-finger	135	122	Y
PHD_2	PF13831	PHD-finger	3	1	N
PhdYeFM_antitox	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	1	1	N
Phospholamban	PF04272	Phospholamban	5	2	N
Phospholip_A2_1	PF00068	Phospholipase A2	30	30	N
Phosphorylase	PF00343	Carbohydrate phosphorylase	1	1	N
Photo_RC	PF00124	Photosynthetic reaction centre protein	78	91	N
Phycobilisome	PF00502	Phycobilisome protein	4	2	N
PI3_PI4_kinase	PF00454	Phosphatidylinositol 3- and 4-kinase	3	2	N
PI3Ka	PF00613	Phosphoinositide 3-kinase family, accessory domain (PIK domain)	1	1	N
Pico_P1A	PF02226	Picornavirus coat protein (VP4)	19	21	N
Pico_P2A	PF00947	Picornavirus core protein 2A	2	2	N
PID	PF00640	Phosphotyrosine interaction domain (PTB/PID)	17	20	Y
PIEZO	PF15917	Piezo	1	1	N
Piezo_RRas_bdg	PF12166	Piezo non-specific cation channel, R-Ras-binding domain	1	1	N
PIG-L	PF02585	GlcNAc-PI de-N-acetylase	1	1	N
PIH1	PF08190	PIH1 N-terminal domain	3	3	N
Pih1_fungal_CS	PF18482	Fungal Pih1 CS domain	2	1	N
Pilin_N	PF07790	Archaeal Type IV pilin, N-terminal	1	1	N
PilM_2	PF11104	Type IV pilus assembly protein PilM;	1	1	N
PilO	PF04350	Pilus assembly protein, PilO	0	1	N
PilS	PF08805	PilS N terminal	1	1	N
PIN	PF01850	PIN domain	3	3	N
Piwi	PF02171	Piwi domain	1	1	N
PK_Tyr_Ser-Thr	PF07714	Protein tyrosine and serine/threonine kinase	38	31	N
PKcGMP_CC	PF16808	Coiled-coil N-terminus of cGMP-dependent protein kinase	4	1	N
PKHD_C	PF18331	PKHD-type hydroxylase C-terminal domain	1	1	N
PKI	PF02827	cAMP-dependent protein kinase inhibitor	247	1	N
pKID	PF02173	pKID domain	3	1	N
Pkinase	PF00069	Protein kinase domain	516	502	N
Pkinase_C	PF00433	Protein kinase C terminal domain	28	19	N
PLA2_inh	PF02988	Phospholipase A2 inhibitor	4	4	N
Plexin_cytopl	PF08337	Plexin cytoplasmic RasGAP domain	1	1	N
Plk4_PB1	PF18190	Polo-like Kinase 4 Polo Box 1	1	1	N
Plk4_PB2	PF18409	Polo-like Kinase 4 Polo Box 2	1	1	N
Plug	PF07715	TonB-dependent Receptor Plug Domain	20	15	N
Plug_translocon	PF10559	Plug domain of Sec61p	22	12	N
Plus-3	PF03126	Plus-3 domain	1	1	N
PmbA_TldD_C	PF19289	PmbA/TldA metallopeptidase C-terminal domain	4	4	N
PmbA_TldD_M	PF19290	PmbA/TldA metallopeptidase central domain	4	4	N
PMC2NT	PF08066	PMC2NT (NUC016) domain	2	1	N
PMT	PF02366	Dolichyl-phosphate-mannose-protein mannosyltransferase	1	1	N
PMT_4TMC	PF16192	C-terminal four TMM region of protein-O-mannosyltransferase	1	1	N
Pneumo_ncap	PF03246	Pneumovirus nucleocapsid protein	2	2	N
Pneumo_phosprot	PF02478	Pneumovirus phosphoprotein	1	1	N
Pneumovirus_M2	PF06436	Pneumovirus matrix protein 2 (M2)	1	1	N
Podoplanin	PF05808	Podoplanin	6	1	N
Pol_alpha_B_N	PF08418	DNA polymerase alpha subunit B N-terminal	1	1	N
POLO_box	PF00659	POLO box duplicated region	44	45	N
Polyoma_coat	PF00718	Polyomavirus coat protein	1	1	N
Porin_1	PF00267	Gram-negative porin	9	5	N
Porin_3	PF01459	Eukaryotic porin	0	3	N
Porin_4	PF13609	Gram-negative porin	3	3	N
POTRA	PF07244	Surface antigen variable number repeat	10	5	N
POTRA_1	PF08478	POTRA domain, FtsQ-type	1	1	N
Pou	PF00157	Pou domain - N-terminal to homeobox domain	0	1	N
Pox_MCEL	PF03291	mRNA capping enzyme	0	1	N
Poxvirus	PF06227	dsDNA Poxvirus	1	1	N
PP2C	PF00481	Protein phosphatase 2C	2	2	N
PP2C_2	PF13672	Protein phosphatase 2C	1	1	N
PP-binding	PF00550	Phosphopantetheine attachment site	37	3	N
PPC	PF04151	Bacterial pre-peptidase C-terminal domain	1	1	N
PPE	PF00823	PPE family	0	1	N
PPO1_DWL	PF12142	Polyphenol oxidase middle domain	3	2	N
PPO1_KFDV	PF12143	Protein of unknown function (DUF_B2219)	3	1	N
PPR	PF01535	PPR repeat	21	4	N
PPR_2	PF13041	PPR repeat family	28	6	N
PPTA	PF01239	Protein prenyltransferase alpha subunit repeat	30	29	N
PPV_E2_N	PF00508	E2 (early) protein, N terminal	1	1	N
PqqD	PF05402	Coenzyme PQQ synthesis protein D (PqqD)	4	4	N
PRC	PF05239	PRC-barrel domain	2	8	N
PRC2_HTH_1	PF18118	Polycomb repressive complex 2 tri-helical domain	5	3	N
PRCH	PF03967	Photosynthetic reaction centre, H-chain N-terminal region	2	27	N
Prenyltrans	PF00432	Prenyltransferase and squalene oxidase repeat	29	29	N
Pre-PUA	PF17832	Pre-PUA-like domain	2	2	N
Presenilin	PF01080	Presenilin	2	2	N
Pre-SET	PF05033	Pre-SET motif	13	6	N
PriA_3primeBD	PF17764	3'DNA-binding domain (3'BD)	1	1	N
PriA_C	PF18074	Primosomal protein N C-terminal domain	1	1	N
Prion	PF00377	Prion/Doppel alpha-helical domain	50	3	N
PRKG1_interact	PF15898	cGMP-dependent protein kinase interacting domain	0	1	N
PRMT5	PF05185	PRMT5 arginine-N-methyltransferase	4	2	N
PRMT5_C	PF17286	PRMT5 oligomerisation domain	21	19	N
PRMT5_TIM	PF17285	PRMT5 TIM barrel domain	5	3	N
Pro_isomerase	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	76	70	N
PRO8NT	PF08082	PRO8NT (NUC069), PrP8 N-terminal domain	3	1	N
PROCN	PF08083	PROCN (NUC071) domain	3	1	N
Profilin	PF00235	Profilin	11	11	N
Pro-NT_NN	PF07421	Neurotensin/neuromedin N precursor	25	1	N
Prot_ATP_ID_OB	PF16450	Proteasomal ATPase OB C-terminal domain	9	12	N
Proteasom_Rpn13	PF04683	Proteasome complex subunit Rpn13 ubiquitin receptor	6	6	N
Proteasome	PF00227	Proteasome subunit	71	63	N
Proteasome_A_N	PF10584	Proteasome subunit A N-terminal signature	67	10	N
Proton_antipo_C	PF01010	NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus	0	7	N
Proton_antipo_M	PF00361	Proton-conducting membrane transporter	15	29	N
PRP38	PF03371	PRP38 family	0	2	N
PRP8_domainIV	PF12134	PRP8 domain IV core	2	1	N
PRY	PF13765	SPRY-associated domain	11	11	N
PS_Dcarbxylase	PF02666	Phosphatidylserine decarboxylase	0	5	N
PsaA_PsaB	PF00223	Photosystem I psaA/psaB protein	28	99	N
PsaD	PF02531	PsaD	14	1	N
PsaL	PF02605	Photosystem I reaction centre subunit XI	25	76	N
PsaN	PF05479	Photosystem I reaction centre subunit N (PSAN or PSI-N)	3	2	N
Psb28	PF03912	Psb28 protein	3	2	N
PsbH	PF00737	Photosystem II 10 kDa phosphoprotein	73	76	N
PsbJ	PF01788	PsbJ	69	49	N
PsbK	PF02533	Photosystem II 4 kDa reaction centre component	74	83	N
PsbL	PF02419	PsbL protein	73	75	N
PsbM	PF05151	Photosystem II reaction centre M protein (PsbM)	72	75	N
PsbP	PF01789	PsbP	1	1	N
PsbQ	PF05757	Oxygen evolving enhancer protein 3 (PsbQ)	6	4	N
PsbW	PF07123	Photosystem II reaction centre W protein (PsbW)	11	6	N
PsbX	PF06596	Photosystem II reaction centre X protein (PsbX)	73	39	N
PsbY	PF06298	Photosystem II protein Y (PsbY)	35	18	N
PseudoU_synth_1	PF01416	tRNA pseudouridine synthase	2	2	N
PSI	PF01437	Plexin repeat	4	1	N
PSI_8	PF00796	Photosystem I reaction centre subunit VIII	25	52	N
PSI_integrin	PF17205	Integrin plexin domain	24	1	N
PSI_PsaE	PF02427	Photosystem I reaction centre subunit IV / PsaE	14	1	N
PSI_PsaF	PF02507	Photosystem I reaction centre subunit III	26	80	N
PSI_PsaH	PF03244	Photosystem I reaction centre subunit VI	11	30	N
PSII	PF00421	Photosystem II protein	77	94	N
PSII_BNR	PF14870	Photosynthesis system II assembly factor YCF48	2	2	N
PSII_Ycf12	PF05969	Photosystem II complex subunit Ycf12	69	34	N
PSMalpha	PF17063	Phenol-soluble modulin alpha peptide family	13	4	N
PSMbeta	PF05480	Phenol-soluble modulin beta protein	0	1	N
PSP	PF04046	PSP	1	1	N
PTB	PF08416	Phosphotyrosine-binding domain	1	1	N
PTCB-BRCT	PF12738	twin BRCT domain	14	13	Y
PTPA	PF03095	Phosphotyrosyl phosphate activator (PTPA) protein	2	2	N
PTR2	PF00854	POT family	8	8	N
PUA	PF01472	PUA domain	2	2	N
PUB	PF09409	PUB domain	7	7	N
PUB_1	PF18486	PNGase/UBA- or UBX-containing domain	6	1	N
PUF	PF00806	Pumilio-family RNA binding repeat	1	4	N
PUL	PF08324	PUL domain	1	1	N
PUMA	PF15826	Bcl-2-binding component 3, p53 upregulated modulator of apoptosis	18	1	N
Pup_ligase	PF03136	Pup-ligase protein	4	4	N
PurA	PF04845	PurA ssDNA and RNA-binding protein	0	1	N
PWWP	PF00855	PWWP domain	11	11	Y
PX	PF00787	PX domain	11	12	N
PXT1	PF15214	Peroxisomal testis-specific protein 1	2	1	N
Pyr_redox_2	PF07992	Pyridine nucleotide-disulphide oxidoreductase	1	1	N
QRPTase_C	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain	1	1	N
QRPTase_N	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain	1	1	N
Qua1	PF16274	Qua1 domain	0	1	N
RAB3GAP2_N	PF14655	Rab3 GTPase-activating protein regulatory subunit N-terminus	2	1	N
Rab5-bind	PF09311	Rabaptin-like protein	0	1	N
Rad1	PF02144	Repair protein Rad1/Rec1/Rad17	2	2	N
Rad10	PF03834	Binding domain of DNA repair protein Ercc1 (rad10/Swi10)	1	1	N
Rad50_zn_hook	PF04423	Rad50 zinc hook motif	1	1	N
Rad51	PF08423	Rad51	11	11	N
Rad60-SLD	PF11976	Ubiquitin-2 like Rad60 SUMO-like	41	33	N
Radial_spoke	PF04712	Radial spokehead-like protein	2	2	N
Radial_spoke_3	PF06098	Radial spoke protein 3	1	2	N
Radical_SAM	PF04055	Radical SAM superfamily	6	5	N
RAG2_PHD	PF13341	RAG2 PHD domain	6	6	N
RALF	PF05498	Rapid ALkalinization Factor (RALF)	1	1	N
RAMP	PF04901	Receptor activity modifying family	5	12	N
Ran_BP1	PF00638	RanBP1 domain	33	1	N
Rap1_C	PF11626	TRF2-interacting telomeric protein/Rap1 - C terminal domain	4	4	N
RAP80_UIM	PF18282	RAP80 N-terminal ubiquitin interaction motif	0	1	N
RapH_N	PF18801	response regulator aspartate phosphatase H, N terminal	3	1	N
Ras	PF00071	Ras family	69	40	N
RasGEF	PF00617	RasGEF domain	6	5	N
RAWUL	PF16207	RAWUL domain RING finger- and WD40-associated ubiquitin-like	1	2	N
RB_A	PF01858	Retinoblastoma-associated protein A domain	13	3	N
RB_B	PF01857	Retinoblastoma-associated protein B domain	11	11	N
Rb_C	PF08934	Rb C-terminal domain	15	4	N
RbcX	PF02341	RbcX protein	2	2	N
RBD-FIP	PF09457	FIP domain	0	3	N
RBM39linker	PF15519	linker between RRM2 and RRM3 domains in RBM39 protein	3	3	N
Rbsn	PF11464	Rabenosyn Rab binding domain	0	1	N
RCC1	PF00415	Regulator of chromosome condensation (RCC1) repeat	9	6	N
Rcd1	PF04078	Cell differentiation family, Rcd1-like	5	5	N
RdRP_1	PF00680	Viral RNA-dependent RNA polymerase	10	7	N
RdRP_5	PF07925	Reovirus RNA-dependent RNA polymerase lambda 3	2	2	N
REC114-like	PF15165	Meiotic recombination protein REC114-like	1	1	N
Recep_L_domain	PF01030	Receptor L domain	40	18	N
RecO_C	PF02565	Recombination protein O C terminal	1	1	N
Rep_3	PF01051	Initiator Replication protein	3	3	N
Rep-A_N	PF04057	Replication factor-A protein 1, N-terminal domain	8	8	N
Repressor_Mnt	PF11423	Regulatory protein Mnt	0	1	N
Reprolysin	PF01421	Reprolysin (M12B) family zinc metalloprotease	6	6	N
ResIII	PF04851	Type III restriction enzyme, res subunit	1	2	N
Response_reg	PF00072	Response regulator receiver domain	13	13	N
Retrotrans_gag	PF03732	Retrotransposon gag protein	5	5	N
REV1_C	PF16727	DNA repair protein REV1 C-terminal domain	7	6	N
RF-1	PF00472	RF-1 domain	65	14	N
RGS	PF00615	Regulator of G protein signaling domain	1	2	N
RHH_1	PF01402	Ribbon-helix-helix protein, copG family	0	5	N
RHIM	PF12721	RIP homotypic interaction motif	2	2	N
Rhodanese	PF00581	Rhodanese-like domain	10	4	N
RhodobacterPufX	PF11511	Intrinsic membrane protein PufX	0	14	N
RhoGAP	PF00620	RhoGAP domain	1	1	N
Rhomboid	PF01694	Rhomboid family	25	25	N
Rhv	PF00073	picornavirus capsid protein	33	13	N
RIBIOP_C	PF04950	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal	2	1	N
Ribonuc_red_lgC	PF02867	Ribonucleotide reductase, barrel domain	21	21	N
Ribonuc_red_sm	PF00268	Ribonucleotide reductase, small chain	1	1	N
Ribonucleas_3_3	PF14622	Ribonuclease-III-like	31	1	N
Ribosom_S12_S23	PF00164	Ribosomal protein S12/S23	742	21	N
Ribosomal_60s	PF00428	60s Acidic ribosomal protein	101	1	N
Ribosomal_L1	PF00687	Ribosomal protein L1p/L10e family	164	3	N
Ribosomal_L10	PF00466	Ribosomal protein L10	188	1	N
Ribosomal_L11	PF00298	Ribosomal protein L11, RNA binding domain	261	12	N
Ribosomal_L11_N	PF03946	Ribosomal protein L11, N-terminal domain	222	7	N
Ribosomal_L12	PF00542	Ribosomal protein L7/L12 C-terminal domain	34	2	N
Ribosomal_L12_N	PF16320	Ribosomal protein L7/L12 dimerisation domain	36	3	N
Ribosomal_L13	PF00572	Ribosomal protein L13	544	1	N
Ribosomal_L14	PF00238	Ribosomal protein L14p/L23e	480	3	N
Ribosomal_L15e	PF00827	Ribosomal L15	267	2	N
Ribosomal_L16	PF00252	Ribosomal protein L16p/L10e	683	83	N
Ribosomal_L17	PF01196	Ribosomal protein L17	349	13	N
Ribosomal_L18A	PF01775	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A	260	1	N
Ribosomal_L19e	PF01280	Ribosomal protein L19e	265	2	N
Ribosomal_L2	PF00181	Ribosomal Proteins L2, RNA binding domain	479	2	N
Ribosomal_L20	PF00453	Ribosomal protein L20	344	12	N
Ribosomal_L21e	PF01157	Ribosomal protein L21e	169	2	N
Ribosomal_L21p	PF00829	Ribosomal prokaryotic L21 protein	309	1	N
Ribosomal_L22	PF00237	Ribosomal protein L22p/L17e	691	128	N
Ribosomal_L22e	PF01776	Ribosomal L22e protein family	257	2	N
Ribosomal_L23	PF00276	Ribosomal protein L23	689	124	N
Ribosomal_L23eN	PF03939	Ribosomal protein L23, N-terminal domain	261	1	N
ribosomal_L24	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24	416	12	N
Ribosomal_L25p	PF01386	Ribosomal L25p family	353	1	N
Ribosomal_L27	PF01016	Ribosomal L27 protein	385	1	N
Ribosomal_L27A	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	485	2	N
Ribosomal_L27e	PF01777	Ribosomal L27e protein family	164	2	N
Ribosomal_L28	PF00830	Ribosomal L28 family	368	9	N
Ribosomal_L29	PF00831	Ribosomal L29 protein	649	3	N
Ribosomal_L3	PF00297	Ribosomal protein L3	485	2	N
Ribosomal_L30	PF00327	Ribosomal protein L30p/L7e	483	2	N
Ribosomal_L30_N	PF08079	Ribosomal L30 N-terminal domain	262	2	N
Ribosomal_L31e	PF01198	Ribosomal protein L31e	264	2	N
Ribosomal_L32p	PF01783	Ribosomal L32p protein family	417	1	N
Ribosomal_L34e	PF01199	Ribosomal protein L34e	261	21	N
Ribosomal_L35p	PF01632	Ribosomal protein L35	414	154	N
Ribosomal_L36	PF00444	Ribosomal protein L36	250	3	N
Ribosomal_L36e	PF01158	Ribosomal protein L36e	165	1	N
Ribosomal_L37e	PF01907	Ribosomal protein L37e	265	73	N
Ribosomal_L39	PF00832	Ribosomal L39 protein	265	21	N
Ribosomal_L4	PF00573	Ribosomal protein L4/L1 family	693	140	N
Ribosomal_L5	PF00281	Ribosomal protein L5	461	6	N
Ribosomal_L5_C	PF00673	ribosomal L5P family C-terminus	517	7	N
Ribosomal_L6	PF00347	Ribosomal protein L6	652	14	N
Ribosomal_L7Ae	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	205	5	N
Ribosomal_L9_N	PF01281	Ribosomal protein L9, N-terminal domain	282	3	N
Ribosomal_S10	PF00338	Ribosomal protein S10p/S20e	800	8	N
Ribosomal_S11	PF00411	Ribosomal protein S11	807	9	N
Ribosomal_S13	PF00416	Ribosomal protein S13/S18	771	366	N
Ribosomal_S14	PF00253	Ribosomal protein S14p/S29e	591	1	N
Ribosomal_S17	PF00366	Ribosomal protein S17	599	3	N
Ribosomal_S19	PF00203	Ribosomal protein S19	580	1	N
Ribosomal_S2	PF00318	Ribosomal protein S2	754	8	N
Ribosomal_S26e	PF01283	Ribosomal protein S26e	194	2	N
Ribosomal_S3_C	PF00189	Ribosomal protein S3, C-terminal domain	765	6	N
Ribosomal_S30	PF04758	Ribosomal protein S30	177	2	N
Ribosomal_S4	PF00163	Ribosomal protein S4/S9 N-terminal domain	555	5	N
Ribosomal_S5	PF00333	Ribosomal protein S5, N-terminal domain	601	3	N
Ribosomal_S8	PF00410	Ribosomal protein S8	587	3	N
Ribosomal_S9	PF00380	Ribosomal protein S9/S16	803	5	N
Ricin_B_lectin	PF00652	Ricin-type beta-trefoil lectin domain	13	14	N
RicinB_lectin_2	PF14200	Ricin-type beta-trefoil lectin domain-like	8	3	N
Rieske	PF00355	Rieske [2Fe-2S] domain	31	5	N
RIIa	PF02197	Regulatory subunit of type II PKA R-subunit	5	12	N
RILP	PF11461	Rab interacting lysosomal protein	0	2	N
RimK	PF08443	RimK-like ATP-grasp domain	10	10	N
Rimk_N	PF18030	RimK PreATP-grasp domain	4	3	N
RIP	PF00161	Ribosome inactivating protein	12	15	N
RNA_pol_A_bac	PF01000	RNA polymerase Rpb3/RpoA insert domain	36	16	N
RNA_pol_I_TF	PF04090	RNA polymerase I specific initiation factor	1	1	N
RNA_pol_L	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain	13	14	N
RNA_pol_Rpb1_1	PF04997	RNA polymerase Rpb1, domain 1	36	8	N
RNA_pol_Rpb1_2	PF00623	RNA polymerase Rpb1, domain 2	36	9	N
RNA_pol_Rpb1_4	PF05000	RNA polymerase Rpb1, domain 4	23	7	N
RNA_pol_Rpb1_5	PF04998	RNA polymerase Rpb1, domain 5	28	14	N
RNA_pol_Rpb1_7	PF04990	RNA polymerase Rpb1, domain 7	14	1	N
RNA_pol_Rpb2_1	PF04563	RNA polymerase beta subunit	32	19	N
RNA_pol_Rpb2_2	PF04561	RNA polymerase Rpb2, domain 2	28	5	N
RNA_pol_Rpb2_3	PF04565	RNA polymerase Rpb2, domain 3	22	5	N
RNA_pol_Rpb2_6	PF00562	RNA polymerase Rpb2, domain 6	36	34	N
RNA_pol_Rpb2_7	PF04560	RNA polymerase Rpb2, domain 7	36	3	N
RNA_pol_Rpb4	PF03874	RNA polymerase Rpb4	19	3	N
RNase_H	PF00075	RNase H	6	1	N
RNase_PH	PF01138	3' exoribonuclease family, domain 1	2	2	N
RNase_PH_C	PF03725	3' exoribonuclease family, domain 2	2	2	N
RNase_T	PF00929	Exonuclease	2	2	N
RnaseA	PF00074	Pancreatic ribonuclease	35	3	N
RNPP_C	PF18768	RNPP family C-terminal domain	5	2	N
Rota_NSP3	PF01665	Rotavirus non-structural protein NSP3	1	1	N
Rota_NSP4	PF01452	Rotavirus non structural protein	0	1	N
Rotamase	PF00639	PPIC-type PPIASE domain	9	9	N
RPA_C	PF08784	Replication protein A C terminal	2	2	N
RPAP2_Rtr1	PF04181	Rtr1/RPAP2 family	1	1	N
RPN1_C	PF18051	26S proteasome non-ATPase regulatory subunit RPN1 C-terminal	6	1	N
RPN1_RPN2_N	PF17781	RPN1 N-terminal domain	7	1	N
Rpn3_C	PF08375	Proteasome regulatory subunit C-terminal	5	1	N
RPN6_C_helix	PF18503	26S proteasome subunit RPN6 C-terminal helix domain	5	1	N
RPN7	PF10602	26S proteasome subunit RPN7	4	1	N
Rpn9_C	PF18261	Rpn9 C-terminal helix	1	1	N
RraA-like	PF03737	Aldolase/RraA	1	1	N
Rrf2	PF02082	Iron-dependent Transcriptional regulator	1	1	N
RRM_1	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	48	25	N
RRM_8	PF11835	RRM-like domain	4	4	N
Rrn6	PF10214	RNA polymerase I-specific transcription-initiation factor	1	1	N
rRNA_proc-arch	PF13234	rRNA-processing arch domain	2	1	N
Rrp40_N	PF18311	Exosome complex exonuclease Rrp40 N-terminal domain	0	2	N
Rsc14	PF08586	RSC complex, Rsc14/Ldb7 subunit	2	2	N
RsfS	PF02410	Ribosomal silencing factor during starvation	6	1	N
RTT107_BRCT_5	PF16770	Regulator of Ty1 transposition protein 107 BRCT domain	9	9	Y
RTT107_BRCT_6	PF16771	Regulator of Ty1 transposition protein 107 BRCT domain	1	1	N
RuBisCO_large	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain	3	3	N
RuBisCO_large_N	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain	3	3	N
RuBisCO_small	PF00101	Ribulose bisphosphate carboxylase, small chain	3	4	N
Rubredoxin	PF00301	Rubredoxin	1	2	N
RuvB_N	PF05496	Holliday junction DNA helicase RuvB P-loop domain	0	8	N
rve	PF00665	Integrase core domain	20	21	N
RVP	PF00077	Retroviral aspartyl protease	102	101	N
RVT_1	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	14	1	N
RWD	PF05773	RWD domain	0	4	N
RyR	PF02026	RyR domain	1	1	N
S_100	PF01023	S-100/ICaBP type calcium binding domain	23	28	N
S_locus_glycop	PF00954	S-locus glycoprotein domain	0	1	N
S10_plectin	PF03501	Plectin/S10 domain	264	5	N
S4	PF01479	S4 domain	640	3	N
SabA_adhesion	PF18304	SabA N-terminal extracellular adhesion domain	1	1	N
SAC3	PF12209	Leucine permease transcriptional regulator helical domain	2	1	N
SAC3_GANP	PF03399	SAC3/GANP family	1	1	N
SAD_SRA	PF02182	SAD/SRA domain	2	1	N
Sad1_UNC	PF07738	Sad1 / UNC-like C-terminal	2	9	N
Sas10_Utp3	PF04000	Sas10/Utp3/C1D family	3	1	N
SAWADEE	PF16719	SAWADEE domain	8	8	N
SbcCD_C	PF13558	Putative exonuclease SbcCD, C subunit	0	2	N
SBP_bac_1	PF01547	Bacterial extracellular solute-binding protein	22	11	N
SBP_bac_3	PF00497	Bacterial extracellular solute-binding proteins, family 3	2	2	N
SBP_bac_5	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle	66	66	N
SBP_bac_8	PF13416	Bacterial extracellular solute-binding protein	11	5	N
SCRL	PF06876	Plant self-incompatibility response (SCRL) protein	0	1	N
Sdh_cyt	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit	0	1	N
SdrG_C_C	PF10425	C-terminus of bacterial fibrinogen-binding adhesin	10	10	N
Sds3	PF08598	Sds3-like	0	2	N
Sec1	PF00995	Sec1 family	4	4	N
Sec23_BS	PF08033	Sec23/Sec24 beta-sandwich domain	18	11	N
Sec23_helical	PF04815	Sec23/Sec24 helical domain	18	3	N
Sec23_trunk	PF04811	Sec23/Sec24 trunk domain	18	2	N
Sec61_beta	PF03911	Sec61beta family	13	1	N
SecA_DEAD	PF07517	SecA DEAD-like domain	2	2	N
SecA_PP_bind	PF01043	SecA preprotein cross-linking domain	1	1	N
SecA_SW	PF07516	SecA Wing and Scaffold domain	2	1	N
SecB	PF02556	Preprotein translocase subunit SecB	4	7	N
SecE	PF00584	SecE/Sec61-gamma subunits of protein translocation complex	14	5	N
SecY	PF00344	SecY	25	19	N
SelR	PF01641	SelR domain	2	1	N
Sema	PF01403	Sema domain	3	1	N
Sema4F_C	PF19428	Semaphorin 4F C-terminal	0	1	N
SepF	PF04472	Cell division protein SepF	3	3	N
Serpin	PF00079	Serpin (serine protease inhibitor)	32	19	N
Serum_albumin	PF00273	Serum albumin family	4	1	N
SET	PF00856	SET domain	106	100	N
Sgf11_N	PF18519	SAGA-associated factor 11 N-terminal domain	1	2	N
SH2	PF00017	SH2 domain	167	160	Y
SH2_2	PF14633	SH2 domain	5	3	N
SH3_1	PF00018	SH3 domain	114	105	Y
SH3_2	PF07653	Variant SH3 domain	7	7	N
SH3_3	PF08239	Bacterial SH3 domain	1	1	N
SH3_5	PF08460	Bacterial SH3 domain	1	1	N
SH3_9	PF14604	Variant SH3 domain	33	30	Y
She2p	PF11435	RNA binding protein She2p	1	2	N
Shigella_OspC	PF06128	Shigella flexneri OspC protein	1	1	N
SHNi-TPR	PF10516	SHNi-TPR	2	2	N
SHS2_FTSA	PF02491	SHS2 domain inserted in FTSA	1	1	N
Sigma70_r1_2	PF00140	Sigma-70 factor, region 1.2	12	4	N
SIKE	PF05769	SIKE family	1	1	N
Sin3_corepress	PF08295	Sin3 family co-repressor	1	1	N
Sina	PF03145	Seven in absentia protein family	7	7	N
SinI	PF08671	Anti-repressor SinI	0	2	N
SIP1	PF04938	Survival motor neuron (SMN) interacting protein 1 (SIP1)	1	6	N
SIR2	PF02146	Sir2 family	111	109	N
SKG6	PF08693	Transmembrane alpha-helix domain	0	1	N
SKICH	PF17751	SKICH domain	0	2	N
Skp1	PF01466	Skp1 family, dimerisation domain	16	4	N
Skp1_POZ	PF03931	Skp1 family, tetramerisation domain	32	1	N
SLM4	PF16818	Protein SLM4	0	1	N
SLT	PF01464	Transglycosylase SLT domain	6	4	N
SLT_beta	PF02258	Shiga-like toxin beta subunit	6	4	N
SLT_L	PF14718	Soluble lytic murein transglycosylase L domain	3	2	N
SMC_hinge	PF06470	SMC proteins Flexible Hinge Domain	1	1	N
SMC_N	PF02463	RecF/RecN/SMC N terminal domain	3	2	N
SMC_ScpB	PF04079	Segregation and condensation complex subunit ScpB	1	1	N
SMN	PF06003	Survival motor neuron protein (SMN)	2	1	N
SNARE	PF05739	SNARE domain	0	6	N
SNase	PF00565	Staphylococcal nuclease homologue	7	5	N
SNF2-rel_dom	PF00176	SNF2-related domain	11	2	N
SNF5	PF04855	SNF5 / SMARCB1 / INI1	3	1	N
SNX17_FERM_C	PF18116	Sorting Nexin 17 FERM C-terminal domain	1	2	N
Snx8_BAR_dom	PF19566	Sorting nexin 8/Mvp1 BAR domain	0	1	N
SOAR	PF16533	STIM1 Orai1-activating region	1	1	N
Sod_Cu	PF00080	Copper/zinc superoxide dismutase (SODC)	6	5	N
SopD	PF11047	Salmonella outer protein D	1	1	N
Sortase	PF04203	Sortase domain	10	10	N
Sortilin_C	PF15901	Sortilin, neurotensin receptor 3, C-terminal	4	3	N
Sortilin-Vps10	PF15902	Sortilin, neurotensin receptor 3,	4	4	N
SpaA	PF17802	Prealbumin-like fold domain	2	2	N
SPASM	PF13186	Iron-sulfur cluster-binding domain	4	4	N
Spc24	PF08286	Spc24 subunit of Ndc80	2	4	N
Spidroin_N	PF16763	Major ampullate spidroin 1, spider silk protein 1, N-term	1	1	N
Spindle_Spc25	PF08234	Chromosome segregation protein Spc25	2	3	N
Spin-Ssty	PF02513	Spin/Ssty Family	12	12	Y
SPOC	PF07744	SPOC domain	5	5	N
SPRY	PF00622	SPRY domain	37	32	N
Spy1	PF11357	Cell cycle regulatory protein	0	1	N
Squash	PF00299	Squash family serine protease inhibitor	18	2	N
SRF-TF	PF00319	SRF-type transcription factor (DNA-binding and dimerisation domain)	1	1	N
SRP_SPB	PF02978	Signal peptide binding domain	20	16	N
SRP19	PF01922	SRP19 protein	9	1	N
SRP54	PF00448	SRP54-type protein, GTPase domain	16	1	N
SSB	PF00436	Single-strand binding protein family	1	1	N
SspB	PF04386	Stringent starvation protein B	4	4	N
Ssu72	PF04722	Ssu72-like protein	8	8	N
ST7	PF04184	ST7 protein	1	1	N
STAG	PF08514	STAG domain	1	1	N
Stap_Strp_tox_C	PF02876	Staphylococcal/Streptococcal toxin, beta-grasp domain	22	4	N
Staph_opine_DH	PF10100	Staphylopine dehydrogenase	1	1	N
Staufen_C	PF16482	Staufen C-terminal domain	1	2	N
StbA	PF06406	StbA protein	1	1	N
STE2	PF02116	Fungal pheromone mating factor STE2 GPCR	5	4	N
STPPase_N	PF16891	Serine-threonine protein phosphatase N-terminal domain	27	5	N
Strabismus	PF06638	Strabismus protein	3	2	N
Striatin	PF08232	Striatin family	1	2	N
STT3	PF02516	Oligosaccharyl transferase STT3 subunit	13	11	N
Suf	PF05843	Suppressor of forked protein (Suf)	1	1	N
SUFU	PF05076	Suppressor of fused protein (SUFU)	4	4	N
SUFU_C	PF12470	Suppressor of Fused Gli/Ci N terminal binding domain	4	3	N
Sulfotransfer_1	PF00685	Sulfotransferase domain	3	3	N
Sulfotransfer_3	PF13469	Sulfotransferase family	4	4	N
Suppressor_APC	PF11414	Adenomatous polyposis coli tumour suppressor protein	1	1	N
Surfac_D-trimer	PF09006	Lung surfactant protein D coiled-coil trimerisation	0	1	N
Surp	PF01805	Surp module	0	1	N
SusD-like_2	PF12771	Starch-binding associating with outer membrane	3	3	N
SusD-like_3	PF14322	Starch-binding associating with outer membrane	6	5	N
Sushi	PF00084	Sushi repeat (SCR repeat)	2	1	N
Sushi_2	PF09014	Beta-2-glycoprotein-1 fifth domain	0	1	N
SWIB	PF02201	SWIB/MDM2 domain	68	62	Y
SWIRM	PF04433	SWIRM domain	25	4	N
Synaphin	PF05835	Synaphin protein	0	4	N
Synaptobrevin	PF00957	Synaptobrevin	10	1	N
Syndecan	PF01034	Syndecan domain	5	3	N
Syntaxin	PF00804	Syntaxin	1	6	N
Syntaxin-6_N	PF09177	Syntaxin 6, N-terminal	3	7	N
Synuclein	PF01387	Synuclein	17	3	N
T2SS_PulS_OutS	PF09691	Type II secretion system pilotin lipoprotein (PulS_OutS)	1	1	N
T3SS_needle_E	PF08988	Type III secretion system, cytoplasmic E component of needle	0	1	N
T4BSS_DotH_IcmK	PF12293	Putative outer membrane core complex of type IVb secretion	7	1	N
T6SS_TssF	PF05947	Type VI secretion system, TssF	1	1	N
T6SS_TssG	PF06996	Type VI secretion, TssG	1	1	N
TACC_C	PF05010	Transforming acidic coiled-coil-containing protein (TACC), C-terminal	0	2	N
TAF	PF02969	TATA box binding protein associated factor (TAF)	21	9	N
TAF6_C	PF07571	TAF6 C-terminal HEAT repeat domain	1	1	N
TAFH	PF07531	NHR1 homology to TAF	1	1	N
Talin_middle	PF09141	Talin, middle domain	2	1	N
TAP_C	PF03943	TAP C-terminal domain	3	2	N
Tat	PF00539	Transactivating regulatory protein (Tat)	16	3	N
TBD	PF12845	TBD domain	3	1	N
TBK1_CCD1	PF18394	TANK-binding kinase 1 coiled-coil domain 1	0	1	N
Tcell_CD4_C	PF12104	T cell CD4 receptor C terminal region	7	1	N
Tcp10_C	PF07202	T-complex protein 10 C-terminus	2	2	N
TcpF	PF06340	Vibrio cholerae toxin co-regulated pilus biosynthesis protein F	1	1	N
TCR_zetazeta	PF11628	T-cell surface glycoprotein CD3 zeta chain	0	1	N
Tctex-1	PF03645	Tctex-1 family	1	2	N
TCTP	PF00838	Translationally controlled tumour protein	1	1	N
TERB2	PF15101	Telomere-associated protein TERB2	0	1	N
TetR_C_32	PF19344	Tetracyclin repressor-like, C-terminal domain	4	4	N
TetR_N	PF00440	Bacterial regulatory proteins, tetR family	9	5	N
Tfb2	PF03849	Transcription factor Tfb2	1	3	N
TFIIB	PF00382	Transcription factor TFIIB repeat	7	3	N
TFIIF_alpha	PF05793	Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	8	2	N
TFR_dimer	PF04253	Transferrin receptor-like dimerisation domain	1	1	N
TGF_beta	PF00019	Transforming growth factor beta like domain	1	1	N
ThiF	PF00899	ThiF family	9	8	N
Thioesterase	PF00975	Thioesterase domain	3	3	N
Thionin	PF00321	Plant thionin	2	3	N
Thioredoxin	PF00085	Thioredoxin	14	9	N
Thioredoxin_6	PF13848	Thioredoxin-like domain	1	1	N
THOC7	PF05615	Tho complex subunit 7	0	3	N
Thrombin_light	PF09396	Thrombin light chain	342	2	N
Thymidylat_synt	PF00303	Thymidylate synthase	2	2	N
TIG	PF01833	IPT/TIG domain	3	1	N
TIG_SUH	PF20144	TIG domain	5	2	N
Tim17	PF02466	Tim17/Tim22/Tim23/Pmp24 family	4	9	N
TINF2_N	PF14973	TERF1-interacting nuclear factor 2 N-terminus	1	1	N
TIP41	PF04176	TIP41-like family	1	1	N
TIP49	PF06068	TIP49 P-loop domain	4	4	N
TipAS	PF07739	TipAS antibiotic-recognition domain	2	2	N
TIR_2	PF13676	TIR domain	1	1	N
Tli4_C	PF18426	Tle cognate immunity protein 4 C-terminal domain	1	1	N
Tlr3_TMD	PF17968	Toll-like receptor 3 trans-membrane domain	0	2	N
TNF	PF00229	TNF(Tumour Necrosis Factor) family	6	8	N
TNFR_16_TM	PF18422	Tumor necrosis factor receptor member 16 trans-membrane domain	0	3	N
TNFR_c6	PF00020	TNFR/NGFR cysteine-rich region	1	1	N
TniB	PF05621	Bacterial TniB protein	2	2	N
TOC159_MAD	PF11886	Translocase of chloroplast 159/132, membrane anchor domain	3	3	N
TolA_bind_tri	PF16331	TolA binding protein trimerisation	0	2	N
Tom22	PF04281	Mitochondrial import receptor subunit Tom22	0	1	N
Tom6	PF17112	Mitochondrial import receptor subunit Tom6, fungal	0	1	N
TonB_2	PF13103	TonB C terminal	1	1	N
TonB_dep_Rec	PF00593	TonB dependent receptor	20	20	N
TOP_N	PF19310	Neurolysin/Thimet oligopeptidase, N-terminal domain	3	1	N
Torsin	PF06309	Torsin	1	1	N
Toxin_2	PF00451	Scorpion short toxin, BmKK2	4	1	N
Toxin_36	PF10550	Conantokin toxin	15	1	N
Toxin_8	PF07365	Alpha conotoxin precursor	62	2	N
Toxin_R_bind_C	PF07951	Clostridium neurotoxin, C-terminal receptor binding	9	10	N
Toxin_R_bind_N	PF07953	Clostridium neurotoxin, N-terminal receptor binding	9	2	N
Toxin_TOLIP	PF00087	Snake toxin and toxin-like protein	18	18	N
TP_methylase	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases	3	3	N
TPR_1	PF00515	Tetratricopeptide repeat	54	37	N
TPR_11	PF13414	TPR repeat	65	45	N
TPR_12	PF13424	Tetratricopeptide repeat	45	31	N
TPR_16	PF13432	Tetratricopeptide repeat	23	16	N
TPR_19	PF14559	Tetratricopeptide repeat	27	3	N
TPR_2	PF07719	Tetratricopeptide repeat	25	31	N
TPR_3	PF07720	Tetratricopeptide repeat	4	4	N
TPR_5	PF12688	Tetratrico peptide repeat	0	1	N
TPR_7	PF13176	Tetratricopeptide repeat	0	1	N
TQ	PF18202	T-Q ester bond containing domain	1	1	N
Tra_M	PF05261	TraM protein, DNA-binding	1	1	N
TRAF_BIRC3_bd	PF16673	TNF receptor-associated factor BIRC3 binding domain	4	1	N
TraK	PF06586	TraK protein	1	1	N
Trans_reg_C	PF00486	Transcriptional regulatory protein, C terminal	1	1	N
Transcript_VP30	PF11507	Ebola virus-specific transcription factor VP30	3	3	N
Transferrin	PF00405	Transferrin	35	17	N
Transglut_core	PF01841	Transglutaminase-like superfamily	12	11	N
Transglut_prok	PF09017	Microbial transglutaminase	1	1	N
Transgly	PF00912	Transglycosylase	7	1	N
Transketolase_C	PF02780	Transketolase, C-terminal domain	3	2	N
Transp_inhibit	PF18791	Transport inhibitor response 1 protein domain	6	6	N
Transpeptidase	PF00905	Penicillin binding protein transpeptidase domain	12	7	N
Transposase_1	PF01359	Transposase (partial DDE domain)	1	1	N
Transthyretin	PF00576	HIUase/Transthyretin family	5	4	N
TrbI	PF03743	Bacterial conjugation TrbI-like protein	6	3	N
TRF	PF08558	Telomere repeat binding factor (TRF)	9	9	N
Tricorn_C1	PF14684	Tricorn protease C1 domain	2	2	N
TrkA_TMD	PF18613	Tyrosine kinase receptor A trans-membrane domain	0	1	N
tRNA_anti-codon	PF01336	OB-fold nucleic acid binding domain	0	3	N
tRNA-synt_2	PF00152	tRNA synthetases class II (D, K and N)	0	3	N
Tropomodulin	PF03250	Tropomodulin	0	1	N
Tropomyosin	PF00261	Tropomyosin	0	6	N
Tropomyosin_1	PF12718	Tropomyosin like	0	3	N
Troponin	PF00992	Troponin	10	3	N
TruD	PF01142	tRNA pseudouridine synthase D (TruD)	3	1	N
Tryp_alpha_amyl	PF00234	Protease inhibitor/seed storage/LTP family	7	1	N
Trypsin	PF00089	Trypsin	634	684	N
Trypsin_2	PF13365	Trypsin-like peptidase domain	40	32	N
TSC22	PF01166	TSC-22/dip/bun family	0	1	N
TSP_NTD	PF17804	Tail specific protease N-terminal domain	1	1	N
TSP9	PF11493	Thylakoid soluble phosphoprotein TSP9	1	1	N
TTD	PF12148	Tandem tudor domain within UHRF1	6	6	N
TTL	PF03133	Tubulin-tyrosine ligase family	5	4	N
Tubulin	PF00091	Tubulin/FtsZ family, GTPase domain	7	6	N
Tubulin_C	PF03953	Tubulin C-terminal domain	6	6	N
Tubulin-binding	PF00418	Tau and MAP protein, tubulin-binding repeat	21	7	N
TUDOR	PF00567	Tudor domain	12	12	N
Tudor_2	PF18104	Jumonji domain-containing protein 2A Tudor domain	12	12	N
Tudor_4	PF18358	Histone methyltransferase Tudor domain	7	7	N
Tudor_5	PF18359	Histone methyltransferase Tudor domain 1	7	7	N
Tudor-knot	PF11717	RNA binding activity-knot of a chromodomain	4	4	N
Tugs	PF17840	Tethering Ubl4a to BAGS domain	0	1	N
Tyr-DNA_phospho	PF06087	Tyrosyl-DNA phosphodiesterase	3	3	N
Tyrosinase	PF00264	Common central domain of tyrosinase	4	3	N
U5_2-snRNA_bdg	PF10597	U5-snRNA binding site 2 of PrP8	2	2	N
U6-snRNA_bdg	PF10596	U6-snRNA interacting domain of PrP8	2	1	N
UB2H	PF14814	Bifunctional transglycosylase second domain	1	1	N
UBA	PF00627	UBA/TS-N domain	1	2	N
UBA_4	PF14555	UBA-like domain	2	1	N
UbiD	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	1	1	N
ubiquitin	PF00240	Ubiquitin family	238	50	N
Ubiquitin_3	PF14836	Ubiquitin-like domain	1	1	N
U-box	PF04564	U-box domain	3	1	N
UCH	PF00443	Ubiquitin carboxyl-terminal hydrolase	3	1	N
UCR_14kD	PF02271	Ubiquinol-cytochrome C reductase complex 14kD subunit	9	3	N
UCR_Fe-S_N	PF10399	Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal	15	2	N
UCR_hinge	PF02320	Ubiquinol-cytochrome C reductase hinge protein	9	1	N
UCR_TM	PF02921	Ubiquinol cytochrome reductase transmembrane region	9	3	N
UCR_UQCRX_QCR9	PF05365	Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like	9	2	N
UcrQ	PF02939	UcrQ family	9	2	N
UDG	PF03167	Uracil DNA glycosylase superfamily	2	2	N
UEV	PF05743	UEV domain	11	11	N
UFC1	PF08694	Ubiquitin-fold modifier-conjugating enzyme 1	2	2	N
Ufm1	PF03671	Ubiquitin fold modifier 1 protein	1	1	N
UL45	PF05473	UL45 protein, carbohydrate-binding C-type lectin-like	1	1	N
UPAR_LY6	PF00021	u-PAR/Ly-6 domain	4	4	N
UQ_con	PF00179	Ubiquitin-conjugating enzyme	12	8	N
Use1	PF09753	Membrane fusion protein Use1	2	4	N
USP7_ICP0_bdg	PF12436	ICP0-binding domain of Ubiquitin-specific protease 7	5	8	N
UTP25	PF06862	Utp25, U3 small nucleolar RNA-associated SSU processome protein 25	0	1	N
UVR	PF02151	UvrB/uvrC motif	0	2	N
UvrD_C_2	PF13538	UvrD-like helicase C-terminal domain	1	1	N
Vac_ImportDeg	PF09783	Vacuolar import and degradation protein	11	11	N
VanY	PF02557	D-alanyl-D-alanine carboxypeptidase	1	1	N
Vasohibin	PF14822	Vasohibin	6	7	N
VASP_tetra	PF08776	VASP tetramerisation domain	0	1	N
V-ATPase_G_2	PF16999	Vacuolar (H+)-ATPase G subunit	1	1	N
VBS	PF08913	Vinculin Binding Site	4	2	N
VEGFR-2_TMD	PF17988	VEGFR-2 Transmembrane domain	0	3	N
VEK-30	PF12107	Plasminogen (Pg) ligand in fibrinolytic pathway	3	1	N
Vfa1	PF08432	AAA-ATPase Vps4-associated protein 1	2	1	N
Vg_Tdu	PF07545	Vestigial/Tondu family	0	1	N
VGCC_beta4Aa_N	PF12052	Voltage gated calcium channel subunit beta domain 4Aa N terminal	7	1	N
VHL	PF01847	VHL beta domain	8	9	N
VHP	PF02209	Villin headpiece domain	4	5	N
VHS	PF00790	VHS domain	12	12	N
Vinculin	PF01044	Vinculin family	23	20	N
VP4_2	PF08935	Viral protein VP4 subunit	0	1	N
VPR	PF00522	VPR/VPX protein	8	2	N
Vps23_core	PF09454	Vps23 core domain	1	1	N
Vps26	PF03643	Vacuolar protein sorting-associated protein 26	5	5	N
VPS28	PF03997	VPS28 protein	1	1	N
Vps39_2	PF10367	Vacuolar sorting protein 39 domain 2	0	1	N
Vps4_C	PF09336	Vps4 C terminal oligomerisation domain	9	1	N
Vps51	PF08700	Vps51/Vps67	3	1	N
VRP3	PF03536	Salmonella virulence-associated 28kDa protein	2	2	N
V-set	PF07686	Immunoglobulin V-set domain	1216	999	N
V-set_2	PF15910	ICOS V-set domain	47	45	N
Vta1	PF04652	Vta1 like	6	4	N
VWA	PF00092	von Willebrand factor type A domain	3	3	N
Waikav_capsid_1	PF12264	Waikavirus capsid protein 1	3	3	N
WD40	PF00400	WD domain, G-beta repeat	595	168	N
WD40_like	PF17005	WD40-like domain	1	1	N
WGG	PF10273	Pre-rRNA-processing protein TSR2	1	1	N
WH1	PF00568	WH1 domain	17	17	Y
WH2	PF02205	WH2 motif	5	1	N
WIYLD	PF10440	Ubiquitin-binding WIYLD domain	0	1	N
WRW	PF10206	Mitochondrial F1F0-ATP synthase, subunit f	5	2	N
WW	PF00397	WW domain	64	59	Y
WXG100	PF06013	Proteins of 100 residues with WXG	3	1	N
XFP_C	PF09363	XFP C-terminal domain	0	1	N
Xlink	PF00193	Extracellular link domain	1	1	N
XRCC4	PF06632	DNA double-strand break repair and V(D)J recombination protein XRCC4	2	1	N
Y_phosphatase	PF00102	Protein-tyrosine phosphatase	46	46	N
Y_phosphatase2	PF03162	Tyrosine phosphatase family	1	1	N
YAF2_RYBP	PF17219	Yaf2/RYBP C-terminal binding motif	0	1	N
YBD	PF17725	YAP binding domain	6	23	N
YbgT_YccB	PF08173	Membrane bound YbgT-like protein	3	1	N
YcaO	PF02624	YcaO cyclodehydratase, ATP-ad Mg2+-binding	1	1	N
Ycf9	PF01737	YCF9	72	80	N
YEATS	PF03366	YEATS family	35	34	Y
Yippee-Mis18	PF03226	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly	9	10	N
YjeF_N	PF03853	YjeF-related protein N-terminus	21	21	N
YkuD	PF03734	L,D-transpeptidase catalytic domain	2	2	N
YoeB_toxin	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	5	1	N
YopH_N	PF09013	YopH, N-terminal	1	1	N
YscJ_FliF_C	PF08345	Flagellar M-ring protein C-terminal	5	2	N
z-alpha	PF02295	Adenosine deaminase z-alpha domain	1	1	N
ZapB	PF06005	Cell division protein ZapB	13	24	N
ZapD	PF07072	Cell division protein	1	1	N
zf-A20	PF01754	A20-like zinc finger	0	1	N
zf-C2H2	PF00096	Zinc finger, C2H2 type	16	1	N
zf-C3HC4_3	PF13920	Zinc finger, C3HC4 type (RING finger)	0	1	N
zf-C4_ClpX	PF06689	ClpX C4-type zinc finger	3	1	N
zf-C5HC2	PF02928	C5HC2 zinc finger	6	2	N
zf-CCCH	PF00642	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	1	1	N
zf-CCHC	PF00098	Zinc knuckle	13	1	N
zf-CW	PF07496	CW-type Zinc Finger	16	11	Y
zf-DBF	PF07535	DBF zinc finger	1	1	N
zf-HC5HC2H_2	PF13832	PHD-zinc-finger like domain	1	1	N
zf-MYND	PF01753	MYND finger	6	1	N
zf-MYST	PF17772	MYST family zinc finger domain	2	1	N
zf-RING_5	PF14634	zinc-RING finger domain	0	1	N
zf-Sec23_Sec24	PF04810	Sec23/Sec24 zinc finger	18	12	N
zf-TAZ	PF02135	TAZ zinc finger	8	9	N
zf-UBP	PF02148	Zn-finger in ubiquitin-hydrolases and other protein	1	1	N
zf-UBR	PF02207	Putative zinc finger in N-recognin (UBR box)	15	17	Y
zf-WRNIP1_ubi	PF18279	Werner helicase-interacting protein 1 ubiquitin-binding domain	1	1	N
ZipA_C	PF04354	ZipA, C-terminal FtsZ-binding domain	1	1	N
Zmiz1_N	PF18028	Zmiz1 N-terminal tetratricopeptide repeat domain	4	6	N
Zn-C2H2_12	PF18112	Autophagy receptor zinc finger-C2H2 domain	0	1	N
ZT_dimer	PF16916	Dimerisation domain of Zinc Transporter	1	1	N
ZZ	PF00569	Zinc finger, ZZ type	7	6	N