PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7PI3

#CDRs = 8; #Clusters = 18.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	CDRLenMismatch	-1.0	H1	14	H1-14-*	-1	KGSGFfSFSSYTMQ	BBBLBBLAAABBBB
B	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	CDRLenMismatch	-1.0	H2	9	H2-9-1	18	SISSGGGTN	BBBAALBBB
B	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	Ch_IGHV1-1*01	40.0	H3	19	H3-19-*	-1	AKHGVNGCDWSysvgcVDA
B	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	Ch_IGHV1-1*01	87.5	H4	8	H4-8-1	13	RDNGQSTL	BBAAALBB
C	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	CDRLenMismatch	-1.0	L1	9	L1-9-*	-1	SGGSSSYYG
C	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	62.5	L2	8	L2-8-1	15	YNNQKRPS	BLLABBBB
C	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	44.4	L3	9	L3-9-*	-1	GSRDNSGGI	BBBBAABBB
C	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	83.3	L4	6	L4-6-2	21	KSGSTG	BBEABB
D	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	76.9	H1	13	H1-13-*	-1	KGSGFTFSSYEMQ	BBBLBBBLABBBB
D	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	50.0	H2	10	H2-10-4	11	DICIGGSYTG	BBBBLLABBB
D	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	60.0	H3	18	H3-18-*	-1	AKTARSDYcitgLDDIDA
D	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	87.5	H4	8	H4-8-1	18	RDDGQSTV	BBAAALBB
E	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	62.5	L1	8	L1-8-*	-1	SGgssDYG
E	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	62.5	L2	8	L2-8-*	-1	YENNKRPS	ABAABBBA
E	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	44.4	L3	9	L3-9-*	-1	GSRDTNNGA	BBBBBEBBB
E	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	66.7	L4	6	L4-6-2	13	KFGSTH	BBEABB
F	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	84.6	H1	13	H1-13-1	11	KASGFDFSSYAMG	BBBLBBAAABBBB
F	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	50.0	H2	10	H2-10-2	8	GIRNDGSFTL	BBBAALABBB
F	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	40.0	H3	19	H3-19-*	-1	TKSADDgghysDFSGEIDA
F	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	100.0	H4	8	H4-8-1	17	RDNGQSTV	BBAAALBB
G	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	50.0	L1	8	L1-8-1	17	SGSTYNYG	BLBABBBB
G	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	62.5	L2	8	L2-8-*	-1	YYNDKRPS	BLEABBBA
G	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	44.4	L3	9	L3-9-1	18	GNSDSRNVA	BBBBLLBBB
G	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	83.3	L4	6	L4-6-2	12	KSGSTG	BBEABB
I	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	CDRLenMismatch	-1.0	H1	14	H1-14-*	-1	KGSGFfSFSSYTMQ	BBBLBBLAAABBBB
I	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	CDRLenMismatch	-1.0	H2	9	H2-9-1	20	SISSGGGTN	BBBAALBBB
I	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	Ch_IGHV1-1*01	40.0	H3	19	H3-19-*	-1	AKHGVNGCDWSysvgcVDA
I	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	Ch_IGHV1-1*01	87.5	H4	8	H4-8-1	13	RDNGQSTL	BBAAALBB
J	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	CDRLenMismatch	-1.0	L1	9	L1-9-*	-1	SGGSSSYYG
J	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	62.5	L2	8	L2-8-1	15	YNNQKRPS	BLLABBBB
J	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	44.4	L3	9	L3-9-*	-1	GSRDNSGGI	BBBBAABBB
J	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	83.3	L4	6	L4-6-2	19	KSGSTG	BBEABB
K	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	76.9	H1	13	H1-13-*	-1	KGSGFTFSSYEMQ	BBBLBBBLABBBB
K	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	50.0	H2	10	H2-10-4	12	DICIGGSYTG	BBBBLLABBB
K	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	60.0	H3	18	H3-18-*	-1	AKTARSDYcitgLDDIDA
K	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	87.5	H4	8	H4-8-1	17	RDDGQSTV	BBAAALBB
L	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	62.5	L1	8	L1-8-*	-1	SGgssDYG
L	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	62.5	L2	8	L2-8-*	-1	YENNKRPS	ABAABBBA
L	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	44.4	L3	9	L3-9-*	-1	GSRDTNNGA	BBBBEABBB
L	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	66.7	L4	6	L4-6-2	13	KFGSTH	BBEABB
M	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	84.6	H1	13	H1-13-1	23	KASGFDFSSYAMG	BBBEBBAAABBBB
M	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	50.0	H2	10	H2-10-2	8	GIRNDGSFTL	BBBAALABBB
M	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	40.0	H3	19	H3-19-*	-1	TKSADDgghysDFSGEIDA
M	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	100.0	H4	8	H4-8-1	19	RDNGQSTV	BBAAALBB
N	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	50.0	L1	8	L1-8-1	17	SGSTYNYG	BLBABBBB
N	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	62.5	L2	8	L2-8-*	-1	YYNDKRPS	BLEABBBA
N	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	44.4	L3	9	L3-9-1	19	GNSDSRNVA	BBBBLLBBB
N	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	83.3	L4	6	L4-6-2	12	KSGSTG	BBEABB
P	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	CDRLenMismatch	-1.0	H1	14	H1-14-*	-1	KGSGFfSFSSYTMQ	BBBLBBLAAABBBB
P	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	CDRLenMismatch	-1.0	H2	9	H2-9-1	20	SISSGGGTN	BBBAALBBB
P	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	Ch_IGHV1-1*01	40.0	H3	19	H3-19-*	-1	AKHGVNGCDWSysvgcVDA
P	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	Ch_IGHV1-1*01	87.5	H4	8	H4-8-1	14	RDNGQSTL	BBAAALBB
Q	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	CDRLenMismatch	-1.0	L1	9	L1-9-*	-1	SGGSSSYYG
Q	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	62.5	L2	8	L2-8-1	15	YNNQKRPS	BLLABBBB
Q	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	44.4	L3	9	L3-9-*	-1	GSRDNSGGI	BBBBAABBB
Q	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	83.3	L4	6	L4-6-2	20	KSGSTG	BBEABB
R	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	76.9	H1	13	H1-13-*	-1	KGSGFTFSSYEMQ	BBBLBBBLABBBB
R	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	50.0	H2	10	H2-10-4	13	DICIGGSYTG	BBBBLLABBB
R	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	60.0	H3	18	H3-18-*	-1	AKTARSDYcitgLDDIDA
R	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	87.5	H4	8	H4-8-1	16	RDDGQSTV	BBAAALBB
S	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	62.5	L1	8	L1-8-*	-1	SggssDYG
S	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	62.5	L2	8	L2-8-*	-1	YENNKRPS	BEBLBBBA
S	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	44.4	L3	9	L3-9-4	29	GSRDTNNGA	BBBBEABBB
S	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	66.7	L4	6	L4-6-2	15	KFGSTH	BBEABB
T	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	84.6	H1	13	H1-13-1	12	KASGFDFSSYAMG	BBBLBBAAABBBB
T	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	50.0	H2	10	H2-10-2	8	GIRNDGSFTL	BBBAALABBB
T	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	40.0	H3	19	H3-19-*	-1	TKSADDgghysDFSGEIDA
T	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	100.0	H4	8	H4-8-1	21	RDNGQSTV	BBAAALBB
U	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	50.0	L1	8	L1-8-1	17	SGSTYNYG	BLBABBBB
U	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	62.5	L2	8	L2-8-*	-1	YYNDKRPS	BLEABBBA
U	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	44.4	L3	9	L3-9-1	20	GNSDSRNVA	BBBBLLBBB
U	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	83.3	L4	6	L4-6-2	12	KSGSTG	BBEABB
W	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	CDRLenMismatch	-1.0	H1	14	H1-14-*	-1	KGSGFfSFSSYTMQ	BBBLBBLAAABBBB
W	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	CDRLenMismatch	-1.0	H2	9	H2-9-1	20	SISSGGGTN	BBBAALBBB
W	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	Ch_IGHV1-1*01	40.0	H3	19	H3-19-*	-1	AKHGVNGCDWSysvgcVDA
W	heavy	Gallus.gallus	Ch_IGHV1-1*01	95.8	Ch_IGHV1-1*01	87.5	H4	8	H4-8-1	14	RDNGQSTL	BBAAALBB
X	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	CDRLenMismatch	-1.0	L1	9	L1-9-*	-1	SGGSSSYYG
X	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	62.5	L2	8	L2-8-1	16	YNNQKRPS	BLLABBBB
X	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	44.4	L3	9	L3-9-*	-1	GSRDNSGGI	BBBBAABBB
X	lambda	Gallus.gallus	Ch_IGLV1-1*02	92.4	Ch_IGLV1-1*02	83.3	L4	6	L4-6-2	19	KSGSTG	BBEABB
Y	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	76.9	H1	13	H1-13-*	-1	KGSGFTFSSYEMQ	BBBLBBBLABBBB
Y	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	50.0	H2	10	H2-10-4	10	DICIGGSYTG	BBBBLLABBB
Y	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	60.0	H3	18	H3-18-*	-1	AKTARSDYcitgLDDIDA
Y	heavy	Gallus.gallus	Ch_IGHV1S1*01	93.1	Ch_IGHV1S1*01	87.5	H4	8	H4-8-1	15	RDDGQSTV	BBAAALBB
Z	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	62.5	L1	8	L1-8-*	-1	SggssDYG
Z	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	62.5	L2	8	L2-8-*	-1	YENNKRPS	BEAABBBA
Z	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	44.4	L3	9	L3-9-*	-1	GSRDTNNGA	BBBBEAAEB
Z	lambda	Gallus.gallus	Ch_IGLV1-1*02	93.9	Ch_IGLV1-1*02	66.7	L4	6	L4-6-2	13	KFGSTH	BBEABB
a	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	84.6	H1	13	H1-13-1	15	KASGFDFSSYAMG	BBBLBBAAABBBB
a	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	50.0	H2	10	H2-10-2	11	GIRNDGSFTL	BBBAALABBB
a	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	40.0	H3	19	H3-19-*	-1	TKSADDgghysDFSGEIDA
a	heavy	Gallus.gallus	Ch_IGHV1S1*01	91.7	Ch_IGHV1S1*01	100.0	H4	8	H4-8-1	21	RDNGQSTV	BBAAALBB
b	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	50.0	L1	8	L1-8-1	13	SGSTYNYG	BLBABBBB
b	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	62.5	L2	8	L2-8-*	-1	YYNDKRPS	BLEABBBA
b	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	44.4	L3	9	L3-9-1	19	GNSDSRNVA	BBBBLLBBB
b	lambda	Gallus.gallus	Ch_IGLV1-1*02	95.5	Ch_IGLV1-1*02	83.3	L4	6	L4-6-2	13	KSGSTG	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022