PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4ZPT

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	97.3	Mo_IGHV5-9-3*01	100.0	H1	13	H1-13-1	7	AASGFTFSSYAMS	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	97.3	Mo_IGHV5-9-3*01	90.0	H2	10	H2-10-2	7	TISSGGTYTY	BBBAALABBB
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	97.3	Mo_IGHV5-9-3*01	50.0	H3	9	H3-9-2	25	VRDGNSMDY	BBBEABBAB
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	97.3	Mo_IGHV5-9-3*01	87.5	H4	8	H4-8-1	5	RDNAENTL	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	90.9	L1	11	L1-11-2	5	RASQDINNYLN	BBABBALLBBB
B	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	6	YYTSRLHS	BLEABBBB
B	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	85.7	L3	9	L3-9-cis7-1	7	QQANTLPPT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	83.3	L4	6	L4-6-1	12	GSGSDY	EBEABB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	97.3	Mo_IGHV5-9-3*01	100.0	H1	13	H1-13-1	8	AASGFTFSSYAMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	97.3	Mo_IGHV5-9-3*01	90.0	H2	10	H2-10-2	7	TISSGGTYTY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	97.3	Mo_IGHV5-9-3*01	50.0	H3	9	H3-9-*	-1	VRDGNSMDY	BBBaABBAB
H	heavy	Mus.musculus	Mo_IGHV5-9-3*01	97.3	Mo_IGHV5-9-3*01	87.5	H4	8	H4-8-1	7	RDNAENTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	90.9	L1	11	L1-11-2	5	RASQDINNYLN	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	6	YYTSRLHS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	85.7	L3	9	L3-9-cis7-1	6	QQANTLPPT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV10-96*01	97.1	Mo_IGKV10-96*01	83.3	L4	6	L4-6-1	12	GSGSDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022