PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5JW5

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	80.0	H1	15	H1-15-2	13	AISGDSVSSYnaVWN	BBBLBBAABAABBBB
A	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	90.9	H2	11	H2-11-1	13	RTYYRSGwYND	BBBBBLEBBBB
A	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H3	18	H3-18-*	-1	ARSGHITvfgvNVDAFDM
A	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H4	8	H4-8-1	18	PDTSKNQF	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RTSqslSSYTH
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	5	YAASSRGS	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	0.0	L3	5	L3-5-1	9	QQSRT	BBEAB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-2	14	GSGTDF	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	80.0	H1	15	H1-15-2	13	AISGDSVSSYnaVWN	BBBLBBAABAABBBB
H	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	90.9	H2	11	H2-11-1	13	RTYYRSGwYND	BBBBBLEBBBB
H	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H3	18	H3-18-*	-1	ARSGHITvfgvNVDAFDM
H	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H4	8	H4-8-1	19	PDTSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RTSQSLSSYTH	BBBLBABABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	4	YAASSRGS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	0.0	L3	5	L3-5-1	9	QQSRT	BBEAB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-2	9	GSGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022