PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5VZX

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Mo_IGHV5-6-3*01	100.0	H1	13	H1-13-1	9	AASGFTFSSYGMS	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Mo_IGHV5-6-3*01	90.0	H2	10	H2-10-*	-1	SINSNGGSTY	BBBAAbABBB
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	50.0	H3	5	H3-5-2	7	ASGDY	BALAB
E	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	100.0	H4	8	H4-8-1	9	RDNAKNSL	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Mo_IGHV5-6-3*01	100.0	H1	13	H1-13-1	10	AASGFTFSSYGMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Mo_IGHV5-6-3*01	90.0	H2	10	H2-10-2	17	SINSNGGSTY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	50.0	H3	5	H3-5-2	9	ASGDY	BAEAB
H	heavy	Homo.sapiens	Hu_IGHV3-7*01	97.3	Hu_IGHV3-7*01	100.0	H4	8	H4-8-1	12	RDNAKNSL	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Mo_IGKV1-110*01	87.5	L1	16	L1-16-1	11	RSSQSLvysngDTYLH	BBABBABBAALBBBBB
I	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	10	YKVSNRFS	BLEABBBB
I	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	28.6	L3	9	L3-9-cis7-1	11	SQSTHVPWT	BBAABBbBB
I	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Mo_IGKV1-110*01	87.5	L1	16	L1-16-1	10	RSSQSLvysngDTYLH	BBABBABBAALBBBBB
L	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	9	YKVSNRFS	BLEABBBB
L	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	28.6	L3	9	L3-9-cis7-1	9	SQSTHVPWT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV2-28*01	100.0	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022