PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6VCA

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H1	13	H1-13-1	20	AASGFTFSSYGMH	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	90.0	H2	10	H2-10-2	22	VFWYDGSNKY	BBBAAEABBB
E	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H3	12	H3-12-*	-1	ARAPNWDDAFDI	BBBBABALBBAB
E	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	14	RDNSKNTL	BBAAALBB
F	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	92.9	L1	14	L1-14-*	-1	GLSSGSVSTsYYPN	BBABEBBBAAALBE
F	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	100.0	L2	8	L2-8-1	25	YSTNTRSS	BLLABBBB
F	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	87.5	L3	10	L3-10-2	32	VLFMGSGIWV	BBBAELLBBB
F	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	100.0	L4	6	L4-6-2	22	ILGNKA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H1	13	H1-13-1	20	AASGFTFSSYGMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	90.0	H2	10	H2-10-2	23	VFWYDGSNKY	BBBAAEABBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H3	12	H3-12-*	-1	ARAPNWDDAFDI	BBBBABALBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	14	RDNSKNTL	BBAAALBB
J	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	92.9	L1	14	L1-14-*	-1	GLSSGSVSTsYYPN	BBABEBBBAAALBB
J	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	100.0	L2	8	L2-8-*	-1	YSTNTRSS	ABAABBBB
J	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	87.5	L3	10	L3-10-2	33	VLFMGSGIWV	BBBAELLBBB
J	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	100.0	L4	6	L4-6-2	22	ILGNKA	BBEABB
K	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H1	13	H1-13-1	20	AASGFTFSSYGMH	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	90.0	H2	10	H2-10-2	19	VFWYDGSNKY	BBBAALABBB
K	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H3	12	H3-12-*	-1	ARAPNWDDAFDI	BBBBABLLBBAB
K	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H4	8	H4-8-*	-1	RDNSKNTL	BBBLALBB
L	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	92.9	L1	14	L1-14-*	-1	GLSSGSVSTsYYPN	BBABEBBBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	100.0	L2	8	L2-8-1	25	YSTNTRSS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	87.5	L3	10	L3-10-2	32	VLFMGSGIWV	BBBAELLBBB
L	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	100.0	L4	6	L4-6-2	21	ILGNKA	BBEABB
O	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	92.9	L1	14	L1-14-*	-1	GLSSGSVSTsYYPN	BBABEBBBAAALBB
O	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	100.0	L2	8	L2-8-1	24	YSTNTRSS	BLLABBBB
O	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	87.5	L3	10	L3-10-2	33	VLFMGSGIWV	BBBAELLBBB
O	lambda	Homo.sapiens	Hu_IGLV8-61*01	100.0	Hu_IGLV8-61*01	100.0	L4	6	L4-6-2	22	ILGNKA	BBEABB
P	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H1	13	H1-13-1	20	AASGFTFSSYGMH	BBBLBBAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	90.0	H2	10	H2-10-2	20	VFWYDGSNKY	BBBAALABBB
P	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H3	12	H3-12-*	-1	ARAPNWDDAFDI	BBBBABLLBBAB
P	heavy	Homo.sapiens	Hu_IGHV3-33*01	98.6	Hu_IGHV3-33*01	100.0	H4	8	H4-8-*	-1	RDNSKNTL	BBBLALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022