PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5YD4

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	92.3	H1	13	H1-13-1	8	KAAGYTFTKYWIG	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	60.0	H2	10	H2-10-1	7	DIHPGSFYSN	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	100.0	H3	10	H3-10-1	14	ARDYYTNYGD	BBBBLLBBAB
A	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	100.0	H4	8	H4-8-1	6	ADTSSSTA	BBAAALBB
A	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	87.5	L1	16	L1-16-1	6	RSSKSLlhrngNTYLF	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L2	8	L2-8-1	5	YRMSNLAS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L3	9	L3-9-cis7-1	9	MQHLEYPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L4	6	L4-6-*	-1	GSGTAF	EALABB
C	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	92.3	H1	13	H1-13-1	8	KAAGYTFTKYWIG	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	60.0	H2	10	H2-10-1	5	DIHPGSFYSN	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	100.0	H3	10	H3-10-1	14	ARDYYTNYGD	BBBBLLBBAB
C	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	100.0	H4	8	H4-8-1	8	ADTSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	87.5	L1	16	L1-16-1	7	RSSKSLlhrngNTYLF	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L2	8	L2-8-1	6	YRMSNLAS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L3	9	L3-9-cis7-1	8	MQHLEYPYT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L4	6	L4-6-*	-1	GSGTAF	EALABB
E	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	92.3	H1	13	H1-13-1	8	KAAGYTFTKYWIG	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	60.0	H2	10	H2-10-1	11	DIHPGSFYSN	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	100.0	H3	10	H3-10-1	15	ARDYYTNYGD	BBBBLLBBAB
E	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	100.0	H4	8	H4-8-1	9	ADTSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	87.5	L1	16	L1-16-1	6	RSSKSLlhrngNTYLF	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L2	8	L2-8-1	6	YRMSNLAS	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L3	9	L3-9-cis7-1	8	MQHLEYPYT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L4	6	L4-6-3	13	GSGTAF	EBAABB
G	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	92.3	H1	13	H1-13-1	9	KAAGYTFTKYWIG	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	60.0	H2	10	H2-10-1	7	DIHPGSFYSN	BBBAAALBBB
G	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	100.0	H3	10	H3-10-1	13	ARDYYTNYGD	BBBBLLBBAB
G	heavy	Mus.musculus	Mo_IGHV1-63*02	98.6	Mo_IGHV1-63*02	100.0	H4	8	H4-8-1	8	ADTSSSTA	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	87.5	L1	16	L1-16-1	10	RSSKSLlhrngNTYLF	BBABBABBAALBBBBB
G	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L2	8	L2-8-1	8	YRMSNLAS	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L3	9	L3-9-cis7-1	6	MQHLEYPYT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV2-137*01	98.6	Mo_IGKV2-137*01	100.0	L4	6	L4-6-3	15	GSGTAF	EBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022