PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6OBD

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Hu_IGKV2D-29*02	97.1	Mo_IGKV1-133*01	100.0	L1	16	L1-16-1	7	KSSQSLlysngKTYLN	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Hu_IGKV2D-29*02	97.1	Mo_IGKV1-133*01	100.0	L2	8	L2-8-1	6	YLVSKLDS	BLEABBBB
A	kappa	Mus.musculus	Hu_IGKV2D-29*02	97.1	Hu_IGKV2D-29*02	14.3	L3	8	L3-8-1	11	VQGSHFHT	BBAABEBB
A	kappa	Mus.musculus	Hu_IGKV2D-29*02	97.1	Hu_IGKV2D-29*02	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
B	heavy	Mus.musculus	Hu_IGHV3-72*01	98.6	Mo_IGHV6-3*01	84.6	H1	13	H1-13-1	11	AASGFPFSNYWMN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Hu_IGHV3-72*01	98.6	Mo_IGHV6-3*01	91.7	H2	12	H2-12-1	8	QIRlkSNNYATH	BBBBAAALLBBB
B	heavy	Mus.musculus	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	0.0	H3	5	H3-5-2	12	TPIDY	BALAB
B	heavy	Mus.musculus	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	100.0	H4	8	H4-8-1	11	RDDSKNSL	BBAAALBB
H	heavy	Mus.musculus	Hu_IGHV3-72*01	98.6	Mo_IGHV6-3*01	84.6	H1	13	H1-13-1	13	AASGFPFSNYWMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Hu_IGHV3-72*01	98.6	Mo_IGHV6-3*01	91.7	H2	12	H2-12-1	11	QIRlkSNNYATH	BBBBAAALLBBB
H	heavy	Mus.musculus	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	0.0	H3	5	H3-5-2	13	TPIDY	BALAB
H	heavy	Mus.musculus	Hu_IGHV3-72*01	98.6	Hu_IGHV3-72*01	100.0	H4	8	H4-8-1	11	RDDSKNSL	BBAAALBB
L	kappa	Mus.musculus	Hu_IGKV2D-29*02	97.1	Mo_IGKV1-133*01	100.0	L1	16	L1-16-1	7	KSSQSLlysngKTYLN	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Hu_IGKV2D-29*02	97.1	Mo_IGKV1-133*01	100.0	L2	8	L2-8-1	4	YLVSKLDS	BLLABBBB
L	kappa	Mus.musculus	Hu_IGKV2D-29*02	97.1	Hu_IGKV2D-29*02	14.3	L3	8	L3-8-1	12	VQGSHFHT	BBAABEBB
L	kappa	Mus.musculus	Hu_IGKV2D-29*02	97.1	Hu_IGKV2D-29*02	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022