PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5F3H

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Mo_IGHV5-9-1*01	100.0	H1	13	H1-13-1	10	AASGFTFSSYAMS	BBBLBBAAABBBB
A	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Mo_IGHV5-9-1*01	90.0	H2	10	H2-10-2	11	TISSGGSYTS	BBBAALABBB
A	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Hu_IGHV3-23*05	100.0	H3	9	H3-9-*	-1	AKQDYAMNY	BBBBABBBE
A	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
B	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	100.0	L1	11	L1-11-1	9	KASQDVSTAVA	BBABBAEABBB
B	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	100.0	L2	8	L2-8-1	9	YSASYRYT	BLLABBBB
B	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	20	QQHYSTPWT	BBAABBbBB
B	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	16	GSGTDF	EBEABB
C	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Mo_IGHV5-9-1*01	100.0	H1	13	H1-13-1	9	AASGFTFSSYAMS	BBBLBBAAABBBB
C	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Mo_IGHV5-9-1*01	90.0	H2	10	H2-10-2	11	TISSGGSYTS	BBBAALABBB
C	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Hu_IGHV3-23*05	100.0	H3	9	H3-9-*	-1	AKQDYAMNY	BBBBABBBE
C	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
D	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	100.0	L1	11	L1-11-1	6	KASQDVSTAVA	BBABBAEABBB
D	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	100.0	L2	8	L2-8-1	12	YSASYRYT	BLLABBBB
D	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	12	QQHYSTPWT	BBAABBbBB
D	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	24	GSGTDF	EBEABB
E	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Mo_IGHV5-9-1*01	100.0	H1	13	H1-13-1	9	AASGFTFSSYAMS	BBBLBBAAABBBB
E	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Mo_IGHV5-9-1*01	90.0	H2	10	H2-10-2	11	TISSGGSYTS	BBBAALABBB
E	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Hu_IGHV3-23*05	100.0	H3	9	H3-9-2	15	AKQDYAMNY	BBBBABBAB
E	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Hu_IGHV3-23*05	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB
F	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	100.0	L1	11	L1-11-1	7	KASQDVSTAVA	BBABBAEABBB
F	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	100.0	L2	8	L2-8-1	9	YSASYRYT	BLLABBBB
F	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	23	QQHYSTPWT	BBAABBbBB
F	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
G	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Mo_IGHV5-9-1*01	100.0	H1	13	H1-13-1	9	AASGFTFSSYAMS	BBBLBBAAABBBB
G	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Mo_IGHV5-9-1*01	90.0	H2	10	H2-10-2	12	TISSGGSYTS	BBBAALABBB
G	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Hu_IGHV3-23*05	100.0	H3	9	H3-9-*	-1	AKQDYAMNY	BBBBABBBE
G	heavy	Mus.musculus	Hu_IGHV3-23*05	98.6	Hu_IGHV3-23*05	100.0	H4	8	H4-8-*	-1	RDNSKNTL	BBAAALBB
H	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	100.0	L1	11	L1-11-1	16	KASQDVSTAVA	BBABBAEABBB
H	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	100.0	L2	8	L2-8-1	11	YSASYRYT	BLLABBBB
H	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	85.7	L3	9	L3-9-cis7-1	12	QQHYSTPWT	BBAABBbBB
H	kappa	Mus.musculus	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	21	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022