PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6PBV

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Homo.sapiens	Hu_IGLV2-14*01	94.1	Hu_IGLV2-14*01	92.9	L1	14	L1-14-2	7	TGTSSDVGSyNYVS	BBBAAAAAABABBB
A	lambda	Homo.sapiens	Hu_IGLV2-14*01	94.1	Hu_IGLV2-14*01	62.5	L2	8	L2-8-1	4	YDVNTRPS	BLEABBBB
A	lambda	Homo.sapiens	Hu_IGLV2-14*01	94.1	Hu_IGLV2-14*01	66.7	L3	10	L3-10-2	6	SSYAGSSTWV	BBBAELLBBB
A	lambda	Homo.sapiens	Hu_IGLV2-14*01	94.1	Hu_IGLV2-14*01	100.0	L4	6	L4-6-2	7	KSGNTA	BBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-3*01	93.2	Hu_IGHV1-3*01	84.6	H1	13	H1-13-1	12	KASGFTFTDYAMH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-3*01	93.2	Hu_IGHV1-3*01	90.0	H2	10	H2-10-1	10	WINAGNGYTK	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-3*01	93.2	Hu_IGHV1-3*01	100.0	H3	19	H3-19-*	-1	ARDgfcpsNTCSGYYGMDV
B	heavy	Homo.sapiens	Hu_IGHV1-3*01	93.2	Hu_IGHV1-3*01	75.0	H4	8	H4-8-1	6	RDTFASTV	BBAAALBB
C	lambda	Homo.sapiens	Hu_IGLV2-14*01	94.1	Hu_IGLV2-14*01	92.9	L1	14	L1-14-2	6	TGTSSDVGSyNYVS	BBBAAAAAABABBB
C	lambda	Homo.sapiens	Hu_IGLV2-14*01	94.1	Hu_IGLV2-14*01	62.5	L2	8	L2-8-1	7	YDVNTRPS	BLLABBBB
C	lambda	Homo.sapiens	Hu_IGLV2-14*01	94.1	Hu_IGLV2-14*01	66.7	L3	10	L3-10-2	5	SSYAGSSTWV	BBBAELLBBB
C	lambda	Homo.sapiens	Hu_IGLV2-14*01	94.1	Hu_IGLV2-14*01	100.0	L4	6	L4-6-2	8	KSGNTA	BBEABB
D	heavy	Homo.sapiens	Hu_IGHV1-3*01	93.2	Hu_IGHV1-3*01	84.6	H1	13	H1-13-1	14	KASGFTFTDYAMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-3*01	93.2	Hu_IGHV1-3*01	90.0	H2	10	H2-10-1	10	WINAGNGYTK	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-3*01	93.2	Hu_IGHV1-3*01	100.0	H3	19	H3-19-*	-1	ARDgfcpsNTCSGYYGMDV
D	heavy	Homo.sapiens	Hu_IGHV1-3*01	93.2	Hu_IGHV1-3*01	75.0	H4	8	H4-8-1	5	RDTFASTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022