PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7NXA

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	92.3	H1	13	H1-13-1	11	AASGLTVSSNYMS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	88.9	H2	9	H2-9-1	9	VIYSGGSTF	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	100.0	H3	13	H3-13-*	-1	ARGEGSPGNWFDP	BBEALBBLBBBBb
A	heavy	Homo.sapiens	Hu_IGHV3-53*01	98.6	Hu_IGHV3-53*01	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	91.7	L1	12	L1-12-1	11	RASQSVpSSYLA	BBABBBBAAABB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	87.5	L2	8	L2-8-1	6	YGASTRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	100.0	L3	8	L3-8-4	12	QHYDTSPR	BBBAABBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*02	92.8	Hu_IGKV3-20*02	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	84.6	H1	13	H1-13-1	12	AASAFTFSSYDMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H2	10	H2-10-2	6	VISYDGSNKY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H3	14	H3-14-*	-1	AKDGGKLWVYYFDY	BBBBAABABBBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	98.6	Hu_IGHV3-30-3*02	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	6	RASQSISSYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	8	YAASSLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	85.7	L3	10	L3-10-*	-1	QQSYSTlaLT	BBAABAABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022