PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7KC1

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	60.0	H1	15	H1-15-2	22	SISGDTVTNNYaaWD	BBBLBBABBABBBBB
E	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	72.7	H2	11	H2-11-*	-1	RTfYRSKWYKE	BBBBBLBBBBB
E	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	100.0	H3	17	H3-17-*	-1	ARAGITIfglITGGLDY
E	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	87.5	H4	8	H4-8-1	27	PDTSKNQI	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RTSQSLSSYTH	BBABBBAAABB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	23	YAASSRGS	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	0.0	L3	5	L3-5-*	-1	QQSRT	BAAAB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-2	11	GSGTDF	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	60.0	H1	15	H1-15-2	22	SISGDTVTNNYaaWD	BBBLBBABBAABBBB
H	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	72.7	H2	11	H2-11-1	14	RTfYRSKWYKE	BBBBBLBBBBB
H	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	100.0	H3	17	H3-17-*	-1	ARAGITIfglITGGLDY
H	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	87.5	H4	8	H4-8-1	24	PDTSKNQI	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	60.0	H1	15	H1-15-2	22	SISGDTVTNNYaaWD	BBBLBBABBAABBBB
J	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	72.7	H2	11	H2-11-1	11	RTfYRSKWYKE	BBBBBLBBBBB
J	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	100.0	H3	17	H3-17-*	-1	ARAGITIfglITGGLDY
J	heavy	Homo.sapiens	Hu_IGHV6-1*01	90.4	Hu_IGHV6-1*01	87.5	H4	8	H4-8-1	23	PDTSKNQI	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RTSQSLSSYTH	BBABBBAAABB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	23	YAASSRGS	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	0.0	L3	5	L3-5-*	-1	QQSRT	BAAAB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-2	11	GSGTDF	BBEABB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RTSQSLSSYTH	BBABBBAAABB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	23	YAASSRGS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	0.0	L3	5	L3-5-*	-1	QQSRT	BAAAB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-2	12	GSGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022